Query gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 511 No_of_seqs 215 out of 7498 Neff 7.6 Searched_HMMs 39220 Date Mon May 23 21:37:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764461.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK12267 methionyl-tRNA synthe 100.0 0 0 1123.3 33.9 503 4-510 3-510 (644) 2 PRK00133 metG methionyl-tRNA s 100.0 0 0 1103.7 32.1 495 5-510 2-530 (666) 3 COG0143 MetG Methionyl-tRNA sy 100.0 0 0 1105.4 30.5 509 1-510 1-544 (558) 4 TIGR00398 metG methionyl-tRNA 100.0 0 0 1099.1 28.2 503 7-511 1-573 (573) 5 PRK11893 methionyl-tRNA synthe 100.0 0 0 1047.8 35.9 505 5-510 1-509 (512) 6 PRK12268 methionyl-tRNA synthe 100.0 0 0 1041.6 32.1 502 5-510 3-542 (558) 7 KOG0436 consensus 100.0 0 0 844.7 28.1 506 4-509 38-567 (578) 8 TIGR00422 valS valyl-tRNA synt 100.0 0 0 766.8 27.0 479 5-494 35-821 (970) 9 pfam09334 tRNA-synt_1g tRNA sy 100.0 0 0 759.3 16.5 358 7-366 1-388 (388) 10 KOG1247 consensus 100.0 0 0 764.2 12.4 501 3-510 12-549 (567) 11 PRK05729 valS valyl-tRNA synth 100.0 0 0 716.2 27.1 479 2-491 32-710 (877) 12 PRK13208 valS valyl-tRNA synth 100.0 0 0 702.8 27.6 472 3-489 36-721 (809) 13 COG0525 ValS Valyl-tRNA synthe 100.0 0 0 701.5 28.4 468 5-489 33-708 (877) 14 PRK06039 ileS isoleucyl-tRNA s 100.0 0 0 693.7 24.3 480 3-492 33-789 (1042) 15 PRK05743 ileS isoleucyl-tRNA s 100.0 0 0 669.4 27.6 470 3-491 47-784 (910) 16 PRK13804 ileS isoleucyl-tRNA s 100.0 0 0 662.3 28.6 469 3-490 52-825 (966) 17 TIGR00392 ileS isoleucyl-tRNA 100.0 0 0 645.4 22.2 465 3-479 34-860 (938) 18 COG0060 IleS Isoleucyl-tRNA sy 100.0 0 0 634.0 26.2 472 3-492 47-795 (933) 19 cd00814 MetRS_core This is the 100.0 0 0 646.6 17.4 316 6-341 1-319 (319) 20 PRK00390 leuS leucyl-tRNA synt 100.0 0 0 629.1 25.2 452 2-493 29-756 (822) 21 TIGR00396 leuS_bact leucyl-tRN 100.0 0 0 618.0 21.6 475 1-493 27-847 (916) 22 cd00817 ValRS_core This is the 100.0 0 0 620.4 14.0 303 5-341 1-363 (363) 23 cd00818 IleRS_core This is the 100.0 0 0 606.4 14.7 304 5-341 1-339 (339) 24 PRK12300 leuS leucyl-tRNA synt 100.0 0 0 585.5 23.5 441 20-490 1-736 (888) 25 cd00812 LeuRS_core This is the 100.0 0 0 587.6 16.1 316 6-341 1-376 (376) 26 COG0495 LeuS Leucyl-tRNA synth 100.0 0 0 573.8 21.0 455 5-491 34-747 (814) 27 cd00668 Ile_Leu_Val_MetRS_core 100.0 0 0 579.8 15.1 300 6-341 1-334 (334) 28 pfam00133 tRNA-synt_1 tRNA syn 100.0 0 0 555.6 11.9 333 3-342 21-606 (606) 29 KOG0432 consensus 100.0 0 0 500.1 23.6 458 4-479 74-808 (995) 30 TIGR00395 leuS_arch leucyl-tRN 100.0 0 0 509.4 12.9 459 5-489 41-917 (1109) 31 KOG0435 consensus 100.0 0 0 478.8 16.5 449 3-480 56-782 (876) 32 KOG0433 consensus 100.0 0 0 463.0 25.5 436 16-480 66-798 (937) 33 pfam01406 tRNA-synt_1e tRNA sy 100.0 0 0 451.2 14.0 291 3-351 8-301 (301) 34 KOG0434 consensus 100.0 0 0 427.8 21.7 469 2-478 35-784 (1070) 35 PRK00260 cysS cysteinyl-tRNA s 100.0 1.8E-44 0 347.7 21.7 342 4-431 23-373 (460) 36 COG0215 CysS Cysteinyl-tRNA sy 100.0 6.2E-42 0 329.0 16.7 346 4-430 22-377 (464) 37 TIGR00435 cysS cysteinyl-tRNA 100.0 1.5E-41 0 326.2 16.9 370 4-429 22-541 (660) 38 KOG0437 consensus 100.0 1.3E-41 0 326.5 14.8 447 3-483 42-874 (1080) 39 PRK12418 cysteinyl-tRNA synthe 100.0 3.8E-38 9.8E-43 301.0 17.2 338 4-430 9-364 (384) 40 TIGR03447 mycothiol_MshC cyste 100.0 7.7E-38 2E-42 298.7 16.9 338 4-428 36-389 (411) 41 KOG2007 consensus 100.0 1.2E-33 3.1E-38 267.7 20.2 359 4-432 55-428 (586) 42 cd00672 CysRS_core This is the 100.0 3.6E-29 9.1E-34 234.7 10.0 189 4-342 20-213 (213) 43 cd07957 Anticodon_Ia_Met Antic 99.9 4.8E-25 1.2E-29 204.2 13.0 128 350-477 1-129 (129) 44 PRK12451 arginyl-tRNA syntheta 99.9 9.6E-22 2.4E-26 179.8 23.8 332 2-432 110-525 (562) 45 PRK01611 argS arginyl-tRNA syn 99.9 3E-21 7.6E-26 176.1 22.8 335 3-432 116-531 (570) 46 COG0018 ArgS Arginyl-tRNA synt 99.9 2.2E-20 5.5E-25 169.8 20.7 345 3-441 115-545 (577) 47 cd00802 class_I_aaRS_core Clas 99.8 1E-20 2.7E-25 172.1 7.2 140 8-306 1-142 (142) 48 TIGR00456 argS arginyl-tRNA sy 99.8 3.7E-18 9.3E-23 153.3 17.8 346 3-441 116-568 (600) 49 PRK00750 lysK lysyl-tRNA synth 99.8 2.2E-16 5.5E-21 140.2 17.2 256 4-343 28-326 (513) 50 COG1384 LysS Lysyl-tRNA synthe 99.7 4.8E-15 1.2E-19 130.3 18.8 256 5-345 19-319 (521) 51 pfam01921 tRNA-synt_1f tRNA sy 99.7 6.7E-17 1.7E-21 144.0 8.2 263 4-348 18-323 (355) 52 cd00674 LysRS_core_class_I Thi 99.7 1.3E-16 3.3E-21 141.8 8.0 257 4-343 18-316 (354) 53 pfam00750 tRNA-synt_1d tRNA sy 99.7 6.3E-16 1.6E-20 136.8 11.3 121 3-123 17-186 (345) 54 cd07961 Anticodon_Ia_Ile_ABEc 99.7 1.8E-15 4.6E-20 133.4 12.0 149 341-492 1-159 (183) 55 cd07962 Anticodon_Ia_Val Antic 99.7 2E-15 5E-20 133.2 11.4 130 341-477 1-135 (135) 56 cd07960 Anticodon_Ia_Ile_BEm A 99.6 3.5E-14 8.8E-19 124.0 10.4 135 352-491 10-155 (180) 57 pfam08264 Anticodon_1 Anticodo 99.4 3.7E-12 9.4E-17 109.0 11.5 93 387-480 1-95 (148) 58 cd07958 Anticodon_Ia_Leu_BEm A 99.4 2.2E-12 5.6E-17 110.6 10.3 116 342-477 2-117 (117) 59 cd07959 Anticodon_Ia_Leu_AEc A 99.3 3.5E-11 8.9E-16 101.8 10.8 102 364-477 15-117 (117) 60 PRK00574 gltX glutamyl-tRNA sy 99.3 2.1E-10 5.3E-15 96.0 14.4 268 14-349 11-303 (489) 61 PRK12558 glutamyl-tRNA synthet 99.2 1.8E-10 4.6E-15 96.5 11.8 274 14-349 9-298 (461) 62 PRK12410 glutamyl-tRNA synthet 99.2 2E-10 5E-15 96.2 11.5 265 14-349 6-282 (433) 63 cd07375 Anticodon_Ia_like Anti 99.2 1.8E-10 4.7E-15 96.4 10.2 107 353-466 9-117 (117) 64 TIGR00464 gltX_bact glutamyl-t 99.1 7.4E-09 1.9E-13 84.6 14.5 270 14-349 8-321 (513) 65 PRK01406 gltX glutamyl-tRNA sy 99.0 3.4E-10 8.6E-15 94.5 5.7 264 14-349 9-290 (467) 66 COG0008 GlnS Glutamyl- and glu 99.0 6.1E-10 1.5E-14 92.6 6.9 95 8-122 10-105 (472) 67 pfam00749 tRNA-synt_1c tRNA sy 99.0 3.4E-10 8.7E-15 94.4 5.4 90 13-122 7-97 (314) 68 PRK04156 gltX glutamyl-tRNA sy 99.0 1.6E-09 4.1E-14 89.5 8.1 282 8-358 101-408 (566) 69 PRK05710 glutamyl-Q tRNA(Asp) 98.9 1.1E-08 2.7E-13 83.4 8.9 96 8-122 5-100 (299) 70 cd00418 GlxRS_core Glutamyl-tR 98.7 1.1E-07 2.7E-12 76.0 9.4 85 13-117 7-92 (223) 71 cd00671 ArgRS_core This is the 98.7 2.3E-07 5.9E-12 73.5 9.2 58 6-63 1-58 (267) 72 KOG1149 consensus 98.4 5.4E-05 1.4E-09 56.0 15.3 267 14-356 40-337 (524) 73 PRK05347 glutaminyl-tRNA synth 98.3 3.2E-06 8.1E-11 65.1 8.4 100 5-123 27-126 (556) 74 cd00807 Gln_GluRS_non_core Glu 98.3 2.9E-06 7.4E-11 65.4 7.5 92 9-120 3-94 (238) 75 TIGR00463 gltX_arch glutamyl-t 98.3 6.4E-07 1.6E-11 70.2 3.5 278 8-358 102-412 (600) 76 KOG1147 consensus 98.0 7E-05 1.8E-09 55.2 8.8 98 9-126 202-299 (712) 77 cd00808 GluRS_core Descriminat 97.8 6.8E-05 1.7E-09 55.3 6.9 63 13-93 7-69 (239) 78 cd07956 Anticodon_Ia_Arg Antic 97.7 0.00073 1.9E-08 47.6 10.0 119 318-442 1-125 (156) 79 TIGR00467 lysS_arch lysyl-tRNA 97.6 0.0018 4.6E-08 44.8 11.1 87 6-93 20-125 (539) 80 KOG1148 consensus 97.3 0.00094 2.4E-08 46.9 7.1 95 8-122 249-343 (764) 81 KOG4426 consensus 97.2 0.0064 1.6E-07 40.7 10.2 53 4-56 187-239 (656) 82 PRK08560 tyrosyl-tRNA syntheta 97.1 0.0034 8.6E-08 42.7 7.6 77 2-92 26-103 (333) 83 PRK12284 tryptophanyl-tRNA syn 97.0 0.0064 1.6E-07 40.7 8.6 91 16-118 11-104 (436) 84 PRK12285 tryptophanyl-tRNA syn 97.0 0.012 2.9E-07 38.8 9.8 79 2-92 62-140 (369) 85 cd02156 nt_trans nt_trans (nuc 97.0 0.00027 6.9E-09 50.9 1.4 45 13-63 3-47 (147) 86 KOG1195 consensus 97.0 0.014 3.6E-07 38.1 9.9 146 278-430 345-527 (567) 87 COG0180 TrpS Tryptophanyl-tRNA 96.8 0.019 4.7E-07 37.3 9.7 95 2-109 2-100 (314) 88 cd00806 TrpRS_core Tryptophany 96.8 0.0073 1.9E-07 40.3 7.3 78 16-105 9-89 (282) 89 TIGR00440 glnS glutaminyl-tRNA 96.7 0.0018 4.6E-08 44.8 3.8 90 13-122 6-96 (564) 90 cd00805 TyrRS_core Tyrosinyl-t 96.6 0.00081 2.1E-08 47.3 1.6 71 16-92 9-83 (268) 91 PRK12556 tryptophanyl-tRNA syn 96.6 0.038 9.6E-07 35.0 9.7 91 1-106 1-93 (328) 92 TIGR00233 trpS tryptophanyl-tR 96.5 0.029 7.3E-07 35.9 8.5 93 5-109 2-103 (366) 93 PRK13354 tyrosyl-tRNA syntheta 96.3 0.0015 3.9E-08 45.3 1.4 75 6-87 39-115 (405) 94 PRK12283 tryptophanyl-tRNA syn 96.3 0.07 1.8E-06 33.0 9.6 86 8-107 5-93 (398) 95 PRK12282 tryptophanyl-tRNA syn 96.1 0.074 1.9E-06 32.8 9.2 88 5-106 2-92 (333) 96 cd00395 Tyr_Trp_RS_core Tyrosi 95.9 0.028 7.2E-07 35.9 6.1 66 16-92 9-74 (274) 97 pfam00579 tRNA-synt_1b tRNA sy 95.9 0.0046 1.2E-07 41.8 2.0 53 258-318 150-214 (291) 98 PRK12282 tryptophanyl-tRNA syn 95.4 0.15 3.9E-06 30.5 8.5 35 439-480 296-330 (333) 99 pfam01927 DUF82 Protein of unk 95.2 0.047 1.2E-06 34.3 5.3 34 33-68 11-44 (146) 100 PRK12284 tryptophanyl-tRNA syn 95.1 0.22 5.5E-06 29.4 8.5 32 284-315 181-215 (436) 101 PRK00927 tryptophanyl-tRNA syn 95.1 0.26 6.7E-06 28.8 8.9 78 16-106 9-89 (325) 102 COG1656 Uncharacterized conser 95.0 0.11 2.8E-06 31.6 6.6 88 33-134 17-105 (165) 103 cd00395 Tyr_Trp_RS_core Tyrosi 94.7 0.017 4.3E-07 37.6 1.9 69 258-333 142-214 (274) 104 cd00805 TyrRS_core Tyrosinyl-t 94.4 0.12 3E-06 31.3 5.7 47 258-312 151-204 (268) 105 PRK12283 tryptophanyl-tRNA syn 94.4 0.41 1E-05 27.4 8.3 29 297-330 259-287 (398) 106 pfam00579 tRNA-synt_1b tRNA sy 94.1 0.092 2.4E-06 32.1 4.6 42 5-52 4-46 (291) 107 cd00806 TrpRS_core Tryptophany 94.1 0.021 5.3E-07 36.9 1.2 57 258-315 139-206 (282) 108 PRK00927 tryptophanyl-tRNA syn 93.9 0.42 1.1E-05 27.3 7.6 33 284-316 169-209 (325) 109 PRK05912 tyrosyl-tRNA syntheta 93.8 0.03 7.7E-07 35.7 1.6 75 6-87 34-110 (402) 110 COG0162 TyrS Tyrosyl-tRNA synt 93.7 0.031 7.9E-07 35.6 1.6 74 4-85 32-108 (401) 111 PRK12556 tryptophanyl-tRNA syn 93.7 0.022 5.5E-07 36.8 0.6 33 284-316 180-215 (328) 112 PRK13354 tyrosyl-tRNA syntheta 92.5 0.36 9.2E-06 27.7 5.5 52 257-315 185-243 (405) 113 COG0180 TrpS Tryptophanyl-tRNA 92.5 0.047 1.2E-06 34.3 0.9 35 284-318 177-215 (314) 114 PRK05912 tyrosyl-tRNA syntheta 92.2 0.4 1E-05 27.4 5.4 52 257-315 181-239 (402) 115 PRK08560 tyrosyl-tRNA syntheta 91.9 0.075 1.9E-06 32.8 1.4 60 257-318 169-237 (333) 116 COG0162 TyrS Tyrosyl-tRNA synt 90.8 0.71 1.8E-05 25.6 5.5 52 257-315 180-237 (401) 117 pfam05746 DALR_1 DALR anticodo 90.7 1.3 3.4E-05 23.6 11.5 57 383-442 30-86 (117) 118 cd00807 Gln_GluRS_non_core Glu 88.3 0.16 4.1E-06 30.4 0.6 69 278-347 141-225 (238) 119 pfam09190 DALR_2 DALR domain. 86.9 1.3 3.4E-05 23.5 4.6 30 401-430 2-32 (62) 120 cd00808 GluRS_core Descriminat 86.7 0.18 4.5E-06 30.1 0.0 69 278-348 138-210 (239) 121 smart00836 DALR_1 DALR anticod 85.6 2.7 6.8E-05 21.3 12.0 49 384-432 35-83 (122) 122 cd03802 GT1_AviGT4_like This f 84.4 2.3 5.9E-05 21.8 4.9 45 6-52 2-46 (335) 123 COG0751 GlyS Glycyl-tRNA synth 84.0 3.1 8E-05 20.8 7.6 85 362-449 584-671 (691) 124 PRK01233 glyS glycyl-tRNA synt 83.8 3.2 8.1E-05 20.8 7.8 64 384-450 605-668 (687) 125 cd02067 B12-binding B12 bindin 83.1 2.8 7.2E-05 21.1 4.9 73 16-118 7-79 (119) 126 PRK12285 tryptophanyl-tRNA syn 81.8 0.56 1.4E-05 26.3 0.9 66 262-329 210-280 (369) 127 smart00840 DALR_2 This DALR do 81.4 3.9 9.9E-05 20.1 5.2 28 401-428 2-30 (56) 128 PRK09620 hypothetical protein; 80.1 3.3 8.3E-05 20.7 4.3 48 4-51 3-52 (229) 129 PRK05818 DNA polymerase III su 79.0 2.3 5.8E-05 21.9 3.2 121 296-439 94-214 (262) 130 cd07963 Anticodon_Ia_Cys Antic 79.0 4.6 0.00012 19.6 6.1 34 396-429 33-67 (156) 131 cd02071 MM_CoA_mut_B12_BD meth 76.3 5.4 0.00014 19.1 4.6 64 31-118 16-79 (122) 132 KOG2144 consensus 75.8 1.1 2.9E-05 24.1 1.0 63 249-313 169-234 (360) 133 TIGR01825 gly_Cac_T_rel pyrido 75.5 5.7 0.00014 18.9 5.5 15 73-87 76-90 (392) 134 KOG2145 consensus 73.2 2.9 7.3E-05 21.1 2.5 47 283-329 257-306 (397) 135 pfam06940 DUF1287 Domain of un 73.0 2.7 6.8E-05 21.3 2.3 29 13-44 22-50 (164) 136 cd02070 corrinoid_protein_B12- 72.9 6.5 0.00017 18.5 6.1 34 56-89 14-48 (201) 137 PRK00726 murG N-acetylglucosam 72.6 6.5 0.00017 18.4 4.2 38 5-52 2-39 (359) 138 PRK02261 methylaspartate mutas 71.5 6.4 0.00016 18.5 3.9 82 3-118 2-83 (137) 139 PTZ00126 tyrosyl-tRNA syntheta 71.0 7.1 0.00018 18.2 9.9 75 4-92 82-158 (399) 140 cd02167 NMNAT_NadR The NMNAT d 70.2 5.1 0.00013 19.2 3.2 50 18-81 8-58 (157) 141 cd02072 Glm_B12_BD B12 binding 70.1 7.4 0.00019 18.1 4.0 65 30-118 15-79 (128) 142 pfam04127 DFP DNA / pantothena 69.9 7.5 0.00019 18.0 4.4 49 4-52 2-52 (197) 143 TIGR02407 ectoine_ectB diamino 69.0 3.5 8.8E-05 20.5 2.1 11 171-181 55-65 (413) 144 PRK06732 phosphopantothenate-- 67.3 8.4 0.00022 17.6 4.4 46 6-51 2-49 (228) 145 COG1453 Predicted oxidoreducta 67.0 8.5 0.00022 17.6 6.5 27 69-95 88-115 (391) 146 TIGR03326 rubisco_III ribulose 65.2 9.2 0.00023 17.3 4.4 13 65-77 24-36 (412) 147 pfam03698 UPF0180 Uncharacteri 61.8 8.3 0.00021 17.7 2.9 47 34-80 13-79 (80) 148 KOG2713 consensus 61.5 11 0.00027 16.9 8.0 88 6-106 14-106 (347) 149 pfam05559 DUF763 Protein of un 61.4 8.4 0.00022 17.6 2.9 15 16-30 3-17 (319) 150 PRK03094 hypothetical protein; 61.3 6.7 0.00017 18.4 2.4 47 34-80 13-79 (80) 151 COG2046 MET3 ATP sulfurylase ( 60.3 5.2 0.00013 19.2 1.7 11 467-477 367-377 (397) 152 cd03785 GT1_MurG MurG is an N- 59.7 11 0.00029 16.7 3.9 37 6-52 1-37 (350) 153 PRK10517 magnesium-transportin 57.8 12 0.00031 16.4 6.4 21 458-478 717-738 (900) 154 COG2185 Sbm Methylmalonyl-CoA 57.4 12 0.00032 16.4 5.5 82 3-118 11-92 (143) 155 pfam01134 GIDA Glucose inhibit 56.4 8.5 0.00022 17.6 2.2 22 23-49 8-29 (391) 156 TIGR02390 RNA_pol_rpoA1 DNA-di 56.0 13 0.00033 16.2 3.2 39 290-329 615-656 (901) 157 COG3911 Predicted ATPase [Gene 54.4 14 0.00035 16.1 4.1 18 35-52 26-43 (183) 158 PRK05429 gamma-glutamyl kinase 52.0 15 0.00038 15.8 10.3 109 1-120 5-135 (372) 159 TIGR01490 HAD-SF-IB-hyp1 HAD-s 51.2 15 0.00039 15.7 3.4 26 314-342 120-145 (204) 160 COG3110 Uncharacterized protei 50.8 6.7 0.00017 18.4 1.0 34 294-327 30-63 (216) 161 PRK09484 3-deoxy-D-manno-octul 49.5 16 0.00042 15.5 3.5 27 40-68 65-91 (186) 162 PRK00421 murC UDP-N-acetylmura 49.4 16 0.00042 15.5 3.0 34 34-70 24-57 (459) 163 PRK13475 ribulose bisphosphate 48.9 17 0.00042 15.5 6.0 41 35-79 5-48 (459) 164 pfam06948 consensus 48.7 17 0.00043 15.4 3.3 58 49-119 49-108 (112) 165 COG1778 Low specificity phosph 48.0 17 0.00044 15.4 4.6 85 6-92 9-100 (170) 166 PRK11890 phosphate acetyltrans 47.9 17 0.00044 15.3 2.7 87 29-118 9-96 (312) 167 TIGR01017 rpsD_bact ribosomal 47.4 7 0.00018 18.2 0.6 29 287-315 118-151 (217) 168 PRK12565 30S ribosomal protein 47.3 7.1 0.00018 18.2 0.6 30 287-316 106-140 (197) 169 pfam01515 PTA_PTB Phosphate ac 46.3 18 0.00046 15.2 5.0 92 32-125 5-99 (319) 170 COG1568 Predicted methyltransf 46.0 18 0.00047 15.1 3.1 53 104-156 49-103 (354) 171 PRK05579 bifunctional phosphop 44.9 19 0.00048 15.0 3.2 37 1-48 1-37 (392) 172 PRK01904 hypothetical protein; 44.4 14 0.00036 16.0 1.8 47 278-327 18-65 (217) 173 CHL00113 rps4 ribosomal protei 43.7 8 0.0002 17.8 0.4 30 286-315 106-140 (201) 174 TIGR02370 pyl_corrinoid methyl 43.0 7.6 0.00019 18.0 0.2 72 259-338 97-184 (201) 175 PRK03641 hypothetical protein; 42.6 15 0.00039 15.7 1.7 46 280-328 19-64 (220) 176 COG3286 Uncharacterized protei 42.4 21 0.00052 14.8 3.6 18 393-410 120-137 (204) 177 PRK08099 nicotinamide-nucleoti 42.4 21 0.00052 14.8 2.8 19 57-75 6-24 (411) 178 PRK05327 rpsD 30S ribosomal pr 42.0 8.6 0.00022 17.6 0.4 29 287-315 110-143 (201) 179 COG0317 SpoT Guanosine polypho 41.7 21 0.00054 14.7 2.8 13 66-78 83-95 (701) 180 pfam10009 DUF2252 Uncharacteri 41.4 21 0.00054 14.7 6.4 94 13-116 41-151 (383) 181 TIGR01819 F420_cofD LPPG:Fo 2- 41.3 12 0.00032 16.4 1.1 15 254-268 105-119 (359) 182 cd07018 S49_SppA_67K_type Sign 41.3 21 0.00055 14.6 3.7 11 312-322 121-131 (222) 183 KOG0517 consensus 40.6 22 0.00056 14.6 3.1 30 330-361 759-788 (2473) 184 pfam03185 CaKB Calcium-activat 40.3 11 0.00028 16.8 0.7 16 268-283 166-181 (201) 185 TIGR01316 gltA glutamate synth 39.6 4.9 0.00013 19.4 -1.2 45 283-327 187-235 (462) 186 TIGR01510 coaD_prev_kdtB pante 39.5 18 0.00047 15.1 1.8 61 18-94 9-71 (163) 187 TIGR01057 topA_arch DNA topois 39.2 23 0.00059 14.4 3.2 51 42-92 97-155 (637) 188 pfam05045 RgpF Rhamnan synthes 38.6 23 0.0006 14.4 3.9 17 156-172 185-201 (498) 189 PRK08655 prephenate dehydrogen 38.0 24 0.00061 14.3 3.7 36 30-68 12-47 (441) 190 PRK09549 mtnW 2,3-diketo-5-met 37.7 24 0.00061 14.3 5.9 33 292-325 262-298 (411) 191 TIGR03006 pepcterm_polyde poly 37.7 24 0.00062 14.3 3.4 55 58-118 11-74 (274) 192 PRK00168 coaD phosphopantethei 37.3 24 0.0006 14.3 2.0 27 18-51 11-37 (159) 193 pfam00797 Acetyltransf_2 N-ace 36.4 21 0.00054 14.7 1.7 13 76-88 52-64 (240) 194 pfam11062 DUF2863 Protein of u 35.9 13 0.00033 16.3 0.5 11 463-473 360-370 (398) 195 pfam10266 Strumpellin Heredita 35.5 26 0.00066 14.0 6.5 26 42-69 271-296 (1080) 196 PRK12496 hypothetical protein; 35.5 26 0.00066 14.0 4.1 28 127-159 130-157 (166) 197 cd02163 PPAT_a Phosphopantethe 34.9 26 0.00066 14.0 1.9 18 18-41 8-25 (152) 198 TIGR02930 vnfG_nitrog V-contai 34.9 26 0.00068 14.0 2.9 36 368-405 34-69 (109) 199 TIGR02294 nickel_nikA nickel A 34.8 22 0.00055 14.6 1.5 55 153-218 139-193 (513) 200 PRK13402 gamma-glutamyl kinase 34.3 27 0.00069 13.9 9.1 112 1-120 2-128 (363) 201 COG1415 Uncharacterized conser 34.2 27 0.00069 13.9 2.1 33 390-424 336-368 (373) 202 TIGR02701 shell_carb_anhy carb 34.0 24 0.00062 14.2 1.7 27 21-47 53-83 (463) 203 TIGR00373 TIGR00373 conserved 33.9 27 0.0007 13.8 4.8 107 49-159 12-142 (168) 204 PRK11823 DNA repair protein Ra 32.8 29 0.00073 13.7 4.0 29 290-318 210-239 (454) 205 TIGR02889 spore_YpeB germinati 32.4 29 0.00074 13.7 3.4 30 173-203 225-254 (465) 206 cd03784 GT1_Gtf_like This fami 32.3 29 0.00074 13.7 3.0 48 6-68 2-49 (401) 207 PRK10949 protease 4; Provision 32.2 29 0.00074 13.6 2.2 41 76-116 185-238 (618) 208 pfam03492 Methyltransf_7 SAM d 32.1 29 0.00075 13.6 7.1 17 98-114 27-43 (331) 209 KOG4284 consensus 31.8 30 0.00075 13.6 1.9 31 21-51 262-305 (980) 210 cd03817 GT1_UGDG_like This fam 31.6 30 0.00076 13.6 4.8 42 6-53 1-42 (374) 211 cd01947 Guanosine_kinase_like 31.6 30 0.00076 13.6 4.0 57 11-67 17-77 (265) 212 TIGR02884 spore_pdaA delta-lac 31.5 15 0.00039 15.7 0.3 44 74-120 49-92 (225) 213 TIGR01405 polC_Gram_pos DNA po 31.2 30 0.00077 13.5 2.1 34 125-158 716-755 (1264) 214 TIGR01522 ATPase-IIA2_Ca calci 30.8 31 0.00078 13.5 5.5 26 315-341 467-492 (856) 215 PRK04527 argininosuccinate syn 30.7 31 0.00078 13.5 7.6 86 31-117 16-110 (397) 216 TIGR02995 ectoine_ehuB ectoine 30.7 29 0.00074 13.7 1.6 34 187-227 58-93 (285) 217 cd03822 GT1_ecORF704_like This 30.7 31 0.00078 13.5 4.5 40 6-52 1-40 (366) 218 KOG0572 consensus 30.6 31 0.00079 13.5 4.5 79 3-92 87-169 (474) 219 COG0773 MurC UDP-N-acetylmuram 30.5 31 0.00079 13.5 2.7 36 31-69 20-55 (459) 220 PRK10872 relA GDP/GTP pyrophos 30.1 31 0.0008 13.4 3.6 31 384-414 470-505 (743) 221 PRK10132 hypothetical protein; 30.0 32 0.00081 13.4 5.7 50 384-436 40-89 (108) 222 TIGR02015 BchY chlorophyllide 29.9 32 0.00081 13.4 1.9 33 381-413 325-363 (426) 223 PRK08271 anaerobic ribonucleos 29.8 32 0.00081 13.4 3.0 14 110-123 96-109 (625) 224 pfam08673 RsbU_N Phosphoserine 29.4 32 0.00082 13.3 4.1 45 31-81 5-49 (77) 225 COG4352 RPL13 Ribosomal protei 29.0 33 0.00083 13.3 3.3 36 85-120 77-112 (113) 226 KOG2623 consensus 28.8 33 0.00084 13.3 6.0 22 295-316 265-287 (467) 227 COG4889 Predicted helicase [Ge 28.7 33 0.00084 13.2 1.8 72 34-110 272-345 (1518) 228 COG0474 MgtA Cation transport 28.7 33 0.00084 13.2 5.3 11 463-473 727-737 (917) 229 COG5270 PUA domain (predicted 28.6 17 0.00044 15.3 0.2 36 114-158 2-37 (202) 230 pfam11243 DUF3045 Protein of u 28.2 34 0.00086 13.2 1.8 27 98-124 27-54 (90) 231 TIGR01511 ATPase-IB1_Cu copper 28.2 34 0.00086 13.2 4.8 10 228-237 205-214 (545) 232 TIGR01027 proB glutamate 5-kin 27.8 34 0.00088 13.1 8.0 103 10-120 9-131 (379) 233 PRK05192 tRNA uridine 5-carbox 27.7 34 0.00088 13.1 2.8 18 311-328 411-428 (621) 234 KOG2384 consensus 27.1 35 0.0009 13.0 3.6 27 41-67 32-58 (223) 235 COG1819 Glycosyl transferases, 27.0 35 0.0009 13.0 4.1 39 4-52 1-39 (406) 236 KOG0780 consensus 26.8 36 0.00091 13.0 4.9 30 58-88 35-64 (483) 237 cd03450 NodN NodN (nodulation 26.6 12 0.0003 16.6 -1.0 60 286-348 53-115 (149) 238 pfam09176 Mpt_N Methylene-tetr 26.3 22 0.00056 14.5 0.4 39 14-54 17-55 (81) 239 TIGR02967 guan_deamin guanine 26.2 28 0.00071 13.8 0.9 23 191-214 167-191 (426) 240 cd01095 Nitrilotriacetate_mono 26.1 37 0.00093 12.9 1.9 22 188-209 95-118 (358) 241 TIGR03332 salvage_mtnW 2,3-dik 26.0 37 0.00094 12.9 5.2 25 302-326 270-298 (407) 242 TIGR00108 eRF peptide chain re 26.0 30 0.00076 13.6 1.0 22 294-315 145-168 (425) 243 COG5200 LUC7 U1 snRNP componen 25.9 37 0.00094 12.9 2.2 24 299-326 48-71 (258) 244 TIGR03528 2_3_DAP_am_ly diamin 25.6 37 0.00095 12.9 1.6 14 470-483 360-373 (396) 245 cd03821 GT1_Bme6_like This fam 25.6 37 0.00095 12.9 4.5 41 6-52 1-41 (375) 246 PRK12446 N-acetylglucosaminyl 25.3 38 0.00096 12.8 2.9 38 5-52 2-39 (352) 247 TIGR02295 HpaD 3,4-dihydroxyph 25.2 28 0.00071 13.8 0.7 47 285-349 244-295 (312) 248 pfam00998 RdRP_3 Viral RNA dep 25.2 38 0.00097 12.8 2.8 18 298-315 263-284 (485) 249 TIGR02058 lin0512_fam conserve 25.0 33 0.00085 13.2 1.1 16 49-64 9-24 (120) 250 COG1066 Sms Predicted ATP-depe 25.0 38 0.00098 12.8 4.8 68 18-90 100-170 (456) 251 TIGR03612 RutA pyrimidine util 24.9 30 0.00078 13.5 0.9 16 188-203 93-110 (355) 252 cd03794 GT1_wbuB_like This fam 24.8 38 0.00098 12.8 4.5 43 6-54 1-43 (394) 253 pfam09363 XFP_C XFP C-terminal 24.6 35 0.0009 13.0 1.2 48 270-330 106-155 (203) 254 PRK08942 D,D-heptose 1,7-bisph 24.6 39 0.00099 12.7 4.6 52 32-93 36-87 (181) 255 cd02172 RfaE_N RfaE is a prote 24.3 39 0.001 12.7 3.1 41 2-53 1-42 (143) 256 COG2176 PolC DNA polymerase II 24.3 39 0.001 12.7 2.0 33 125-157 913-949 (1444) 257 PRK06526 transposase; Provisio 24.2 39 0.001 12.7 5.4 51 32-90 6-65 (254) 258 COG1850 RbcL Ribulose 1,5-bisp 24.2 40 0.001 12.7 4.9 14 65-78 32-45 (429) 259 COG0522 RpsD Ribosomal protein 24.0 25 0.00064 14.1 0.3 34 288-328 113-146 (205) 260 cd01302 Cyclic_amidohydrolases 24.0 35 0.00089 13.1 1.0 32 311-342 267-301 (337) 261 cd01121 Sms Sms (bacterial rad 23.5 41 0.001 12.6 3.3 38 290-327 203-241 (372) 262 PRK12314 gamma-glutamyl kinase 23.4 41 0.001 12.6 8.2 113 1-120 6-136 (265) 263 COG3980 spsG Spore coat polysa 23.4 41 0.001 12.6 2.7 30 19-52 12-42 (318) 264 PRK08181 transposase; Validate 23.3 41 0.001 12.6 6.7 34 57-90 30-72 (269) 265 PRK09850 hypothetical protein; 23.2 41 0.001 12.5 4.6 68 1-68 1-82 (313) 266 COG4671 Predicted glycosyl tra 23.2 41 0.001 12.5 2.6 43 2-51 7-50 (400) 267 PRK06939 2-amino-3-ketobutyrat 23.0 42 0.0011 12.5 5.9 10 298-307 140-149 (395) 268 PRK09183 transposase/IS protei 22.9 42 0.0011 12.5 5.8 34 57-90 26-68 (258) 269 PRK05629 hypothetical protein; 22.8 42 0.0011 12.5 3.8 43 284-327 102-146 (331) 270 cd04962 GT1_like_5 This family 22.4 43 0.0011 12.4 4.4 38 6-52 2-39 (371) 271 smart00345 HTH_GNTR helix_turn 22.2 43 0.0011 12.4 2.9 25 104-128 35-59 (60) 272 cd03796 GT1_PIG-A_like This fa 22.1 43 0.0011 12.4 4.3 40 6-51 1-40 (398) 273 cd03795 GT1_like_4 This family 22.0 43 0.0011 12.4 4.6 41 6-52 1-41 (357) 274 PRK13964 coaD phosphopantethei 21.9 44 0.0011 12.4 1.9 20 18-43 11-30 (140) 275 PRK11367 hypothetical protein; 21.7 37 0.00094 12.9 0.8 18 72-89 35-52 (476) 276 PRK05664 threonine-phosphate d 21.4 43 0.0011 12.4 1.1 25 53-77 3-27 (330) 277 COG3917 NahD 2-hydroxychromene 21.2 29 0.00074 13.7 0.2 23 220-242 2-26 (203) 278 TIGR00644 recJ single-stranded 21.1 45 0.0012 12.2 4.6 65 27-91 68-141 (705) 279 cd01945 ribokinase_group_B Rib 21.0 45 0.0012 12.2 3.6 58 11-68 17-78 (284) 280 smart00775 LNS2 LNS2 domain. T 21.0 45 0.0012 12.2 1.9 11 108-118 34-44 (157) 281 cd06217 FNR_iron_sulfur_bindin 20.9 46 0.0012 12.2 2.7 12 472-483 218-229 (235) 282 pfam01467 CTP_transf_2 Cytidyl 20.9 46 0.0012 12.2 3.1 27 18-50 7-34 (148) 283 pfam10929 DUF2811 Protein of u 20.9 19 0.0005 14.9 -0.8 11 201-211 40-50 (57) 284 PRK00448 polC DNA polymerase I 20.9 46 0.0012 12.2 2.4 32 126-157 907-942 (1436) 285 KOG0743 consensus 20.8 46 0.0012 12.2 3.2 32 390-421 398-431 (457) 286 pfam01135 PCMT Protein-L-isoas 20.7 46 0.0012 12.2 3.1 11 109-119 6-16 (205) 287 pfam06354 consensus 20.3 47 0.0012 12.1 3.3 23 48-70 60-82 (429) 288 cd03808 GT1_cap1E_like This fa 20.3 47 0.0012 12.1 2.8 25 30-54 15-39 (359) 289 cd01174 ribokinase Ribokinase 20.2 47 0.0012 12.1 3.7 35 35-69 43-79 (292) 290 cd01172 RfaE_like RfaE encodes 20.0 47 0.0012 12.1 3.7 37 33-69 44-82 (304) No 1 >PRK12267 methionyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=1123.32 Aligned_cols=503 Identities=46% Similarity=0.867 Sum_probs=481.7 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 88179978889999883222478978999999998858980362364370227999999983999899999999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM 83 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 83 (511) +|||+||||+|||||+||||||++++++||++||+||+|++|+|+||+|+||+||+++|+++|++|+|+|+++++.|+++ T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~g~tP~e~~d~~~~~~~~~ 82 (644) T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEAGITPQEYVDEISAGFKDL 82 (644) T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99989968998889985545348789999999999846997598487687529999999985999999999999999999 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCC Q ss_conf 99808898867477888899999999888754310221100010113343015566721112222222233200003454 Q gi|255764461|r 84 ADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEE 163 (511) Q Consensus 84 ~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~ 163 (511) |+++||++|.|+||++++|++.||++|++|+++|+||+++++|+||+.|++|++++++.. +..|..||+|+++++++ T Consensus 83 ~~~l~Is~D~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d---~g~cp~cg~~~e~~~ee 159 (644) T PRK12267 83 WDKLDISYDKFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVD---GGKCPDSGHEVELVKEE 159 (644) T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCC---CCCCCCCCCCCEEECCC T ss_conf 998699678785489889999999999999988997866551232587543336244045---78687789976464056 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 4344666444443444333321000676545775-410345675323433377765786422214646024443220012 Q gi|255764461|r 164 GYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTT 242 (511) Q Consensus 164 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~-~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~ 242 (511) ||||+|++|+++|.+|++++++++.|..++|++. +|+++||+||||||++++||||||++|+||+||||||++||+|+. T Consensus 160 ~yffkL~~~~~~L~~~~~~~p~~i~p~~~~ne~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Yisa~ 239 (644) T PRK12267 160 SYFFRMSKYADRLLEFYEENPDFIQPESRKNEMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNYITAL 239 (644) T ss_pred CEEEEHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH T ss_conf 51443466789999999609974676258879999998577855430247788888578987607998422430034341 Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCC Q ss_conf 34676543100024110000456432100010247765433101232333430330586010000022111000000221 Q gi|255764461|r 243 GYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGV 322 (511) Q Consensus 243 ~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~ 322 (511) +|..+....+.+|||.++||+||||++||+++|||||+++|+++|++|++|||++.+|+|||||+||+|+|.+++++||+ T Consensus 240 g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i~wpamL~~~~~~~p~~v~~hg~~~~~g~KmSKS~Gn~i~~~~~~~~~g~ 319 (644) T PRK12267 240 GYGSDDDELFMKFWPADVHLVGKDILRFHAIYWPIMLMALDLPLPKHLFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGL 319 (644) T ss_pred CCCCCCCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCEEECCCCEECCCCCCEECHHHHHHHCCC T ss_conf 38621226677637313302685532366889999999769998644510441871786005536842237999875594 Q ss_pred CCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 11211100002478730111222111001332110221021345565312332103455589556566789999999999 Q gi|255764461|r 323 DALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIR 402 (511) Q Consensus 323 D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~ 402 (511) |++||||++..|+++|.+|||++|++|+|+||+|++|||+||+++|+.|+|+|.+|......+.|..++..+.++.+++. T Consensus 320 D~lRyyl~~~~~~~~D~dfs~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~ 399 (644) T PRK12267 320 DALRYYLLREVPFGSDGDFSPEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYE 399 (644) T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 04364644448878777789999999988998877778999999998875188678887787456999999999999999 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC--CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC Q ss_conf 8775035899999999999999788654187012169--99999999999999999999985432248999999984988 Q gi|255764461|r 403 ENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKT--NPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA 480 (511) Q Consensus 403 ~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~--d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~ 480 (511) ++|++++|++|+++||++++.+|+|++.++||+|+|+ +++++++||+++++++|.+++||+||||.+|++||++||++ T Consensus 400 ~~~~~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~ 479 (644) T PRK12267 400 EAMEALQFSRALEELWKLISRANKYIDETAPWVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLE 479 (644) T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC T ss_conf 99971269999999999999999988857887663686629999999999999999999970683657999999981999 Q ss_pred CCCCCHHHHCC--CCCCCCCCCCCCCCCCCCC Q ss_conf 00079555101--2689973368777643234 Q gi|255764461|r 481 DENRCFQSLDQ--RLKPGFMLHKTFDPIFPRF 510 (511) Q Consensus 481 ~~~~~~~~~~~--~l~~~~~i~~~~epLF~Ri 510 (511) .....|+++.. .+.+|+.+.+ ++|||+|| T Consensus 480 ~~~~~~~~~~~~~~l~~g~~i~~-~~~LF~ri 510 (644) T PRK12267 480 IELTSWESLLAFGGLPAGTKVAK-GEPLFPRL 510 (644) T ss_pred CCCCCHHHHHHHCCCCCCCCCCC-CCCCCCCC T ss_conf 75466455444256889982688-88786754 No 2 >PRK00133 metG methionyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=1103.69 Aligned_cols=495 Identities=28% Similarity=0.536 Sum_probs=460.1 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 81799788899998832224789789999999988589803623643702279999999839998999999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA 84 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 84 (511) ||||||||+|||||+||||||++|+++|+++||+||+|++|+|+||||+||+||+++|+++|++|+|+|++|++.|+++| T Consensus 2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~~g~tp~e~~d~~~~~~~~~~ 81 (666) T PRK00133 2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (666) T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 87798179878889843124676999999999998369954984742788489999999859999999999999999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC--------CCCCCCC---- Q ss_conf 9808898867477888899999999888754310221100010113343015566721112--------2222222---- Q gi|255764461|r 85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA--------DGQYYNA---- 152 (511) Q Consensus 85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~--------~~~~~~~---- 152 (511) +++||++|.|+||++++|++.||++|.+|+++|+||+++++|+||+.|++||+|++|.+.| .|..|+. T Consensus 82 ~~l~Is~D~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V~GtCP~C~~~~~~GD~Ce~cG~~ 161 (666) T PRK00133 82 AGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (666) T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCC T ss_conf 98399578785789889999999999999978998974035556687565525423420257778712048742245651 Q ss_pred -------------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf -------------3320000345443446664444434443333210006765457754103456753234333777657 Q gi|255764461|r 153 -------------QHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIK 219 (511) Q Consensus 153 -------------~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGip 219 (511) ||+|+++++++||||+|++|+++|++|+++++ +|.++++++.+|+++||+||||||+..||||| T Consensus 162 ~~p~eL~~p~~~~~g~~~e~~~~e~~ff~Ls~~~~~L~~~~~~~~---~~~~~~n~~~~~l~~gL~D~~ISR~~~W~Gip 238 (666) T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPDFEEFLKEWTRSGA---LQPNVANKMKEWLEEGLQDWDISRDAPYFGFE 238 (666) T ss_pred CCCHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHCCCCCCCEEEECCCCCEE T ss_conf 673442386434579851660353333138777789987510488---98789999999985788775304027844458 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCCC-----HHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 86422214646024443220012346765-43100024110-----0004564321000102477654331012323334 Q gi|255764461|r 220 IPDDPQYIMYVWIDALTNYLTTTGYLDNP-DGSKAKFWPAD-----LHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSH 293 (511) Q Consensus 220 iP~~~~~~~YVWfDa~~gY~s~~~~~~~~-~~~~~~~w~~d-----~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~ 293 (511) ||++++||+|||||||+||+|++..+++. ...+..|||.| +|||||||++||+|+|||||+++|+++|++|++| T Consensus 239 vP~~~~kv~YVW~DA~igYis~t~~~~~~~~~~~~~~W~~d~~~~~vhfiGKDii~FH~i~wPa~L~~~g~~lP~~v~~h 318 (666) T PRK00133 239 IPGAPGKVFYVWLDAPIGYISSTKNLCDKRGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAH 318 (666) T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 88987648999615645377764433143565587638899876336753443114647679999984677888612114 Q ss_pred CCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCC-CCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHC Q ss_conf 3033058601000002211100000022111211100002478-730111222111001332110221021345565312 Q gi|255764461|r 294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACG-KDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKD 372 (511) Q Consensus 294 g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~-~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~ 372 (511) |||+.+|+|||||+||+|+|.+++++||+|++||||++..|.+ +|++|||++|++++|+||+|++|||+||+++|+.|+ T Consensus 319 g~l~~~G~KmSKS~Gnvv~p~~~l~~yg~D~lRY~l~~~~p~~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~~~~~k~ 398 (666) T PRK00133 319 GFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPSRIDDIDFNWEDFQQRVNSDLVGKLVNFASRAAGFINKR 398 (666) T ss_pred CCEEECCEEEECCCCEEEEHHHHHHHCCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 64877880600126717617999986696453020331078987677869999999986888876668999999999986 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH--HHHHHHH Q ss_conf 33210345558955656678999999999987750358999999999999997886541870121699999--9999999 Q gi|255764461|r 373 YDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDR--ASTVLYV 450 (511) Q Consensus 373 ~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~--~~~vl~~ 450 (511) |+|.+|.. ..|..++..+.++.+++.++|++++|++|++.||++++.+|+||+.++||+|+|+++++ +.+|||+ T Consensus 399 ~~g~vp~~----~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~~~NkYi~~~~PW~L~K~d~~~~~l~~Vl~~ 474 (666) T PRK00133 399 FDGKLPDE----LADPELLEEFRAAAESIAEAYEAREFRKALREIMALADRANKYVDDKEPWKLAKQEGEDAALQEVCSV 474 (666) T ss_pred CCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHH T ss_conf 59978997----45899999999999999999981069999999999999998887744876553685668999999999 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 999999999985432248999999984988000795551012689973368777643234 Q gi|255764461|r 451 TVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHKTFDPIFPRF 510 (511) Q Consensus 451 ~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~~l~~~~~i~~~~epLF~Ri 510 (511) +++++|.+++||+||||.+|++||++||+++ ..|+++... .+|+.+.+ ++|||+|| T Consensus 475 ~le~lr~laiLL~PfmP~~a~ki~~~Lg~~~--~~~~~~~~~-~~g~~i~~-~~pLF~ri 530 (666) T PRK00133 475 GLNLFRALAIYLKPVLPELAERAEAFLNVEE--LTWDDAGQP-LLGHKINK-FKILFTRI 530 (666) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--CCHHHHCCC-CCCCCCCC-CCCCCCCC T ss_conf 9999999999723867378999999809896--785674577-78987688-77786756 No 3 >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=100.00 E-value=0 Score=1105.45 Aligned_cols=509 Identities=46% Similarity=0.854 Sum_probs=477.1 Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 98888179978889999883222478978999999998858980362364370227999999983999899999999999 Q gi|255764461|r 1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 1 m~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) |+.++||+||||+|||||+|||||+.++|+|||++||+||+|++|+|+||||+||+||+++|+++|++|+|+|++|++.| T Consensus 1 ~~~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~ 80 (558) T COG0143 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEF 80 (558) T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99787389955898899986413678887899999999826975899951478777889999985999899999999999 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC--------CCCCCC Q ss_conf 999998088988674778888999999998887543102211000101133430155667211122--------222222 Q gi|255764461|r 81 RDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD--------GQYYNA 152 (511) Q Consensus 81 ~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~--------~~~~~~ 152 (511) +++++++||+||.|+||++++|++.||++|.+|+++|+||+++++|+||+.|++|++|++|.+.|+ |..|+. T Consensus 81 ~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~a~GD~Ce~ 160 (558) T COG0143 81 KELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCEN 160 (558) T ss_pred HHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCHHHH T ss_conf 99999809854300168977799999999999997898731443564735435645621020558986753457643432 Q ss_pred CC---------CCEECC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 33---------200003--------4544344666444443444333321000676545775410345675323433377 Q gi|255764461|r 153 QH---------NPVQWM--------EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFD 215 (511) Q Consensus 153 ~~---------~p~~~~--------~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~ 215 (511) || +|++.+ +++||||+|++|+++|++|+++++.+++|.++++++.+|+++||+||||||++++ T Consensus 161 Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~ 240 (558) T COG0143 161 CGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLD 240 (558) T ss_pred CCCCCCCHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCC T ss_conf 26757921217981686479764335405998879869999999973965458868999999999766866431458988 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCCCCCCCCCC----HHCCCCCCCCHHCCHHHHHHHHHHHHCCCC Q ss_conf 7657864222146460244432200123467--6543100024110----000456432100010247765433101232 Q gi|255764461|r 216 WGIKIPDDPQYIMYVWIDALTNYLTTTGYLD--NPDGSKAKFWPAD----LHVIGKDILRFHAIYWPAFLLSANLPLPKK 289 (511) Q Consensus 216 WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~--~~~~~~~~~w~~d----~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~ 289 (511) ||||||++|+||||||||||+||||++++++ .....+.+||+.+ +|||||||++||||+||||||++|+++|++ T Consensus 241 WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~ 320 (558) T COG0143 241 WGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTR 320 (558) T ss_pred CCCCCCCCCCCEEEEEECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCE T ss_conf 77257999987799963448899999541210587678986377888459999624567432457899997389998877 Q ss_pred CCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHH Q ss_conf 33343033058601000002211100000022111211100002478730111222111001332110221021345565 Q gi|255764461|r 290 VFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMI 369 (511) Q Consensus 290 i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~ 369 (511) |++||||+++|+||||||||+|||.++++.||+|++||||++.+|+++|++||+++|++++|++|+|++|||+||+++|+ T Consensus 321 i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi 400 (558) T COG0143 321 IFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFI 400 (558) T ss_pred EEEEEEEEECCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98401399779412442881871799998748238579888737788888889999999998998878889999999999 Q ss_pred HHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC-HHHHHHH Q ss_conf 3123321034555-8955656678999999999987750358999999999999997886541870121699-9999999 Q gi|255764461|r 370 LKDYDGMIPTPGA-FTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTN-PDRASTV 447 (511) Q Consensus 370 ~k~~~g~ip~~~~-~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d-~~~~~~v 447 (511) .|+|+|++|.... ..+.|+.+++.+.++.+.+.++|++++|++|++.+|++++.+|+||+.++||+|+|++ +++++++ T Consensus 401 ~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~v 480 (558) T COG0143 401 NKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATV 480 (558) T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHH T ss_conf 75259968865455534569999999999999999998625999999999999999887642898023204729999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC--CCHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 999999999999985432248999999984988000--795551012689973368777643234 Q gi|255764461|r 448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVADEN--RCFQSLDQRLKPGFMLHKTFDPIFPRF 510 (511) Q Consensus 448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~--~~~~~~~~~l~~~~~i~~~~epLF~Ri 510 (511) |+++++++|.+++||+||||.+|++||++||.+... .+|......+.+++.+.+ .+|||+|| T Consensus 481 l~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~lF~ri 544 (558) T COG0143 481 LYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGHKLGP-PEPLFPRI 544 (558) T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCC-CCCCCCCC T ss_conf 99999999999998158686029999998288633210003442035677741687-66675646 No 4 >TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=100.00 E-value=0 Score=1099.12 Aligned_cols=503 Identities=39% Similarity=0.743 Sum_probs=456.3 Q ss_pred EEEECCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH Q ss_conf 79978889999883222478-978999999998858980362364370227999999983999-8999999999999999 Q gi|255764461|r 7 LYISTAIAYPNAQPHIGHAY-EMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT-TKVFVDQNSRNFRDMA 84 (511) Q Consensus 7 ~~vt~~~Py~ng~lHlGH~~-~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~-p~e~~~~~~~~~~~~~ 84 (511) ++||||+|||||.+|||||+ ++|+|||++||+||+|++|+||||||+||+||+++|+++|+| |+++|++|++.|+++| T Consensus 1 ~liTtpl~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~g~tqP~~~vd~~~~~f~~~~ 80 (573) T TIGR00398 1 ILITTPLPYANGKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTQPKELVDKYHEEFKKLW 80 (573) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 91005776678711210366777899999999852897478985134468788886987089964899999999999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHH-----HHCCCC--------CCCCCC Q ss_conf 9808898867477888899999999888754310221100010113343015566-----721112--------222222 Q gi|255764461|r 85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDD-----EVYKGA--------DGQYYN 151 (511) Q Consensus 85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~-----~v~~~~--------~~~~~~ 151 (511) +.|||+||.|+||+|++|++.||++|++|.+||+||+++++|+|||.|++|++|+ ++.+.| .|++|+ T Consensus 81 ~~lnI~fD~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP~c~~~~~~gd~c~ 160 (573) T TIGR00398 81 KWLNISFDRFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYVEGTCPKCGSEDARGDHCE 160 (573) T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 87284567654676888899999999998753774110035323475665362232001334674886887777787755 Q ss_pred CCC---CCEECC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHH-HHHCCCCCCCCCCCCC Q ss_conf 233---200003--------------45443446664444434443333210006-7654577-5410345675323433 Q gi|255764461|r 152 AQH---NPVQWM--------------EEEGYFFRLSAYQDKLLSYYESHPEFILP-IERRNEV-ISFVKSGLKDLSLSRK 212 (511) Q Consensus 152 ~~~---~p~~~~--------------~~~~~f~~l~~~~~~l~~~~~~~~~~~~p-~~~~~~~-~~wl~~gl~Dw~ISR~ 212 (511) .|| +|++++ +++|+||+|++|+++|.+|++.++....+ +++++.+ .+|+++||+||||||+ T Consensus 161 ~Cg~~leP~~Li~P~c~~~~~~~~~~~~~hyFf~L~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~GL~D~~ItR~ 240 (573) T TIGR00398 161 VCGRHLEPFELINPRCVICKNKPELRDSEHYFFRLSAFEKELEEWIKKNPESKSPASNVKNVAKQNWIKGGLKDLAITRD 240 (573) T ss_pred CCCCCCCCCHHCCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECC T ss_conf 46553685001187025548800251354522353688899999861488424218999999889985068743011036 Q ss_pred CCC--CCCCCCCC--CCCCCCCCHHHHHHHHCCCCCCCCC---CCCCCCCCCCC------HHCCCCCCCCHHCCHHHHHH Q ss_conf 377--76578642--2214646024443220012346765---43100024110------00045643210001024776 Q gi|255764461|r 213 TFD--WGIKIPDD--PQYIMYVWIDALTNYLTTTGYLDNP---DGSKAKFWPAD------LHVIGKDILRFHAIYWPAFL 279 (511) Q Consensus 213 ~~~--WGipiP~~--~~~~~YVWfDa~~gY~s~~~~~~~~---~~~~~~~w~~d------~~~~G~Dii~Fh~i~~pa~l 279 (511) ..+ ||||||.+ |+|||||||||||||||+++-++.. ...+.+||+.+ ||||||||++|||||||||| T Consensus 241 ~~~lkWG~pvP~~~~p~~~~YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~~~~~~~HfIGKDI~~FH~iyWPa~L 320 (573) T TIGR00398 241 LVDLKWGIPVPNDGAPNKVVYVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNSEDAELIHFIGKDIVRFHTIYWPAML 320 (573) T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH T ss_conf 44121153178989879679987203456999975213356875789986268886502788842412020333445888 Q ss_pred HHHH--HHCCCCCCCCCCEEECCCCCCHHHCCCCCCCC-HHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHH Q ss_conf 5433--10123233343033058601000002211100-0000-221112111000024787301112221110013321 Q gi|255764461|r 280 LSAN--LPLPKKVFSHGFILHKGEKISKSLGNVIDPIE-VIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLA 355 (511) Q Consensus 280 ~~~~--~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e-~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~ 355 (511) +|+| +++|++|++||||++||+||||||||||+|.+ +++. ||+|.+||||+..+|.++|.+||+++|++|+|+||+ T Consensus 321 ~~~~eN~~lP~q~~~hGyl~~eG~KMSKS~G~vv~~~~~~~~~~~g~D~lRYYl~~~~~~~~D~~F~~~~f~~r~N~~L~ 400 (573) T TIGR00398 321 MGLGENLPLPTQVFAHGYLTVEGQKMSKSLGNVVDPEDDLLARGYGADILRYYLLKEVPLGKDGDFSWEDFVERVNADLA 400 (573) T ss_pred HHCCCHHHHHHHHEEEEEEEECCEEECCCCCCEECHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 51121002121324301688478443232475323217876447880578889986424344765688999999768877 Q ss_pred HHHHHCCHHHHHHHHHCCCCCCCCCCC--------------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 102210213455653123321034555--------------895565667899999999998775035899999999999 Q gi|255764461|r 356 NGIGNLVSRSVSMILKDYDGMIPTPGA--------------FTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV 421 (511) Q Consensus 356 ~~lgN~~~R~~~f~~k~~~g~ip~~~~--------------~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~ 421 (511) |+||||+||++.|+.|+|+|+++.... +.+.|..++..+++..+++.+++++++|++|+++||+++ T Consensus 401 n~lGNl~nR~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~~Al~~~~~L~ 480 (573) T TIGR00398 401 NDLGNLLNRTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKINETLEQIDKALESFEFRKALEEILKLA 480 (573) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 65558999999999887356211010123456666503765223566899999999999999886203899999999999 Q ss_pred HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHH--HCCCCCCC Q ss_conf 99978865418701216999999999999999---99999998543224899999998498800079555--10126899 Q gi|255764461|r 422 SEVDRYFDAQKPWELKKTNPDRASTVLYVTVE---VIRQLAILLQAFVPKLANKIFDILFVADENRCFQS--LDQRLKPG 496 (511) Q Consensus 422 ~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~---~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~--~~~~l~~~ 496 (511) +.+|+|||..+||++.|++ ++...+++++.. ++|.+++||+||||.+|++|.++||.+.+...+.. +.-....+ T Consensus 481 ~~gNkyi~~~~PW~l~k~~-~~~~~l~~~~~~~~e~~~~l~~Ll~P~~P~~~~k~~~~~n~~~~~~~~~~~~f~~~~~~~ 559 (573) T TIGR00398 481 DRGNKYIDDNEPWELAKQS-EKLKELLAVCSLVAELIRVLSILLYPFMPKLSEKILKLLNFELEFDNIRDSIFALKLLEG 559 (573) T ss_pred HHHHHHHHHCCCCEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC T ss_conf 9861476523887132570-679999999999999999999984241024789999983887013236777776556530 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 733687776432349 Q gi|255764461|r 497 FMLHKTFDPIFPRFL 511 (511) Q Consensus 497 ~~i~~~~epLF~Ri~ 511 (511) +.+.+ .++||+||- T Consensus 560 ~~~~~-~e~lf~k~~ 573 (573) T TIGR00398 560 HKLNK-AEPLFSKIE 573 (573) T ss_pred CCCCC-CCCCCCCCC T ss_conf 00123-335423479 No 5 >PRK11893 methionyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=1047.78 Aligned_cols=505 Identities=53% Similarity=0.983 Sum_probs=485.7 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 81799788899998832224789789999999988589803623643702279999999839998999999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA 84 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 84 (511) |||+||+|||||||+||||||++|+++||++||+||+|++|+|+||+|+||+||+.+|+++|++|+|+|++|++.|++++ T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 80 (512) T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEAGISPQELADRNSASFKRLW 80 (512) T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 97899689998899734463587999999999999559970746871775199999999859999999999999999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC-CCCCCCCCCCEECCCCC Q ss_conf 98088988674778888999999998887543102211000101133430155667211122-22222233200003454 Q gi|255764461|r 85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD-GQYYNAQHNPVQWMEEE 163 (511) Q Consensus 85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~-~~~~~~~~~p~~~~~~~ 163 (511) +++||++|.|+||++++|.+.||++|.+|+++|+||+++++|+||+.|++|+.++++.++.. ...|..||+|+++++++ T Consensus 81 ~~l~i~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~ 160 (512) T PRK11893 81 EALNISYDDFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEEE 160 (512) T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECC T ss_conf 98099888787799879999999999999767977432444322688644457777236657886555579977687247 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 43446664444434443333210006765457754103456753234333777657864222146460244432200123 Q gi|255764461|r 164 GYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTG 243 (511) Q Consensus 164 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~ 243 (511) ||||+|++++++|+++++++++++.|..+++++.+|+++||+|||||||+++||||+|++|+||+||||||++||+|+++ T Consensus 161 ~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~~ 240 (512) T PRK11893 161 SYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTALG 240 (512) T ss_pred CCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC T ss_conf 61120505467799997249865186999999999985778766152567878998888888620112531355677645 Q ss_pred CCCC-CCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCC Q ss_conf 4676-543100024110000456432100010247765433101232333430330586010000022111000000221 Q gi|255764461|r 244 YLDN-PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGV 322 (511) Q Consensus 244 ~~~~-~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~ 322 (511) +... ....+.++||.++||+|+||++||+++|||||+++|+++|+++++||||++||+|||||+||+|+|.|++++||+ T Consensus 241 ~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~~~p~~~~~hg~l~~~G~KmSKS~Gn~I~~~d~l~~yg~ 320 (512) T PRK11893 241 YDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTNDGQKMSKSLGNVIDPFDLVDKFGV 320 (512) T ss_pred CCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCCCCCCHHHHHHHCCC T ss_conf 88765647898448750432366512013888999998669998863431114887571501347875899999998595 Q ss_pred CCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 11211100002478730111222111001332110221021345565312332103455589556566789999999999 Q gi|255764461|r 323 DALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIR 402 (511) Q Consensus 323 D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~ 402 (511) |++||||++.+|+++|++||+++|++++|++|++++||+++|+.+|+.++++|.+|..+...+.|.+++++++++++++. T Consensus 321 D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~ 400 (512) T PRK11893 321 DAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVR 400 (512) T ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 04028776328877787878999998975899999999999999999875178788866588768999999999999999 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC Q ss_conf 87750358999999999999997886541870121699999999999999999999998543224899999998498800 Q gi|255764461|r 403 ENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE 482 (511) Q Consensus 403 ~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~ 482 (511) ++||+++|++|++.++++++.+|+|++..+||++.|++.++++++|++++++++.+++||+||||++|++||++||++++ T Consensus 401 ~~~e~~~~~~a~~~i~~~~~~~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~~ 480 (512) T PRK11893 401 EAMDNFAFHKALEAILELAAEANKYIDEQAPWSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEED 480 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC T ss_conf 99971259999999999999999998847875331589999999999999999999999858435999999998499987 Q ss_pred CCCHHHHCC--CCCCCCCCCCCCCCCCCCC Q ss_conf 079555101--2689973368777643234 Q gi|255764461|r 483 NRCFQSLDQ--RLKPGFMLHKTFDPIFPRF 510 (511) Q Consensus 483 ~~~~~~~~~--~l~~~~~i~~~~epLF~Ri 510 (511) .+.|.++.. .+++|+.+.+ ++|||+|| T Consensus 481 ~~~~~~~~~~~~l~~g~~i~~-~~~LF~ki 509 (512) T PRK11893 481 PRDFADLLAWGRLAPGTPLPK-PEPVFPRI 509 (512) T ss_pred CCCHHHHHCCCCCCCCCCCCC-CCCCCCCC T ss_conf 688567300267999599899-88888875 No 6 >PRK12268 methionyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=1041.61 Aligned_cols=502 Identities=32% Similarity=0.585 Sum_probs=469.7 Q ss_pred CEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 8179978889999883222478-978999999998858980362364370227999999983999899999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAY-EMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM 83 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~-~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 83 (511) +||+||||+|||||+|||||+. +|+++||++||+||+|++|+|+||+|+||+||+++|+++|++|+|+|+++++.++++ T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~ 82 (558) T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKED 82 (558) T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 51898479988889855231114198999999999837998797584064749999999985999999999999999999 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC--------CCC------ Q ss_conf 998088988674778888999999998887543102211000101133430155667211122--------222------ Q gi|255764461|r 84 ADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD--------GQY------ 149 (511) Q Consensus 84 ~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~--------~~~------ 149 (511) ++++||++|+|+||++|+|++.||++|.+|+++|+||+++++++||+.|++|++|++|.+.|. |.. T Consensus 83 ~~~lgis~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G~cP~c~~~~~~Gd~ce~cg~ 162 (558) T PRK12268 83 FEKLGISYDNYTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEKARGDQCDNCGA 162 (558) T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCC T ss_conf 99819837768668988999999999999998899330135343684112313123315406776874356732532476 Q ss_pred -----------CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf -----------222332000034544344666444443444333321000676545775410345675323433377765 Q gi|255764461|r 150 -----------YNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGI 218 (511) Q Consensus 150 -----------~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGi 218 (511) |..||+|+++++++||||+|++++++|++|+++++. +|..+++.+.+||++||+|||||||+ +||| T Consensus 163 ~~~~~dli~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~--~p~~~~~~~~~~l~~~l~D~~ISR~~-~WGi 239 (558) T PRK12268 163 LLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIESGTD--WPPNVLNFTLNWLKEGLKPRAITRDL-PWGI 239 (558) T ss_pred CCCHHHHCCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCC-CCCE T ss_conf 47857724885677899444773453021418778999999853887--78899999999986337565455538-7865 Q ss_pred CCC--CCCCCCCCCCHHHHHHHHCCCCCCCCC---CCCCCCCCCCC----HHCCCCCCCCHHCCHHHHHHHHHH--HHCC Q ss_conf 786--422214646024443220012346765---43100024110----000456432100010247765433--1012 Q gi|255764461|r 219 KIP--DDPQYIMYVWIDALTNYLTTTGYLDNP---DGSKAKFWPAD----LHVIGKDILRFHAIYWPAFLLSAN--LPLP 287 (511) Q Consensus 219 piP--~~~~~~~YVWfDa~~gY~s~~~~~~~~---~~~~~~~w~~d----~~~~G~Dii~Fh~i~~pa~l~~~~--~~~p 287 (511) ||| +.++|++||||||++||+++++.+... ...+..||+.+ +||+||||++||+++|||||++.+ +++| T Consensus 240 piP~~~~~~~~iyVW~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~GkDii~FH~v~wpa~l~a~~~~~~lP 319 (558) T PRK12268 240 PIPFEGAEGKVFYVWFDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFIGKDNIPFHSVIWPAMLLGSGEPYKLP 319 (558) T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 78855568967988657872203433654541698567987278998427764366654347879999997337987788 Q ss_pred CCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHH Q ss_conf 32333430330586010000022111000000221112111000024787301112221110013321102210213455 Q gi|255764461|r 288 KKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS 367 (511) Q Consensus 288 ~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~ 367 (511) +++++|||++++|+|||||+||+|+|.|++++||+|++||||++.+++++|++||+++|++++|++|+|++|||++|+++ T Consensus 320 ~~i~~~g~~~~~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~ 399 (558) T PRK12268 320 TAIVSSEYLTYEGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLS 399 (558) T ss_pred CEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77877556874684114557887798999987490777899885488888888799999999999999999999999999 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH Q ss_conf 65312332103455589556566789999999999877503589999999999999978865418701216999999999 Q gi|255764461|r 368 MILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTV 447 (511) Q Consensus 368 f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~v 447 (511) |+.++|+|.+|+.+.+++.|+++++++.+++++++++||+++|++|+++|+++++.+|+|++..+||++.|+++++++++ T Consensus 400 ~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~~~~N~y~~~~~PW~l~k~d~~~~~~v 479 (558) T PRK12268 400 FIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELARLANKYLNEKAPWKLAKTDPERAAAV 479 (558) T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHH T ss_conf 99986589789876798565999999999999999999751799999999999999999998379854316899999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999999999998543224899999998498800-0795551012689973368777643234 Q gi|255764461|r 448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE-NRCFQSLDQRLKPGFMLHKTFDPIFPRF 510 (511) Q Consensus 448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~-~~~~~~~~~~l~~~~~i~~~~epLF~Ri 510 (511) ++++++++|.+++||+||||++|++||++||++.. ..+|+.....+++|+.+.+ ++|||||| T Consensus 480 l~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~~~~~~~~w~~~~~~l~~g~~i~~-~~pLF~Ri 542 (558) T PRK12268 480 LYTALNLVKLLAILLYPFLPFSAEKIWEMLGLPNIEKLSWEEAADPLEPGHSLNK-PEPLFRKI 542 (558) T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC-CCCCCCCC T ss_conf 9999999999999986740399999999849997755551443156899599789-87685888 No 7 >KOG0436 consensus Probab=100.00 E-value=0 Score=844.71 Aligned_cols=506 Identities=40% Similarity=0.718 Sum_probs=456.2 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 88179978889999883222478978999999998858980362364370227999999983999899999999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM 83 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 83 (511) -+++++|||+.|+|.++||||+++.+++|+++||+|++|..|+|.||||+||++|+.+|+.+|.+|.|+||+..+.|.++ T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL 117 (578) T KOG0436 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQL 117 (578) T ss_pred CCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 85059845513147885145799999999999998635880686037775442243368655999078886651999999 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCC---CCCCCCCCEECC Q ss_conf 99808898867477888899999999888754310221100010113343015566721112222---222233200003 Q gi|255764461|r 84 ADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQ---YYNAQHNPVQWM 160 (511) Q Consensus 84 ~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~---~~~~~~~p~~~~ 160 (511) ++.+||+|+.|+||++|.|++.||++|..+..+|+||.++++||||+.||+|++++.|.+..+|. ..-.+|+||.++ T Consensus 118 ~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~ 197 (578) T KOG0436 118 WKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWR 197 (578) T ss_pred HHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHHHCCCCCCCCEEEECCCCCEEEE T ss_conf 99829633421224891089999999999986783652023516860530028788871388999854540468942676 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 454434466644444344433332100067654577541034567532343--337776578642221464602444322 Q gi|255764461|r 161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSR--KTFDWGIKIPDDPQYIMYVWIDALTNY 238 (511) Q Consensus 161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR--~~~~WGipiP~~~~~~~YVWfDa~~gY 238 (511) +|++|||+||+|+..|.+|+..+|.++.|+..++++++|++.||+|.+||| +|++||||+|+++.|++||||||+++| T Consensus 198 kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578) T KOG0436 198 KEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578) T ss_pred CCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHH T ss_conf 15650100875512899998449974676077889999997379865325703301348888999862698759988657 Q ss_pred HCCCCCCC---CCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCC Q ss_conf 00123467---654310002411000045643210001024776543310123233343033058601000002211100 Q gi|255764461|r 239 LTTTGYLD---NPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIE 315 (511) Q Consensus 239 ~s~~~~~~---~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e 315 (511) ||+.++.. +.++...-+||+.+|+|||||++||+|||||+|||+|+++|+.|++|||++.+|.|||||+||+|+|.+ T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~ 357 (578) T KOG0436 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFE 357 (578) T ss_pred HHHHCCCCHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEECCHHHCCCCCHHH T ss_conf 88606882102400015237875123201445664554518999866999861798841265422210212046468899 Q ss_pred HHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHH--HHHHCC-CCCCCCCCCCCHHHHHHHH Q ss_conf 0000221112111000024787301112221110013321102210213455--653123-3210345558955656678 Q gi|255764461|r 316 VIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS--MILKDY-DGMIPTPGAFTESDESILS 392 (511) Q Consensus 316 ~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~--f~~k~~-~g~ip~~~~~~~~D~~ll~ 392 (511) ++++||+|++||||+..+..+.|.||+++++....|++|++++||++||+.. +.-++. .+.+-..-.....+..+.. T Consensus 358 l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~ 437 (578) T KOG0436 358 LVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVD 437 (578) T ss_pred HHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHCCCHHHH T ss_conf 99883844156675553520788881299999999999999998998887521357001563002477425531452899 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC---HHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 999999999987750358999999999999997886541870121699---99999999999999999999854322489 Q gi|255764461|r 393 VCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTN---PDRASTVLYVTVEVIRQLAILLQAFVPKL 469 (511) Q Consensus 393 ~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d---~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ 469 (511) .++++++.+...++++++.+|++.+.++++.+|.|++..+||++-++. .+.+..+++..++++|.++++|+|+||.+ T Consensus 438 ~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psl 517 (578) T KOG0436 438 TVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSL 517 (578) T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99975899985403330999999999999753156650687021114673689999999999999999999872356536 Q ss_pred HHHHHHHCCCCCCCCCHHHHCCCC----------CCCCCCCCCCCCCCCC Q ss_conf 999999849880007955510126----------8997336877764323 Q gi|255764461|r 470 ANKIFDILFVADENRCFQSLDQRL----------KPGFMLHKTFDPIFPR 509 (511) Q Consensus 470 ae~i~~~Lg~~~~~~~~~~~~~~l----------~~~~~i~~~~epLF~R 509 (511) |.+++++||++.+.++..++.... ..|..+.++-.++++| T Consensus 518 s~~llsqlgvsk~qrsl~~~~~vf~~~~ygk~s~~kgr~v~~kt~~~~~~ 567 (578) T KOG0436 518 SLRLLSQLGVSKDQRSLITWSPVFAPIEYGKESDEKGRKVGKKTGKAKVK 567 (578) T ss_pred HHHHHHHCCCCHHHCCCCCCHHCCCCHHCCCCCCCCCCCCCCCCCCCEEE T ss_conf 79999870987433021010002672220677875566578434664344 No 8 >TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=100.00 E-value=0 Score=766.76 Aligned_cols=479 Identities=27% Similarity=0.414 Sum_probs=410.9 Q ss_pred CE--EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----C---CCC------- Q ss_conf 81--7997888999988322247897899999999885898036236437022799999998----3---999------- Q gi|255764461|r 5 EK--LYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----A---GVT------- 68 (511) Q Consensus 5 ~~--~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~---g~~------- 68 (511) ++ |.|.+||||++|.||||||.+.+..|+++||+||+||+|+|++|+|+||.+++++.++ + |++ T Consensus 35 ~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vLw~~G~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe 114 (970) T TIGR00422 35 EPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLKAEEIKGKTKHDLGRE 114 (970) T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 77751571782585555116689999999999985421787125788866576324689999987622578877878868 Q ss_pred -----HHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHH Q ss_conf -----8999999999999999980889886747---78888999999998887543102211000101133430155667 Q gi|255764461|r 69 -----TKVFVDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDE 140 (511) Q Consensus 69 -----p~e~~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~ 140 (511) +-|+.+++...|++++++||+|+| |.| |.+|+..+.|+..|.+||++|+||++.+.+.|||+|++.+++.| T Consensus 115 ~F~~~~~ewk~e~~~~I~~Q~~rLG~S~D-WsrE~FTmd~~l~~~V~~~Fv~LY~~GLIYRg~~lVNWdpk~~TAiSd~E 193 (970) T TIGR00422 115 EFVEKIWEWKEESGGTIKNQIKRLGVSLD-WSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIE 193 (970) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHH T ss_conf 99999999998877999999998088502-35004544888888999999988554861543611372054463102333 Q ss_pred H---CCCC------------------------------------------------------------------------ Q ss_conf 2---1112------------------------------------------------------------------------ Q gi|255764461|r 141 V---YKGA------------------------------------------------------------------------ 145 (511) Q Consensus 141 v---~~~~------------------------------------------------------------------------ 145 (511) | ++.. T Consensus 194 Venkeyker~~~~L~y~~Ypla~~~~~~~Gkd~l~vATTRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~ipii 273 (970) T TIGR00422 194 VENKEYKERVKGKLYYIRYPLANGSKTADGKDYLVVATTRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKIPII 273 (970) T ss_pred HHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEEEEE T ss_conf 32111312226654515654348875423552079972672256428288767897045785549889724567684376 Q ss_pred -------------------------------------------------C--------------CC-------------- Q ss_conf -------------------------------------------------2--------------22-------------- Q gi|255764461|r 146 -------------------------------------------------D--------------GQ-------------- 148 (511) Q Consensus 146 -------------------------------------------------~--------------~~-------------- 148 (511) . ++ T Consensus 274 aDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH~LLe~i~~l~~dG~Lne~a~~~~tG~~~~Y~iP~~y~GL~~~eAR~kiv 353 (970) T TIGR00422 274 ADEYVDMEFGTGAVKVTPAHDFNDYEVGKRHNLLEFINILDEDGLLNENAEVIDTGKEDVYAIPGEYQGLERFEARKKIV 353 (970) T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHCCEECCCCHHHHCCCCCCCCCEECEEECCCCCCCCCCHHCCCCCHHHHHHHHH T ss_conf 17754624175127760874977600134121141433317997501100110077723310652205888899999999 Q ss_pred --------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCC-C Q ss_conf --------------------222233200003454434466644444344433-332100067654577541034567-5 Q gi|255764461|r 149 --------------------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYE-SHPEFILPIERRNEVISFVKSGLK-D 206 (511) Q Consensus 149 --------------------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~-~~~~~~~p~~~~~~~~~wl~~gl~-D 206 (511) +|+.||.|||..-++|||+++.++++.+.+.++ .+..-+.|+++.+.+.+||.+ |+ | T Consensus 354 ~~L~~~glL~k~~p~~~~VG~c~Rsg~vvEP~ls~QWFV~~~~La~~a~~~~~~~g~~~fvP~~~~~~y~~W~~~-~~WD 432 (970) T TIGR00422 354 EDLKEEGLLVKIEPHTHNVGHCERSGTVVEPLLSKQWFVKVEKLADKALEAAEEDGEIKFVPKRFEKRYLNWLRN-IRWD 432 (970) T ss_pred HHHHHCCCCCCCCEECCCCCEECCCCCEEECCCCCCCEECHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCC T ss_conf 999866880011100034562147893430426998621717778999999854588336021678899999963-8888 Q ss_pred CCCCCCCCCCCCCCCCC--------------------------------C----------------CCCCCCCHHHHHHH Q ss_conf 32343337776578642--------------------------------2----------------21464602444322 Q gi|255764461|r 207 LSLSRKTFDWGIKIPDD--------------------------------P----------------QYIMYVWIDALTNY 238 (511) Q Consensus 207 w~ISR~~~~WGipiP~~--------------------------------~----------------~~~~YVWfDa~~gY 238 (511) ||||||+ +||+|||.. + .-|+++||++.+.+ T Consensus 433 WCISRQL-~WGH~IPvWY~~~E~~~~~~~~G~~~V~~~~~~~~~~~~~gp~~~c~~CG~~f~l~qd~DVLDTWFSS~LWP 511 (970) T TIGR00422 433 WCISRQL-IWGHRIPVWYVEIEGEEDHKETGEVYVAKEEALPDSKTNTGPKEVCDKCGSVFELEQDEDVLDTWFSSSLWP 511 (970) T ss_pred CEEECCC-CCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH T ss_conf 1330102-026457667751357776764114774787764101101676876634587423434877545323234458 Q ss_pred HCCCCCC----CCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HHHH----HH------HHCCCCCCCCCCEEE-CCCC Q ss_conf 0012346----76543100024110000456432100010247-7654----33------101232333430330-5860 Q gi|255764461|r 239 LTTTGYL----DNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FLLS----AN------LPLPKKVFSHGFILH-KGEK 302 (511) Q Consensus 239 ~s~~~~~----~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l~~----~~------~~~p~~i~~~g~l~~-~G~K 302 (511) +|++||+ .+...+++.|+|+++.+.|+||||| |.| |+|. +| ..|++.|++||+|-. +|+| T Consensus 512 fs~lGWpqekG~~~~~D~~~fyPt~~L~TG~DIiFF----WV~RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRDeqG~K 587 (970) T TIGR00422 512 FSTLGWPQEKGDETEKDLKKFYPTDLLVTGYDIIFF----WVARMILRSLALTGDENGKPQVPFKDVYIHGLVRDEQGRK 587 (970) T ss_pred HHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCCC T ss_conf 874688644567766889733887656530368899----9999986215540135869887820258654455588851 Q ss_pred CCHHHCCCCCCCCHHH-------------------------------------HCCCCCCCHHHEEECC-CCCCCEECCC Q ss_conf 1000002211100000-------------------------------------0221112111000024-7873011122 Q gi|255764461|r 303 ISKSLGNVIDPIEVIE-------------------------------------EVGVDALRYFLVREIA-CGKDGFYDKD 344 (511) Q Consensus 303 MSKS~GN~I~~~e~l~-------------------------------------~~g~D~lR~~l~~~~~-~~~D~~Fs~~ 344 (511) |||||||||+|.|+|+ +||+|+|||+|++... .|+|++|+++ T Consensus 588 MSKSlGNvIdP~d~I~GI~L~dL~~K~~~~~l~P~~~eK~~~~~~~~fpnGI~~YGaDALR~~La~~~~G~G~Di~f~~~ 667 (970) T TIGR00422 588 MSKSLGNVIDPLDVIEGISLDDLLEKRTGNMLQPQLAEKIKKGTKKSFPNGIPKYGADALRFTLASLVTGPGDDINFDWK 667 (970) T ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 22205683476986068870789999745777835899987643210323200206038999998358678986421189 Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHCC---CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 21110013321102210213455653123---32103-455589556566789999999999877503589999999999 Q gi|255764461|r 345 GLKKRVNADLANGIGNLVSRSVSMILKDY---DGMIP-TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420 (511) Q Consensus 345 ~~~~~~n~~L~~~lgN~~~R~~~f~~k~~---~g~ip-~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l 420 (511) ++....| ++||+|| ++|.+.|-.... ...++ .....+..|+|++++|+++++++++++|+|+|..|.+.|++| T Consensus 668 ~v~~~~n--F~NKlWN-A~rF~l~~~~~~~~~~~~~~~~~~~~~l~drWILs~L~~~i~~v~~~ld~Y~F~~a~~~ly~F 744 (970) T TIGR00422 668 RVESARN--FANKLWN-ASRFVLMNLSDDTQDELELSGGEEKLSLADRWILSKLNRTIKEVREALDKYRFNEAAKALYEF 744 (970) T ss_pred HHHHHHH--HHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 8876767--7678899-999999600356676113577632013546999999999999999988403677887576521 Q ss_pred H--HHHHHHHHHHCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCCCCHHHHCCCCC Q ss_conf 9--9997886541870121699-9999999999999999999985432248999999984988-00079555101268 Q gi|255764461|r 421 V--SEVDRYFDAQKPWELKKTN-PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA-DENRCFQSLDQRLK 494 (511) Q Consensus 421 ~--~~~N~yi~~~~PW~l~k~d-~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~-~~~~~~~~~~~~l~ 494 (511) + ++||+||+..|+ .+..++ .++...+..++..+|..+.+||||||||+||+||+.|... .+++...+++.... T Consensus 745 ~W~dFCD~YIE~~K~-~~~~~~~~~~k~~A~~~L~~vLd~~l~LLhPf~PF~tE~iwq~~~~~~~~si~~~~yP~~~~ 821 (970) T TIGR00422 745 IWNDFCDWYIELVKY-RLYNGNDEAEKKAARDTLAYVLDKALRLLHPFMPFITEEIWQHLKEGEADSIMLQSYPEVDA 821 (970) T ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHH T ss_conf 013451235442143-14789738999999999999999999985245522578999884361010422135765233 No 9 >pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases. Probab=100.00 E-value=0 Score=759.30 Aligned_cols=358 Identities=49% Similarity=0.881 Sum_probs=337.5 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 79978889999883222478978999999998858980362364370227999999983999899999999999999998 Q gi|255764461|r 7 LYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADV 86 (511) Q Consensus 7 ~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 86 (511) |+||+|||||||+||||||++|+.+|+++||+||+||+|+|++|+|+||+||+.+|+++|++|+|+|++|+++++++|++ T Consensus 1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~g~~~~e~~~~y~~~~~~~~~~ 80 (388) T pfam09334 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGVTPQELVDRYHEEFKELFKK 80 (388) T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 98937898888860022418899999999999956997071386485379999999984999999999999999999998 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC-----------CCC------- Q ss_conf 08898867477888899999999888754310221100010113343015566721112-----------222------- Q gi|255764461|r 87 LDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA-----------DGQ------- 148 (511) Q Consensus 87 ~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~-----------~~~------- 148 (511) +||++|.|+||++++|.+.++++|++|+++|+||+++.+++|||.|++|++|+++.+.+ .|+ T Consensus 81 lgi~~D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~~~~~~~~~~e~~G~~~e 160 (388) T pfam09334 81 FNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLE 160 (388) T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCC T ss_conf 39967878657984689999999875140681553241122366666666533307545755750136641002388278 Q ss_pred -------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -------2222332000034544344666444443444333321000676545775410345675323433377765786 Q gi|255764461|r 149 -------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIP 221 (511) Q Consensus 149 -------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP 221 (511) .|..|+.|++.+.++||||++++++++|++|+++++.. +|...++.+.+|++++|+|||||||+ +||+|+| T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl~~~l~Dw~ISR~~-~WG~~iP 238 (388) T pfam09334 161 PTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDE-PPSNVNEVVLSWLKEGLKDLSITRDL-DWGIPVP 238 (388) T ss_pred HHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCC T ss_conf 677417644467997544324412330688999999999549988-98899999999986688876441247-7875048 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----HHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 42221464602444322001234676543100024110-----0004564321000102477654331012323334303 Q gi|255764461|r 222 DDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFI 296 (511) Q Consensus 222 ~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d-----~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l 296 (511) +++++++||||||+++|+++++++......+..+|+.+ +||+|+||++||+++|||++++.++++|+++++|||| T Consensus 239 ~~~~~~~~vW~da~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~G~Di~~fh~~~~~a~~~~~~~~~~~~~~~~g~v 318 (388) T pfam09334 239 GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWPAMLMAAGLPLPTQVFAHGWL 318 (388) T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE T ss_conf 88980687723565552000277777817888644367762000106764142017899999983899988667875799 Q ss_pred EECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHH Q ss_conf 3058601000002211100000022111211100002478730111222111001332110221021345 Q gi|255764461|r 297 LHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSV 366 (511) Q Consensus 297 ~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~ 366 (511) +++|+||||||||+|+|.|++++||+|++||||++.+++++|++||+++|++++|++|+|||||++||++ T Consensus 319 ~~~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d~~Fs~~~~~~~~n~~~~~kl~N~~~r~~ 388 (388) T pfam09334 319 TVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388 (388) T ss_pred EECCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7599444786998788899998878289999999539998999899999999987998887765773309 No 10 >KOG1247 consensus Probab=100.00 E-value=0 Score=764.16 Aligned_cols=501 Identities=23% Similarity=0.414 Sum_probs=456.8 Q ss_pred CCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 88817997888999988322247-89789999999988589803623643702279999999839998999999999999 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHA-YEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~-~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) ++++++||+++||+|..+|+|++ ++.+.|||+|||.+.+|++.+|+||+|++|++++.+|.++|++|+|+|++|+..++ T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk 91 (567) T KOG1247 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHK 91 (567) T ss_pred CCCCEEEECCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCHHHH T ss_conf 75663351253202166533664667764423012366778744785156654046679998756987898872212678 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC--------CCCCCCC Q ss_conf 99998088988674778888999999998887543102211000101133430155667211122--------2222223 Q gi|255764461|r 82 DMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD--------GQYYNAQ 153 (511) Q Consensus 82 ~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~--------~~~~~~~ 153 (511) +.++.++|++|.|.||+++.+.+++|.||.+|+++|+..+.+..|.||+.|++|++|++|.+.+. |+.|+.| T Consensus 92 ~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~c 171 (567) T KOG1247 92 VVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKC 171 (567) T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHCCCCCCCCCCCCCHHHHHH T ss_conf 88875156621037606711327789886252115771100011577521124034044303378887765320566666 Q ss_pred CC---CEE--------------CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 32---000--------------03454434466644444344433332-1000676545775410345675323433377 Q gi|255764461|r 154 HN---PVQ--------------WMEEEGYFFRLSAYQDKLLSYYESHP-EFILPIERRNEVISFVKSGLKDLSLSRKTFD 215 (511) Q Consensus 154 ~~---p~~--------------~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~ 215 (511) |+ +++ .+.++|.|+.|+++++++.+|++... ...+..+.++...+||+.||+.+||+|+ +. T Consensus 172 G~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRD-Lk 250 (567) T KOG1247 172 GKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRD-LK 250 (567) T ss_pred HHHCCHHHHCCCCHHEECCCCEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-CC T ss_conf 54237877238520100267735541279987577678999999730545777611678999999746665200022-55 Q ss_pred CCCCCCCC--CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----HHCCCCCCCCHHCCHHHHHHHHHHHHC-- Q ss_conf 76578642--221464602444322001234676543100024110-----000456432100010247765433101-- Q gi|255764461|r 216 WGIKIPDD--PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWPAFLLSANLPL-- 286 (511) Q Consensus 216 WGipiP~~--~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d-----~~~~G~Dii~Fh~i~~pa~l~~~~~~~-- 286 (511) ||+|||.+ ++|||||||||+|||+|.++.+. .+|++||... ++|+||||++|||++||+++++++.++ T Consensus 251 WGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt---~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~ 327 (567) T KOG1247 251 WGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYT---DEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTV 327 (567) T ss_pred CCCCCCHHHHCCCEEEEEECCCCEEEEEEHHHH---HHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCHH T ss_conf 688767455166279999737513788506666---78999846974403988746677761466412454167777332 Q ss_pred CCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHH Q ss_conf 232333430330586010000022111000000-2211121110000247873011122211100133211022102134 Q gi|255764461|r 287 PKKVFSHGFILHKGEKISKSLGNVIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRS 365 (511) Q Consensus 287 p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~ 365 (511) -+++.++++|..|..|||||||..|...++-+. .+++++||||++.+|+++|+.|||++|+.++|+||.+++|||++|+ T Consensus 328 v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~ 407 (567) T KOG1247 328 VHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRV 407 (567) T ss_pred HEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 10001544200246740145652220554335799888889887522676667767589999873599998888899999 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHH Q ss_conf 55653123321034555895565667899999999998775035899999999999999788654187012169999999 Q gi|255764461|r 366 VSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRAS 445 (511) Q Consensus 366 ~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~ 445 (511) ++|+.+.|+|.+|+- +++..|+.+++.+++...++.++||....++|++.+|++++.+|+|+++++.|++...+++++. T Consensus 408 l~fv~~~~~g~Vp~~-~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~ 486 (567) T KOG1247 408 LKFVAAKYNGVVPEM-ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEESRQRAG 486 (567) T ss_pred HHHHHHHHCCCCCCE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC T ss_conf 999987608716630-3068758899999999999999988778999999999999752088741420001032200055 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999999999999985432248999999984988000795551012689973368777643234 Q gi|255764461|r 446 TVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHKTFDPIFPRF 510 (511) Q Consensus 446 ~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~~l~~~~~i~~~~epLF~Ri 510 (511) +++.++++++..++.||+|+||.++.+|.++||++. ..-.+.+.-.+.+||.++. ++|||+|| T Consensus 487 ~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~-~~~~~~~~~~l~~gH~ig~-~~pLFq~l 549 (567) T KOG1247 487 TVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPE-TLFPDRFICRLLAGHRIGT-PSPLFQKL 549 (567) T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CCCCCCCCEEECCCCCCCC-CCHHHHHC T ss_conf 264336689999999863656620699999849850-0179961125227671688-51878755 No 11 >PRK05729 valS valyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=716.18 Aligned_cols=479 Identities=24% Similarity=0.381 Sum_probs=392.6 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----CCCCHHH------ Q ss_conf 888817997888999988322247897899999999885898036236437022799999998----3999899------ Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----AGVTTKV------ 71 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~g~~p~e------ 71 (511) +++++|.+..||||+||.||||||++++..|+++||+||+|++|+|++|||+||+|++.++++ .|++..+ T Consensus 32 ~~~~~f~~~~pPP~~~G~lHiGHa~~~~i~D~i~Ry~rm~G~~V~~~pG~D~~Gl~~e~~vek~l~~~g~~~~~~~re~f 111 (877) T PRK05729 32 KSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKTRHDLGREKF 111 (877) T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHH T ss_conf 89997799728898879861216674889999999987279966888986888605689999999874998354489999 Q ss_pred ------HHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC Q ss_conf ------9999999999999980889886--74778888999999998887543102211000101133430155667211 Q gi|255764461|r 72 ------FVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK 143 (511) Q Consensus 72 ------~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~ 143 (511) +++++.+.+.++|++||+++|+ -..|+++.+.+.|+++|.+|+++|+||++..+++|||.|++.+++.+|.. T Consensus 112 ~~~~~~w~~~~~~~i~~q~~rlG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~kGliyr~~~~V~wcp~~~Tals~~EV~~ 191 (877) T PRK05729 112 LEKVWEWKEESGGTITNQLRRLGASVDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEY 191 (877) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHC T ss_conf 99999999999999999999828603358984558988999999999999988997841312366887788435678732 Q ss_pred CC------------------------------------------------------------------------------ Q ss_conf 12------------------------------------------------------------------------------ Q gi|255764461|r 144 GA------------------------------------------------------------------------------ 145 (511) Q Consensus 144 ~~------------------------------------------------------------------------------ 145 (511) .. T Consensus 192 ~~~~~~~~~ikf~l~~~~~~l~i~TTrPeTl~~~~avav~P~dery~~l~Gk~~~~P~~~~~ipii~d~~V~~~~GTG~V 271 (877) T PRK05729 192 KEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKKVILPLVGREIPIIADEYVDPEFGTGAV 271 (877) T ss_pred CCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCE T ss_conf 45667338984132478874765016852344645788468874889855988980588975328715752677784617 Q ss_pred ---------------------------CC-----------------------------------------CCCCCCCCCE Q ss_conf ---------------------------22-----------------------------------------2222233200 Q gi|255764461|r 146 ---------------------------DG-----------------------------------------QYYNAQHNPV 157 (511) Q Consensus 146 ---------------------------~~-----------------------------------------~~~~~~~~p~ 157 (511) +| -+|+.|+.|+ T Consensus 272 ~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~G~~~~~ar~~Ii~~L~~~g~l~~~~~~~h~~p~~~R~~~pi 351 (877) T PRK05729 272 KITPAHDFNDFEVGKRHNLPMINIMDEDGTINENAGEYQGLDRFEARKAIVADLEELGLLVKIEPHKHSVGHSDRSGVVI 351 (877) T ss_pred EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEE T ss_conf 97168997899988764887434656676404574102997088988999999997799774321356787546778569 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-------------- Q ss_conf 003454434466644444344433332100067654577541034567532343337776578642-------------- Q gi|255764461|r 158 QWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD-------------- 223 (511) Q Consensus 158 ~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~-------------- 223 (511) +.+.++|||+++.++++++++.++++...+.|+..++.+.+||++ ++|||||||| +||+|||-. T Consensus 352 ~~~~~~QWFi~~~~l~~~~l~~~~~~~i~~~P~~~~~~~~~wl~n-~~DWcISRqr-~WG~piPvw~~~~~~~~v~~~~~ 429 (877) T PRK05729 352 EPYLSDQWFVKMKPLAKPALEAVEDGKIKFVPKRWENTYFHWMEN-IQDWCISRQL-WWGHRIPAWYDEDGEVYVGRTEP 429 (877) T ss_pred EEECCCCCEECCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHC-CCCCCCCCCC-CCCCCEEEEECCCCCEEECCCHH T ss_conf 974130100003357999999860588312577888499998605-6555113554-46884258991898489416756 Q ss_pred -------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HHH-H---HHHH Q ss_conf -------------221464602444322001234676543100024110000456432100010247-765-4---3310 Q gi|255764461|r 224 -------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FLL-S---ANLP 285 (511) Q Consensus 224 -------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l~-~---~~~~ 285 (511) +..|++||||+.+.++|+.+|+. ....+.+|+|.|+.+.|+||++| |.| |++ + .|.. T Consensus 430 ~~~~~~~~~~~~~d~DVlDtWFsSgl~p~s~lg~p~-~~~~~~~~~P~d~~~~G~Dii~f----Wv~rm~~~~~~~~~~~ 504 (877) T PRK05729 430 EARAKAGSENLTQDEDVLDTWFSSALWPFSTLGWPD-KTPDLKRFYPTSVLVTGFDIIFF----WVARMIMMGLHFTGQV 504 (877) T ss_pred HHHHHCCCCCCEECCCCCCCHHHCCCCCCCCCCCCC-CHHHHCCCCCCCCCCCCCCHHEE----EEEEEECCEEEECCCC T ss_conf 644323876525565322334431666644166865-20544247887545206552113----4444431032011237 Q ss_pred CCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHH Q ss_conf 1232333430330-586010000022111000000221112111000024787301112221110013321102210213 Q gi|255764461|r 286 LPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSR 364 (511) Q Consensus 286 ~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R 364 (511) ++++|++|||+.. +|+|||||+||+|+|.+++++||||++|||+++.++.++|++|+++.+.... .+++++|| +.| T Consensus 505 Pfk~v~~hG~v~D~~G~KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~di~~~~~~v~~~r--~f~nKlwN-~~r 581 (877) T PRK05729 505 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYR--NFANKLWN-ASR 581 (877) T ss_pred CCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--HHHHHHHH-HHH T ss_conf 611020044378898877878788989989999871919999999970776766000689999999--99999999-999 Q ss_pred HHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCCCH Q ss_conf 455653123-321034555895565667899999999998775035899999999999--99978865418701216999 Q gi|255764461|r 365 SVSMILKDY-DGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKTNP 441 (511) Q Consensus 365 ~~~f~~k~~-~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~d~ 441 (511) .+.+-.... ....+....++..|+|+++++++++++++++|++|+|+.|++.+++|+ ++|+.|++..++ .+..++. T Consensus 582 f~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F~w~d~cdwYlE~~K~-rl~~~~~ 660 (877) T PRK05729 582 FVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEFIWNEFCDWYLELAKP-VLNGGDE 660 (877) T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCH T ss_conf 999724656644456621067879999999999999998750002099999999998467557899999799-7708877 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCC Q ss_conf 99999999999999999998543224899999998498800079555101 Q gi|255764461|r 442 DRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQ 491 (511) Q Consensus 442 ~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~ 491 (511) .....+..++..++..+.+||||||||+||+||+.|+-..++....++++ T Consensus 661 ~~~~~~~~~L~~vL~~~L~lLhPfmPFitEElwq~L~~~~~si~~~~wP~ 710 (877) T PRK05729 661 AAKRGTRATLAYVLEEILRLLHPFMPFITEELWQKLAPEGESIMLAPWPE 710 (877) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 88999999999999999998560135759999985778897468637999 No 12 >PRK13208 valS valyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=702.76 Aligned_cols=472 Identities=25% Similarity=0.406 Sum_probs=382.5 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCH------------ Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-9998------------ Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTT------------ 69 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p------------ 69 (511) ++++|+|+.|+|||||+||||||++++.+|+++||+||+|++|+|+.|+|+||+||+.+++|+ |+++ T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~~t~~D~~~Ry~rm~G~~Vl~~~G~D~~GlPie~~vek~~~~~~~~~~~~~f~~~c 115 (809) T PRK13208 36 KKPVYIIDTPPPTVSGKLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRAHDISREEFIELC 115 (809) T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHH T ss_conf 99969990699998897213166889999999999981799669988458566899999999719990127999999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC-- Q ss_conf 99999999999999998088988--67477888899999999888754310221100010113343015566721112-- Q gi|255764461|r 70 KVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA-- 145 (511) Q Consensus 70 ~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~-- 145 (511) +++++++.+.++++++++|+++| ...+|++|.|.++++++|.+|+++|+||++..+++|||.|++.+++.+|..+. T Consensus 116 ~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~y~~~v~~~f~~L~~~Gliy~g~~~v~wcp~~~T~ls~~Ev~~~~~~ 195 (809) T PRK13208 116 RELTDEDEEKFRELWRRLGLSVDWSLEYRTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCRTAIAQAEVEYKERE 195 (809) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 99999999999999998286140689707588789999999999999779978742103677665755565676425677 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 196 ~~~~~ikf~~~~~~~~l~iaTTrPeTl~~~~av~v~P~d~ry~~l~G~~~~~P~~~~~vpi~~~~~V~~~~GTG~V~~~p 275 (809) T PRK13208 196 GKLNYIKFPVKEGGEKITIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT 275 (809) T ss_pred CEEEEEEEEECCCCCEEEEEECCHHHHHHHHCEEECCCCHHHHHHCCCEEECCCCCCEEEEEEEEEEECCCCCCCEEECC T ss_conf 60399988851798648999578237653020410688578898459889716889666786346650467878356678 Q ss_pred -----------------------CC-----------------------------------------CCCCCCCCCEECCC Q ss_conf -----------------------22-----------------------------------------22222332000034 Q gi|255764461|r 146 -----------------------DG-----------------------------------------QYYNAQHNPVQWME 161 (511) Q Consensus 146 -----------------------~~-----------------------------------------~~~~~~~~p~~~~~ 161 (511) +| -+|..|++|++.+. T Consensus 276 ~~d~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~ea~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~pi~~~~ 355 (809) T PRK13208 276 FGDQTDVTWWRELNLPLRIIIDEDGRITEAAGKYAGLTIKEARKKIIEDLKEEGLLVKQEPITHNVKVCERCKTPIEILV 355 (809) T ss_pred CCCCHHHEEHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEE T ss_conf 98730330244305563000377872424663459968999899999999968994134455455641147897216875 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCC----------------- Q ss_conf 54434466644444344433332100067654577541034567-532343337776578642----------------- Q gi|255764461|r 162 EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLK-DLSLSRKTFDWGIKIPDD----------------- 223 (511) Q Consensus 162 ~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~-Dw~ISR~~~~WGipiP~~----------------- 223 (511) ++|||++++++++++++.+++ .. +.|...++.+.+||++ ++ |||||||| +||+|||-. T Consensus 356 ~~QWfi~~~~~k~~~~~~~~~-i~-~~P~~~~~r~~~wl~~-~~~DW~iSRqr-~WGtpiPiw~~~~~~~~~~~~~~~~~ 431 (809) T PRK13208 356 TRQWFIKVLDLKEELLERAKE-IE-WYPEHMRKRLENWIEG-LNWDWCISRQR-YFGTPIPVWYCKDCGGEGKPILADEE 431 (809) T ss_pred CHHHHHHHHHHHHHHHHHHHC-CE-ECCCHHHHHHHHHHHC-CCCCCCEEECC-CCCCCCCEEEECCCCCCCCCCCCCHH T ss_conf 245665327778888876422-60-0584088899999842-56542000012-35864424760577875640148788 Q ss_pred ---------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHH---CC Q ss_conf ---------------------------221464602444322001234676543100024110000456432100---01 Q gi|255764461|r 224 ---------------------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFH---AI 273 (511) Q Consensus 224 ---------------------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh---~i 273 (511) +..|++||||+.+.++++.+|.. +...+..++|.|+++.|+||++|| ++ T Consensus 432 ~l~~d~~~~~~~~~~~~~~~~~~~~~~e~dvlD~WfdS~~~p~~~~~~~~-~~~~f~~~~P~d~~~~G~Di~r~W~~~~l 510 (809) T PRK13208 432 DLPVDPTKDPPPGYSECCRCGPGEFEPETDVMDTWADSSITPLIVTGWLE-DKELFEKLFPADLRPQGHDIIRTWLFYTI 510 (809) T ss_pred HCCCCCHHCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCHHHHCCCCC-CHHHHHHCCCCCEEECHHHHHHHHHHHHH T ss_conf 73778110174111024666876633047666646556778887605632-15667544885244340598873999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHH Q ss_conf 024776543310123233343033-0586010000022111000000221112111000024787301112221110013 Q gi|255764461|r 274 YWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNA 352 (511) Q Consensus 274 ~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~ 352 (511) +. ++.+ .|..++++|++|||++ .+|+|||||+||+|+|.+++++||||++|||+++ +++++|.+|+++.+.. .. T Consensus 511 ~~-~~~l-~~~~Pfk~v~~~G~vld~~G~KMSKS~GNvi~p~eii~~yGADalR~~la~-~~~~~d~~~~~~~~~~--~~ 585 (809) T PRK13208 511 LR-AYLL-TGKLPWKNIMISGMVLDPDGKKMSKSKGNVVDPEELLEKYGADAVRYWAAN-SRLGSDTRFSEKQIKI--GK 585 (809) T ss_pred HH-HHHH-CCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHC-CCCCCCCCCCHHHHHH--HH T ss_conf 99-9985-388860201114605546774347778896897898653380999999961-8944465668999999--99 Q ss_pred HHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHH Q ss_conf 32110221021345565312332--1034555895565667899999999998775035899999999999--9997886 Q gi|255764461|r 353 DLANGIGNLVSRSVSMILKDYDG--MIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYF 428 (511) Q Consensus 353 ~L~~~lgN~~~R~~~f~~k~~~g--~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi 428 (511) .++++++|.. | |+..+.+. ..+....++..|+|+++++++++++++++|++|+|++|++.|++|+ +.+|.|| T Consensus 586 ~~~~klwN~~-r---f~~~~~~~~~~~~~~~~~~~lDrwils~l~~~i~~v~~~~e~y~f~~a~~~i~~F~~~~l~~~Yi 661 (809) T PRK13208 586 RLLTKLWNAS-R---FVSSFIEPEKIEEKAPILEPVDRWILAKLNRVVKKATEALENYDFAEALEEIESFFWHDFCDNYL 661 (809) T ss_pred HHHHHHHHHH-H---HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999-9---99970354566676322578899999999999999999997358999999999999998789999 Q ss_pred HHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 5418701216999999999999999999999985432248999999984988000795551 Q gi|255764461|r 429 DAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSL 489 (511) Q Consensus 429 ~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~ 489 (511) +..++.-..+++......+..++.++++.+++||+|||||+||+||+.|+-+ ++....++ T Consensus 662 e~~k~R~~~~~~~~~~~~a~~tL~~vL~~~l~llaP~~PfiaEeiw~~L~~~-~sV~~~~w 721 (809) T PRK13208 662 ELVKSRAYGEDGSEEQKSAIYTLYTVLRTLLKLLAPFMPFITEEIYSWLYGG-SSVHRASW 721 (809) T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEECCC T ss_conf 9988987148881889999999999999999999878899999999868999-81885799 No 13 >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=100.00 E-value=0 Score=701.45 Aligned_cols=468 Identities=25% Similarity=0.393 Sum_probs=394.8 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----CCCCH----------- Q ss_conf 817997888999988322247897899999999885898036236437022799999998----39998----------- Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----AGVTT----------- 69 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~g~~p----------- 69 (511) ++|.|.+|||+++|.||||||.++.+.|+++||+||+||+|+|+.|+|.+|++++.+.++ +|++. T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~ 112 (877) T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKK 112 (877) T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf 97279689799888651165453789999999987079733357987778830899999999870988010589999999 Q ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC Q ss_conf -999999999999999980889886747---7888899999999888754310221100010113343015566721112 Q gi|255764461|r 70 -KVFVDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA 145 (511) Q Consensus 70 -~e~~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~ 145 (511) .|+.+++...|.++|+++|+|+| |.| |.||+..++||+.|.+|+++|+||++++.++|||+|++.++|.+|.... T Consensus 113 ~weWk~e~~~~I~~Q~~rLG~S~D-WsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e 191 (877) T COG0525 113 CWEWKEESGGTIREQLRRLGVSVD-WSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKE 191 (877) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCC T ss_conf 999999998999999998478735-5531126798899999999999997894651487434788633402044500011 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 192 ~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkI 271 (877) T COG0525 192 VEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKI 271 (877) T ss_pred CCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCEEEE T ss_conf 00368999975389986389981686301026699989987666863588896468897533534733477678741897 Q ss_pred -------------------------------------------------------------------CCCCCCCCCCCEE Q ss_conf -------------------------------------------------------------------2222222332000 Q gi|255764461|r 146 -------------------------------------------------------------------DGQYYNAQHNPVQ 158 (511) Q Consensus 146 -------------------------------------------------------------------~~~~~~~~~~p~~ 158 (511) ...+|+.||.|+| T Consensus 272 tpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IE 351 (877) T COG0525 272 TPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIE 351 (877) T ss_pred CCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEE T ss_conf 16999406545301798720688899705467764458986999999999999968996766444541761167796020 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------- Q ss_conf 03454434466644444344433332100067654577541034567532343337776578642--------------- Q gi|255764461|r 159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD--------------- 223 (511) Q Consensus 159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------- 223 (511) .+-++|||+++..+++.+++..+++...+.|+.+++.+.+|+++ ++|||||||+ +||+|||.. T Consensus 352 p~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~-i~DWcISRQl-wwGh~IPvWy~~~~g~v~v~~~~~ 429 (877) T COG0525 352 PLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMEN-IRDWCISRQL-WWGHRIPVWYCKECGNVVVAEEEP 429 (877) T ss_pred EEECCEEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE-ECCCCCCEEEECCCCCEEECCCCC T ss_conf 12324214870752699999874598468168899889999863-8376422211-317635159966998389678654 Q ss_pred ----------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HH-HH---H Q ss_conf ----------------221464602444322001234676543100024110000456432100010247-76-54---3 Q gi|255764461|r 224 ----------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FL-LS---A 282 (511) Q Consensus 224 ----------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l-~~---~ 282 (511) +..|+++||++.+..+|+++|+.+ ..++.+|+|+++.+.|+|||+| |.| |+ ++ + T Consensus 430 ~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fyPt~llvtG~DIIff----Wvarmi~~~~~~~ 504 (877) T COG0525 430 EDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFYPTDLLVTGHDIIFF----WVARMIMRGLHLT 504 (877) T ss_pred CCHHHHCCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CHHHHHCCCCCEECCCCHHHHH----HHHHHHHHHHHHC T ss_conf 3535424682202057852323324115646400689874-4477735887300355313389----9999999999865 Q ss_pred HHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHC Q ss_conf 3101232333430330-586010000022111000000221112111000024787301112221110013321102210 Q gi|255764461|r 283 NLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNL 361 (511) Q Consensus 283 ~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~ 361 (511) |..+++.|++||++.. +|+|||||+||+|+|.+++++||+|++||+|++.+..|+|++|+++.+....| ++||+|| T Consensus 505 ~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn--F~nKlWN- 581 (877) T COG0525 505 GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN--FLNKLWN- 581 (877) T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHH- T ss_conf 8999627898116786888887555788589799998848589999999536888665768899888999--9999874- Q ss_pred CHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHH Q ss_conf 213455653123321034---555895565667899999999998775035899999999999--999788654187012 Q gi|255764461|r 362 VSRSVSMILKDYDGMIPT---PGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWEL 436 (511) Q Consensus 362 ~~R~~~f~~k~~~g~ip~---~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l 436 (511) ++|.+.+ ++++..+. ....+..|+|++++++++++.++++|++|+|..|.+.+++|+ ++|++|++..|| .+ T Consensus 582 a~Rfv~~---~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~-~l 657 (877) T COG0525 582 ATRFVLM---NLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP-RL 657 (877) T ss_pred HHHHHHH---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH T ss_conf 9999985---2544576543322235488999999999999999999862378899999999699898999998214-40 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 16999999999999999999999985432248999999984988000795551 Q gi|255764461|r 437 KKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSL 489 (511) Q Consensus 437 ~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~ 489 (511) ..+ .+....+.+++..++..+.+||||||||+||+||+.|... +++....+ T Consensus 658 ~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-~si~~~~~ 708 (877) T COG0525 658 YGG-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-ESIHLASW 708 (877) T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC-CEEEECCC T ss_conf 285-7778999999999999999984887750157899865898-83784168 No 14 >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=693.75 Aligned_cols=480 Identities=24% Similarity=0.386 Sum_probs=383.7 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CC-------------- Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-99-------------- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GV-------------- 67 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~-------------- 67 (511) ++++|++-.|||||||.|||||+++++..|+++||+||+|++|+|+.|||+||+||+.+++++ |+ T Consensus 33 ~~~~f~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~V~~~~GwD~hGLPiE~~vek~lgi~~k~~i~~~gi~~F 112 (1042) T PRK06039 33 GGPEFVFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEKYGIEKF 112 (1042) T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHH T ss_conf 99978996789987887214366878999999999873899668989748677899999999847667642655289999 Q ss_pred --CHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC Q ss_conf --98999999999999999980889886--74778888999999998887543102211000101133430155667211 Q gi|255764461|r 68 --TTKVFVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK 143 (511) Q Consensus 68 --~p~e~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~ 143 (511) .|++++.+|.+.++++++++|+++|+ -+.|.+|.+.+.++++|.+|+++|+||++..+++|||.|++.|++.+|.. T Consensus 113 ~~~cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~~L~ekGliYrg~~~V~wcp~~~T~Lad~Ev~~ 192 (1042) T PRK06039 113 NEECRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALKQLYDKGLLYEGYRVVPYCPRCETPLSNHEVRQ 192 (1042) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCCCCHHHHHHC T ss_conf 99999999999999999999818205268982768988999999999999987998962713254898898811867305 Q ss_pred C-----------------C------------------------------------------------------------- Q ss_conf 1-----------------2------------------------------------------------------------- Q gi|255764461|r 144 G-----------------A------------------------------------------------------------- 145 (511) Q Consensus 144 ~-----------------~------------------------------------------------------------- 145 (511) + . T Consensus 193 ~Y~~~~~~s~~vkF~l~~~~~~~l~iwTTrPwTl~~n~avaV~Pd~~Y~~v~~~~~~e~~i~a~~~~~~~~~~~~~~~~~ 272 (1042) T PRK06039 193 GYKEVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVGPDIDYVKVRDKGGGEVYILAEALLEKVLKKEGGEEYE 272 (1042) T ss_pred CCEEEECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCEE T ss_conf 74441446499999975279847998658875111135999868763699984489759998088899998551675407 Q ss_pred ---------------------------------------------------------------------------CC--- Q ss_conf ---------------------------------------------------------------------------22--- Q gi|255764461|r 146 ---------------------------------------------------------------------------DG--- 147 (511) Q Consensus 146 ---------------------------------------------------------------------------~~--- 147 (511) +| T Consensus 273 v~~~~~G~~L~G~~y~~p~~~~~~~~~~~~~~Vi~~d~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~vd~~G~~~ 352 (1042) T PRK06039 273 VLETFKGEELEGLRYEPPFPYFVPEDEENAFRVVAADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDNGRFT 352 (1042) T ss_pred EEEEEECHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 88775124307888778864323667787427995472057889742896788988999999983998666317755334 Q ss_pred --------------------------------------CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf --------------------------------------222223320000345443446664444434443333210006 Q gi|255764461|r 148 --------------------------------------QYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP 189 (511) Q Consensus 148 --------------------------------------~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p 189 (511) -+|..|++|++++.++|||++++++++++.+..+. ..| .| T Consensus 353 ~~~~~~~G~~v~da~~~Ii~~L~~~g~l~~~~~~~Hsyp~cwR~~~pli~~~~~QWFi~~~~~k~~~l~~~~~-i~w-~P 430 (1042) T PRK06039 353 EEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYRAVESWFIRVTKIKDRMLELNQK-INW-YP 430 (1042) T ss_pred CCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHC-CEE-EC T ss_conf 6443517936530209999999866752246633557874257798148633262776557679999998602-147-34 Q ss_pred HHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------------- Q ss_conf 76545-77541034567532343337776578642--------------------------------------------- Q gi|255764461|r 190 IERRN-EVISFVKSGLKDLSLSRKTFDWGIKIPDD--------------------------------------------- 223 (511) Q Consensus 190 ~~~~~-~~~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------------------------------------- 223 (511) ++++. ++.+||++ ++|||||||| +||+|||.. T Consensus 431 ~~~~~~rf~~wl~n-~~DW~ISRQR-~WG~PIPvw~~~~~~~~~v~~s~~el~~~~~~~~~~dlhrp~iD~v~~~~~~~~ 508 (1042) T PRK06039 431 EHIKDGRFGKWLEN-ARDWAISRNR-YWGTPLPIWRCEDCGRIDVIGSIEELEEDFGVPKPIDLHRPYIDEVTLPCPDCG 508 (1042) T ss_pred CCCCCCHHHHHHHH-CCCHHHHCCC-CCCCCCEEEEECCCCCEEECCCHHHHHHHCCCCCCCHHCCCCCCCEEECCCCCC T ss_conf 52320069999863-6331100023-457754069967999667028699998760888830102454550565589986 Q ss_pred -----CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf -----2214646024443220012346765431000241100004564321--000102477654331012323334303 Q gi|255764461|r 224 -----PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKVFSHGFI 296 (511) Q Consensus 224 -----~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i~~~g~l 296 (511) +..|++||||+.+.+.++.+|+.+....++++||+|+...|.|+++ |++++-.++++ .|..++++|++|||+ T Consensus 509 ~~~~r~~DvlD~WfdSg~~p~a~~~~p~~~~~~f~~~~PaD~i~eg~Dq~RgWF~sl~~~s~~~-~~~~Pfk~v~~~G~V 587 (1042) T PRK06039 509 TGMRRVPDVLDVWFDSGSMPYAQLHYPFENKELFEEHFPADFIVEGIDQTRGWFYTLLALSTAL-FDRPPYKNVIVHGHV 587 (1042) T ss_pred CCCCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCHHEEEEEEEEEEEEEE-CCCCCCCEEEEEEEE T ss_conf 2103056421237635874406977864366666215864444523222101436000321223-484200258995038 Q ss_pred EE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 30-58601000002211100000022111211100002478730111222111001332110221021345565312332 Q gi|255764461|r 297 LH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDG 375 (511) Q Consensus 297 ~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g 375 (511) +. +|+|||||+||+|+|.+++++||||++|+|+++..++++|+.||++++.+.++. +.++++| +.|...+ ..+.++ T Consensus 588 ld~~G~KMSKS~GNvidP~~vi~~yGADalRl~l~~~~~~~~d~~f~~~~v~e~~r~-~~~~lwN-~~rF~~~-y~~ld~ 664 (1042) T PRK06039 588 LDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSVPWEDLRFSEDGIREVVRK-FLLPLWN-VYSFFAL-YANLDG 664 (1042) T ss_pred ECCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHH-HHHHHHH-HHHHHHH-HHHCCC T ss_conf 736864803367886897999886082799999996677555615779999999999-9999999-9999987-421027 Q ss_pred CCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHCC--CHHHCCCHHHHHHH Q ss_conf 103-----45558955656678999999999987750358999999999999-99788654187--01216999999999 Q gi|255764461|r 376 MIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVS-EVDRYFDAQKP--WELKKTNPDRASTV 447 (511) Q Consensus 376 ~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~-~~N~yi~~~~P--W~l~k~d~~~~~~v 447 (511) .-| ....+...|+|+++++++++++++++|++|+|++|++.|++|++ .+|+|++..++ |.-. .+.++ ..+ T Consensus 665 f~~~~~~~~~~~~~~~DrWils~l~~~i~~v~~~~~~y~~~~a~~~l~~Fi~dLs~wYi~~~r~R~~~~~-~~~~k-~~A 742 (1042) T PRK06039 665 FDPNEAEEALDSRNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEE-DDPDK-LAA 742 (1042) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHH-HHH T ss_conf 9954355563216687899999999999999999972459999999999998877999999778760368-97899-999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCCC Q ss_conf 999999999999985432248999999984988--000795551012 Q gi|255764461|r 448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQR 492 (511) Q Consensus 448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~~ 492 (511) ..++.++|..+++||+|||||+||+||+.|..+ +++.++.++++. T Consensus 743 ~~tL~~vL~~l~~llAP~~PFitEeiyq~L~~~~~~eSVHl~~~P~~ 789 (1042) T PRK06039 743 YNTLYTVLETLSRLMAPFTPFIAEEIYQNLKGETGPESVHLADWPEV 789 (1042) T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC T ss_conf 99999999999999650136769999984455899951798146776 No 15 >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=669.43 Aligned_cols=470 Identities=23% Similarity=0.335 Sum_probs=367.1 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-C-----CCHH------ Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-9-----9989------ Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-G-----VTTK------ 70 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g-----~~p~------ 70 (511) ++++|++.-|||||||.||||||++++..|+++||+||+||+|+|++|||+||+|||.+|+++ | +++. T Consensus 47 ~~~~f~l~dgPPyanG~lH~GHaln~tlkDii~Rykrm~G~~v~~~pGwD~hGLPiE~~v~k~~g~~~~~~~~~~f~~~c 126 (910) T PRK05743 47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKRKKLSAAEFRKKC 126 (910) T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 98977982799998986424477878999999999875899679999658686999999999619981319999999999 Q ss_pred -HHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC-- Q ss_conf -99999999999999980889886--7477888899999999888754310221100010113343015566721112-- Q gi|255764461|r 71 -VFVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA-- 145 (511) Q Consensus 71 -e~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~-- 145 (511) +++.++.+.++++++++|+++|+ -+.|.+|++.+.++++|.+|+++|+||++..+++|||.|++.|++.+|++.. T Consensus 127 r~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~d~~y~~~~~~~F~~l~ekGliYr~~kpV~Wcp~~~TaLA~~EVey~d~~ 206 (910) T PRK05743 127 REYALEQVDIQREDFKRLGVLGDWDNPYLTMDFEYEANIIRVLGKMAKKGYLYKGLKPVYWSPDCGSALAEAEVEYHDKT 206 (910) T ss_pred HHHHHHHHHHHHHHHHHHCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCCCCHHEECCCEE T ss_conf 99999999999999997190264589726689889999999999999869968578232048999944001010057754 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 207 s~si~v~f~l~~~~~~~~~~~~~~~~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~ 286 (910) T PRK05743 207 SPSIYVAFPVVDGKAGLDGLKDASLVIWTTTPWTLPANQAIAVHPELDYALVEVGEKLILAKDLVESVLKRLGWEDYEVL 286 (910) T ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHCCCEEEECCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCEEEE T ss_conf 32599998943763333456774399970884034206468877875056403674554199899999998477430665 Q ss_pred ------------------------------------------------------------------CC------------ Q ss_conf ------------------------------------------------------------------22------------ Q gi|255764461|r 146 ------------------------------------------------------------------DG------------ 147 (511) Q Consensus 146 ------------------------------------------------------------------~~------------ 147 (511) +| T Consensus 287 ~~~~G~~L~g~~~~~P~~~~~~pii~~d~V~~~~GTG~Vh~aPaHg~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~ 366 (910) T PRK05743 287 ATFKGAELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGVYTEEAPLFAGL 366 (910) T ss_pred EEEECCEECCCEEECCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 32205350376897677896522784473267777611885787984367788764998654458776343677445883 Q ss_pred -----------------------------CCCCCCCCCEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf -----------------------------222223320000345443446664--4444344433332100067654577 Q gi|255764461|r 148 -----------------------------QYYNAQHNPVQWMEEEGYFFRLSA--YQDKLLSYYESHPEFILPIERRNEV 196 (511) Q Consensus 148 -----------------------------~~~~~~~~p~~~~~~~~~f~~l~~--~~~~l~~~~~~~~~~~~p~~~~~~~ 196 (511) -+|..|++|+.++.++|||++++. +++++++.++. .. +.|+..++.+ T Consensus 367 ~v~~a~~~Ii~~L~~~g~L~~~~~~~Hsyp~cwR~~~Pvi~rat~QWFi~~d~~~~r~~~l~~i~~-v~-~~P~~~~~r~ 444 (910) T PRK05743 367 FVFKANPKIIELLEEKGALLKLEKITHSYPHCWRTKKPIIFRATPQWFISMDKKTLREQALKAIEK-VK-WIPSWGKNRI 444 (910) T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHH-CC-EECHHHHHHH T ss_conf 499889999999987798543421013675332668862676310034234718899999999984-67-4151678799 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------------------CCC Q ss_conf 541034567532343337776578642--------------------------------------------------221 Q gi|255764461|r 197 ISFVKSGLKDLSLSRKTFDWGIKIPDD--------------------------------------------------PQY 226 (511) Q Consensus 197 ~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------------------------------------------~~~ 226 (511) .+|+++ ++|||||||| +||+|||-. +.. T Consensus 445 ~~~i~~-r~DWcISRQR-~WG~PIPv~~~~~~~~~~~~~~~~~~i~~~~~~~G~d~w~~~~~~~~l~~~~~~~~~~r~~D 522 (910) T PRK05743 445 ESMVEN-RPDWCISRQR-TWGVPIPIFYHKETGELHRTPELIEHVAKLFEKEGIDAWFELDAKELLPEGYPADQYEKETD 522 (910) T ss_pred HHHHHC-CCCCEEECCC-CCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHEEECCC T ss_conf 999707-9886252135-66882259997899700476888999999887507641123999883789898310064475 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCCCCCCCEEE-CCCCC Q ss_conf 4646024443220012346765431000241100004564321--00010247765433101232333430330-58601 Q gi|255764461|r 227 IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKVFSHGFILH-KGEKI 303 (511) Q Consensus 227 ~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~-~G~KM 303 (511) |++||||+.. .|..-........||+|+++.|.|+.+ ||+.+..++.+ .|..++++|++|||++. +|+|| T Consensus 523 vlD~WFdSGs------s~~~~~~~~~~~~~PaDly~eG~Dq~RgWF~s~ll~s~~~-~~~~Pfk~v~~hG~vlD~~G~KM 595 (910) T PRK05743 523 ILDVWFDSGS------THAAVLEDRERLGYPADLYLEGSDQHRGWFQSSLLTSVAT-NGKAPYKQVLTHGFTVDGKGRKM 595 (910) T ss_pred CCCCEECCCC------CCHHHCCCCCCCCCCCCEEECCCCHHHEEHHHHHHHEEEE-CCCCCEEEEEECCEEECCCCCCC T ss_conf 5321002798------6311114662116843232337652210236622122452-17888417986132898988888 Q ss_pred CHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC----- Q ss_conf 000002211100000022111211100002478730111222111001332110221021345565312332103----- Q gi|255764461|r 304 SKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIP----- 378 (511) Q Consensus 304 SKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip----- 378 (511) |||+||+|+|.+++++||||++|+|+++ .+++.|+.||.+-+.+. ++...+++| +.+|+..+.++.-| T Consensus 596 SKS~GNvidP~~ii~~yGAD~lRlwvas-~d~~~d~~~s~~il~~~--~~~yrKi~N----t~rf~l~nl~~f~~~~~~~ 668 (910) T PRK05743 596 SKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQV--AESYRRIRN----TLRFLLGNLNDFDPAKDAV 668 (910) T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCHHHHHHH--HHHHHHHHH----HHHHHHHHHCCCCCCCCCC T ss_conf 8878777998999865494099999872-57434545568999889--999999999----9999986321688322458 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHC--CCHHHHHHHHHHHHHH Q ss_conf 4555895565667899999999998775035899999999999--99978865418701216--9999999999999999 Q gi|255764461|r 379 TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKK--TNPDRASTVLYVTVEV 454 (511) Q Consensus 379 ~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~ 454 (511) ....+...|+|+++++++++++++++|++|+|+.|++.|++|+ +.+|.|++..++ .++. .+..+...+..++.++ T Consensus 669 ~~~~l~~lD~wiL~~l~~~~~~v~~~~~~y~f~~a~~~l~~F~~~dls~~Y~~~~Kd-rly~~~~~~~~R~s~q~~L~~v 747 (910) T PRK05743 669 PYEELVELDRWALHRLNELQEEIIEAYENYDFHKVYQALHNFCSVDLSSFYLDIIKD-RLYTDKADSLARRSAQTALYHI 747 (910) T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH T ss_conf 924465768999999999999999998635588999999988575687999876124-4414789849999999999999 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCC Q ss_conf 9999998543224899999998498800079555101 Q gi|255764461|r 455 IRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQ 491 (511) Q Consensus 455 l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~ 491 (511) +..++++|+|||||+||+||+.|+...++....++.+ T Consensus 748 l~~l~~llaPi~Pf~~EEiw~~l~~~~~SV~l~~wp~ 784 (910) T PRK05743 748 LEALVRWLAPILSFTAEEIWQYLPEREESVFLEEWPE 784 (910) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC T ss_conf 9999999986646999999973889999768267999 No 16 >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Probab=100.00 E-value=0 Score=662.27 Aligned_cols=469 Identities=23% Similarity=0.354 Sum_probs=362.0 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC----CCC---------- Q ss_conf 888179978889999883222478978999999998858980362364370227999999983----999---------- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA----GVT---------- 68 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~----g~~---------- 68 (511) ++++|++--+||||||.|||||+++|+..|+++||+||+|++|+|+.|||+||+|||.+++|+ |++ T Consensus 52 ~~~~f~~~dGPPyanG~lH~GHaln~tikDii~Rykrm~G~~V~~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~f~ 131 (966) T PRK13804 52 GRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPLNEFR 131 (966) T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHH T ss_conf 99976995799999998612255666899999999874899668999768887899999999776528982338999999 Q ss_pred --HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCC Q ss_conf --899999999999999998088988--6747788889999999988875431022110001011334301556672111 Q gi|255764461|r 69 --TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKG 144 (511) Q Consensus 69 --p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~ 144 (511) +++++.++.+.++++++++|+++| +-+.|++|++.+.++++|.+|+++|+||++..+++|||.|++.|++.+|.+. T Consensus 132 ~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~dp~y~~~~~~~F~~l~ekGliYr~~~pV~Wcp~~~TaLA~~EVey~ 211 (966) T PRK13804 132 KECREYALSWIDVQREEFKRLGVIGDWENPYTTMDFHAEARIAREFMKFAAKGQLYRGSKPVMWSVVERTALAEAEVEYH 211 (966) T ss_pred HHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCC T ss_conf 99999999999999999998292022589842289899999999999999879988438514768988866236754766 Q ss_pred C------------------------------------------------------------------------------- Q ss_conf 2------------------------------------------------------------------------------- Q gi|255764461|r 145 A------------------------------------------------------------------------------- 145 (511) Q Consensus 145 ~------------------------------------------------------------------------------- 145 (511) . T Consensus 212 d~~s~s~~v~f~v~~~~~~~~~~~~l~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~l~e~~ 291 (966) T PRK13804 212 DHESDTIWVKFPVKDGKGILLTGASVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDNWAKPGEKLVVADALAESV 291 (966) T ss_pred CEECCEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHH T ss_conf 78666699998734662000478706775078502202102024577643789950454211244551566547789999 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 292 ~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~~L~~~~ 371 (966) T PRK13804 292 AKKAGVESFERVRDVKADDLEAIVCAHPLKGLDGGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFEVWMKYGRELEV 371 (966) T ss_pred HHHHCCCCEEEEEEECCCEECCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC T ss_conf 98737642278730015000476652666555666671578981683156778563775577887889999983987310 Q ss_pred ----------C-------------------C------------------------------CCCCCCCCCEECCCCCCCC Q ss_conf ----------2-------------------2------------------------------2222233200003454434 Q gi|255764461|r 146 ----------D-------------------G------------------------------QYYNAQHNPVQWMEEEGYF 166 (511) Q Consensus 146 ----------~-------------------~------------------------------~~~~~~~~p~~~~~~~~~f 166 (511) + | -+|..|+.|++++.++||| T Consensus 372 ~~~i~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~~a~~~Ii~~L~e~g~L~~~~~~~HsyP~~wR~~~Pvi~r~t~QWF 451 (966) T PRK13804 372 RTAIPFTVDEDGFYTEDAPGFGGARVIDDKGKKYGDANKAVIEALIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWF 451 (966) T ss_pred CCCCCCCCCCCCEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEE T ss_conf 35778756887606545600125542134687365627999999996799645564124776345678627996046147 Q ss_pred CCCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------------- Q ss_conf 46664-------4444344433332100067654577541034567532343337776578642---------------- Q gi|255764461|r 167 FRLSA-------YQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD---------------- 223 (511) Q Consensus 167 ~~l~~-------~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~---------------- 223 (511) +++++ +++++++.++. .. +.|+..++.+.+|+++ ++|||||||| +||+|||.. T Consensus 452 i~~~~~~~~~~~lr~~~l~~i~~-v~-~~P~~~~~r~~~~l~~-~~DW~ISRQR-yWG~PIPi~~~e~~~~~~~~~~~~~ 527 (966) T PRK13804 452 ISMDKDLGDGGTLRSRALDAIKK-TR-FVPAAGQNRLRGMIED-RPDWVISRQR-AWGVPIPVFVDENGEILMDDEVNER 527 (966) T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CC-CCCHHHHHHHHHCCCC-CCCCEEECCC-CCCCCCCEEECCCCCCCCCHHHHHH T ss_conf 87353432138999999987654-35-0653434455512157-8676663113-4588751798379974457567789 Q ss_pred ----------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC Q ss_conf ----------------------------------2214646024443220012346765431000241100004564321 Q gi|255764461|r 224 ----------------------------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR 269 (511) Q Consensus 224 ----------------------------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~ 269 (511) +..|++||||+... |...........||+|+++.|.|+.+ T Consensus 528 i~~~~~~~g~d~w~~~~~~~~~~~~~~~~~~~~r~~DvlD~WfdSgss------~~~~~~~~~~~~~PaD~y~eG~Dq~r 601 (966) T PRK13804 528 IADAFEEEGADAWFAEGAKERFLGGFHPGEEWTKVTDILDVWFDSGST------HAFVLEDRPDLPWPADLYLEGSDQHR 601 (966) T ss_pred HHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHEECCCHHHHHHHCCCC------CCCCCCCHHHCCCCCCEEECCCCHHH T ss_conf 999987618763334574765588878745507413114466515775------32011585445897416862541888 Q ss_pred --HHCCHHHHHHHHHHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCC Q ss_conf --00010247765433101232333430330-586010000022111000000221112111000024787301112221 Q gi|255764461|r 270 --FHAIYWPAFLLSANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGL 346 (511) Q Consensus 270 --Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~ 346 (511) ||+.+..+.. ..+..++++|++|||++. +|+|||||+||+|+|.+++++||||++|+|+++ .++++|+.|+++.+ T Consensus 602 gWF~s~l~~s~~-~~~~~Pfk~v~~hG~VlDe~G~KMSKS~GNvvdP~~ii~~yGADalRl~~as-~~~~~d~~~~~~~l 679 (966) T PRK13804 602 GWFHSSLLESCG-TRGRAPYKAVLTHGFTLDEKGEKMSKSLGNVVDPQDVIKQSGADILRLWVAS-VDYQDDQRIGKEIL 679 (966) T ss_pred HHHHHHHHHHHC-CCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCHHHH T ss_conf 699999987422-0688774510341168988988887878898998999987292188899984-77544634568999 Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH- Q ss_conf 11001332110221021345565312332103----4555895565667899999999998775035899999999999- Q gi|255764461|r 347 KKRVNADLANGIGNLVSRSVSMILKDYDGMIP----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV- 421 (511) Q Consensus 347 ~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~- 421 (511) .+. ++...+++| +++|+..+.++.-| ....+...|+|+++++++++++++++|++|+|++|++.|++|+ T Consensus 680 ~~~--~~~~~ki~N----t~rf~l~nl~~f~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~Y~f~~a~~~l~~F~~ 753 (966) T PRK13804 680 KTN--AETYRKLRN----TLRWMLGTLAHFDPGEAVAYADLPELERLMLHRLNELDATVRKAYEAFDFKTIYKALVNFMT 753 (966) T ss_pred HHH--HHHHHHHHH----HHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999--999999999----99999986427983234892235287899999999999999998511359999999999999 Q ss_pred -HHHHHHHHHHCCCHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCCCCHHHHC Q ss_conf -99978865418701216--99999999999999999999998543224899999998498-80007955510 Q gi|255764461|r 422 -SEVDRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFV-ADENRCFQSLD 490 (511) Q Consensus 422 -~~~N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~-~~~~~~~~~~~ 490 (511) +.+|.||+..++ .+.. .+......+..++.+++..++++|+|||||+||+||+.+.. .+++..+.++. T Consensus 754 ~dLs~~Yle~~Kd-rly~~~~~~~~rrsaq~~L~~il~~l~~llAPi~Pf~aEEiw~~~~~~~~~Sv~l~~~p 825 (966) T PRK13804 754 VDLSAFYFDIRKD-ALYCDAPSSLRRKAALTVIYEIFDRLTKWLAPILPFTTEEAWLYRYPEEEVSVHLEQFP 825 (966) T ss_pred HHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC T ss_conf 8787999988437-54057998399999999999999999999976728999999972557899876711489 No 17 >TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=100.00 E-value=0 Score=645.35 Aligned_cols=465 Identities=24% Similarity=0.373 Sum_probs=378.6 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCC------------- Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-999------------- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVT------------- 68 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~------------- 68 (511) +++.|+.==+||||||.||||||.+-|+.|++.||+.|+||+|.|.+||||||+|||.++++. |++ T Consensus 34 ~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pGWDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~ 113 (938) T TIGR00392 34 DKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPGWDTHGLPIELKVEKKLGISGKKEIESLEGIEE 113 (938) T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH T ss_conf 99835874485876799740255666761123210112250032047866578702445640478764000220443899 Q ss_pred ----HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHC Q ss_conf ----899999999999999998088988--67477888899999999888754310221100010113343015566721 Q gi|255764461|r 69 ----TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVY 142 (511) Q Consensus 69 ----p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~ 142 (511) |+++|-++.+.+++++++||+=.| .-+-|.++++.+.+.++|++|++||+||++-.+++|||.|++.|++.||. T Consensus 114 fr~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~l~~~~eKGL~~~~~kpv~WSp~~~TaLAeaE~e 193 (938) T TIGR00392 114 FREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLLKELHEKGLLYRGLKPVYWSPRCETALAEAEVE 193 (938) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCHHHHHHHC T ss_conf 99999999999999999888853120225578506788999999999999975242022552211441446702476305 Q ss_pred CC------C----------------------------------------------------------------------- Q ss_conf 11------2----------------------------------------------------------------------- Q gi|255764461|r 143 KG------A----------------------------------------------------------------------- 145 (511) Q Consensus 143 ~~------~----------------------------------------------------------------------- 145 (511) +. - T Consensus 194 y~~~Y~d~v~dpS~yv~F~~~~~~~~~rh~~~~~~~~n~~~~~l~iWTTTPWTLPaN~Aiav~pd~eY~~~~~~~~y~g~ 273 (938) T TIGR00392 194 YKEEYKDNVKDPSIYVKFPVKKDSKTERHAKVKLSGVNGLDISLVIWTTTPWTLPANLAIAVHPDFEYALVQLETDYSGK 273 (938) T ss_pred CCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHEEECCCEEEEEEEECCCCCCC T ss_conf 88732157606228898753156125678874268757888689996688714466416011445068999866874663 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 274 ~~~~i~a~~L~e~l~~~~g~~h~~~~~e~~~~~kG~~Le~l~Y~hpl~~~~~~~~~m~~~~L~~~~~~~e~~~~v~~gdh 353 (938) T TIGR00392 274 EEYLILAKKLVEKLLNKLGVEHDITDYEIIKTFKGSDLEGLEYEHPLYDKVSQLKGMVVEELIERVDEKEGAPVVIGGDH 353 (938) T ss_pred EEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCE T ss_conf 12555125678988642155345311078655516441652465266532201156325232231068986448984004 Q ss_pred ----------------------------------------------------------CCC------------------- Q ss_conf ----------------------------------------------------------222------------------- Q gi|255764461|r 146 ----------------------------------------------------------DGQ------------------- 148 (511) Q Consensus 146 ----------------------------------------------------------~~~------------------- 148 (511) ++. T Consensus 354 VT~~~GTG~VHtAPghG~eDy~~g~kygl~~e~~~pvD~~G~y~~~~~~~~G~~v~~~d~~yi~~~~R~V~~Ayd~~An~ 433 (938) T TIGR00392 354 VTTEDGTGIVHTAPGHGEEDYEIGKKYGLPDEVLSPVDEKGVYTEEVADFKGRFVKDADKDYIIIKGRYVKDAYDDEANK 433 (938) T ss_pred EECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHH T ss_conf 54688972268788987328999998289864314668776033667774454166448722454374100043346899 Q ss_pred -----------------------CCCCCCCCEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCC Q ss_conf -----------------------222233200003454434466--64444434443333210006765-4577541034 Q gi|255764461|r 149 -----------------------YYNAQHNPVQWMEEEGYFFRL--SAYQDKLLSYYESHPEFILPIER-RNEVISFVKS 202 (511) Q Consensus 149 -----------------------~~~~~~~p~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~wl~~ 202 (511) +|..|+.|+.+|+++|||+++ +.+++++++-++. ..| .|.+. .+++.+||++ T Consensus 434 ~I~~~L~~~~~Ll~~e~i~H~YPhcWRtk~P~IYRAt~QWF~~~D~~~~k~~~L~~i~~-v~W-~P~~~k~~R~~~~~~n 511 (938) T TIGR00392 434 IIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKIDEKKIKDQMLEEIKK-VKW-VPEWGKEGRFKNWLEN 511 (938) T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCCC-EEE-CCCCCCCHHHHHHHHC T ss_conf 99999842697788766550587707789845720472214663547778999986283-276-1463221467887611 Q ss_pred CCCCCCCCCCCCCCCCCCCCC---------------------------------------------------------CC Q ss_conf 567532343337776578642---------------------------------------------------------22 Q gi|255764461|r 203 GLKDLSLSRKTFDWGIKIPDD---------------------------------------------------------PQ 225 (511) Q Consensus 203 gl~Dw~ISR~~~~WGipiP~~---------------------------------------------------------~~ 225 (511) .+|||||||| +||||||-. .. T Consensus 512 -~~DWcISRQR-~WG~PIP~w~~e~~~~~~l~~~gsi~el~~~~~~~~G~~~w~~d~~~~~~d~~~~~~~~g~~~y~r~~ 589 (938) T TIGR00392 512 -RKDWCISRQR-YWGVPIPVWYCEDTGEPVLIVVGSIEELEELIEVEKGIDAWFEDLHKDLLDKITLESGSGGGEYRRVP 589 (938) T ss_pred -CCCCEEECCC-CCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC T ss_conf -6765263356-25897406886678832677604089999999987256632223444457741345889984258712 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHHHH--HHHCCCCCCCCCCEEEC-C Q ss_conf 1464602444322001234676543100024110000456432--10001024776543--31012323334303305-8 Q gi|255764461|r 226 YIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLLSA--NLPLPKKVFSHGFILHK-G 300 (511) Q Consensus 226 ~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~~~--~~~~p~~i~~~g~l~~~-G 300 (511) .|++||||+...+-++.++..+. ..+...+|+|+..-|-|+. ||++..--+. +.. |..++|.|++|||++.+ | T Consensus 590 DvlDVWFDSGs~~~A~~~~~~~~-~~~~~~~pAD~i~EG~DQ~RGWFySsl~~~~-~~~nv~~~PYK~Vi~hGF~LDe~G 667 (938) T TIGR00392 590 DVLDVWFDSGSMPYAVLHYPFEN-EKFKEVFPADFILEGSDQTRGWFYSSLLIGV-ALFNVGKAPYKNVITHGFTLDEKG 667 (938) T ss_pred EEEEEECCCCHHHHHHHHCCCCC-HHHCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHCCCCCCCCEEEECCEEECCCC T ss_conf 15545114001179986323210-0103578302686033555327799999999-987078854363453154885778 Q ss_pred CCCCHHHCCCCCCCCHHH--------HCCCCCCCHHHEEE-CCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHH- Q ss_conf 601000002211100000--------02211121110000-24787301112221110013321102210213455653- Q gi|255764461|r 301 EKISKSLGNVIDPIEVIE--------EVGVDALRYFLVRE-IACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMIL- 370 (511) Q Consensus 301 ~KMSKS~GN~I~~~e~l~--------~~g~D~lR~~l~~~-~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~- 370 (511) +|||||+||+|+|.++++ +||||+||||+++. ..+..|+.|+++.+.+. ++.+.+.++| +.+|+. T Consensus 668 ~KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRlyv~~~P~~~~~Dl~~~~~~~~~v-~~~~~~~~~N----~~~Fl~~ 742 (938) T TIGR00392 668 RKMSKSLGNVVDPEKVINGDENLKLPKYGADILRLYVASSPSDYWEDLRFSDEILKQV-AEKYRKIRWN----TYRFLLT 742 (938) T ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCHHHHHHH-HHHHHHHHHH----HHHHHHH T ss_conf 5445325870385997088433588753304877778846874000220066899999-9987688999----9999999 Q ss_pred -HCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHCC--CHHHCCC Q ss_conf -12332103-----45558955656678999999999987750358999999999999--99788654187--0121699 Q gi|255764461|r 371 -KDYDGMIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVS--EVDRYFDAQKP--WELKKTN 440 (511) Q Consensus 371 -k~~~g~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~--~~N~yi~~~~P--W~l~k~d 440 (511) .++++.-| +...+.+.|+|++++++++++.++++||+|+|+++++.|++|+. ..|+||+..++ |.-.+++ T Consensus 743 YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~~v~~~~e~Y~f~~~~~~l~~F~~~~LS~wY~~~~rdr~y~~~~~~ 822 (938) T TIGR00392 743 YANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYIEAKDN 822 (938) T ss_pred HHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH T ss_conf 88760778730023112030113999999999999999986263246788889876312000456666543422578981 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC Q ss_conf 999999999999999999998543224899999998498 Q gi|255764461|r 441 PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFV 479 (511) Q Consensus 441 ~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~ 479 (511) +.+..+..++.++|..++.+|+||+||+||+||+.|-. T Consensus 823 -~~rr~~q~tL~~~l~~l~~~lAP~~Ph~ae~~y~~l~~ 860 (938) T TIGR00392 823 -DKRRAAQTTLYYALLTLVKLLAPILPHTAEEIYQNLKG 860 (938) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf -78999999999999999998701157999999864240 No 18 >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=100.00 E-value=0 Score=634.00 Aligned_cols=472 Identities=25% Similarity=0.406 Sum_probs=376.8 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CC--------C----- Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-99--------9----- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GV--------T----- 68 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~--------~----- 68 (511) ++++|+.--+||||||.+|||||.+-++.|++.||+.|+||+|.|+.||||||+|||.+++++ |+ . T Consensus 47 g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr 126 (933) T COG0060 47 GKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFR 126 (933) T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCHHHHH T ss_conf 99808974799977898226566776666634333204588589889976788228899999828763114334899999 Q ss_pred --HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCC Q ss_conf --899999999999999998088988--6747788889999999988875431022110001011334301556672111 Q gi|255764461|r 69 --TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKG 144 (511) Q Consensus 69 --p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~ 144 (511) |+++|.++.+.++++++++|+-.| +=+.|.++.+.+.+.++|+++++||++|++..+++|||.|++.|++.+|+++ T Consensus 127 ~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~ 206 (933) T COG0060 127 EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG 206 (933) T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCHHHHHHCCC T ss_conf 99999999999999999876367632689803278899999999999999779752277001226877760036664025 Q ss_pred C------------------------------------------------------------------------------- Q ss_conf 2------------------------------------------------------------------------------- Q gi|255764461|r 145 A------------------------------------------------------------------------------- 145 (511) Q Consensus 145 ~------------------------------------------------------------------------------- 145 (511) . T Consensus 207 d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl 286 (933) T COG0060 207 DVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL 286 (933) T ss_pred CCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEE T ss_conf 66896289997733578877707999948987731004367679851699997888999829989999987098420776 Q ss_pred -----------------------------------------------------------------------CC------- Q ss_conf -----------------------------------------------------------------------22------- Q gi|255764461|r 146 -----------------------------------------------------------------------DG------- 147 (511) Q Consensus 146 -----------------------------------------------------------------------~~------- 147 (511) +| T Consensus 287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~ 366 (933) T COG0060 287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP 366 (933) T ss_pred EEEEHHHHCCCEEECCCCCCCCCCEEEEEECCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH T ss_conf 77553662878764887654545604688527672279841056389898789999998299676466688855666543 Q ss_pred ----------------------------------CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf ----------------------------------2222233200003454434466644444344433332100067654 Q gi|255764461|r 148 ----------------------------------QYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERR 193 (511) Q Consensus 148 ----------------------------------~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 193 (511) -+|..|++|+.++.++|||++++++++++++-++ ...| .|.+.+ T Consensus 367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~-~v~w-~P~~~~ 444 (933) T COG0060 367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEIN-KVNW-VPDWGK 444 (933) T ss_pred HHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHH-CCEE-ECHHHH T ss_conf 21782400078999999986795315335775798666789806985052033678889999999985-5568-871578 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----------------------------------------C----C--- Q ss_conf 577541034567532343337776578642-----------------------------------------2----2--- Q gi|255764461|r 194 NEVISFVKSGLKDLSLSRKTFDWGIKIPDD-----------------------------------------P----Q--- 225 (511) Q Consensus 194 ~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~-----------------------------------------~----~--- 225 (511) +++.+|+++ .+|||||||| +||+|||-. + + T Consensus 445 ~R~~~mve~-r~DW~ISRQR-~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~ 522 (933) T COG0060 445 NRFGNMVEN-RPDWCISRQR-YWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEY 522 (933) T ss_pred HHHHHHHCC-CCCCEEECCC-CCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCCCCCCCEE T ss_conf 999999718-9864365166-67885337998899974232899999998774321726651563476457888876505 Q ss_pred ----CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf ----1464602444322001234676543100024110000456432--1000102477654331012323334303305 Q gi|255764461|r 226 ----YIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLLSANLPLPKKVFSHGFILHK 299 (511) Q Consensus 226 ----~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~ 299 (511) .|++||||+...+.++.+ . .++..+...| +|+..-|-|+. |||+.+--+.. ..|.++++++++|||++.+ T Consensus 523 ~rv~DvlDVWFDSGs~~~a~~~-~-~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a-~~~~aPYk~vltHGfvlDe 598 (933) T COG0060 523 RRVPDVLDVWFDSGSTPYAVLH-P-RENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTA-LFGRAPYKNVLTHGFVLDE 598 (933) T ss_pred EECCCCEEEEECCCCCCCCCCC-C-CCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHHH-HCCCCHHHHHHHCCCEECC T ss_conf 9657546888737897111107-7-5444676555-757997066552268999999999-7288507877632617888 Q ss_pred -CCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC Q ss_conf -8601000002211100000022111211100002478730111222111001332110221021345565312332103 Q gi|255764461|r 300 -GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIP 378 (511) Q Consensus 300 -G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip 378 (511) |+|||||+||+|+|.+++++||||+||+|+++. +++.|+.||++.+.+ .++..++++| +.+|+..|.++.-| T Consensus 599 ~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ss-d~~~dl~~s~~il~~--~~~~~r~irN----t~rF~l~nl~~fdp 671 (933) T COG0060 599 KGRKMSKSLGNVVDPQDVIDKYGADILRLWVASS-DYWEDLRFSDEILKQ--VREVYRKIRN----TYRFLLGNLDDFDP 671 (933) T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCHHEEEEEEEC-CCHHCCCCCHHHHHH--HHHHHHHHHH----HHHHHHHHCCCCCC T ss_conf 8887655578818989998762763404665615-823032027889999--9999999999----99999885058994 Q ss_pred CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCC--CHHHCCCHH--HHHHH Q ss_conf 45-----55895565667899999999998775035899999999999--999788654187--012169999--99999 Q gi|255764461|r 379 TP-----GAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKP--WELKKTNPD--RASTV 447 (511) Q Consensus 379 ~~-----~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~P--W~l~k~d~~--~~~~v 447 (511) +. ..+...|+|++++++++.++++++|++|+|+++++.+++|+ +..|.|++..+. |.-+.++.+ .++++ T Consensus 672 ~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~ 751 (933) T COG0060 672 KKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTT 751 (933) T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 21335144423217999999999999999999846799999999999885665889888788764047999889999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCCC Q ss_conf 999999999999985432248999999984988--000795551012 Q gi|255764461|r 448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQR 492 (511) Q Consensus 448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~~ 492 (511) ||. ++..++++|+||+||+||+||+.|... .++....++.+. T Consensus 752 Ly~---il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~ 795 (933) T COG0060 752 LYH---ILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEV 795 (933) T ss_pred HHH---HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCC T ss_conf 999---99999999710103659999974766788753670357655 No 19 >cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Probab=100.00 E-value=0 Score=646.58 Aligned_cols=316 Identities=50% Similarity=0.931 Sum_probs=300.0 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 17997888999988322247897899999999885898036236437022799999998399989999999999999999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMAD 85 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 85 (511) ||+||+|||||||+||||||++++.+|+++||+|++||+|.||||+|+||+||+.+|+++|++|+|++++|+++|+++|+ T Consensus 1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~ 80 (319) T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFK 80 (319) T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 98996899878898553306889999999999996599569968777870899999998399879999999999999999 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCC Q ss_conf 80889886747788889999999988875431022110001011334301556672111222222223320000345443 Q gi|255764461|r 86 VLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGY 165 (511) Q Consensus 86 ~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~ 165 (511) +|||++|.|+||++++|.+.+++++++|.++|++|+++..++||+.|++|++ +++++.|| T Consensus 81 ~L~I~~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~--------------------e~~~~~~~ 140 (319) T cd00814 81 WLNISFDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------EWREEEHY 140 (319) T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCC--------------------EEEECCCE T ss_conf 8499878676678806899999999999978988884102636588764564--------------------66422637 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 44666444443444333321000676545775410345675323433377765786422214646024443220012346 Q gi|255764461|r 166 FFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYL 245 (511) Q Consensus 166 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~ 245 (511) ||+++++++.+.+++++++...+|...++...+|++++++||||||++..||+|+|++++|++||||||++||+++.+++ T Consensus 141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~ 220 (319) T cd00814 141 FFRLSKFQDKLLEWLEENPDFIWPENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYY 220 (319) T ss_pred EEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCC T ss_conf 87889978999999960987646805778887765437772001035554589888988854300210123400014666 Q ss_pred CCCCCCCCC---CCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCC Q ss_conf 765431000---24110000456432100010247765433101232333430330586010000022111000000221 Q gi|255764461|r 246 DNPDGSKAK---FWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGV 322 (511) Q Consensus 246 ~~~~~~~~~---~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~ 322 (511) ....+.... .++.++|++|+||++||+++|||++++.+.++|+++++||||+++|+|||||+||+|+++|++++||+ T Consensus 221 ~~~~~~~~~~~~~~~~~ih~~G~Di~~~H~~~~~a~~~a~~~~~~~~~~~~g~l~~~GeKMSKSlGN~i~~~dll~~~~~ 300 (319) T cd00814 221 TDEWGNSWWWNDPWPELVHFIGKDIVPFHAIYWPAMLLGAGLPLPTRIFAHGYLTVEGKKMSKSRGNVVDPDDLLERYGA 300 (319) T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEECCEECCCCCCCCCCHHHHHHHCCC T ss_conf 66568764445688412678447643188878999998569987868887023998994637729974459999987791 Q ss_pred CCCCHHHEEECCCCCCCEE Q ss_conf 1121110000247873011 Q gi|255764461|r 323 DALRYFLVREIACGKDGFY 341 (511) Q Consensus 323 D~lR~~l~~~~~~~~D~~F 341 (511) |++||||++.+|+++|.|| T Consensus 301 d~lR~~lls~~p~~~~~~F 319 (319) T cd00814 301 DALRYYLLRERPEGKDSDF 319 (319) T ss_pred HHEHHHHHCCCCCCCCCCC T ss_conf 3566877616888899999 No 20 >PRK00390 leuS leucyl-tRNA synthetase; Validated Probab=100.00 E-value=0 Score=629.13 Aligned_cols=452 Identities=24% Similarity=0.387 Sum_probs=338.0 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 88881799788899998832224789789999999988589803623643702279999999839998999999999999 Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) ++++|+||+.++|||||.|||||+++|+..|+++||+||+|++|+++.|||+||+|++..|.+.|++|++++.++.+.|+ T Consensus 29 ~~~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~GwD~~GLPaE~~aik~~~~p~~~t~~nI~~~k 108 (822) T PRK00390 29 DSKPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (822) T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 78998079377999898611325564789999999987189963898973668868989999949988999999999999 Q ss_pred HHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC Q ss_conf 999980889886--747788889999999988875431022110001011334301556672111222222223320000 Q gi|255764461|r 82 DMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW 159 (511) Q Consensus 82 ~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~ 159 (511) ++++++|+++|+ -..|++|++.+++|++|.+|+++|+||++..+++|||.|++.|++.+|..| .|+.|+.||+. T Consensus 109 ~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~~l~ekGliyr~~~~V~Wcp~~~T~LAn~eV~~G----~~~r~~~~V~~ 184 (822) T PRK00390 109 KQLKSLGFSYDWSREIATCDPEYYKWTQWLFLKLYEKGLAYRKESPVNWCPVDQTVLANEQVIDG----RSWRSGAPVEK 184 (822) T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHCCC----CCCCCCCEEEE T ss_conf 99998395430689877578779999999999999889979523242007976877650444147----64346870466 Q ss_pred CCCCCCCCCCCCCCCCCCCCCC----------------------------------------CCCCCC--------CHH- Q ss_conf 3454434466644444344433----------------------------------------332100--------067- Q gi|255764461|r 160 MEEEGYFFRLSAYQDKLLSYYE----------------------------------------SHPEFI--------LPI- 190 (511) Q Consensus 160 ~~~~~~f~~l~~~~~~l~~~~~----------------------------------------~~~~~~--------~p~- 190 (511) ++.++||+++++|+++|++-++ +.|..+ .|+ T Consensus 185 k~~~qw~~kit~Ya~~Ll~~l~~l~~wP~~vk~mQ~nWIG~s~g~~v~F~~~~~~~~l~v~TTrP~Tl~G~t~~~v~p~h 264 (822) T PRK00390 185 KELPQWFLKITDYADELLDDLDELDGWPEKVKTMQRNWIGRSEGAEVTFKVKGSDEKLEVFTTRPDTLFGATYLVLAPEH 264 (822) T ss_pred EECCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEECCHHHHCCCCEEEEECCC T ss_conf 30440355200758887502100246607776653043342000798633169985599996883352286279993797 Q ss_pred ---------------------------------------------------------------------------H---- Q ss_conf ---------------------------------------------------------------------------6---- Q gi|255764461|r 191 ---------------------------------------------------------------------------E---- 191 (511) Q Consensus 191 ---------------------------------------------------------------------------~---- 191 (511) + T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ek~G~~~G~~~~~P~~~~~iPI~~ad~V~~~~GTG~V~~~PaHd~~D 344 (822) T PRK00390 265 PLAEKLAEQNPAVAAFIEECKNKSDLERTLATKEKTGVFTGLYAIHPLTGEKIPVWIANYVLMDYGTGAVMAVPAHDQRD 344 (822) T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCEEECEECCCEEECCCCCCEEEEEEECCCCCCCCCCCEEECCCCCHHH T ss_conf 89999984489999999998712436665531501010058589777889655699625252457877267568788789 Q ss_pred -------------------------------------------HHHHHHHHCC-C---------CCCCCCCCCCCCCCCC Q ss_conf -------------------------------------------5457754103-4---------5675323433377765 Q gi|255764461|r 192 -------------------------------------------RRNEVISFVK-S---------GLKDLSLSRKTFDWGI 218 (511) Q Consensus 192 -------------------------------------------~~~~~~~wl~-~---------gl~Dw~ISR~~~~WGi 218 (511) +++.+.++|+ . -|+|||||||| |||+ T Consensus 345 ~~~a~k~~Lpi~~Vi~~~~~~~~~~~~G~lins~~~~Gl~~~eA~~~ii~~L~~~g~g~~~i~yrLRDW~iSRQR-yWG~ 423 (822) T PRK00390 345 FEFAKKYGLPIKQVIGGDVSEEAYTEDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQR-YWGE 423 (822) T ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEECCC-CCCC T ss_conf 999998299824763788766545577148763421786468899999999997799866341012663221120-2578 Q ss_pred CCCCC-----------------------------------------------------CCCCCCCCHHHHHHHHCC---C Q ss_conf 78642-----------------------------------------------------221464602444322001---2 Q gi|255764461|r 219 KIPDD-----------------------------------------------------PQYIMYVWIDALTNYLTT---T 242 (511) Q Consensus 219 piP~~-----------------------------------------------------~~~~~YVWfDa~~gY~s~---~ 242 (511) |||-. +..|+.||||+.+ |... . T Consensus 424 PIPi~~c~~~~~v~v~e~~Lpv~LPe~~~~~~~g~~PL~~~~~w~~~~c~~~g~~~~RetDt~DtW~dSsW-Y~~ry~~p 502 (822) T PRK00390 424 PIPIIHCEDCGVVPVPEDDLPVVLPEDVVPDGTGESPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSW-YYLRYTDP 502 (822) T ss_pred CEEEEEECCCCEEEEEHHHCCCCCHHHEECCCCCCCHHHHCCCCEEEECCCCCCCCEECCCCCCEEECCCC-EEEECCCC T ss_conf 40389957897787107875534600130068899946847001752147778721453531020113544-00001577 Q ss_pred C---CCCCCCCCCCCCCCCCHHCCCCCCCCHHC---CHHHHHHHHHHH----HCCCCCCCCCCEEE-------------- Q ss_conf 3---46765431000241100004564321000---102477654331----01232333430330-------------- Q gi|255764461|r 243 G---YLDNPDGSKAKFWPADLHVIGKDILRFHA---IYWPAFLLSANL----PLPKKVFSHGFILH-------------- 298 (511) Q Consensus 243 ~---~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~---i~~pa~l~~~~~----~~p~~i~~~g~l~~-------------- 298 (511) + ...+ ...+..|+|.|.+..|.+-.--|- -+|-..|..+|. .+++++++||||+. T Consensus 503 ~~~~~~~d-~~~~~yw~PvD~YigG~EHailHLlYsRF~~~~l~dlg~~~~~ePF~~l~~qGmVl~~~~~~~~~~~~~~~ 581 (822) T PRK00390 503 HNDEAMFD-KEAANYWLPVDQYIGGIEHAVLHLLYARFFHKVLRDLGLVSSDEPFKKLLTQGMVLGETYYDERGNWVSPA 581 (822) T ss_pred CCCCCCCC-HHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCEEECCCCCCCCCCCCCHH T ss_conf 64446679-77886028961401644566778888889999998716755677757750445684254444567766601 Q ss_pred -----------CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHH Q ss_conf -----------586010000022111000000221112111000024787301112221110013321102210213455 Q gi|255764461|r 299 -----------KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS 367 (511) Q Consensus 299 -----------~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~ 367 (511) +|+|||||+||+|+|.+++++||||++|+|+++.+|+.+|.+|+.+++....+ ++++++|++.. T Consensus 582 ~v~~~~~~~~~~g~KMSKSkGNvv~P~~ii~~yGADalRl~~l~~ap~~~d~~ws~~~i~g~~r--fl~rlw~~~~~--- 656 (822) T PRK00390 582 DVEVERDEKRIGGIKMSKSKGNVVDPDDIIDKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYR--FLQRVWRLVYD--- 656 (822) T ss_pred HEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHC--- T ss_conf 1242045567677616765789689899987548079999999608856661204878999999--99999997304--- Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH Q ss_conf 65312332103455589556566789999999999877503589999999999999978865418701216999999999 Q gi|255764461|r 368 MILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTV 447 (511) Q Consensus 368 f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~v 447 (511) .........|+++++++++++++++++||+|+|+.|++.+|+|++...++ ....+ T Consensus 657 ----------~~~~~~~~~d~~l~~~l~~~I~~vt~~~e~~~fn~ai~~l~~f~N~l~k~---------------~~~~~ 711 (822) T PRK00390 657 ----------EGAVAALEADKELRRALHKTIKKVTEDIERLRFNTAIAALMELVNALSKA---------------PDRAV 711 (822) T ss_pred ----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---------------HHHHH T ss_conf ----------44556872319999999999999999997667769999999999999872---------------51899 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC--CCCHHHHCCCC Q ss_conf 99999999999998543224899999998498800--07955510126 Q gi|255764461|r 448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE--NRCFQSLDQRL 493 (511) Q Consensus 448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~--~~~~~~~~~~l 493 (511) ++ +++..+++||+||+||+|||||+.||.+.. ...|+..++.+ T Consensus 712 l~---~~l~~l~rlLaPf~PhiaEElW~~Lg~~~sV~~~~WP~~de~~ 756 (822) T PRK00390 712 LR---EALEILVRLLAPFAPHIAEELWQELGHEGSIANAPWPEVDEAA 756 (822) T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH T ss_conf 99---9999999999878899999999977999856458999678788 No 21 >TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=100.00 E-value=0 Score=617.99 Aligned_cols=475 Identities=23% Similarity=0.380 Sum_probs=373.2 Q ss_pred CCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 9888817997888999988-322247897899999999885898036236437022799999998399989999999999 Q gi|255764461|r 1 MKEREKLYISTAIAYPNAQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRN 79 (511) Q Consensus 1 m~~~~~~~vt~~~Py~ng~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~ 79 (511) +++++||||-+..|||+|. |||||.|+|+.+||++||+||+||+|+++.|||.+|+|.|..|.+.|+.|..+++++.+. T Consensus 27 i~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDAFGLPAEnaAI~~~~~P~~WT~~NI~~ 106 (916) T TIGR00396 27 ISNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIAN 106 (916) T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH T ss_conf 45578646623787956077501651423576499999986288324766757456425899986489870037899999 Q ss_pred HHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCC-CCCCCCCCC Q ss_conf 99999980889886--747788889999999988875431022110001011334301556672111222-222223320 Q gi|255764461|r 80 FRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADG-QYYNAQHNP 156 (511) Q Consensus 80 ~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~-~~~~~~~~p 156 (511) |+++++.||.+||+ -.+|++|+|++++|+||.+|+++|++|+++..++|||.++|-||..+|.-.++| .+|++|+.+ T Consensus 107 m~~Ql~~LGf~yDw~RE~~T~~P~YYkwtQWiF~~Lf~kGLaY~ke~~VNWCP~d~TVLANEqVi~DS~Gna~SwR~~~~ 186 (916) T TIGR00396 107 MKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEATVNWCPNDGTVLANEQVIIDSDGNARSWRGGTP 186 (916) T ss_pred HHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHEEECCCCCCEEECCCCC T ss_conf 99999984556441105323888743366688899976285276311133067778451020301227898532248784 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CC------------------------------- Q ss_conf 000345443446664444434443333210006765457754103--45------------------------------- Q gi|255764461|r 157 VQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK--SG------------------------------- 203 (511) Q Consensus 157 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~--~g------------------------------- 203 (511) ||.++.+|||+++++|+|+|++-+++-++. ||+.+|..=.||+- .| T Consensus 187 Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~-WP~~VK~MQrNWIGkS~Gv~~~F~i~d~clkacn~~e~i~VFTTRPdT~ 265 (916) T TIGR00396 187 VEKKELKQWFLKITAYAEELLNDLEELDDH-WPESVKEMQRNWIGKSEGVEITFKIADHCLKACNKKEKIAVFTTRPDTI 265 (916) T ss_pred EEEEECCCCEEHHHHHHHHHHHHHHCCCCC-CCHHHHHCCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEEEEECCCCCE T ss_conf 466306751011337889854114204678-8731364045456555204899742573121037875169986686301 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 204 -------------------------------------------------------------------------------- 203 (511) Q Consensus 204 -------------------------------------------------------------------------------- 203 (511) T Consensus 266 fGvtYlalA~~HpLv~~~~~~~~~~~v~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~AihPlT~e~iPiwvAnYVl~~YG 345 (916) T TIGR00396 266 FGVTYLALAPEHPLVEKIAKNNPKEEVAAFIKKIAQKSDLERTKETKEKKGVFTGIYAIHPLTGEKIPIWVANYVLASYG 345 (916) T ss_pred EEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEECEEECCCC T ss_conf 00265766157858999974084678999999987307055556642014646686363476776445576330011578 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 204 -------------------------------------------------------------------------------- 203 (511) Q Consensus 204 -------------------------------------------------------------------------------- 203 (511) T Consensus 346 TgPsAVMGVPaHDeRDF~FA~~~~Lpi~~Vi~~~~~~~~~~~~~~A~t~~g~~~ns~tstdGvltkeC~~f~Gl~~~~A~ 425 (916) T TIGR00396 346 TGPSAVMGVPAHDERDFEFAQKYKLPIKVVIDPADADGKNLKLEQAYTEDGVLVNSSTSTDGVLTKECGEFNGLNSSEAK 425 (916) T ss_pred CCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCHHHH T ss_conf 98502035888874127999857897158752777667511566767646522168765344101000222377617899 Q ss_pred --------------------CCCCCCCCCCCCCCCCCCC----------------------------------------- Q ss_conf --------------------6753234333777657864----------------------------------------- Q gi|255764461|r 204 --------------------LKDLSLSRKTFDWGIKIPD----------------------------------------- 222 (511) Q Consensus 204 --------------------l~Dw~ISR~~~~WGipiP~----------------------------------------- 222 (511) |+||-||||| |||-|||- T Consensus 426 ~~I~~~L~~~~~gk~~v~YrLRDW~~SRQR-YWG~PIPiih~e~g~~~P~~~~dLPv~LP~~~~~~~~G~~~sPL~~~~~ 504 (916) T TIGR00396 426 EAIIKMLEKEGKGKRKVNYRLRDWLFSRQR-YWGEPIPIIHCEDGGAVPVPEEDLPVKLPELVNYDGSGTGESPLSRIKE 504 (916) T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCEEEEC-CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC T ss_conf 999999986388502123465325344000-2688987788067684244344687107500235788898880430746 Q ss_pred --------------CCCCCCCCCHHHHH---HHHCCCCCC----CC---CCCCCCCCCCCCHHCCCCCCCCHHCC---HH Q ss_conf --------------22214646024443---220012346----76---54310002411000045643210001---02 Q gi|255764461|r 223 --------------DPQYIMYVWIDALT---NYLTTTGYL----DN---PDGSKAKFWPADLHVIGKDILRFHAI---YW 275 (511) Q Consensus 223 --------------~~~~~~YVWfDa~~---gY~s~~~~~----~~---~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~ 275 (511) .|--|+..|.|+.. +|+.-.++- .+ +....++|-|.|+++.|-+=.--|-| || T Consensus 505 W~~v~~~~~~~~A~RETdTMdtf~~SsWYylRY~~p~~n~~FWPi~~~~d~e~~~~wlPVD~YiGG~EHAiLHLLY~RF~ 584 (916) T TIGR00396 505 WVNVTCPSCGKPALRETDTMDTFIGSSWYYLRYLDPKNNTNFWPIDQPFDKEKAEYWLPVDLYIGGIEHAILHLLYARFF 584 (916) T ss_pred CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHH T ss_conf 32414788798754337876305777899986035001766687321302788975588441026268998998888999 Q ss_pred HHHHHHH-------HH-HCCCCCCCCCCEEE--------CCC------------------------------------CC Q ss_conf 4776543-------31-01232333430330--------586------------------------------------01 Q gi|255764461|r 276 PAFLLSA-------NL-PLPKKVFSHGFILH--------KGE------------------------------------KI 303 (511) Q Consensus 276 pa~l~~~-------~~-~~p~~i~~~g~l~~--------~G~------------------------------------KM 303 (511) -=+|... |+ .|++.+++.|||+- +|+ || T Consensus 585 hK~L~D~g~v~~PaGi~EPFkKL~~QGMVlg~~f~y~~~~g~~~W~~p~d~~~~~d~~~d~~~~~d~~~~~~~~~~~~KM 664 (916) T TIGR00396 585 HKFLYDLGLVSTPAGIKEPFKKLINQGMVLGDAFYYKKPNGKRIWVVPADELIERDEKGDIKKAKDKSGGELVVVGYEKM 664 (916) T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHCCEEECCCEEECCCCCCEEEEECCCCEEECCCCCCCCCCEECCCCCEEEEEEEEE T ss_conf 99997457615877665714554200002116134138997367764575166104667865423258882478877762 Q ss_pred CHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHH-CC---CCCCCC Q ss_conf 00000221110000002211121110000247873011122211100133211022102134556531-23---321034 Q gi|255764461|r 304 SKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILK-DY---DGMIPT 379 (511) Q Consensus 304 SKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k-~~---~g~ip~ 379 (511) ||||||+|+|.+++++||||++|+|+|..+|...++.++++++....+ +.++++||+.....-... .+ ....-. T Consensus 665 SKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P~~~~L~W~~~g~~G~~R--FL~RVw~l~~~~~~~~~~~~~avrP~~~~~ 742 (916) T TIGR00396 665 SKSKGNGIDPQEIVKKYGADALRLFIMFMGPIAASLEWNESGLEGARR--FLDRVWNLVKEILGELSGIISAVRPKTELT 742 (916) T ss_pred CCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHCCCHHHEEEEECCCCCCC T ss_conf 023679887038974048027999997048831414777111013568--889999999873266000255424610034 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 555895565667899999999998775035--899999999999999788654187012169999999999999999999 Q gi|255764461|r 380 PGAFTESDESILSVCSRVLQEIRENMQNQL--IHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQ 457 (511) Q Consensus 380 ~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~--~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~ 457 (511) ...++..++.+...++++++++++.+|..+ |+.|+.++|.|++.+-+.- .+.+ ... +.++.+.. T Consensus 743 ~~~l~~~~~~~~~~~~~~lk~v~e~~~~~~~~fNT~IS~~M~l~N~L~k~~----------~~ge-~~~---~~~e~~~~ 808 (916) T TIGR00396 743 ETALEEAQKELRREVHKFLKKVTEDLEKLELSFNTAISAMMELLNALYKAT----------KDGE-DRA---LYLEYLKG 808 (916) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC----------CCCH-HHH---HHHHHHHH T ss_conf 311230468999999999988875317620135589999999999987310----------2341-158---89999998 Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCC---CCCCHHHHCCCC Q ss_conf 999854322489999999849880---007955510126 Q gi|255764461|r 458 LAILLQAFVPKLANKIFDILFVAD---ENRCFQSLDQRL 493 (511) Q Consensus 458 l~ilL~Pi~P~~ae~i~~~Lg~~~---~~~~~~~~~~~l 493 (511) +..+|+||+||+|||+|+.||... ++..|+.+|+.. T Consensus 809 ~~~~L~P~aPhlaeELwe~lg~~~~~~~~~~w~~~D~~~ 847 (916) T TIGR00396 809 LVTVLSPFAPHLAEELWEKLGSEPSIIKQAKWPKVDETA 847 (916) T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHCHHH T ss_conf 998851520168999999857770015441120212465 No 22 >cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Probab=100.00 E-value=0 Score=620.45 Aligned_cols=303 Identities=27% Similarity=0.464 Sum_probs=269.9 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCC--------------- Q ss_conf 8179978889999883222478978999999998858980362364370227999999983-999--------------- Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVT--------------- 68 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~--------------- 68 (511) |+|+||||+|||||+||||||++++++|+++||+||+|++|+|+||+|+||+||+.+|+++ ++. T Consensus 1 k~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek~~~~~~~~~~~~~~~~f~~~ 80 (363) T cd00817 1 EPFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (363) T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHH T ss_conf 98599489998888613527898999999999998169977887845756689999999983605665000798999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC Q ss_conf 899999999999999998088988--674778888999999998887543102211000101133430155667211122 Q gi|255764461|r 69 TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD 146 (511) Q Consensus 69 p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~ 146 (511) +.++++++++.++++++++|+++| .|+||++++|++.+|++|.+|+++|+||++.+++.| T Consensus 81 ~~~~~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~------------------ 142 (363) T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNW------------------ 142 (363) T ss_pred HHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECC------------------ T ss_conf 99999999999999999833011657503437767999999999999988897636824573------------------ Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--- Q ss_conf 22222233200003454434466644444344433332100067654577541034567532343337776578642--- Q gi|255764461|r 147 GQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD--- 223 (511) Q Consensus 147 ~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~--- 223 (511) |+|...++||||+++++++++++++++++..+.|+.+++++.+|+++ |+|||||||+ +||+|||.. T Consensus 143 ---------~ve~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~ISR~~-~WG~piP~~~~~ 211 (363) T cd00817 143 ---------VIEPLLKPQWFVKVKDLAKAALEAVKEGDIKFVPERMEKRYEDWLEN-IRDWCISRQL-WWGHRIPAWYCE 211 (363) T ss_pred ---------EEEEEECCEEEEECHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHC-CCCCCCCHHC-CCCCCCCEEECC T ss_conf ---------77998776168987788999999996299778578999999999851-5765331000-136666614627 Q ss_pred ---------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCH Q ss_conf ---------------------------------22146460244432200123467654310002411000045643210 Q gi|255764461|r 224 ---------------------------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRF 270 (511) Q Consensus 224 ---------------------------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~F 270 (511) +..|+||||||+++|+++.+|+.+ ...++.+||+++|++||||++| T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~dvWfds~~~~~~~~~~~~~-~~~~~~~~p~d~~~~GkDIirf 290 (363) T cd00817 212 DCGHWVVAREEEEAVDPAIPEACCPCGSEELEQDTDVLDTWFSSSLWPFSTLGWPEE-TKDLKKFYPTSLLPTGHDIIFF 290 (363) T ss_pred CCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCC-CCHHHHCCCCCEEEEEEHHHHH T ss_conf 898477067336411124320478887211303677653044524772255089743-3145407876378762388746 Q ss_pred HCCHHHHHHHHHHH----HCC-CCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE Q ss_conf 00102477654331----012-3233343033-05860100000221110000002211121110000247873011 Q gi|255764461|r 271 HAIYWPAFLLSANL----PLP-KKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY 341 (511) Q Consensus 271 h~i~~pa~l~~~~~----~~p-~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511) ||+++++.+. ++| ++|++|||++ .+|+|||||+||+|+|.+++++||+|++||||++.+|.++|+|| T Consensus 291 ----W~~~~~~~~~~l~~~~P~~~v~~HG~vl~~~G~KMSKS~GNvv~p~~~l~~yg~D~lRy~l~~~~~~~~D~~~ 363 (363) T cd00817 291 ----WVARMIMRGLELTGKLPFKEVYIHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAASQGRDINL 363 (363) T ss_pred ----HHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC T ss_conf ----9999999876624898865668786289999887578899866989999877927999999952998777898 No 23 >cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Probab=100.00 E-value=0 Score=606.37 Aligned_cols=304 Identities=27% Similarity=0.451 Sum_probs=265.6 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCH-------------- Q ss_conf 8179978889999883222478978999999998858980362364370227999999983-9998-------------- Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTT-------------- 69 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p-------------- 69 (511) ++|+|++|||||||+||||||++++++|+++||+||+|++|+|+||+|+||+||+++|+++ |+++ T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339) T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339) T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999 Q ss_pred --HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC Q ss_conf --99999999999999998088988--67477888899999999888754310221100010113343015566721112 Q gi|255764461|r 70 --KVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA 145 (511) Q Consensus 70 --~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~ 145 (511) +++++++.+.++++++++|+..| ...+|++++|.+.++++|++|+++|+||++..+++| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~----------------- 143 (339) T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW----------------- 143 (339) T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC----------------- T ss_conf 999999999999999999837351477771216889999999999999988886267605368----------------- Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-- Q ss_conf 22222223320000345443446664444434443333210006765-457754103456753234333777657864-- Q gi|255764461|r 146 DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIER-RNEVISFVKSGLKDLSLSRKTFDWGIKIPD-- 222 (511) Q Consensus 146 ~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~-- 222 (511) |+++++++||||++++++++|++++++. .++ |+.. ..++.+|+++ |+||||||++ +||||||. T Consensus 144 ----------p~~~~~~~~~F~~l~~~~~~ll~~~~~~-~~~-p~~~~~~~l~~~~~~-l~Dw~ISR~~-~WGipvP~w~ 209 (339) T cd00818 144 ----------PLIYRATPQWFIRVEKLKDRLLEANDKV-NWI-PEWVKEGRFGNWLEN-RRDWCISRQR-YWGTPIPVWY 209 (339) T ss_pred ----------CCCCEECCCEEEECHHHHHHHHHHHHCC-CEE-CCHHHHHHHHHHHHC-CCCCEEEECC-CCCCCCCEEE T ss_conf ----------7600581567998689999999877538-737-861066499999716-8565044026-6675346356 Q ss_pred --CC--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCC Q ss_conf --22--------214646024443220012346765431000241100004564321--000102477654331012323 Q gi|255764461|r 223 --DP--------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKV 290 (511) Q Consensus 223 --~~--------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i 290 (511) +. .+|+||||||+++|++..++..+ +..+.++||.++|++||||++ ||+++|||+++. +..++++| T Consensus 210 ~~~~~~~~~~~~~dv~yVWfDa~~~~~~~~~~~~~-~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~-~~~P~~~v 287 (339) T cd00818 210 SEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFE-NEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF-GKAPYKNV 287 (339) T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCC-CHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCCEE T ss_conf 48998321003650177776356248987289864-31341387660566063312337999999878854-89985214 Q ss_pred CCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE Q ss_conf 3343033-05860100000221110000002211121110000247873011 Q gi|255764461|r 291 FSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY 341 (511) Q Consensus 291 ~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511) ++|||++ .+|+|||||+||+|+|.|++++||+|++||||++.+|+++|++| T Consensus 288 ~~hg~~l~~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F 339 (339) T cd00818 288 IVHGFVLDEDGRKMSKSLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF 339 (339) T ss_pred EECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC T ss_conf 8898499999866278899878989999876947999999916888889999 No 24 >PRK12300 leuS leucyl-tRNA synthetase; Reviewed Probab=100.00 E-value=0 Score=585.47 Aligned_cols=441 Identities=24% Similarity=0.354 Sum_probs=320.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC---------------C---------CCHHHHHHH Q ss_conf 3222478978999999998858980362364370227999999983---------------9---------998999999 Q gi|255764461|r 20 PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA---------------G---------VTTKVFVDQ 75 (511) Q Consensus 20 lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~---------------g---------~~p~e~~~~ 75 (511) |||||+++|+..|+++||+||+|++|+|+.|||+||+||+..|++. | .+|+.++++ T Consensus 1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~~~ 80 (888) T PRK12300 1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAERIAEGDPETIDIYRNLYGIPEEEIEKFKDPEYIVEY 80 (888) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 94055478799999999998079977999988889953899999986044468999877513668888875009999999 Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCC----- Q ss_conf 999999999980889886--7477888899999999888754310221100010113343015566721112222----- Q gi|255764461|r 76 NSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQ----- 148 (511) Q Consensus 76 ~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~----- 148 (511) +.+.++++++++|+++|+ -..|++|++.+++|++|.+|+++|+||++..+++|||.|++.+++.++..+.... T Consensus 81 ~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP~~~T~la~~ev~~~~~~~~~~~~ 160 (888) T PRK12300 81 FSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCPKDENPVGDHDTKDGEEPTIGEYT 160 (888) T ss_pred HHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCCHHHCCCCCCEEEEE T ss_conf 99999999998386063699866488879999999999999779949787786725987848222055508775516899 Q ss_pred ----------------------------------C--------------------------------------------- Q ss_conf ----------------------------------2--------------------------------------------- Q gi|255764461|r 149 ----------------------------------Y--------------------------------------------- 149 (511) Q Consensus 149 ----------------------------------~--------------------------------------------- 149 (511) + T Consensus 161 ~ikf~~~~~~l~v~TTrPeTl~g~ta~~v~Pd~~Yv~~~~~~e~~i~~~~~~~~l~~~~~~~~~~~~~~g~~l~G~~~~~ 240 (888) T PRK12300 161 LIKFEGDDLILPAATLRPETVFGVTNLWVNPDAEYVVAEVDGEKWIVSKEAARKLSFQDREVEIIEEIKGSELIGKKVKN 240 (888) T ss_pred EEEECCCCEEEEEEECCHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCEECCEEEEC T ss_conf 99971798279997268025430000377776323456427720089999999986222113675320263303508986 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 150 -------------------------------------------------------------------------------- 149 (511) Q Consensus 150 -------------------------------------------------------------------------------- 149 (511) T Consensus 241 P~~~~~ipI~~ad~V~~~~GTG~V~~vPaHd~~Dy~~~~~~~~~~~~~i~ii~v~~~g~~p~~~~~~~~~i~~~~d~~l~ 320 (888) T PRK12300 241 PVTGKEVPILPAKFVDPDNGTGVVMSVPAHAPYDYVALRDLDVEEIELIPLIKVEGYGEFPAKEIVEKMGIKSQKDPELE 320 (888) T ss_pred CCCCCEEEEEECCEECCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHH T ss_conf 78898735986140747889772896578987789999860724246777232056677527777775077664423477 Q ss_pred --------------------------------------------------------CCCCCCCEECC-CCCCCCCCCC-- Q ss_conf --------------------------------------------------------22233200003-4544344666-- Q gi|255764461|r 150 --------------------------------------------------------YNAQHNPVQWM-EEEGYFFRLS-- 170 (511) Q Consensus 150 --------------------------------------------------------~~~~~~p~~~~-~~~~~f~~l~-- 170 (511) |+.||+|+... .+.|||++++ T Consensus 321 ~a~~~~y~~e~~~G~l~~~~~~~~G~~v~eA~~~i~~~L~~~g~~~~~y~~~~~~v~~R~g~~~v~~~~~dQWFi~~~~~ 400 (888) T PRK12300 321 EATKELYKAEFHKGVLREDTGEYAGKPVREAREKITEDLIESGIAEIMYEFSEKPVYCRCGTECVVKVVKDQWFIDYSNP 400 (888) T ss_pred HHHHHHHHHHHCCCEECCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCH T ss_conf 77665422231175341565110697999999999999997799740303577886789998676341687641047876 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHC-------- Q ss_conf 444443444333321000676545775410345675323433377765786422214646024443--2200-------- Q gi|255764461|r 171 AYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALT--NYLT-------- 240 (511) Q Consensus 171 ~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~--gY~s-------- 240 (511) .+++...+.++. .. +.|...++.+.+|+++ ++|||||||| +||+|||+++++++..--|+.+ .|.+ T Consensus 401 ~~k~~~~~~~~~-i~-~~P~~~~~~~~~~l~~-l~DW~iSRqr-~wGtpiPwd~~~~iesl~dstiy~~~yt~~~~~~~~ 476 (888) T PRK12300 401 EWKELAHKCLDR-MR-IIPEEARAEFENKIDW-LKDRACARRR-GLGTPLPWDERWVIESLSDSTIYMAYYTIAKKIRQY 476 (888) T ss_pred HHHHHHHHHHCC-CE-EECCHHHHHHHHHHHC-CCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC T ss_conf 778999987616-65-6572134557877614-6886545666-769788704882342277764001024687876334 Q ss_pred ---------------------------CCCCCC----CCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHH----HHHH Q ss_conf ---------------------------123467----65431000241100004564321000102477654----3310 Q gi|255764461|r 241 ---------------------------TTGYLD----NPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLS----ANLP 285 (511) Q Consensus 241 ---------------------------~~~~~~----~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~----~~~~ 285 (511) ..+... +....+..|+|.|+++.|+|++..|-.++ ++.. .... T Consensus 477 ~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~wyP~D~~~~G~D~i~~hl~f~--~~~~~aif~~~~ 554 (888) T PRK12300 477 GLDPEQLTPEFFDYVFLGKGDPEEISKKTGIPKEILEEMREEFEYWYPLDWRHSGKDLIPNHLTFF--IFNHVAIFPEEK 554 (888) T ss_pred CCCHHHCCCHHCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCEECCCCCCCCCEEHHHHHHHHH--HHHHHHHHCCCC T ss_conf 899567581013043148997666666519988899986886464267601435310335679999--988688717777 Q ss_pred CCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHH Q ss_conf 12323334303305860100000221110000002211121110000247873011122211100133211022102134 Q gi|255764461|r 286 LPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRS 365 (511) Q Consensus 286 ~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~ 365 (511) +|+++++|||++.+|+|||||+||+|+|.+++++||||++|+|+++.+++++|.+|+.+.+....+ +.++++|++... T Consensus 555 ~pk~v~~~G~Vl~eG~KMSKSkGNvV~P~eiI~~YGADalRl~l~~~a~~~~d~~~~~~~v~~~~~--~l~~~~~~~~~~ 632 (888) T PRK12300 555 WPRGIVVNGFVLLEGKKMSKSKGNVLPLREAIEEYGADVVRLYLASTAELSQDADFREKEAESIRR--QLERFYELAVEL 632 (888) T ss_pred CCCEEEEEEEEECCCEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHH T ss_conf 887579832894598770303489899899997619629999999718855686457999999999--999999999976 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCHHHCCCHHHH Q ss_conf 55653123321034555895565667899999999998775035899999999-99999978865418701216999999 Q gi|255764461|r 366 VSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVI-SLVSEVDRYFDAQKPWELKKTNPDRA 444 (511) Q Consensus 366 ~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~-~l~~~~N~yi~~~~PW~l~k~d~~~~ 444 (511) . +. .....++..|+|+++++++++++++++||+|+|++|++.++ .+.+.+|+|++..+. .. T Consensus 633 ~--------~~-~~~~~~~~~D~wils~l~~~i~~v~~~~e~~~f~~a~~~~~~~~~~~~~~Y~~~~~~---------~~ 694 (888) T PRK12300 633 A--------EE-ESEEELRFIDKWLLSRLYSYIKEVTEAMEEFQTRKAIQEIFYNLLNDLRWYLRRGGE---------PN 694 (888) T ss_pred H--------CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC---------HH T ss_conf 3--------26-777677667899999999999999999984459999999999999999999987371---------88 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHC Q ss_conf 9999999999999999854322489999999849880007955510 Q gi|255764461|r 445 STVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLD 490 (511) Q Consensus 445 ~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~ 490 (511) ..+|+ +++..+++||+||+||+||+||+.||-++ +.+...++ T Consensus 695 ~~~l~---~~l~~~~~LLaP~~PhiaEElW~~Lg~~~-sV~~a~wP 736 (888) T PRK12300 695 NKVLR---EVIEIWIRLLAPFTPHLAEEIWEKLGGEG-FVSLAPWP 736 (888) T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEECCCC T ss_conf 99999---99999999960410488999999679998-37707999 No 25 >cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Probab=100.00 E-value=0 Score=587.60 Aligned_cols=316 Identities=24% Similarity=0.334 Sum_probs=253.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC------------------ Q ss_conf 17997888999988322247897899999999885898036236437022799999998399------------------ Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV------------------ 67 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~------------------ 67 (511) ||+||||+|||||+||||||++++++||++||+||+|++|+|+||+|+||+||+++|+++|+ T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~ 80 (376) T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE 80 (376) T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH T ss_conf 97998589888974546886989999999999995599704688456567899999999687477653011110001887 Q ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHH Q ss_conf -----9899999999999999998088988--674778888999999998887543102211000101133430155667 Q gi|255764461|r 68 -----TTKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDE 140 (511) Q Consensus 68 -----~p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~ 140 (511) +|+++++++.+.++++++++||++| .+.+|++++|.+.||++|.+|+++|+||+++.+++||+.|++++.+-. T Consensus 81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~f~~~~ 160 (376) T cd00812 81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQWFLKYS 160 (376) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEECCC T ss_conf 86127999999999999999999809873768664337778999999999999988988951755536467760574166 Q ss_pred HCCCCCCCCCCCCCCCEE-----CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC- Q ss_conf 211122222222332000-----034-5443446664444434443333210006765457754103456753234333- Q gi|255764461|r 141 VYKGADGQYYNAQHNPVQ-----WME-EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKT- 213 (511) Q Consensus 141 v~~~~~~~~~~~~~~p~~-----~~~-~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~- 213 (511) .. .++.|..|..+++ .+. .++|+.++. ++..+... ... .....|+||+|||++ T Consensus 161 ~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~------~~~----~~~~~l~dw~isr~~~ 220 (376) T cd00812 161 TE---WAERLLKDLEGLDTWPEEVKNMQENWIGWLK-------GWACARRY------GLG----TVLPWDRDWLIERLRD 220 (376) T ss_pred HH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-------CCEEEEEC------CCC----CCCCCCCCCCCCCCCC T ss_conf 78---8999874042046786889999999873024-------65254111------115----4065554434134445 Q ss_pred --CCCCCCCCC------------------CCCCCCCCCHHHHHHHHCCCCCCCC----CCCCCCCCCCCCHHCCCCCCCC Q ss_conf --777657864------------------2221464602444322001234676----5431000241100004564321 Q gi|255764461|r 214 --FDWGIKIPD------------------DPQYIMYVWIDALTNYLTTTGYLDN----PDGSKAKFWPADLHVIGKDILR 269 (511) Q Consensus 214 --~~WGipiP~------------------~~~~~~YVWfDa~~gY~s~~~~~~~----~~~~~~~~w~~d~~~~G~Dii~ 269 (511) ++||+|||. .+++++++|||++++|++....... ....+..|||.|+|++||||++ T Consensus 221 ~~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~ 300 (376) T cd00812 221 STIYWGYYTPAHHCEKCGPVCPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAV 300 (376) T ss_pred CCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCC T ss_conf 66667700215975678641466675556654468865776301466678433447668799984288606881335420 Q ss_pred HH---CCHHHHHHHHHHH-HCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE Q ss_conf 00---0102477654331-012323334303305860100000221110000002211121110000247873011 Q gi|255764461|r 270 FH---AIYWPAFLLSANL-PLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY 341 (511) Q Consensus 270 Fh---~i~~pa~l~~~~~-~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511) || +++||++|++++. .+|++|++||||+++|+||||||||+|+|.|+|++||+|++||||++.+|+++|++| T Consensus 301 fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~~~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F 376 (376) T cd00812 301 NHLLYSRFNHKALFDEGTKEPPKGLRVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW 376 (376) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC T ss_conf 1367999999999864677798266875729669966377899884989999885954999999944995568998 No 26 >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=100.00 E-value=0 Score=573.78 Aligned_cols=455 Identities=24% Similarity=0.389 Sum_probs=335.7 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 81799788899998832224789789999999988589803623643702279999999839998999999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA 84 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 84 (511) +|||||.+.|||||.||+||.++|+.+||++||+||+||+|+|+.|+|.+|+|++..|.+.|.+|+.+++++.+.+++++ T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql 113 (814) T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL 113 (814) T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 75599867878888734685412108999999998569721456755666863999999857896999999999999999 Q ss_pred HHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCC Q ss_conf 980889886747---78888999999998887543102211000101133430155667211122222222332000034 Q gi|255764461|r 85 DVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWME 161 (511) Q Consensus 85 ~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~ 161 (511) +.+|.|+| |.| |+||+|++++|++|.+|+++|++|++++++.|||.|++-+++.+|..|+ |..||.||+.++ T Consensus 114 k~lG~siD-W~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~----~~r~~~~V~~ke 188 (814) T COG0495 114 KSLGFSID-WRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGG----CWRCGEPVEIKE 188 (814) T ss_pred HHHCCCCC-CCCCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCCCCCEEECCC----CCCCCCCEEEEE T ss_conf 98087612-3554564796477999999999997798885255431077769761541241587----655788526866 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---------------------------------------- Q ss_conf 5443446664444434443333210006765457754103---------------------------------------- Q gi|255764461|r 162 EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK---------------------------------------- 201 (511) Q Consensus 162 ~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~---------------------------------------- 201 (511) -.+|||++++|++.|++-+..-. ..+|+.++....+|+. T Consensus 189 l~qw~~kit~yae~ll~~l~~l~-~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~ 267 (814) T COG0495 189 LTQWFFKITDYADELLDDLDKLA-TLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAP 267 (814) T ss_pred EEEEEEEECHHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEEC T ss_conf 68999991342999986666542-47956699898727078887589985177644100244663573116748999707 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 202 -------------------------------------------------------------------------------- 201 (511) Q Consensus 202 -------------------------------------------------------------------------------- 201 (511) T Consensus 268 ~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpah 347 (814) T COG0495 268 EHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAH 347 (814) T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCC T ss_conf 86678987418651669999988617871563045687763113650247777886778996743145556635458888 Q ss_pred ---------------------------------------------------------------------CCCCCCCCCCC Q ss_conf ---------------------------------------------------------------------45675323433 Q gi|255764461|r 202 ---------------------------------------------------------------------SGLKDLSLSRK 212 (511) Q Consensus 202 ---------------------------------------------------------------------~gl~Dw~ISR~ 212 (511) =.|+||.+||| T Consensus 348 d~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srq 427 (814) T COG0495 348 DERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQ 427 (814) T ss_pred CCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH T ss_conf 70206899852886179982488766400114745762543367640567999998688723782588514515778999 Q ss_pred CCCCCCCCCCC-----------------------------------C--------CCC-------CCCCHHHHHHHHCCC Q ss_conf 37776578642-----------------------------------2--------214-------646024443220012 Q gi|255764461|r 213 TFDWGIKIPDD-----------------------------------P--------QYI-------MYVWIDALTNYLTTT 242 (511) Q Consensus 213 ~~~WGipiP~~-----------------------------------~--------~~~-------~YVWfDa~~gY~s~~ 242 (511) | |||.|||-- + +.+ +..|+++..=|.-.. T Consensus 428 R-ywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~ 506 (814) T COG0495 428 R-YWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFF 506 (814) T ss_pred H-HHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHCCCCCCCHHHC T ss_conf 9-708996454742378554736766743664114679889998883617996699853532324657604321018665 Q ss_pred CC-----CCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHHHHHHHHH----HCCCCCCCCCCEEE-CCCCCCHHHCC Q ss_conf 34-----67654310002411000045643210001---02477654331----01232333430330-58601000002 Q gi|255764461|r 243 GY-----LDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPAFLLSANL----PLPKKVFSHGFILH-KGEKISKSLGN 309 (511) Q Consensus 243 ~~-----~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa~l~~~~~----~~p~~i~~~g~l~~-~G~KMSKS~GN 309 (511) .. .......+.+|.|.|++..|+|-+.-|-+ ||-..|...|+ .+.+.++++|||+. +|+|||||+|| T Consensus 507 d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN 586 (814) T COG0495 507 DPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN 586 (814) T ss_pred CHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC T ss_conf 81007543225788742067201226366777889999999988347577877650444411426874277704544578 Q ss_pred CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHH-H Q ss_conf 211100000022111211100002478730111222111001332110221021345565312332103455589556-5 Q gi|255764461|r 310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESD-E 388 (511) Q Consensus 310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D-~ 388 (511) +|+|++++++||||++|+|+++.+|..+|.+|+++++....+ +++.++|++. ....+. ....+..+ . T Consensus 587 ~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r--fL~r~~~l~~-------~~~~~~---~~~~~~~~~~ 654 (814) T COG0495 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARR--FLQRVWNLVK-------EHLEKL---VEELTKEQGK 654 (814) T ss_pred CCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHH--HHHHHHHHHH-------HHHHCC---CCCCCCHHHH T ss_conf 889899999958409899998608775378877456489999--9999999999-------864023---3335530568 Q ss_pred HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 6678999999999987750-358999999999999997886541870121699999999999999999999998543224 Q gi|255764461|r 389 SILSVCSRVLQEIRENMQN-QLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVP 467 (511) Q Consensus 389 ~ll~~l~~~~~~v~~a~e~-~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P 467 (511) .....++++++.+++.++. +.++.|+..+|++.+...+|....+ .+. . ++.+++..+..||+||+| T Consensus 655 ~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~------~~~----~---~l~~~l~~~v~lLaP~aP 721 (814) T COG0495 655 EDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTE------GDR----K---VLREALETWVRLLAPFAP 721 (814) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHH----H---HHHHHHHHHHHHHCCCCC T ss_conf 899999999999999999998899999999999999999875023------207----8---999999999999666664 Q ss_pred HHHHHHHHHCCCCC--CCCCHHHHCC Q ss_conf 89999999849880--0079555101 Q gi|255764461|r 468 KLANKIFDILFVAD--ENRCFQSLDQ 491 (511) Q Consensus 468 ~~ae~i~~~Lg~~~--~~~~~~~~~~ 491 (511) |+||++|+.||.++ ....|+..++ T Consensus 722 H~aEElW~~lg~~~~v~~~~wP~~de 747 (814) T COG0495 722 HIAEELWEELGNEGFVSNAPWPEPDE 747 (814) T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCH T ss_conf 77999999966998164178998773 No 27 >cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Probab=100.00 E-value=0 Score=579.80 Aligned_cols=300 Identities=41% Similarity=0.759 Sum_probs=276.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC----------CHHHHHHH Q ss_conf 17997888999988322247897899999999885898036236437022799999998399----------98999999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV----------TTKVFVDQ 75 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~----------~p~e~~~~ 75 (511) ||+||+|+|||||+||||||++++.+|+++||+||+|++|+|++|+|+||+||+.+|++++. +|++++++ T Consensus 1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (334) T cd00668 1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGKKEEFLEDPKEWVDK 80 (334) T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 98995599888886146675989999999999981699536068668656899999999687121057777539999999 Q ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC Q ss_conf 99999999998088988--6747788889999999988875431022110001011334301556672111222222223 Q gi|255764461|r 76 NSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQ 153 (511) Q Consensus 76 ~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (511) |++.++++++++||++| .+.+|++|+|.+.++++|++|.++|+||++..++ T Consensus 81 ~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v--------------------------- 133 (334) T cd00668 81 YIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPV--------------------------- 133 (334) T ss_pred HHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCC--------------------------- T ss_conf 99999999999689768787611599999999999999999879989505667--------------------------- Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----------- Q ss_conf 320000345443446664444434443333210006765457754103456753234333777657864----------- Q gi|255764461|r 154 HNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPD----------- 222 (511) Q Consensus 154 ~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~----------- 222 (511) +.++||||+++++++.|.+++++.. +.|+.+++.+.+|++++++||||||++ +||+|+|. T Consensus 134 ------~~~~~~f~~~~~~~~~l~~~~~~~~--~~p~~~~~~~~~~l~~~~~d~~isR~~-~wG~~~P~~~~~~~~~~~~ 204 (334) T cd00668 134 ------RLTEQWFLKLSKLKDRLLEALEKNE--IWPENVRNRFLNWLENGLRDWCISRQR-YWGIPIPAWYCEDCGEVCP 204 (334) T ss_pred ------CCCCEEEEEHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCEEECCCCCCCCC T ss_conf ------7565477788999999999998489--877899999998874678775257334-6787556133256775566 Q ss_pred -------CCCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCC Q ss_conf -------2221464602444322001234676543--10002411000045643210001024776543-3101232333 Q gi|255764461|r 223 -------DPQYIMYVWIDALTNYLTTTGYLDNPDG--SKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFS 292 (511) Q Consensus 223 -------~~~~~~YVWfDa~~gY~s~~~~~~~~~~--~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~ 292 (511) .+++|+||||||+++|++..+++.+..+ .+..++|.|+|++|+||+++|..++||++.++ +.++|+++++ T Consensus 205 ~~~~~~~~~~~~~~~Wfds~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~ 284 (334) T cd00668 205 KCGKELKRETDVLDVWFDSGIGYLSALGYPNEEEGFEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALFGKPPPKNVLV 284 (334) T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHEEE T ss_conf 65311368765344664175654322678643325668761798169871561363299999999998449850877574 Q ss_pred CCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE Q ss_conf 430330-5860100000221110000002211121110000247873011 Q gi|255764461|r 293 HGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY 341 (511) Q Consensus 293 ~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511) |||+++ +|+|||||+||+|++.|++++||+|++||||++.+|+++|++| T Consensus 285 ~g~~~~~~G~KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~~d~~f 334 (334) T cd00668 285 HGLVLDEGGRKMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEGEDLNF 334 (334) T ss_pred CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC T ss_conf 20198389957388699888989999875948999999942998889998 No 28 >pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included. Probab=100.00 E-value=0 Score=555.57 Aligned_cols=333 Identities=25% Similarity=0.390 Sum_probs=280.4 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-----CCCH-------- Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-----9998-------- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-----GVTT-------- 69 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-----g~~p-------- 69 (511) +++||+|+.|+|||||.|||||+++|+.+|+++||+||+|++|+|+.|+|+||+||+.+|++. +.++ T Consensus 21 ~k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~vek~~~~~~~~~~~~~~~~~~ 100 (606) T pfam00133 21 GKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKF 100 (606) T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHH T ss_conf 99958997089897885024266878999999999982899779988456143999999999742115998365799999 Q ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC Q ss_conf ----999999999999999980889886--74778888999999998887543102211000101133430155667211 Q gi|255764461|r 70 ----KVFVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK 143 (511) Q Consensus 70 ----~e~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~ 143 (511) +++++++.+.++++++++|+++|+ ...|++|++.+++|++|.+|+++|+||++..+++|||.|++.|++.+|.. T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y~~~~~w~F~~L~~~Gliyr~~~~V~wcp~~~T~La~~Ev~~ 180 (606) T pfam00133 101 REKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEY 180 (606) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCCEEE T ss_conf 99999999999999999999829126458872527812549999999999977981775155012442541224440210 Q ss_pred CC------------------------------------------------------------------------------ Q ss_conf 12------------------------------------------------------------------------------ Q gi|255764461|r 144 GA------------------------------------------------------------------------------ 145 (511) Q Consensus 144 ~~------------------------------------------------------------------------------ 145 (511) +. T Consensus 181 ~d~~~~~~~v~f~l~~~~~~~l~i~TTrPeTl~g~~~l~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (606) T pfam00133 181 KDVKGPSIHVAFPLADGKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDF 260 (606) T ss_pred CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCC T ss_conf 00333035650445789876699994354200365368988887651044386067899999999974033024333133 Q ss_pred ---------------------------------------------------------------CC--------------- Q ss_conf ---------------------------------------------------------------22--------------- Q gi|255764461|r 146 ---------------------------------------------------------------DG--------------- 147 (511) Q Consensus 146 ---------------------------------------------------------------~~--------------- 147 (511) +| T Consensus 261 ~g~~l~G~~~~~P~~~~~ipv~~~~~V~~~~GTG~V~~vPah~~~D~~~~~k~~l~~~~~i~~~g~~~~~~~~~~G~~v~ 340 (606) T pfam00133 261 RGKELIGKKYIHPFVNREIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPEFQGLKRF 340 (606) T ss_pred CCCEECCCEEECCCCCCEEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCEEE T ss_conf 45231277897887897578995464156668771333677777999999983998502448988466765111585256 Q ss_pred --------------------------CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf --------------------------222223320000345443446664444434443333210006765457754103 Q gi|255764461|r 148 --------------------------QYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK 201 (511) Q Consensus 148 --------------------------~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~ 201 (511) .+|..|+.|++.+.+.|||++++++++.+.+.++. .. +.|+..++.+.+|++ T Consensus 341 ~a~~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~vi~~~~~QWFi~~~~~k~~~~~~~~~-~~-~~P~~~~~~~~~~l~ 418 (606) T pfam00133 341 KARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEK-VQ-FVPKWGEKRYGNWLE 418 (606) T ss_pred ECCHHHHHHHHHCCCEEEEEEECCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH-HH-CCCHHHCCHHHEEEC T ss_conf 0218999978868986653220101555547894799960278777559999999986443-30-275010120330552 Q ss_pred CCCCCCCCCCCCCCCCCCCCCC------------------------------------------------CCCCCCCCHH Q ss_conf 4567532343337776578642------------------------------------------------2214646024 Q gi|255764461|r 202 SGLKDLSLSRKTFDWGIKIPDD------------------------------------------------PQYIMYVWID 233 (511) Q Consensus 202 ~gl~Dw~ISR~~~~WGipiP~~------------------------------------------------~~~~~YVWfD 233 (511) + |+|||||||| +||+|||.. +..|+++||| T Consensus 419 ~-l~DW~iSRQR-~WGtPIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~re~DtmDtwfd 496 (606) T pfam00133 419 N-IQDWCISRQR-WWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFS 496 (606) T ss_pred C-CCCCEEEEEC-CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEECCEEEECEEC T ss_conf 5-6563575414-6787322698378983167502455554430466753101212465535788751567761202111 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHH---HHHHCCCCCCCCCCEE-ECCCCCCHHHCC Q ss_conf 443220012346765431000241100004564321000102477654---3310123233343033-058601000002 Q gi|255764461|r 234 ALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLS---ANLPLPKKVFSHGFIL-HKGEKISKSLGN 309 (511) Q Consensus 234 a~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~---~~~~~p~~i~~~g~l~-~~G~KMSKS~GN 309 (511) +...|.+..++..+....+.+|+|.|+++.|+|+++||.... ++.+ .+..+.+++++||||+ .+|+|||||+|| T Consensus 497 Sg~~~~~~~~~p~~~~~~f~~~~PvD~~i~G~D~~r~w~~~~--~~~~~~~~~~~Pfk~l~~~G~vld~~G~KMSKSkGN 574 (606) T pfam00133 497 SGSWPFSTLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRM--IVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGN 574 (606) T ss_pred CCCCHHHHHCCCHHCHHHHHCCCCCCEEECCHHHHHHHHHHH--HHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC T ss_conf 775689884785127698953889848977676884899999--970000279976545887661899988788888899 Q ss_pred CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEEC Q ss_conf 211100000022111211100002478730111 Q gi|255764461|r 310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYD 342 (511) Q Consensus 310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs 342 (511) +|+|.+++++||||++|+|+++ +++++|++|| T Consensus 575 vv~p~~~i~~yGaD~~Rl~~~~-a~~~~D~~~S 606 (606) T pfam00133 575 VIDPLDVIDKYGADALRLWLAS-SDYGRDINFS 606 (606) T ss_pred CCCHHHHHHHHCHHHHHHHHHC-CCCHHCCCCC T ss_conf 7898999987492999999975-9922046559 No 29 >KOG0432 consensus Probab=100.00 E-value=0 Score=500.10 Aligned_cols=458 Identities=27% Similarity=0.398 Sum_probs=360.6 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----C-CCC-----HHHH- Q ss_conf 8817997888999988322247897899999999885898036236437022799999998----3-999-----8999- Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----A-GVT-----TKVF- 72 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~-g~~-----p~e~- 72 (511) ...|.|+.|||.+.|.||||||.+....|.++||.||.|+.|+|++|+|--|..++...+| + |++ .+++ T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~ 153 (995) T KOG0432 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL 153 (995) T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH T ss_conf 88532515999765631065788878899999999825975332488663352479999999987158632114899999 Q ss_pred ------HHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC Q ss_conf ------999999999999980889886747---78888999999998887543102211000101133430155667211 Q gi|255764461|r 73 ------VDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK 143 (511) Q Consensus 73 ------~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~ 143 (511) -+++...+.++++++|.++| |.| |.|+.-.+.|-+.|.+|+++|.||++..-+.||+.-...++|-+|.. T Consensus 154 ~~vw~Wk~e~g~~I~~Qlk~lGas~D-W~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995) T KOG0432 154 KEVWEWKEEYGGRIYNQLKRLGASLD-WDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995) T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHEECC T ss_conf 99999998858519999998357320-14756034778889999999998764846733752641366775654540012 Q ss_pred C-------------------------------C----------------------------------------------- Q ss_conf 1-------------------------------2----------------------------------------------- Q gi|255764461|r 144 G-------------------------------A----------------------------------------------- 145 (511) Q Consensus 144 ~-------------------------------~----------------------------------------------- 145 (511) . . T Consensus 233 ~ei~~~t~l~vpGyd~~VeFG~L~~~aY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lP 312 (995) T KOG0432 233 VEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLP 312 (995) T ss_pred EECCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCC T ss_conf 12588735734787762353234577876058987389734886411133157757877643000675443477799665 Q ss_pred -------------------------------------------CCC---------------------------------- Q ss_conf -------------------------------------------222---------------------------------- Q gi|255764461|r 146 -------------------------------------------DGQ---------------------------------- 148 (511) Q Consensus 146 -------------------------------------------~~~---------------------------------- 148 (511) +|. T Consensus 313 iI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~ 392 (995) T KOG0432 313 IICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE 392 (995) T ss_pred EEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 66311025445666247367888067888875399812678587853225410047478889999999999841553167 Q ss_pred -------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -------2222332000034544344666444443444333321000676545775410345675323433377765786 Q gi|255764461|r 149 -------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIP 221 (511) Q Consensus 149 -------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP 221 (511) .|..+|.-+|.+-..|||++..+++.+..+.+++..--+.|+....+...|+++ .+||||||| +|||+.|| T Consensus 393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~-i~DWCiSRQ-LWWGHrIP 470 (995) T KOG0432 393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLEN-IRDWCISRQ-LWWGHRIP 470 (995) T ss_pred CCCEECCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHH-CCCCCHHHH-HHHCCCCC T ss_conf 8852523347777733601254001337999999999874497587755778789999751-302121344-43045464 Q ss_pred CC----------C-------------------------------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCH Q ss_conf 42----------2-------------------------------214646024443220012346765431000241100 Q gi|255764461|r 222 DD----------P-------------------------------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADL 260 (511) Q Consensus 222 ~~----------~-------------------------------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~ 260 (511) .+ + ..|++.||-+.+-++|+.||+. ...++..|+|.++ T Consensus 471 Ay~v~~~~~~~ee~~Wvv~rseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~-~t~d~~~fyP~sl 549 (995) T KOG0432 471 AYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPE-ETKDFKNFYPLSL 549 (995) T ss_pred EEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCHHCCCCC-CCCCHHHCCCCHH T ss_conf 256202467776661688588999999999971885321251484277766641533211048965-5641876298415 Q ss_pred HCCCCCCCCHHCCHHHHHH--HH---HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHH---------------- Q ss_conf 0045643210001024776--54---33101232333430330-58601000002211100000---------------- Q gi|255764461|r 261 HVIGKDILRFHAIYWPAFL--LS---ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIE---------------- 318 (511) Q Consensus 261 ~~~G~Dii~Fh~i~~pa~l--~~---~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~---------------- 318 (511) .=.|.||++| |.|-+ ++ +|.-+++.|+.||+|-. .|+|||||+||||+|.|+|+ T Consensus 550 lETG~DILfF----WVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNL 625 (995) T KOG0432 550 LETGHDILFF----WVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNL 625 (995) T ss_pred HHCCCHHHHH----HHHHHHHHHHHHCCCCCCHHEEECHHHCCCCCCCCCHHHCCCCCHHHHHCCCCHHHHHHHHHCCCC T ss_conf 4327527899----999999965555177773411442121135245221100452488887523129999999872799 Q ss_pred ---------------------HCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CC Q ss_conf ---------------------02211121110000247873011122211100133211022102134556531233-21 Q gi|255764461|r 319 ---------------------EVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYD-GM 376 (511) Q Consensus 319 ---------------------~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~-g~ 376 (511) ++|.|++||.|++...-+.|++++..++.. +..+.||+|| +++|+....+ +. T Consensus 626 dp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g--~r~FcNKlWN----a~rF~l~~lg~~~ 699 (995) T KOG0432 626 DPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEG--YRHFCNKLWN----ATRFALQRLGENF 699 (995) T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHHHHHHH----HHHHHHHHCCCCC T ss_conf 989999998777753678874335389999998712567644441898766--8999999999----9999987435578 Q ss_pred CCCC----CCCCH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCCCH---HHHHH Q ss_conf 0345----55895-565667899999999998775035899999999999--99978865418701216999---99999 Q gi|255764461|r 377 IPTP----GAFTE-SDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKTNP---DRAST 446 (511) Q Consensus 377 ip~~----~~~~~-~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~d~---~~~~~ 446 (511) +|.+ +.... .|.|++++++.+++.+.++|+.++|..|...+.+|. +.|+.|++..+| .+..++. ..+.. T Consensus 700 ~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp-~l~~~~~~~~~~a~~ 778 (995) T KOG0432 700 VPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKP-LLWGDSEALAYEARR 778 (995) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHH T ss_conf 8882235687741068999999999999998511200167789999999999998999998558-762893454466788 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC Q ss_conf 999999999999998543224899999998498 Q gi|255764461|r 447 VLYVTVEVIRQLAILLQAFVPKLANKIFDILFV 479 (511) Q Consensus 447 vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~ 479 (511) +|+.++. ....||+|||||+||++|+.|-. T Consensus 779 vL~~~ld---~gLrll~PfMPFvtEelwqrlP~ 808 (995) T KOG0432 779 VLYRCLD---NGLRLLHPFMPFITEELWQRLPR 808 (995) T ss_pred HHHHHHH---HHHHHHCCCCHHHHHHHHHHCCC T ss_conf 9999999---88998457440308999985667 No 30 >TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=100.00 E-value=0 Score=509.43 Aligned_cols=459 Identities=23% Similarity=0.362 Sum_probs=345.9 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC------------------- Q ss_conf 8179978889999883222478978999999998858980362364370227999999983------------------- Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA------------------- 65 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~------------------- 65 (511) +||++|.|.||+||.||+||.|||...|+++||+||+|++|+|+.|+=+=|+||..-|++. T Consensus 41 PKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~GknvLFPlGfHvTG~Pilg~A~~i~~~de~t~~~Y~~~h~eee 120 (1109) T TIGR00395 41 PKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEKTIKVYTEVHAEEE 120 (1109) T ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHHH T ss_conf 50320157655674421233443331315887661068400224654435862788999973006046788520575134 Q ss_pred ------------------------------------------CCC---------HHHHHHHHHHHHHHHHHHHCCCCCC- Q ss_conf ------------------------------------------999---------8999999999999999980889886- Q gi|255764461|r 66 ------------------------------------------GVT---------TKVFVDQNSRNFRDMADVLDISYDD- 93 (511) Q Consensus 66 ------------------------------------------g~~---------p~e~~~~~~~~~~~~~~~~~i~~D~- 93 (511) |++ |+.+++.+.....+.++.+|.|.|+ T Consensus 121 eikeetPaekDheDvtkfkakkskaaakkGrGkYqfeimlqlGiP~eel~~l~dpe~iveYFs~~~~~~~~~~G~siDWR 200 (1109) T TIGR00395 121 EIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIMLQLGIPREELLKLTDPEYIVEYFSREAESALKSMGYSIDWR 200 (1109) T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECC T ss_conf 43015776444145666654443566641787312456331379879997204843021038877999998648805225 Q ss_pred --CCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC------------------------ Q ss_conf --747788--8899999999888754310221100010113343015566721112------------------------ Q gi|255764461|r 94 --FIRTTE--KRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA------------------------ 145 (511) Q Consensus 94 --~~rT~~--~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~------------------------ 145 (511) |. |+| +.|.+++++-+.||.+.|+|-+|++++-|||+|+.-..|..+..|. T Consensus 201 R~F~-TtDan~~Y~~FI~WQ~~KLk~~Gli~kG~hpv~Ycp~d~npv~DHD~l~GE~vt~~ey~~~Kf~~~d~~DDaaki 279 (1109) T TIGR00395 201 REFK-TTDANPVYDRFIEWQIRKLKELGLIVKGEHPVRYCPKDENPVEDHDLLSGEGVTIVEYILIKFKLEDGADDAAKI 279 (1109) T ss_pred CCCE-ECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHH T ss_conf 5521-258746667899999999986595441786602377776854455533356433010367666642775302454 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 280 iDsssDlDkskk~~~v~ATLRPET~yG~Tn~wv~P~~~Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~Pk 359 (1109) T TIGR00395 280 IDSSSDLDKSKKLYFVAATLRPETVYGVTNVWVNPDITYVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPK 359 (1109) T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC T ss_conf 31111010145166403568874100755355557751689973374001200445542257778999960434345887 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 360 rGf~~~~~~v~g~~liG~~v~~Pq~v~~e~pILPa~fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~ 439 (1109) T TIGR00395 360 RGFLKVIEEVDGKQLIGKKVKNPQVVGKEVPILPAEFVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDV 439 (1109) T ss_pred CCEEEEEEEECHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHH T ss_conf 42278865307342417644577325897754770112678885478841788703589998607780145532773246 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 146 -------------------------------------------------------------------------------- 145 (511) Q Consensus 146 -------------------------------------------------------------------------------- 145 (511) T Consensus 440 v~di~~v~~i~~~~yG~~pA~~ive~~gi~sq~dk~~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~ 519 (1109) T TIGR00395 440 VEDIEPVPLIKVDGYGDLPAKEIVEELGIKSQKDKNLLEEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLID 519 (1109) T ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 64148556763088777548999988288887720247887400221321500320477578861179999999999985 Q ss_pred -----------CCCCCCCCCCCEECC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf -----------222222233200003-4544344666--44444344433332100067654577541034567532343 Q gi|255764461|r 146 -----------DGQYYNAQHNPVQWM-EEEGYFFRLS--AYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSR 211 (511) Q Consensus 146 -----------~~~~~~~~~~p~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR 211 (511) .-.+.+.||.++..+ -+.|||++.| +++++..+.++. +.+.|+++|+...+.++- |+||+++| T Consensus 520 ~GlA~v~yEFsE~~VicRcG~~CiV~v~~DQWF~~Ys~~~WK~~a~~CLeg--M~~ip~~~k~~F~~~idW-L~dwAc~R 596 (1109) T TIGR00395 520 KGLADVMYEFSEKPVICRCGTKCIVKVVEDQWFVKYSDESWKELAHECLEG--MRIIPEEVKEAFEEKIDW-LKDWACAR 596 (1109) T ss_pred CCCCEEECCCCCCCEEECCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHH-HCCCEEEE T ss_conf 378602016578851202679606988516001114515689999987433--732768888888776664-23630461 Q ss_pred CCCCCCCCCCCCCCC--------CCCCCH--------H----HHHHHHCCC----------------------------- Q ss_conf 337776578642221--------464602--------4----443220012----------------------------- Q gi|255764461|r 212 KTFDWGIKIPDDPQY--------IMYVWI--------D----ALTNYLTTT----------------------------- 242 (511) Q Consensus 212 ~~~~WGipiP~~~~~--------~~YVWf--------D----a~~gY~s~~----------------------------- 242 (511) .+ .-|+.+|+|+++ |||-=| . +=||++..+ T Consensus 597 r~-GLGTrlPwde~wliESLsDSTIY~aYYtiA~~l~~~~~g~EiGPlGisaD~mt~E~fDyifl~~gdV~K~Ak~t~ip 675 (1109) T TIGR00395 597 RK-GLGTRLPWDEKWLIESLSDSTIYMAYYTIAKYLNKDDLGNEIGPLGISADQMTDEFFDYIFLGKGDVDKVAKNTNIP 675 (1109) T ss_pred CC-CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCCHHHHHHHHCCC T ss_conf 24-67777875675477127623256789999999852145776455544420057445224323887156776540788 Q ss_pred -CCCCCCCCCCCCCCCCCHHCCCCCCCC--------HHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCC Q ss_conf -346765431000241100004564321--------00010247765433101232333430330586010000022111 Q gi|255764461|r 243 -GYLDNPDGSKAKFWPADLHVIGKDILR--------FHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDP 313 (511) Q Consensus 243 -~~~~~~~~~~~~~w~~d~~~~G~Dii~--------Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~ 313 (511) .-...-..+|.+|+|-|+..-|||.|. .|.-+|| ...||+.|.+|||+++||.|||||+||++++ T Consensus 676 ~~~~~~lR~eF~Y~YPlD~r~SgKDLi~NHLtFyiF~HvAiFP------~~~WPrGi~vnG~~~Leg~KmSkSkGn~l~l 749 (1109) T TIGR00395 676 LELIEKLREEFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFP------EKFWPRGIVVNGYVLLEGKKMSKSKGNVLTL 749 (1109) T ss_pred HHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHEEEECC------CCCCCCEEEEEEEEEEECCCCCCCCCCCHHH T ss_conf 8899875543410056010024310103467766440024248------7989761799757887173405454762238 Q ss_pred CCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCC---CCCHHHH Q ss_conf 00000022111211100002478730111222111001332110221021345565312332--103455---5895565 Q gi|255764461|r 314 IEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDG--MIPTPG---AFTESDE 388 (511) Q Consensus 314 ~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g--~ip~~~---~~~~~D~ 388 (511) .+++++||||+.|+|+++.+...+|.||...++.+..+. +..|-||+.|+.. ..+| .+.+.+ ..+..|+ T Consensus 750 ~~~vekfGADv~Rl~~~~aAe~~~Dad~~~~e~~~~~~~--L~~l~~~a~e~~~----~~~GrPvl~e~GPaE~~~f~D~ 823 (1109) T TIGR00395 750 KEAVEKFGADVARLYILDAAELVQDADWKESEVEGTKKR--LERLYEFAEEITK----KSDGRPVLLEVGPAEELSFIDR 823 (1109) T ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH----HHCCCEEEECCCCCCCHHHHHH T ss_conf 899987276189999973178721356106778999999--9999999999854----3068401103577763105218 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 66789999999999877503589999-99999999997886541870121699999999999999999999998543224 Q gi|255764461|r 389 SILSVCSRVLQEIRENMQNQLIHRAL-AQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVP 467 (511) Q Consensus 389 ~ll~~l~~~~~~v~~a~e~~~~~~Al-~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P 467 (511) |+++++++++++++++|+++++++|+ ..+++|-+....|..+..- .-+++..++|. +.|-..+.||+||+| T Consensus 824 wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~d~~~Y~~r~g~-----~~~Devksvla---~~l~~~i~LlaPf~P 895 (1109) T TIGR00395 824 WLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKADVDWYRRRGGE-----NVKDEVKSVLA---RVLETWIKLLAPFAP 895 (1109) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHH---HHHHHHHHHHCCCCH T ss_conf 9999999999999999986667899999999999999999986488-----40057999999---999999998323121 Q ss_pred HHHHHHHHHC-CCCCCCCCHHHH Q ss_conf 8999999984-988000795551 Q gi|255764461|r 468 KLANKIFDIL-FVADENRCFQSL 489 (511) Q Consensus 468 ~~ae~i~~~L-g~~~~~~~~~~~ 489 (511) |+||+||+.+ |-.. ..+...+ T Consensus 896 h~aEe~w~~~lG~~~-fV~~a~f 917 (1109) T TIGR00395 896 HLAEEMWEEVLGKEG-FVSLAKF 917 (1109) T ss_pred HHHHHHHHHHHCCCC-CCCCCCC T ss_conf 689999999708873-1136779 No 31 >KOG0435 consensus Probab=100.00 E-value=0 Score=478.76 Aligned_cols=449 Identities=24% Similarity=0.355 Sum_probs=326.1 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 88817997888999988322247897899999999885898036236437022799999998399989999999999999 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD 82 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~ 82 (511) +++| ||-+..|||+|.|||||.|.|+.+|+++||.||+||+|++++|||.+|+|.|++|.+.|++|+.++.++.+.+++ T Consensus 56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~ 134 (876) T KOG0435 56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQ 134 (876) T ss_pred CCCC-EEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 7873-699736788876112642799725889999985486421577630348835667875488920546989999999 Q ss_pred HHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECC Q ss_conf 99980889886--7477888899999999888754310221100010113343015566721112222222233200003 Q gi|255764461|r 83 MADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWM 160 (511) Q Consensus 83 ~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~ 160 (511) ++.++||+||+ -+.|++|++++++|.||.+|+++|++|+.+.++.|||.+.+.|++.+|... .+...+|.+||.. T Consensus 135 Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~---G~SWRSGA~VEkK 211 (876) T KOG0435 135 QLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDAD---GCSWRSGAKVEKK 211 (876) T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHCCC---CCCCCCCCHHHHH T ss_conf 9997376012455323478315678999999999711221113536657201215322010355---7553456546577 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--------------------------------------- Q ss_conf 45443446664444434443333210006765457754103--------------------------------------- Q gi|255764461|r 161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK--------------------------------------- 201 (511) Q Consensus 161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~--------------------------------------- 201 (511) ..+|||++.++|+++|++-+++-++| |+ +++.-.+|+. T Consensus 212 ~LrQWfikttaYAk~L~d~L~~L~~W--~~-vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl 288 (876) T KOG0435 212 KLRQWFIKTTAYAKRLLDGLETLPEW--PE-VKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVL 288 (876) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEE T ss_conf 88889863168899999998750301--66-8999874312454207987832687787458999458244226257997 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 202 -------------------------------------------------------------------------------- 201 (511) Q Consensus 202 -------------------------------------------------------------------------------- 201 (511) T Consensus 289 ~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~ 368 (876) T KOG0435 289 APSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKW 368 (876) T ss_pred CCCCHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEECHHCCCCCCCEEEECCCCCCCHHHHHHCCCCEE T ss_conf 37754665303387764444323667535414316777762017985101367776104536676641068886346406 Q ss_pred ------------------------------------------------CCCCCCCCCCCCCCCCCCCCC----------- Q ss_conf ------------------------------------------------456753234333777657864----------- Q gi|255764461|r 202 ------------------------------------------------SGLKDLSLSRKTFDWGIKIPD----------- 222 (511) Q Consensus 202 ------------------------------------------------~gl~Dw~ISR~~~~WGipiP~----------- 222 (511) .-|+||-||||| |||+|||- T Consensus 369 ~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQR-yWGTPIPivhc~~cG~vpV 447 (876) T KOG0435 369 IICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQR-YWGTPIPIVHCDDCGAVPV 447 (876) T ss_pred EEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHH-CCCCCCCEEECCCCCCCCC T ss_conf 888743215624432022554155788899999999874378762321133556432222-1689864587678886457 Q ss_pred -------------------------------------C----CCCCCCCCHHHHHHHHCCCCCCCCCCC------C-CCC Q ss_conf -------------------------------------2----221464602444322001234676543------1-000 Q gi|255764461|r 223 -------------------------------------D----PQYIMYVWIDALTNYLTTTGYLDNPDG------S-KAK 254 (511) Q Consensus 223 -------------------------------------~----~~~~~YVWfDa~~gY~s~~~~~~~~~~------~-~~~ 254 (511) . |-.|+..|+|+..=|+- |+...+. . -.+ T Consensus 448 pes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlR---ylDpkN~e~~~d~a~a~k 524 (876) T KOG0435 448 PESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLR---YLDPKNPEEPFDKAKAKK 524 (876) T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCHHHCCCEEEEE---ECCCCCCCCCCCHHHHHC T ss_conf 58878854653123578899641236561356866799643455541001003135676---237898545442556532 Q ss_pred CCCCCHHCCCCCCC------------------------CHHCCHHHHHHHHH-------H-HHCCCCC-CCC----CCEE Q ss_conf 24110000456432------------------------10001024776543-------3-1012323-334----3033 Q gi|255764461|r 255 FWPADLHVIGKDIL------------------------RFHAIYWPAFLLSA-------N-LPLPKKV-FSH----GFIL 297 (511) Q Consensus 255 ~w~~d~~~~G~Dii------------------------~Fh~i~~pa~l~~~-------~-~~~p~~i-~~~----g~l~ 297 (511) +-|.|+++.|++-. +|+.++=..|.++. | +-.|+.+ .++ -+++ T Consensus 525 ~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vl 604 (876) T KOG0435 525 NMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVL 604 (876) T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCEEEE T ss_conf 68615885548999999999999999875528776887488887510003417862777762787776663477663575 Q ss_pred EC--------CCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHH Q ss_conf 05--------8601000002211100000022111211100002478730111222111001332110221021345565 Q gi|255764461|r 298 HK--------GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMI 369 (511) Q Consensus 298 ~~--------G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~ 369 (511) .+ =+|||||++|+|+|.+++.+||+|.+|+|++..+|+..++++++..+....+ +..++|++++++.. T Consensus 605 k~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~r--wl~riw~l~~~~~~-- 680 (876) T KOG0435 605 KNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKR--WLQRIWALVSQILQ-- 680 (876) T ss_pred CCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHHH-- T ss_conf 37995035448873202357989899998848317789998617865666666332454999--99999999887777-- Q ss_pred HHCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHH Q ss_conf 31233210345558----955656678999999999987750-3589999999999999978865418701216999999 Q gi|255764461|r 370 LKDYDGMIPTPGAF----TESDESILSVCSRVLQEIRENMQN-QLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRA 444 (511) Q Consensus 370 ~k~~~g~ip~~~~~----~~~D~~ll~~l~~~~~~v~~a~e~-~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~ 444 (511) +.-+|..+....+ ...+..+.+..+..++++++.||. +.++.|+..+|.|.+...+-.... +..+. + . T Consensus 681 -ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~----~~h~~-~-~ 753 (876) T KOG0435 681 -ARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIV----LVHSP-E-F 753 (876) T ss_pred -HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCH-H-H T ss_conf -775278655654444331367899999999998756788888888899999998878998752334----11473-7-8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC Q ss_conf 999999999999999985432248999999984988 Q gi|255764461|r 445 STVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA 480 (511) Q Consensus 445 ~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~ 480 (511) -.++..+.+||+|++|+.|+|+|+.|+-. T Consensus 754 -------~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876) T KOG0435 754 -------ERALEALVIMLAPFAPHVASELWSALAND 782 (876) T ss_pred -------HHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf -------89999999997125754589999998422 No 32 >KOG0433 consensus Probab=100.00 E-value=0 Score=463.04 Aligned_cols=436 Identities=23% Similarity=0.354 Sum_probs=326.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH-HHHHH------CCCCHHHH-------HHHHHHHHH Q ss_conf 99883222478978999999998858980362364370227999-99998------39998999-------999999999 Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIA-KAAQN------AGVTTKVF-------VDQNSRNFR 81 (511) Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~-~~A~~------~g~~p~e~-------~~~~~~~~~ 81 (511) +||.||||||++-|+.||+-||+-++|..|.|++||||||+||+ .+|.+ ..+||.|+ ++.-.+.++ T Consensus 66 anG~lhlghAlnKILkdiinr~~l~~g~~v~yvPGWDCHGLPIEs~Kals~l~~~~~~~spleiR~kAr~fA~~AIk~Q~ 145 (937) T KOG0433 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM 145 (937) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 88980167789899999999999974874425789876887368778755321211467818999999999999999999 Q ss_pred HHHHHHCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC------------ Q ss_conf 999980889886---74778888999999998887543102211000101133430155667211122------------ Q gi|255764461|r 82 DMADVLDISYDD---FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD------------ 146 (511) Q Consensus 82 ~~~~~~~i~~D~---~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~------------ 146 (511) +.|+++||--|+ |. |.+|+++...-++|.+|+++|+||+.-.+++|+|.-.+.|+++++++.++ T Consensus 146 e~F~r~gv~aDW~npY~-T~~~~yeaaQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L 224 (937) T KOG0433 146 EAFRRWGVTADWENPYV-TKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKL 224 (937) T ss_pred HHHHHHEEECCCCCCEE-ECCHHHHHHHHHHHHHHHHCCCEECCCCCCEECCCCHHHHHHHHCCCCCCCCCEEEEEEEEC T ss_conf 99887501105788306-23807789999999999866613305776013675312555643157867755148999863 Q ss_pred --------------------------------------------------------------------------CC---- Q ss_conf --------------------------------------------------------------------------22---- Q gi|255764461|r 147 --------------------------------------------------------------------------GQ---- 148 (511) Q Consensus 147 --------------------------------------------------------------------------~~---- 148 (511) |+ T Consensus 225 ~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t 304 (937) T KOG0433 225 INFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGT 304 (937) T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHCCCCEEEEEE T ss_conf 67762212577766747999984787545466413532334058999236776659997001066665313864345300 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 149 -------------------------------------------------------------------------------- 148 (511) Q Consensus 149 -------------------------------------------------------------------------------- 148 (511) T Consensus 305 ~~g~~L~~~~Y~hpl~~~~~~P~l~g~hVT~~~GTGLVHTAPaHG~eDYlv~l~~gl~~~s~VD~~G~yT~ea~~~l~Gk 384 (937) T KOG0433 305 VKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGK 384 (937) T ss_pred CCHHHCCCCEECCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCC T ss_conf 36223157623686765568864246633047566204417877748777776439976665577771340146412561 Q ss_pred -----------------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf -----------------------------222233200003454434466644444344433332100067654577541 Q gi|255764461|r 149 -----------------------------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISF 199 (511) Q Consensus 149 -----------------------------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~w 199 (511) +...+..|+.+|.++|||+++.+++....+.++.- .+ .|....+.+..+ T Consensus 385 ~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~V-k~-~P~~~~~rl~~~ 462 (937) T KOG0433 385 EVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDV-KV-APGDSDLRLKQL 462 (937) T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEHHHHHHHHHHHHHHC-EE-CCCCHHHHHHHH T ss_conf 1232630769999865455201023258865455896599506155024775506899988512-43-786308899999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------CCC-------------- Q ss_conf 034567532343337776578642---------------------------------------221-------------- Q gi|255764461|r 200 VKSGLKDLSLSRKTFDWGIKIPDD---------------------------------------PQY-------------- 226 (511) Q Consensus 200 l~~gl~Dw~ISR~~~~WGipiP~~---------------------------------------~~~-------------- 226 (511) ++. .++||||||| -||+|||.- |++ T Consensus 463 ~~~-Rp~WCISRQR-~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~d~a~ey~k 540 (937) T KOG0433 463 VTT-RPSWCISRQR-VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKK 540 (937) T ss_pred HCC-CCCCEEEECC-CCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCHHHHCCHHHHCCCCHHHHHHCC T ss_conf 717-9740553210-15885205785489835125899999999998718763276785671707663013116887436 Q ss_pred ---CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHH--HH-HHHCCCCCCCCCCEEE Q ss_conf ---464602444322001234676543100024110000456432--100010247765--43-3101232333430330 Q gi|255764461|r 227 ---IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLL--SA-NLPLPKKVFSHGFILH 298 (511) Q Consensus 227 ---~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~--~~-~~~~p~~i~~~g~l~~ 298 (511) +++||||+ ++.|-.-... .+--++|+.+-|.|.. ||.+. +|. |. +..+++.|++|||.+. T Consensus 541 gtDimDVWFDS------GssWs~v~~~--~~~~~aDv~LEG~DQ~rGWFQSs----LLTsvA~q~kAPYk~vivHGFtlD 608 (937) T KOG0433 541 GTDIMDVWFDS------GSSWSAVLDN--EREHVADVYLEGVDQFRGWFQSS----LLTSVAVQNKAPYKKVIVHGFTLD 608 (937) T ss_pred CCCEEEEEECC------CCCCEEECCC--CCCCCEEEEEECCHHCCHHHHHH----HHHHHHHHCCCCCHHEEEEEEEEC T ss_conf 88316667628------8851000478--88750006884412012378999----999998724687232156203766 Q ss_pred C-CCCCCHHHCCCCCCCCHHHH------CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 5-86010000022111000000------2211121110000247873011122211100133211022102134556531 Q gi|255764461|r 299 K-GEKISKSLGNVIDPIEVIEE------VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILK 371 (511) Q Consensus 299 ~-G~KMSKS~GN~I~~~e~l~~------~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k 371 (511) | |.|||||+||+|+|..+++. ||+|++|||++. .....|+..+..-+.+. .|-+-|+-| +.+|+.- T Consensus 609 E~G~KMSKSlGNVidP~~vi~G~~k~payGaD~LR~WVA~-s~~t~d~~iGp~il~qv--~e~l~K~R~----T~RfllG 681 (937) T KOG0433 609 ENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIKFRN----TFRFLLG 681 (937) T ss_pred CCCCCHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEC-CCCCCCEECCHHHHHHH--HHHHHHHHH----HHHHHHH T ss_conf 7754210022675788998477566887564100134423-55557510288999999--999999975----7798850 Q ss_pred CC---CC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCC--CH Q ss_conf 23---32---1034555895565667899999999998775035899999999999--999788654187012169--99 Q gi|255764461|r 372 DY---DG---MIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKT--NP 441 (511) Q Consensus 372 ~~---~g---~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~--d~ 441 (511) +. ++ .+| ...+.-.|+..+..+.++.+++++.|++|+|++++..+..|. ...|.|++..+. .|+.+ +. T Consensus 682 nl~d~~~~~~~~p-~~dl~~iDqy~L~ql~~~~~~i~elY~~Y~f~kVv~~lq~F~~~~lSa~YfdivKD-RLY~~~~~s 759 (937) T KOG0433 682 NLQDFDGKQVKFP-LKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKD-RLYCDKVGS 759 (937) T ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCC T ss_conf 4112477655100-10322324999999999999999999851589999999999997766789998766-530588886 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC Q ss_conf ---999999999999999999985432248999999984988 Q gi|255764461|r 442 ---DRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA 480 (511) Q Consensus 442 ---~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~ 480 (511) ..++++|+.++. .++..++||+|+++||+|+.|-.. T Consensus 760 ~~rrs~QttL~h~l~---~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937) T KOG0433 760 ESRRSAQTTLHHLLH---NLAHIISPILPHLAEEVWQHLPGS 798 (937) T ss_pred HHHHHHHHHHHHHHH---HHHHHHCCCCHHHHHHHHHHCCCC T ss_conf 888899999999999---999997343178899999748787 No 33 >pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases. Probab=100.00 E-value=0 Score=451.23 Aligned_cols=291 Identities=24% Similarity=0.292 Sum_probs=218.4 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 88817997888999988322247897899999999885898036236437022799999998399989999999999999 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD 82 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~ 82 (511) ++.++|||+|++| +.+|||||+++|.+|+++||+|++|++|.|+||+||||.||+.+|+++|++|+|+|+++.+.|++ T Consensus 8 ~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~~~~~F~~ 85 (301) T pfam01406 8 GKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITAYTK 85 (301) T ss_pred CEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9378997899068--99752233689999999999997499469996778631799999998098653799999999998 Q ss_pred HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECC Q ss_conf 99980889-88674778888999999998887543102211000-10113343015566721112222222233200003 Q gi|255764461|r 83 MADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYS-GWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWM 160 (511) Q Consensus 83 ~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~-~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~ 160 (511) +|++|||+ .|.|.||++ |.+.+++++++|.++|+||+++.. ++||..+... +| .+. +..++-+ T Consensus 86 ~~~~L~I~~~d~~~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~~~~-------yg---~l~---~~~~~~~ 150 (301) T pfam01406 86 DMDALNVLPPDLEPRVTE--HIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPD-------YG---KLS---GQNLEQL 150 (301) T ss_pred HHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCC-------CC---CCC---CCCHHHH T ss_conf 899849828986877543--57999999999997797687269988996667465-------44---046---4357777 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC Q ss_conf 45443446664444434443333210006765457754103456753234333777657864222146460244432200 Q gi|255764461|r 161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT 240 (511) Q Consensus 161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s 240 (511) .... ........++..++.++...+ .+-..| +. .||++.|+. ++|.+|...+. T Consensus 151 ~~~~--------~~~~~~~k~~~~df~Lwk~~~--------~~~~~~----~~-pwg~~~PgW-----hie~~~~~~~~- 203 (301) T pfam01406 151 EAGA--------RGEVGEGKRDPLDFALWKASK--------EGEPSW----DS-PWGKGRPGW-----HIECSAMARKY- 203 (301) T ss_pred HCCC--------CCCCCCCCCCCCHHHEECCCC--------CCCCCC----CC-CCCCCCCCC-----CEEEEHHHHHH- T ss_conf 5257--------766443325803533211456--------678775----57-777898975-----46650677874- Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHH Q ss_conf 123467654310002411000045643210001024776543-3101232333430330586010000022111000000 Q gi|255764461|r 241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEE 319 (511) Q Consensus 241 ~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~ 319 (511) + ..+.|+|++|+||++||.++||||++|+ +.++++.++.||||+++|+|||||+||+|+|.|++++ T Consensus 204 ----~---------g~~~DiH~~G~Di~~pH~~~~~A~~~a~~~~~~~~~~~h~G~l~~~G~KMSKSlGNvv~~~dl~~~ 270 (301) T pfam01406 204 ----L---------GSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKR 270 (301) T ss_pred ----C---------CCCCCEECCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCEECCCCCCCCCCHHHHHHH T ss_conf ----1---------898733027651013552419999998519995149998527987883866647873779999876 Q ss_pred CCCCCCCHHHEEECCCCCCCEECCCCCCCCHH Q ss_conf 22111211100002478730111222111001 Q gi|255764461|r 320 VGVDALRYFLVREIACGKDGFYDKDGLKKRVN 351 (511) Q Consensus 320 ~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n 351 (511) ||+|++||||+ ..++++|++||++.+.++.| T Consensus 271 ~g~d~~Ryfll-~~~y~~~~~fs~~~l~~a~n 301 (301) T pfam01406 271 YDPRILRYFLL-SVHYRSPLDFSEELLEQAKN 301 (301) T ss_pred CCHHHHHHHHH-HCCCCCCCCCCHHHHHHHHC T ss_conf 89999999998-46589987879999997239 No 34 >KOG0434 consensus Probab=100.00 E-value=0 Score=427.82 Aligned_cols=469 Identities=23% Similarity=0.345 Sum_probs=357.4 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-CCCC------------ Q ss_conf 888817997888999988322247897899999999885898036236437022799999998-3999------------ Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN-AGVT------------ 68 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~-~g~~------------ 68 (511) .++++|..--+||.|.|-+|-||+..-+..|+..||.-|.||.|----|||+||+||+-.-.| +|++ T Consensus 35 k~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~k 114 (1070) T KOG0434 35 KGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDK 114 (1070) T ss_pred CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEECHHCCCCCHHHHHHHHHHH T ss_conf 79984261369965568986214454468777777743046310220166568885010000220888789999970776 Q ss_pred ----HHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCH---- Q ss_conf ----89999999999999999808--89886747788889999999988875431022110001011334301556---- Q gi|255764461|r 69 ----TKVFVDQNSRNFRDMADVLD--ISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYND---- 138 (511) Q Consensus 69 ----p~e~~~~~~~~~~~~~~~~~--i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~---- 138 (511) ++.++-+|..+.+++..++| |+||+=++|..|...+.|.++|++|+++|++|+|-.-..|+..|.+-|+. T Consensus 115 YN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~ 194 (1070) T KOG0434 115 YNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQ 194 (1070) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEECHHHHHHHHHHHHHHHHCCCEECCEEEECCCCCCCCCCCCHHCC T ss_conf 75898899998878899999863140432688512167899999999999986675531136310333358855000003 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|255764461|r 139 -------------------------------------------------------------------------------- 138 (511) Q Consensus 139 -------------------------------------------------------------------------------- 138 (511) T Consensus 195 QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~ 274 (1070) T KOG0434 195 QNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNY 274 (1070) T ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCH T ss_conf 67656899707997312688611279874587557666047876872799998436775899729877777358643207 Q ss_pred -------------------------------------HHHCCCC------------------------------------ Q ss_conf -------------------------------------6721112------------------------------------ Q gi|255764461|r 139 -------------------------------------DEVYKGA------------------------------------ 145 (511) Q Consensus 139 -------------------------------------~~v~~~~------------------------------------ 145 (511) ++|..++ T Consensus 275 eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVD 354 (1070) T KOG0434 275 EILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVD 354 (1070) T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99986265313586457665689987315736996157274278861365077657054899997395137787888616 Q ss_pred -C-----------CC------------------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -2-----------22------------------------------22223320000345443446664444434443333 Q gi|255764461|r 146 -D-----------GQ------------------------------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESH 183 (511) Q Consensus 146 -~-----------~~------------------------------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~ 183 (511) + |+ .|..+..|+..+.-.+||.+.....++|+.-.+ . T Consensus 355 e~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~-~ 433 (1070) T KOG0434 355 ESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM-K 433 (1070) T ss_pred CCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCC-C T ss_conf 677631005422552422143999999985274665565664467335589707876342765119977999985155-4 Q ss_pred CCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------- Q ss_conf 2100067654-577541034567532343337776578642--------------------------------------- Q gi|255764461|r 184 PEFILPIERR-NEVISFVKSGLKDLSLSRKTFDWGIKIPDD--------------------------------------- 223 (511) Q Consensus 184 ~~~~~p~~~~-~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------------------------------- 223 (511) ..|+ |...| +...+||++. +||.|||.| +||+|||.. T Consensus 434 t~WV-P~~ikeKRF~NWL~nA-RDW~iSRnR-~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIp 510 (1070) T KOG0434 434 THWV-PQNIKEKRFANWLKNA-RDWNISRNR-YWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIP 510 (1070) T ss_pred CCCC-CHHHHHHHHHHHHHHH-HHCCCCCCC-CCCCCCCEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHHHCCCEECC T ss_conf 4347-7055677888887530-312110035-558885547736873579953288898840973114445414756504 Q ss_pred --C--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHHHHHHHCCCCCC Q ss_conf --2--------21464602444322001234676543100024110000456432--10001024776543310123233 Q gi|255764461|r 224 --P--------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLLSANLPLPKKVF 291 (511) Q Consensus 224 --~--------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~~~~~~~p~~i~ 291 (511) . ..||.+||++..-+++..+|+++....++..+|+|.---|-|.. ||+|+.--+.++ -|.+++++++ T Consensus 511 s~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~L-F~kppfkNvI 589 (1070) T KOG0434 511 SKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTAL-FGKPPFKNVI 589 (1070) T ss_pred CCCCCCCEEHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCHHEE T ss_conf 678876212166676564315887620211885336777644966766513200220455799999987-1798522216 Q ss_pred CCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECC-CCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHH- Q ss_conf 3430330-586010000022111000000221112111000024-7873011122211100133211022102134556- Q gi|255764461|r 292 SHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA-CGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSM- 368 (511) Q Consensus 292 ~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~-~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f- 368 (511) +||.++. ||+|||||+.|+.+|..++++||||++|+||+..-. ..+.+.|.+++..+.+...|. .|+| ..|..-- T Consensus 590 vnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~l-PW~N-syrF~~qn 667 (1070) T KOG0434 590 VNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLL-PWYN-SYRFLVQN 667 (1070) T ss_pred EEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHH-HHHHHHHH T ss_conf 701688121077766531598878988762620225665158410043344421118999876612-5567-78999988 Q ss_pred --HHHCCCCCC--C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHCCCHHHCCC- Q ss_conf --531233210--3--45558955656678999999999987750358999999999999-997886541870121699- Q gi|255764461|r 369 --ILKDYDGMI--P--TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVS-EVDRYFDAQKPWELKKTN- 440 (511) Q Consensus 369 --~~k~~~g~i--p--~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~-~~N~yi~~~~PW~l~k~d- 440 (511) ..+.-.|.. + ...+.+..|+|+++..++++.-+++.|+.|+...++-.+..|++ .+|+||..++- .++.++ T Consensus 668 ~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRr-rlkGe~G 746 (1070) T KOG0434 668 AALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRR-RLKGENG 746 (1070) T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHEEHHHH-HHCCCCC T ss_conf 887502458766633334662057899999999999999998875032415888999998754663012055-5257776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC Q ss_conf 99999999999999999999854322489999999849 Q gi|255764461|r 441 PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILF 478 (511) Q Consensus 441 ~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg 478 (511) ...+..+|.++.+++..++++|+||+||++|.||+.|. T Consensus 747 ~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk 784 (1070) T KOG0434 747 EHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLK 784 (1070) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 17889999999999999999975885488899999887 No 35 >PRK00260 cysS cysteinyl-tRNA synthetase; Validated Probab=100.00 E-value=1.8e-44 Score=347.65 Aligned_cols=342 Identities=23% Similarity=0.333 Sum_probs=239.2 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 881799788899998832224789789999999988589803623---64370227999999983999899999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) +-++|+|.|.+| +.+||||||+||.+|+++||+|..||+|.|| |+.|| +|+.+|+++|+++.|++++|.++| T Consensus 23 ~v~~Y~CGPTVY--d~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDidD---Kii~~a~~~~~~~~~~~~~~~~~f 97 (460) T PRK00260 23 KVKMYVCGPTVY--DYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDIDD---KIIKRANEEGESIKELTERYIAAF 97 (460) T ss_pred EEEEEECCCCCC--CCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH---HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 588996798488--873200030899999999999964993499982375419---999999981969999999999999 Q ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC Q ss_conf 9999980889-886747788889999999988875431022110001011334301556672111222222223320000 Q gi|255764461|r 81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW 159 (511) Q Consensus 81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~ 159 (511) .++|+.|||. +|.+.|++ +|...+..++++|.++|++|+.+..+|||+..-. .-..+.+.. .+.. ..|..++. T Consensus 98 ~~d~~~L~i~~p~~~~r~t--~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~--~YG~Ls~~~-~~~~-~~g~rv~~ 171 (460) T PRK00260 98 HEDMDALGVLRPDIEPRAT--EHIPEIIELIERLIEKGHAYEADGDVYFDVRKFP--DYGKLSGRN-LDDL-QAGARVEV 171 (460) T ss_pred HHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCC--CHHHCCCCC-CHHH-HCCCCCCC T ss_conf 9999994899985224301--4799999999999857952884787996355553--303005653-0212-11565676 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 34544344666444443444333321000676545775410345675323433377765786422214646024443220 Q gi|255764461|r 160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYL 239 (511) Q Consensus 160 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~ 239 (511) . +.-+...+|.+++.. +.|-+.|. .+ ||. |.|| T Consensus 172 ----------~-------~~K~~p~DFaLWK~~--------~~ge~~W~----SP-WG~---GRPG-------------- 204 (460) T PRK00260 172 ----------A-------EEKRDPLDFVLWKAA--------KPGEPSWD----SP-WGK---GRPG-------------- 204 (460) T ss_pred ----------C-------CCCCCCCCHHHCCCC--------CCCCCCCC----CC-CCC---CCCC-------------- T ss_conf ----------6-------344785532212788--------88887776----98-888---7987-------------- Q ss_pred CCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCH-HCCHHHHHHHH-HHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCC Q ss_conf 01234676543100024--11000045643210-00102477654-3310123233343033058601000002211100 Q gi|255764461|r 240 TTTGYLDNPDGSKAKFW--PADLHVIGKDILRF-HAIYWPAFLLS-ANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIE 315 (511) Q Consensus 240 s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~F-h~i~~pa~l~~-~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e 315 (511) |+.++.....++. +-|||-.|.|.++- |-= =.|.-.+ .|.++.+.++.+|||+++|+|||||+||+|++.| T Consensus 205 ----WHIECSaM~~~~LG~~~DIH~GG~DL~FPHHEN-EiAQs~a~~~~~~a~yW~H~g~l~i~g~KMSKSlgN~iti~d 279 (460) T PRK00260 205 ----WHIECSAMSTKYLGETFDIHGGGSDLIFPHHEN-EIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRD 279 (460) T ss_pred ----CCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC-HHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCCCCCCHHH T ss_conf ----422637999987599754762452677899610-999998864898652456510576367175035787001999 Q ss_pred HHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 00002211121110000247873011122211100133211022102134556531233210345558955656678999 Q gi|255764461|r 316 VIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCS 395 (511) Q Consensus 316 ~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~ 395 (511) ++++|+++++||+|++ +++++.++||++.+.+..++ .+++.+++.++ +... ....+ . T Consensus 280 ll~~y~~~~lR~~lLs-~hYR~pl~fs~e~L~~a~~~--l~rl~~~~~~~--------~~~~-----~~~~~-------~ 336 (460) T PRK00260 280 LLKKYDPEVLRFFLLS-AHYRSPLNFSEEALEEAKKA--LERLYNALRNL--------EPAV-----APAGG-------E 336 (460) T ss_pred HHHHHCHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHH--------HHCC-----CCCCH-------H T ss_conf 9987077999999985-46899667799999999999--99999999975--------5402-----55322-------7 Q ss_pred HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999877-50358999999999999997886541 Q gi|255764461|r 396 RVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDAQ 431 (511) Q Consensus 396 ~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~~ 431 (511) .+.+++.++| |+++++.|+..|+++++.+|++++.. T Consensus 337 ~~~~~F~~AL~DDLNTP~Ala~Lfelvk~iN~~l~~~ 373 (460) T PRK00260 337 EFEERFIEAMDDDFNTPEALAVLFELAKEINRLLDAK 373 (460) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8999999987522786999999999999999875025 No 36 >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=100.00 E-value=6.2e-42 Score=329.00 Aligned_cols=346 Identities=23% Similarity=0.293 Sum_probs=238.2 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 881799788899998832224789789999999988589803623---64370227999999983999899999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) +-++|||.|.+| ...||||||+||.+|+++||++.+||.|.|| |+-|| ||..+|.++|.++.+++++|.++| T Consensus 22 ~V~mYvCGpTVY--d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD---KIi~rA~~~g~~~~ev~~~~i~~f 96 (464) T COG0215 22 KVKMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD---KIINRAREEGLSIREVAERYIAAF 96 (464) T ss_pred EEEEEECCCCCC--CCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 168996188257--764456676520299999999982970799964666638---999999982999999999999999 Q ss_pred HHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE Q ss_conf 999998088-988674778888999999998887543102211-000101133430155667211122222222332000 Q gi|255764461|r 81 RDMADVLDI-SYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG-CYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQ 158 (511) Q Consensus 81 ~~~~~~~~i-~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~-~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~ 158 (511) .+++++||| ..|.+.|.+ +|...+.+++++|.++|++|.. ...++|++..-. .-.++.+....+. ...|..++ T Consensus 97 ~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~--~YG~LS~~~~le~-l~~gar~~ 171 (464) T COG0215 97 FEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK--DYGKLSGRDSLEE-LQAGARVE 171 (464) T ss_pred HHHHHHHCCCCCCCCCCHH--HCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHH--HHHHHCCCCCHHH-HHHCCCCC T ss_conf 9999982999986557476--47999999999999779658846982899524303--1786528987667-75135456 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 03454434466644444344433332100067654577541034567532343337776578642221464602444322 Q gi|255764461|r 159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNY 238 (511) Q Consensus 159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY 238 (511) . .+..++.-++++++..+ .|-+-|. +| || +|.||+ T Consensus 172 ~-----------------~~~Krnp~DFvLWK~sk--------~gEp~W~----SP-WG---~GRPGW------------ 206 (464) T COG0215 172 V-----------------DEEKRNPLDFVLWKAAK--------PGEPSWD----SP-WG---KGRPGW------------ 206 (464) T ss_pred C-----------------CCCCCCCHHHEEECCCC--------CCCCCCC----CC-CC---CCCCCH------------ T ss_conf 6-----------------54558800112442589--------9998877----99-88---999944------------ Q ss_pred HCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHHCCCCCCC Q ss_conf 001234676543100024--11000045643210001024776543-3-1012323334303305860100000221110 Q gi|255764461|r 239 LTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSLGNVIDPI 314 (511) Q Consensus 239 ~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~ 314 (511) +.++.....++. .-|||-.|.|.++-|---=.|...+. | .++-++++.+|||+++|+|||||+||+|++. T Consensus 207 ------HIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~ 280 (464) T COG0215 207 ------HIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVR 280 (464) T ss_pred ------HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHH T ss_conf ------68899999987089751246850255888630899987642997600586882645246727652357766799 Q ss_pred CHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 00000221112111000024787301112221110013321102210213455653123321034555895565667899 Q gi|255764461|r 315 EVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVC 394 (511) Q Consensus 315 e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l 394 (511) |++++|++.++||+|++ ++++++++||++.+.+..+. ...+-|++.|+.. ..... ... .+ T Consensus 281 d~l~~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~--l~rl~~~~~~~~~-------~~~~~--~~~--------~~ 340 (464) T COG0215 281 DLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKA--LERLYNALRRLRD-------LAGDA--ELA--------DL 340 (464) T ss_pred HHHHHCCHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH-------HCCCC--CCC--------HH T ss_conf 99865487999999998-77577656689999999999--9999999998874-------01322--211--------06 Q ss_pred HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999877-5035899999999999999788654 Q gi|255764461|r 395 SRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA 430 (511) Q Consensus 395 ~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511) .+...++.++| ++|++..|+..++++++.+|..++. T Consensus 341 ~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~ 377 (464) T COG0215 341 KEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE 377 (464) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 7899999999872258089999999999987654202 No 37 >TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=100.00 E-value=1.5e-41 Score=326.18 Aligned_cols=370 Identities=22% Similarity=0.298 Sum_probs=250.9 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEEC---CCC----------CCCCHHHHHHHHHCCCCH Q ss_conf 881799788899998832224789789999999988-589803623---643----------702279999999839998 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHR-LDGLDVLFT---TGT----------DEHGQKIAKAAQNAGVTT 69 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r-~~G~~v~~~---~g~----------D~hg~~i~~~A~~~g~~p 69 (511) +-++|||.|..| ...||||||++|.+|+++||+| ..||+|.|| |+- || ||+.+|.++|.|. T Consensus 22 ~V~~Y~CGpTVY--d~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~NiTDIGhltGdlddGDD---KIIk~A~~~~~~~ 96 (660) T TIGR00435 22 KVKMYVCGPTVY--DYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNITDIGHLTGDLDDGDD---KIIKRAREEGETV 96 (660) T ss_pred EEEEEEECCHHH--HHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCH---HHHHHHHHCCCCH T ss_conf 667997073176--21030346630257888999988758867888643120000167777504---8999987515647 Q ss_pred HHH----------------------------------------------------------------------------- Q ss_conf 999----------------------------------------------------------------------------- Q gi|255764461|r 70 KVF----------------------------------------------------------------------------- 72 (511) Q Consensus 70 ~e~----------------------------------------------------------------------------- 72 (511) .++ T Consensus 97 ~~~kendtkfnatvvdkvktalfqyinknftiqGseiktieefetWlsnadtetlklenPkfP~hvtavqnaiesitkGd 176 (660) T TIGR00435 97 EEVKENDTKFNATVVDKVKTALFQYINKNFTIQGSEIKTIEEFETWLSNADTETLKLENPKFPMHVTAVQNAIESITKGD 176 (660) T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 88740122000256778899999987520011252000367777765203310100137888521677888887642366 Q ss_pred -------------------------------HHHHHHHHHH-----HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf -------------------------------9999999999-----99980889-8867477888899999999888754 Q gi|255764461|r 73 -------------------------------VDQNSRNFRD-----MADVLDIS-YDDFIRTTEKRHHDTCRILWKKISD 115 (511) Q Consensus 73 -------------------------------~~~~~~~~~~-----~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~ 115 (511) ++++.++|.+ +|++|||- .|...|.+ +|...+.++..+|.+ T Consensus 177 s~daevafekvkdvtvPlldkelGstisnPe~~~~i~aY~~qkfndD~~aLNv~~p~~~pr~t--e~id~iie~i~~L~~ 254 (660) T TIGR00435 177 SMDAEVAFEKVKDVTVPLLDKELGSTISNPESERFIEAYFEQKFNDDLEALNVLPPDLEPRVT--EHIDEIIEFIEQLIE 254 (660) T ss_pred CCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCCHHHHHHHHHHH T ss_conf 302567666440010210101113432560168899999865578888742873884016631--124314789999986 Q ss_pred HHCCCCCC-HHHHCCCCCCCCCCHHHHCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHH Q ss_conf 31022110-001011334301556672111222222223---32000034544344666444-44344433332100067 Q gi|255764461|r 116 KGDIYKGC-YSGWYSLRDEAYYNDDEVYKGADGQYYNAQ---HNPVQWMEEEGYFFRLSAYQ-DKLLSYYESHPEFILPI 190 (511) Q Consensus 116 ~G~iy~~~-~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~---~~p~~~~~~~~~f~~l~~~~-~~l~~~~~~~~~~~~p~ 190 (511) |||+|..+ ..+||++.+-. +..+-.|.... ..-++.+...+- .+....+ +-.+ -+...+|+++. T Consensus 255 KgyAY~~~~GdVYF~v~~f~--------ksPnh~YG~Ls~Wn~~~~~~l~~g~~-~~v~~~~P~Ga~--Kr~~~DFvLWK 323 (660) T TIGR00435 255 KGYAYVSDNGDVYFDVSKFK--------KSPNHDYGKLSGWNKQSLDELEAGAR-VRVDEAKPDGAK--KRNKLDFVLWK 323 (660) T ss_pred CCCEEEECCCCEEEECCCCC--------CCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCC--CCCCCCHHHHH T ss_conf 89205306886465316778--------88888764326755554466625786-455235887533--56776502220 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCHHCC Q ss_conf 654577541034567532343337776578642221464602444322001234676543100024-------1100004 Q gi|255764461|r 191 ERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFW-------PADLHVI 263 (511) Q Consensus 191 ~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w-------~~d~~~~ 263 (511) ..+. | .|-.++=++| ||- |.|| |+.++.....++. .-|||.. T Consensus 324 ~~k~--------g-~~~E~~W~SP-WG~---GRPG------------------WHiECS~M~~~~LgltntP~~~DIH~G 372 (660) T TIGR00435 324 SAKE--------G-KDQEPKWDSP-WGK---GRPG------------------WHIECSAMVDKYLGLTNTPDQIDIHGG 372 (660) T ss_pred CCCC--------C-CCCCCCCCCC-CCC---CCCC------------------HHHHHHHHHHHHCCCCCCCCCCEECCC T ss_conf 0678--------8-7777431777-888---8881------------------589999999975135678654301348 Q ss_pred CCCCCCHHCCHHHHHHHH-HH-HHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHH-HCCCCCCCHHHEEECCCCCCCE Q ss_conf 564321000102477654-33-10123233343033058601000002211100000-0221112111000024787301 Q gi|255764461|r 264 GKDILRFHAIYWPAFLLS-AN-LPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIE-EVGVDALRYFLVREIACGKDGF 340 (511) Q Consensus 264 G~Dii~Fh~i~~pa~l~~-~~-~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~-~~g~D~lR~~l~~~~~~~~D~~ 340 (511) |.|.++-|=-==-|+-+| .| .++-++++++|||.+||+||||||||+|++.|+|+ .|.+.+|||+|++ +++++.+| T Consensus 373 G~DL~FPHHENE~Aqs~a~~gn~~~~~yW~H~G~~~id~eKMSKSLgNF~~v~D~L~q~~d~~~lR~~~l~-~HYr~pLd 451 (660) T TIGR00435 373 GVDLIFPHHENEIAQSEALFGNKQLAKYWLHNGFLMIDNEKMSKSLGNFITVRDVLKQNYDPEVLRYLLLS-VHYRSPLD 451 (660) T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHCCCCC T ss_conf 87788878778999999872898568999851778976721651555688888687427689999999876-55314567 Q ss_pred ECCCCCCCCH---HHHHHHHHHHCCHHHHHHHHHCCCCC--CC-CCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCHHHH Q ss_conf 1122211100---13321102210213455653123321--03-455589556566789999999999877-50358999 Q gi|255764461|r 341 YDKDGLKKRV---NADLANGIGNLVSRSVSMILKDYDGM--IP-TPGAFTESDESILSVCSRVLQEIRENM-QNQLIHRA 413 (511) Q Consensus 341 Fs~~~~~~~~---n~~L~~~lgN~~~R~~~f~~k~~~g~--ip-~~~~~~~~D~~ll~~l~~~~~~v~~a~-e~~~~~~A 413 (511) ||++.+.+.- ++ +-||.. .++-+...+++. .. .........+.+...+.+...++..+| +++++..| T Consensus 452 f~e~~l~~aksfe~~-----~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Eseskvhsa~~dDlN~a~A 525 (660) T TIGR00435 452 FSEELLEAAKSFENA-----LERLYK-ALRNLDTDLAYSKEFGENKDPKNVDEKEFEAAFEESESKVHSAMDDDLNTANA 525 (660) T ss_pred CCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 478899999889999-----999999-99987531034222342435664225657866432035778887505780689 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999978865 Q gi|255764461|r 414 LAQVISLVSEVDRYFD 429 (511) Q Consensus 414 l~~i~~l~~~~N~yi~ 429 (511) ++.|+++++.+|+-.+ T Consensus 526 l~vL~el~~~~N~~~~ 541 (660) T TIGR00435 526 LAVLFELAKSINKKLD 541 (660) T ss_pred HHHHHHHHHHHCCCCC T ss_conf 9999999998400157 No 38 >KOG0437 consensus Probab=100.00 E-value=1.3e-41 Score=326.52 Aligned_cols=447 Identities=23% Similarity=0.354 Sum_probs=281.0 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-------CCCH---HH- Q ss_conf 888179978889999883222478978999999998858980362364370227999999983-------9998---99- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-------GVTT---KV- 71 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-------g~~p---~e- 71 (511) .++||++|-|.||.||.|||||+.+.--.|+.+-|+|++|++|+|+-|.-|-|.||...|.++ |.+| +| T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~ 121 (1080) T KOG0437 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEE 121 (1080) T ss_pred CCCCEEEECCCCCCCCCEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH T ss_conf 66751684365021760212301002354888899984585477403335479701775799999999738999981443 Q ss_pred -------------------------HHHH-----------------------H----------HHHHHHHHHHHCCCCCC Q ss_conf -------------------------9999-----------------------9----------99999999980889886 Q gi|255764461|r 72 -------------------------FVDQ-----------------------N----------SRNFRDMADVLDISYDD 93 (511) Q Consensus 72 -------------------------~~~~-----------------------~----------~~~~~~~~~~~~i~~D~ 93 (511) .+.+ + ----.++++++|...|+ T Consensus 122 eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDW 201 (1080) T KOG0437 122 EEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDW 201 (1080) T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCE T ss_conf 14565215662011231003520577776046402699999809998881316671378884883778999984788642 Q ss_pred ---CCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCC------------------------- Q ss_conf ---74778-8889999999988875431022110001011334301556672111------------------------- Q gi|255764461|r 94 ---FIRTT-EKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKG------------------------- 144 (511) Q Consensus 94 ---~~rT~-~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~------------------------- 144 (511) |+.|. +|-+-.+|++-|.+|.+.|.|..+..-.-|||.|++-..|..-..| T Consensus 202 RRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l~~ 281 (1080) T KOG0437 202 RRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKALSS 281 (1080) T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHCCC T ss_conf 33013056654578899999998886078554760366367889855344312388878634789999841463333155 Q ss_pred ---------------------CC------CCC--CCCC-----------------------------------C------ Q ss_conf ---------------------22------222--2223-----------------------------------3------ Q gi|255764461|r 145 ---------------------AD------GQY--YNAQ-----------------------------------H------ 154 (511) Q Consensus 145 ---------------------~~------~~~--~~~~-----------------------------------~------ 154 (511) .+ +++ .++| | T Consensus 282 ~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa 361 (1080) T KOG0437 282 LKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGA 361 (1080) T ss_pred CCCCEEEEEEHHCCCCCCCCCCCEEECCCCCEEEEEECCCCEEEEEEHHHHHHCCHHHCCCCCCCCCCEEEECCHHHCCC T ss_conf 33320365410127753357642388688537768833774278860687752003431455786551144334322177 Q ss_pred -----------------------------------CCEECC------CCC-------CC-------CCCCCCCCC----- Q ss_conf -----------------------------------200003------454-------43-------446664444----- Q gi|255764461|r 155 -----------------------------------NPVQWM------EEE-------GY-------FFRLSAYQD----- 174 (511) Q Consensus 155 -----------------------------------~p~~~~------~~~-------~~-------f~~l~~~~~----- 174 (511) +|-++. ... .| -++.+.|-| T Consensus 362 ~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~ 441 (1080) T KOG0437 362 PLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEV 441 (1080) T ss_pred CCCCCCHHHHEEEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCCHHHHHH T ss_conf 44685002110142230025505775047847899802567777664152003778023024452035236633166999 Q ss_pred --------------CCCC-------------------------------------------------------------- Q ss_conf --------------4344-------------------------------------------------------------- Q gi|255764461|r 175 --------------KLLS-------------------------------------------------------------- 178 (511) Q Consensus 175 --------------~l~~-------------------------------------------------------------- 178 (511) +|.+ T Consensus 442 vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiV 521 (1080) T KOG0437 442 VCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECIV 521 (1080) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCEEE T ss_conf 99987305811678888766788987640362897144650077654678988885033256337502331357882599 Q ss_pred -----CCCC--CCCC------------CCHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CC Q ss_conf -----4333--3210------------006765457---7541034567532343337776578642221--------46 Q gi|255764461|r 179 -----YYES--HPEF------------ILPIERRNE---VISFVKSGLKDLSLSRKTFDWGIKIPDDPQY--------IM 228 (511) Q Consensus 179 -----~~~~--~~~~------------~~p~~~~~~---~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~--------~~ 228 (511) |+-+ .+.| ....+.|+- .++ .|..|..||. ..-|+.+|+|+.. +| T Consensus 522 AL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLd----WL~~wacsRs-yGLGTrlPWD~qyLvESLSDSTI 596 (1080) T KOG0437 522 ALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLD----WLGQWACSRS-YGLGTRLPWDEQYLVESLSDSTI 596 (1080) T ss_pred EECCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHCC-CCCCCCCCCCHHHHHHHCCHHHH T ss_conf 941302212472989999999986553069788877888889----9875101201-16777788767888776031289 Q ss_pred CCCH---------------------------HHHHHHHCC-------C----CCCCCCCCCCCCCCCCCHHCCCCCCCCH Q ss_conf 4602---------------------------444322001-------2----3467654310002411000045643210 Q gi|255764461|r 229 YVWI---------------------------DALTNYLTT-------T----GYLDNPDGSKAKFWPADLHVIGKDILRF 270 (511) Q Consensus 229 YVWf---------------------------Da~~gY~s~-------~----~~~~~~~~~~~~~w~~d~~~~G~Dii~F 270 (511) |--| |....|+=. + .-+.+...+|+.|+|-|+++.|||.|+- T Consensus 597 YmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~N 676 (1080) T KOG0437 597 YMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPN 676 (1080) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 99999999998776406776657789465478988786506998767784099999999763100301344234213523 Q ss_pred --------HCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEEC Q ss_conf --------001024776543310123233343033058601000002211100000022111211100002478730111 Q gi|255764461|r 271 --------HAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYD 342 (511) Q Consensus 271 --------h~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs 342 (511) |+.+|| ...||+.|.+||||++|++|||||.||+.+..+.++++|||+.|+.|+-.+.--+|.||. T Consensus 677 HLtfflynHvAl~~------~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ 750 (1080) T KOG0437 677 HLTFFLYNHVALFP------EKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFV 750 (1080) T ss_pred CEEEEEEEHHHHCC------CCCCCCCCCCCCEEEECCHHCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCCCHHH T ss_conf 13675540023154------002865311176677331220545677245999898738752045320226874343066 Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHH---HHHCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 22211100133211022102134556---53123321--03455589556566789999999999877503589999999 Q gi|255764461|r 343 KDGLKKRVNADLANGIGNLVSRSVSM---ILKDYDGM--IPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV 417 (511) Q Consensus 343 ~~~~~~~~n~~L~~~lgN~~~R~~~f---~~k~~~g~--ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i 417 (511) +....+.| -|..++ +....++. +-..-..+..|+.+.++++.++...+++|+...|+.|++.- T Consensus 751 ea~AnAaI------------LRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~G 818 (1080) T KOG0437 751 EANANAAI------------LRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYG 818 (1080) T ss_pred HHCCCHHH------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 65023799------------999999999999974377652486277789999989999999999998886799999850 Q ss_pred -HHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC Q ss_conf -999999978865418701216999999999999999999999985432248999999984988000 Q gi|255764461|r 418 -ISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADEN 483 (511) Q Consensus 418 -~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~ 483 (511) +++...-..|-.... .. .-+..+ +..+..-+.||+||+||+|+.||..++.++.. T Consensus 819 fyd~qaArD~Yrel~g-------~~-mh~dLv---~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~ 874 (1080) T KOG0437 819 FYDLQAARDMYRELCG-------EG-MHRDLV---FRFIETQTLLLAPICPHLAEYIWRTVLKKNFS 874 (1080) T ss_pred HHHHHHHHHHHHHHHC-------CC-CCHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE T ss_conf 5889988999999704-------55-318999---99999999987412527999999996168855 No 39 >PRK12418 cysteinyl-tRNA synthetase; Provisional Probab=100.00 E-value=3.8e-38 Score=300.97 Aligned_cols=338 Identities=20% Similarity=0.229 Sum_probs=228.4 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 881799788899998832224789789999999988589803623---64370227999999983999899999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) +-++|||.|.+| +..||||+|+||.+|++.||++..||+|.|| |+.|| ||..+|.++|+++.+++++|.+.| T Consensus 9 ~V~mY~CGPTVY--d~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDVDD---Kii~~A~~~g~~~~ela~~~~~~f 83 (384) T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDVDD---PLLERAARDGVDWRDLAAREIALF 83 (384) T ss_pred EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 689996688688--885423351689999999999980996499981050638---999999985939999999999999 Q ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC----HHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCC Q ss_conf 9999980889-886747788889999999988875431022110----00101133430155667211122222222332 Q gi|255764461|r 81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGC----YSGWYSLRDEAYYNDDEVYKGADGQYYNAQHN 155 (511) Q Consensus 81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~----~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (511) .++|++|||. .|.+.|.+ +|...+.++.++|.++|++|+.+ ..+||++..-. .+|. . ++. T Consensus 84 ~~d~~~Lnv~~p~~~praT--e~I~~ii~~I~~Li~~G~AY~~~~~~~G~VYFdv~~~~-------~YG~---l---s~~ 148 (384) T PRK12418 84 REDMAALRVLPPRDYVGAV--ESIPEVVELVEKLLASGAAYVVDDPEYGDVYFSVDATP-------QFGY---E---SGY 148 (384) T ss_pred HHHHHHCCCCCCCEECCCC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCHH-------HHCC---C---CCC T ss_conf 9999982999995003211--37999999999999679557756888886899952422-------1145---0---159 Q ss_pred CE-ECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 00-003---45443446664444434443333210006765457754103456753234333777657864222146460 Q gi|255764461|r 156 PV-QWM---EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVW 231 (511) Q Consensus 156 p~-~~~---~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVW 231 (511) .. +.. .+.. .. .+. ...+...+|.+++..+ .|-+-| +.+ || +|.|| T Consensus 149 ~~~~~~~~~~e~~-----~~-~~~--~~Kr~p~DFaLWK~~~--------~gEp~W----~SP-WG---~GRPG------ 198 (384) T PRK12418 149 DRETMLELFAERG-----GD-PDR--PGKRDPLDALLWRAAR--------PGEPSW----PSP-FG---PGRPG------ 198 (384) T ss_pred CHHHHHHHHHHCC-----CC-CCC--CCCCCCCCEEEECCCC--------CCCCCC----CCC-CC---CCCCC------ T ss_conf 9899987753315-----77-543--3578866603557577--------778887----699-88---80884------ Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHH Q ss_conf 2444322001234676543100024--11000045643210001024776543-3-101232333430330586010000 Q gi|255764461|r 232 IDALTNYLTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSL 307 (511) Q Consensus 232 fDa~~gY~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~ 307 (511) |+.++.....++. +-|||-.|.|.++-|---=.|.-.++ | .++-+.++.+|||+++|+|||||+ T Consensus 199 ------------WHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~~g~~~~a~yW~H~g~l~~~geKMSKSl 266 (384) T PRK12418 199 ------------WHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSR 266 (384) T ss_pred ------------HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCEEEECCEECCCCC T ss_conf ------------30565899998759976784686256588835499999986589748788860042668886745668 Q ss_pred CCCCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 022111000000-2211121110000247873011122211100133211022102134556531233210345558955 Q gi|255764461|r 308 GNVIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTES 386 (511) Q Consensus 308 GN~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~ 386 (511) ||+|++.+++++ |+++++||+|++ .+++++++||++.+.+..+. +.|....+.. +. . .. T Consensus 267 GN~i~i~dl~~~g~~p~~~R~~lL~-~hYR~~l~fs~~~l~~A~~~---------l~r~~~a~~~------~~--~-~~- 326 (384) T PRK12418 267 GNLVFVSRLRAAGVDPAAIRLALLA-GHYRSDREWTDAVLAEAEAR---------LARWRAATAL------PA--G-PD- 326 (384) T ss_pred CCEEEHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHC------CC--C-CC- T ss_conf 8714699998638987999999970-56799768899999999999---------9999998716------67--8-86- Q ss_pred HHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6566789999999999877-5035899999999999999788654 Q gi|255764461|r 387 DESILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA 430 (511) Q Consensus 387 D~~ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511) ...+.+++.++| |+++.+.|+..++++++.+|+|... T Consensus 327 -------~~~~~~~~~~al~DDlNTP~Ala~l~~l~~~~n~~~~~ 364 (384) T PRK12418 327 -------AADVVARVREYLADDLDTPGALAAVDGWATDALEYGGH 364 (384) T ss_pred -------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf -------68899999999874265589999999999999732688 No 40 >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. Probab=100.00 E-value=7.7e-38 Score=298.75 Aligned_cols=338 Identities=19% Similarity=0.234 Sum_probs=225.2 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 881799788899998832224789789999999988589803623---64370227999999983999899999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) +-++|||.|.+| +..||||+|+||.+|+++||++.+||+|.|| |+.|| ||+.+|.++|+++.|++++|.+.| T Consensus 36 ~v~mYvCGpTVY--d~~HiGhaR~~v~fD~l~R~L~~~G~~V~~v~NiTDiDD---Kii~~A~~~g~~~~ela~~y~~~f 110 (411) T TIGR03447 36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDD---PLFERAERDGVDWRELGTSQIDLF 110 (411) T ss_pred EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 368996588478--888622341689999999999983985589961465425---999999882989999999999999 Q ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH----HHHCCCCC-CCCCCHHHHCCCCCCCCCCCCC Q ss_conf 9999980889-8867477888899999999888754310221100----01011334-3015566721112222222233 Q gi|255764461|r 81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCY----SGWYSLRD-EAYYNDDEVYKGADGQYYNAQH 154 (511) Q Consensus 81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~----~~~y~~~~-~~~~~~~~v~~~~~~~~~~~~~ 154 (511) .++|++|||. .|.+.|.+ +|...+.++.++|.++|++|+.+. .+||+... ..| |. ...... T Consensus 111 ~~d~~~Lni~~p~~~praT--e~I~~ii~~I~~Li~kG~AY~~~~~~~gdVYFdv~~~~~y--------G~---Ls~~~~ 177 (411) T TIGR03447 111 REDMEALRVLPPRDYIGAV--ESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQF--------GY---ESGYDR 177 (411) T ss_pred HHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCHHHH--------CC---CCCCCH T ss_conf 9999974999998776743--4799999999999868967982798777579872540110--------65---225799 Q ss_pred CCE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 200-0034544344666444443444333321000676545775410345675323433377765786422214646024 Q gi|255764461|r 155 NPV-QWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWID 233 (511) Q Consensus 155 ~p~-~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfD 233 (511) ..+ +...+.. ....+. -.+...+|.+++..+ .|-+-| +.+ || +|.|| T Consensus 178 ~~~~~~~~~~~-----~~~~~~---~Kr~p~DFaLWK~~k--------~gep~W----~SP-WG---~GRPG-------- 225 (411) T TIGR03447 178 ATMLELFAERG-----GDPDRP---GKRDPLDALLWRAAR--------EGEPSW----DSP-FG---PGRPG-------- 225 (411) T ss_pred HHHHHHHHHCC-----CCCCCC---CCCCHHHHHHHCCCC--------CCCCCC----CCC-CC---CCCCC-------- T ss_conf 99987751114-----774200---246735677714788--------888876----699-88---86883-------- Q ss_pred HHHHHHCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHHCC Q ss_conf 44322001234676543100024--11000045643210001024776543-3-10123233343033058601000002 Q gi|255764461|r 234 ALTNYLTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSLGN 309 (511) Q Consensus 234 a~~gY~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~GN 309 (511) |+.++.....++. .-|||-.|.|.++-|---=.|.-.++ | .++-+.++.+|||+++|+|||||+|| T Consensus 226 ----------WHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~~g~~~~a~yWmH~g~l~~~geKMSKSlGN 295 (411) T TIGR03447 226 ----------WHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGN 295 (411) T ss_pred ----------HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHECCEEEECCEECCCCCCC T ss_conf ----------7799999999875997578788603578885309999998668873766765300231287055666887 Q ss_pred CCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 2111000000-221112111000024787301112221110013321102210213455653123321034555895565 Q gi|255764461|r 310 VIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDE 388 (511) Q Consensus 310 ~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~ 388 (511) ++++.+++++ |.+.++||+|++ ++++++++||++.+.+.-+. +.|..+.+.. .+. . T Consensus 296 ~~ti~dl~~~g~~p~~iR~~lL~-~HYRspl~fs~~~L~~A~~~---------l~r~~~a~~~-----~~~-----~--- 352 (411) T TIGR03447 296 LVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEAEAR---------LARWRAALAA-----TDA-----P--- 352 (411) T ss_pred EEEHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHC-----CCC-----C--- T ss_conf 25799998649989999999971-44899768898999999999---------9999998726-----677-----5--- Q ss_pred HHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 66789999999999877-50358999999999999997886 Q gi|255764461|r 389 SILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYF 428 (511) Q Consensus 389 ~ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi 428 (511) ....+++++.++| ++++...|+..|+++++.+|+.. T Consensus 353 ----~~~~~~~~~~~Al~DDlNTp~Ala~l~~~~~~~n~~~ 389 (411) T TIGR03447 353 ----DATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSG 389 (411) T ss_pred ----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC T ss_conf ----2267999999998601672999999999999998436 No 41 >KOG2007 consensus Probab=100.00 E-value=1.2e-33 Score=267.69 Aligned_cols=359 Identities=22% Similarity=0.269 Sum_probs=243.9 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEECCC---CCCCCHHHHHHHHH--CCCCHHHHHH--- Q ss_conf 881799788899998832224789789999999988-58980362364---37022799999998--3999899999--- Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHR-LDGLDVLFTTG---TDEHGQKIAKAAQN--AGVTTKVFVD--- 74 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r-~~G~~v~~~~g---~D~hg~~i~~~A~~--~g~~p~e~~~--- 74 (511) +-+.|+|.|..| ..-|||||++||.+||+.|+++ .-||+|.||.+ .|| +|+.+|.+ .+..|..+.+ T Consensus 55 ~v~wY~CGpTvY--D~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD---KII~RAr~~~m~e~~~~l~~~F~ 129 (586) T KOG2007 55 KVTWYICGPTVY--DSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD---KIIKRARKEEMGEKPLSLSERFC 129 (586) T ss_pred EEEEEEECCCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHHHHHHHHCCCHHHHHHHHH T ss_conf 578997068013--4122101466622999999999972863699943552048---99987655230234121899888 Q ss_pred HHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC Q ss_conf 999999999998088-9886747788889999999988875431022110001011334301556672111222222223 Q gi|255764461|r 75 QNSRNFRDMADVLDI-SYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQ 153 (511) Q Consensus 75 ~~~~~~~~~~~~~~i-~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (511) .|.++|.++|.+|++ .+|..+|.+ +|...+..+++++.++|+.|.....+||+...-..... .+. |+. + T Consensus 130 ~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~Yg-KL~----G~~-~-- 199 (586) T KOG2007 130 YYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYG-KLV----GQR-K-- 199 (586) T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHH--HCHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCHHH-HHC----CCH-H-- T ss_conf 8899999899980889985301454--24478999999998478536527808986444654135-431----715-3-- Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 32000034544344666444443444333321000676545775410345675323433377765786422214646024 Q gi|255764461|r 154 HNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWID 233 (511) Q Consensus 154 ~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfD 233 (511) ...+.+. ...+.- ..+..++.+++.. +.|-+-|. .+ || +|.||+- T Consensus 200 ----~~~~gEg------~l~ds~---KR~p~DFALWKAs--------K~gEP~We----SP-WG---~GRPGWH------ 244 (586) T KOG2007 200 ----NLQEGEG------VLSDSR---KRSPADFALWKAS--------KPGEPSWE----SP-WG---KGRPGWH------ 244 (586) T ss_pred ----HCCCCCC------CCCCCC---CCCHHHHHHHHHC--------CCCCCCCC----CC-CC---CCCCCCE------ T ss_conf ----2346767------544346---7880245666404--------89998887----98-88---9999745------ Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCC--CCHHCCCCCCCCHHCCHHHHHHHHH--HHHCCCCCCCCCCEEECCCCCCHHHCC Q ss_conf 443220012346765431000241--1000045643210001024776543--310123233343033058601000002 Q gi|255764461|r 234 ALTNYLTTTGYLDNPDGSKAKFWP--ADLHVIGKDILRFHAIYWPAFLLSA--NLPLPKKVFSHGFILHKGEKISKSLGN 309 (511) Q Consensus 234 a~~gY~s~~~~~~~~~~~~~~~w~--~d~~~~G~Dii~Fh~i~~pa~l~~~--~~~~p~~i~~~g~l~~~G~KMSKS~GN 309 (511) .++......+.. -|||-.|.|..+-|-===.|...|. ...|-+.++.+|||+++|+|||||++| T Consensus 245 ------------IECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkN 312 (586) T KOG2007 245 ------------IECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKN 312 (586) T ss_pred ------------EEEHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCHHHHHHCC T ss_conf ------------64077777762655420168504337875208888888763875512578757366511104333204 Q ss_pred CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 21110000002211121110000247873011122211100133211022102134556531233210345558955656 Q gi|255764461|r 310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDES 389 (511) Q Consensus 310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ 389 (511) +|+.+|++++|+|+++|+++++ ..+.+++|||...+.... .|...+.||+.-+..+ .+ +..+ ...+.+.+.. T Consensus 313 FiTIke~Lk~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~--q~e~~~~~ff~~~~al-~~---~~~~-~~~~~~~e~~ 384 (586) T KOG2007 313 FITIKEALKKYSPRQLRLAFLL-HQWRSPLDYSDSTMEQAL--QLEKSLNNFFLDVKAL-LR---GAKP-FEKLSEKEAE 384 (586) T ss_pred CEEHHHHHHHCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHH-HH---CCCH-HHCCCHHHHH T ss_conf 1439999976398999999998-775676784388999999--9999999999999999-82---5420-2103858999 Q ss_pred HHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 6789999999999877-503589999999999999978865418 Q gi|255764461|r 390 ILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDAQK 432 (511) Q Consensus 390 ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~~~ 432 (511) +...+......+..++ ++++.+.+++.+.++++.+|.||.... T Consensus 385 l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~ 428 (586) T KOG2007 385 LLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG 428 (586) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99860037899999987424518899999998734338888731 No 42 >cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Probab=99.96 E-value=3.6e-29 Score=234.69 Aligned_cols=189 Identities=26% Similarity=0.360 Sum_probs=149.7 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 88179978889999883222478978999999998858980362364---370227999999983999899999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG---TDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g---~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) +-++|+|.|.+| +.+||||+|+||.+|+++||++..|++|.||.. -|| ||..+|.++|+++.|++++|.++| T Consensus 20 ~V~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDD---KII~~A~~~~~~~~ela~~y~~~f 94 (213) T cd00672 20 LVRMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDD---KIIKRAREEGLSIKEVAEYYTAEF 94 (213) T ss_pred EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---HHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 788997899688--998765342576899999999963993589997267518---999999983999999999999999 Q ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC Q ss_conf 9999980889-886747788889999999988875431022110001011334301556672111222222223320000 Q gi|255764461|r 81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW 159 (511) Q Consensus 81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~ 159 (511) .+++++|||. +|.+.|. T Consensus 95 ~~d~~~Lni~~p~~~Pra-------------------------------------------------------------- 112 (213) T cd00672 95 FEDMKALNVLPPDVYPRV-------------------------------------------------------------- 112 (213) T ss_pred HHHHHHHCCCCCCCCCCE-------------------------------------------------------------- T ss_conf 999998289999813545-------------------------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 34544344666444443444333321000676545775410345675323433377765786422214646024443220 Q gi|255764461|r 160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYL 239 (511) Q Consensus 160 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~ 239 (511) |-| .- +.+ T Consensus 113 -----------------------------------------------WHi---------EC-------------saM--- 120 (213) T cd00672 113 -----------------------------------------------WHI---------EC-------------SAM--- 120 (213) T ss_pred -----------------------------------------------EEE---------EC-------------HHH--- T ss_conf -----------------------------------------------201---------45-------------999--- Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHH Q ss_conf 0123467654310002411000045643210001024776543-310123233343033058601000002211100000 Q gi|255764461|r 240 TTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIE 318 (511) Q Consensus 240 s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~ 318 (511) +.+++.+ +-|+|-.|.|.++-|---=-|.-.++ |.++-+.++.+|||+++|+|||||+||++++.|+++ T Consensus 121 -~~~~lg~---------~~DIH~GG~DL~FPHHeNE~AQs~a~~~~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~ 190 (213) T cd00672 121 -SMKYLGE---------TFDIHGGGVDLIFPHHENEIAQSEAAFGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK 190 (213) T ss_pred -HHHHHCC---------CEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHCCCEECCCCCCEEEHHHHHH T ss_conf -8988289---------625634763565899704999988865899601000345787275640345787526999984 Q ss_pred HCCCCCCCHHHEEECCCCCCCEEC Q ss_conf 022111211100002478730111 Q gi|255764461|r 319 EVGVDALRYFLVREIACGKDGFYD 342 (511) Q Consensus 319 ~~g~D~lR~~l~~~~~~~~D~~Fs 342 (511) +|+++++||+|++ +++++.++|| T Consensus 191 ~~~~~~~R~~lls-~hYR~~l~fs 213 (213) T cd00672 191 KYDPEVLRLALLS-SHYRSPLDYS 213 (213) T ss_pred CCCHHHHHHHHHH-CCCCCCCCCC T ss_conf 3999999999982-7378987899 No 43 >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. Probab=99.93 E-value=4.8e-25 Score=204.19 Aligned_cols=128 Identities=41% Similarity=0.774 Sum_probs=124.0 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 01332110221021345565312332103455589556566789999999999877503589999999999999978865 Q gi|255764461|r 350 VNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFD 429 (511) Q Consensus 350 ~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~ 429 (511) +|+||++++||+++|+.+|+.++++|.+|..+..++.|.++++++.+..+++.++||++++++|++.+|++++.+|+|++ T Consensus 1 ~N~~L~~~~GNLv~Rv~~~~~k~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~ 80 (129) T cd07957 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID 80 (129) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98888879977999999999982799799987776413999999999999999999852499999999999999999999 Q ss_pred HHCCCHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 4187012169-99999999999999999999985432248999999984 Q gi|255764461|r 430 AQKPWELKKT-NPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477 (511) Q Consensus 430 ~~~PW~l~k~-d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L 477 (511) .++||+++|+ ++++++++|+++++++|.+++||+||||++|++||++| T Consensus 81 ~~~PW~l~K~~~~~~~~~vl~~~l~~~~~l~ilL~P~mP~~s~~i~~~L 129 (129) T cd07957 81 ETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129) T ss_pred HCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC T ss_conf 6587988823029999999999999999999999757018999999719 No 44 >PRK12451 arginyl-tRNA synthetase; Reviewed Probab=99.91 E-value=9.6e-22 Score=179.79 Aligned_cols=332 Identities=16% Similarity=0.202 Sum_probs=202.1 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH------------------- Q ss_conf 8888179978889999883222478978999999998858980362364370227999999------------------- Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA------------------- 62 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A------------------- 62 (511) .+.+++.|--.=|-|+||||+||+|+.+.+|.++|-++..||+|.=.---.|.|..|..-+ T Consensus 110 ~~~k~v~vEfvSaNPtgpLHVGH~R~aiiGdsLariL~~~G~~V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 189 (562) T PRK12451 110 GCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRE 189 (562) T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHH T ss_conf 89987999852899998862422462799999999999869859999974773089999999999854401124675789 Q ss_pred --------HH---CC----------------CCHH------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH Q ss_conf --------98---39----------------9989------999999999999999808898867477888899999999 Q gi|255764461|r 63 --------QN---AG----------------VTTK------VFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL 109 (511) Q Consensus 63 --------~~---~g----------------~~p~------e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~ 109 (511) .+ .+ .+++ .+.+...+.++++++.+||.||.|. .+..+...+.++ T Consensus 190 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~--~Es~~~~~~~~~ 267 (562) T PRK12451 190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNNLMEDF 267 (562) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE--CHHHHHHHHHHH T ss_conf 999999999865048006899999999876689999999999999999999999999297201452--324451247899 Q ss_pred HHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 88875431022110001011334301556672111222222223320000345443446664444434443333210006 Q gi|255764461|r 110 WKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP 189 (511) Q Consensus 110 ~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p 189 (511) +..|.++|++|+.+...+.+. +++ T Consensus 268 i~~L~~~g~~~e~dGA~~~~~---------------------------------------~~~----------------- 291 (562) T PRK12451 268 IGILEEHDLLEESEGALVVNL---------------------------------------EEE----------------- 291 (562) T ss_pred HHHHHHCCCEEECCCCEECCC---------------------------------------CHH----------------- T ss_conf 999997797894799743587---------------------------------------131----------------- Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC Q ss_conf 76545775410345675323433377765786422214646024443220012346765431000241100004564321 Q gi|255764461|r 190 IERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR 269 (511) Q Consensus 190 ~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~ 269 (511) |.+|.-|-|.. |. +.|..-| |+| ..+-.+..+ + -.-+.+.|-|. T Consensus 292 -------------g~~~~vl~ksD---Gt--------~tY~t~D--iA~---~~~k~~~~~-~----d~~I~V~gadh-- 335 (562) T PRK12451 292 -------------GMPPCLIRKSD---GA--------TIYATRD--LTA---ALYRQNTFG-F----DKALYVVGPEQ-- 335 (562) T ss_pred -------------CCCCEEEECCC---CC--------CEEECCH--HHH---HHHHHHHCC-C----CEEEEEECCCH-- T ss_conf -------------27863899189---97--------2131664--789---999987309-9----75899956747-- Q ss_pred HHCCHHH---HHHHHHHHHCCCCC--CCCCCEEECCCCCCHHHCCCCCCCCHHHH------------------------- Q ss_conf 0001024---77654331012323--33430330586010000022111000000------------------------- Q gi|255764461|r 270 FHAIYWP---AFLLSANLPLPKKV--FSHGFILHKGEKISKSLGNVIDPIEVIEE------------------------- 319 (511) Q Consensus 270 Fh~i~~p---a~l~~~~~~~p~~i--~~~g~l~~~G~KMSKS~GN~I~~~e~l~~------------------------- 319 (511) ..+++ +.+.++|+..++.+ +..|+|..+|+||||.+||+|+++|++++ T Consensus 336 --~~~~~rv~a~l~~lg~~~~~~~~hv~~~~v~~~g~kMStR~G~~v~l~dll~e~~~~a~~~~~~r~~~~~~~~~ia~~ 413 (562) T PRK12451 336 --SLHFNQFFTVLKKLGYTWVDGMEHVPFGFILKDGKKMSTRKGRVILLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQ 413 (562) T ss_pred --HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf --679999999999749975455068988998748863020578756899999999999999987527771328999998 Q ss_pred CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCH-HHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 22111211100002478730111222111001332110221021-3455653123-321034555895565667899999 Q gi|255764461|r 320 VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVS-RSVSMILKDY-DGMIPTPGAFTESDESILSVCSRV 397 (511) Q Consensus 320 ~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~-R~~~f~~k~~-~g~ip~~~~~~~~D~~ll~~l~~~ 397 (511) .|.|++||++++. ...++.+|+++.+...-++ -+.|...++ |+.+.+.|.- +..........+.+..++..+... T Consensus 414 VG~~Airy~~L~~-~~~~~~~FD~d~~~~~~~~--~~PYiQYAhARi~SIlrk~~~~~~~~~~~l~~~~e~~Li~~L~~f 490 (562) T PRK12451 414 VGVGAVIFHDLKN-ERMHNIEFSLENMLKFEGE--TGPYVQYTHARACSILRKESVEFETCTFALKDDHSWSVVKLLNKF 490 (562) T ss_pred HCCCHHHHHHHHC-CCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 5311301344431-6787776789999742578--873699999999999974457755433446997999999999988 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999877503589999999999999978865418 Q gi|255764461|r 398 LQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQK 432 (511) Q Consensus 398 ~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~ 432 (511) +..+..+.++++.+..+..+.++++..|.|.+..+ T Consensus 491 p~vv~~aa~~~~Ph~l~~Yl~~LA~~Fh~fY~~~~ 525 (562) T PRK12451 491 PQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR 525 (562) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999849937999999999999999980687 No 45 >PRK01611 argS arginyl-tRNA synthetase; Reviewed Probab=99.90 E-value=3e-21 Score=176.14 Aligned_cols=335 Identities=23% Similarity=0.317 Sum_probs=201.0 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH-------------------- Q ss_conf 888179978889999883222478978999999998858980362364370227999999-------------------- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA-------------------- 62 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A-------------------- 62 (511) +++|++|--.=|-|+||||+||+|+.+.+|.++|-++..||+|.=.---.|.|+.+..-+ T Consensus 116 ~~~kv~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~l~~~Y 195 (570) T PRK01611 116 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLAASLELEEAAAKGLSDLERRY 195 (570) T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 99779998448999998623358878999999999998399079999978742799999999999604888706679999 Q ss_pred ---H------------------HCCCCH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHHHHHH Q ss_conf ---9------------------839998------99999999999999998088988674778888999-9999988875 Q gi|255764461|r 63 ---Q------------------NAGVTT------KVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHD-TCRILWKKIS 114 (511) Q Consensus 63 ---~------------------~~g~~p------~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~-~~~~~~~~l~ 114 (511) . +++-++ +..++...+.++++++++||.||.|..- +..+.. .+..++..|. T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~l~~l~I~fD~~~~E-s~~~~~~~i~~v~~~L~ 274 (570) T PRK01611 196 REAKKEPDEDPEEYAGEYIVKLAAPGDEELEELWRKAVDISLDEIKEDLDRLGVKFDVFFSE-SSLYNDGKVEEVVEDLK 274 (570) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHCCCHHHHHHHHH T ss_conf 99850346585455789999987179888999999999999999999999748764421266-88985774499999998 Q ss_pred HHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 43102211000101133430155667211122222222332000034544344666444443444333321000676545 Q gi|255764461|r 115 DKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRN 194 (511) Q Consensus 115 ~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 194 (511) ++|++|+.+...+ ++++++.+. T Consensus 275 ~~~~~~e~dGa~~---------------------------------------~~~~~~g~d------------------- 296 (570) T PRK01611 275 EKGLLYESDGALW---------------------------------------VRLTEFGDD------------------- 296 (570) T ss_pred HCCCEEECCCCEE---------------------------------------EECHHCCCC------------------- T ss_conf 6795893189689---------------------------------------942110677------------------- Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-CHHCC Q ss_conf 77541034567532343337776578642221464602444322001234676543100024110000456432-10001 Q gi|255764461|r 195 EVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL-RFHAI 273 (511) Q Consensus 195 ~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii-~Fh~i 273 (511) .+|+-+-|.. |.+ .|.=-| |+| ..+-.+ .+ +. .-+.+.|-|.. +|..+ T Consensus 297 ---------~~~~vl~ksD---Gt~--------~Y~t~D--iAy---~~~K~~-~~-~d----~~I~V~g~dq~~hf~~l 345 (570) T PRK01611 297 ---------EKDRVLQKSD---GTY--------TYFTTD--IAY---HLYKFE-RG-FD----RVIYVVGADHHGHFKRL 345 (570) T ss_pred ---------CCCEEEEECC---CCC--------EECHHH--HHH---HHHHHH-HC-CC----EEEEEECCCHHHHHHHH T ss_conf ---------7784899159---960--------001468--999---999985-17-88----38999457588899999 Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCE-E---ECCCCCCHHHCCCCCCCCHHHH----------------------CCCCCCC Q ss_conf 024776543310123-23334303-3---0586010000022111000000----------------------2211121 Q gi|255764461|r 274 YWPAFLLSANLPLPK-KVFSHGFI-L---HKGEKISKSLGNVIDPIEVIEE----------------------VGVDALR 326 (511) Q Consensus 274 ~~pa~l~~~~~~~p~-~i~~~g~l-~---~~G~KMSKS~GN~I~~~e~l~~----------------------~g~D~lR 326 (511) + +.+..+|+.+.+ .++.|.++ + .+|.||||.+||+|+++|++++ .|.|++| T Consensus 346 -~-~~l~~lG~~~~~~~~l~h~~~~lv~~~~~~kMStR~G~~v~L~dlldea~~~a~~~~~~~~e~~~~ia~~Vg~~Air 423 (570) T PRK01611 346 -K-AALKALGYDPEKLEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVERARELVEESEEEKEEIAKAVGIDAVR 423 (570) T ss_pred -H-HHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH T ss_conf -9-99998699963344799999875436867644246787458999999999999987633776788999763410402 Q ss_pred HHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCCC-C--C-CCCHHHHHHHHHHHHHHHHH Q ss_conf 110000247873011122211100133211022102-13455653123321034-5--5-58955656678999999999 Q gi|255764461|r 327 YFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIPT-P--G-AFTESDESILSVCSRVLQEI 401 (511) Q Consensus 327 ~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip~-~--~-~~~~~D~~ll~~l~~~~~~v 401 (511) |++++ ....++.+|+|+.+...-.. -+.|...+ .|+.+.+.|.-...... . . ..++.+..++..+...+..+ T Consensus 424 y~~L~-~~~~~~~~Fd~d~~l~~~g~--t~~YiQYa~AR~~SIlrK~~~~~~~~~~~~~~l~~~~E~~Li~~l~~fp~vv 500 (570) T PRK01611 424 YFDLS-RSRDSDYDFDLDLALSFEGN--NPPYVQYAHARICSILRKAAEEGLAAAADLSLLTEEEELELIKKLAEFPEVV 500 (570) T ss_pred HHHHC-CCCCCCCEECHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 64440-68888822268998632389--8257889999999999863123454434333469989999999998879999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9877503589999999999999978865418 Q gi|255764461|r 402 RENMQNQLIHRALAQVISLVSEVDRYFDAQK 432 (511) Q Consensus 402 ~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~ 432 (511) ..+.++++.+..+..+++++...|.|.+..+ T Consensus 501 ~~a~~~~~Ph~l~~YL~~La~~Fn~fY~~~~ 531 (570) T PRK01611 501 ESAAEELEPHRIANYLYELAGAFHSFYNACP 531 (570) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999968818999999999999999985198 No 46 >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=99.88 E-value=2.2e-20 Score=169.78 Aligned_cols=345 Identities=22% Similarity=0.277 Sum_probs=205.2 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC----------------------------CCC Q ss_conf 8881799788899998832224789789999999988589803623643----------------------------702 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT----------------------------DEH 54 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~----------------------------D~h 54 (511) +.+|++|--.=|-|+||+||||+|+.+.+|.++|-++..||+|.-.--- |.+ T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577) T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577) T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 99879998747999998523323536889999999998399766786678579999999999999554101377772068 Q ss_pred -CHHH-HHH--HHH-CCC---------------CHH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH Q ss_conf -2799-999--998-399---------------989-----999999999999999808898867477888899999999 Q gi|255764461|r 55 -GQKI-AKA--AQN-AGV---------------TTK-----VFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL 109 (511) Q Consensus 55 -g~~i-~~~--A~~-~g~---------------~p~-----e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~ 109 (511) |..+ ..+ +++ .+. .+. .+++...+.+++++.++||+||.|..-++......+.++ T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v 274 (577) T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV 274 (577) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCHHHH T ss_conf 89999999999974846126788999998864775789999999999999999999929530013234265526649999 Q ss_pred HHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 88875431022110001011334301556672111222222223320000345443446664444434443333210006 Q gi|255764461|r 110 WKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP 189 (511) Q Consensus 110 ~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p 189 (511) ...|.++|++|+. .|..|.. ++++. ++ T Consensus 275 v~~L~~~~~~~e~--~GA~~vd-------------------------------------l~~~~----~~---------- 301 (577) T COG0018 275 VEDLEEKGLLYED--DGALVVD-------------------------------------LLKFK----KF---------- 301 (577) T ss_pred HHHHHHCCCEEEE--CCEEEEE-------------------------------------HHHHH----HC---------- T ss_conf 9999866977600--9958986-------------------------------------43211----11---------- Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC Q ss_conf 76545775410345675323433377765786422214646024443220012346765431000241100004564321 Q gi|255764461|r 190 IERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR 269 (511) Q Consensus 190 ~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~ 269 (511) +..+|.-+.|.. |. ++|.=-| |+| ..|-.+ ..+ -.-+.++|-|..- T Consensus 302 ------------gd~~~~vl~KSD---Gt--------~lY~t~D--IAy---~~~K~~--~~~----d~~IyV~gadq~~ 347 (577) T COG0018 302 ------------GDDKDRVLQKSD---GT--------YLYFTRD--IAY---HLYKFE--RGF----DKLIYVLGADQHG 347 (577) T ss_pred ------------CCCCCEEEEECC---CC--------EEEEHHH--HHH---HHHHHH--CCC----CEEEEEECCCCHH T ss_conf ------------687772899769---97--------0542538--999---999973--699----8899996786244 Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCC---EEE-CCCCCCHHHCCCCCCCCHHHHCC----------------------CC Q ss_conf 00010247765433101232333430---330-58601000002211100000022----------------------11 Q gi|255764461|r 270 FHAIYWPAFLLSANLPLPKKVFSHGF---ILH-KGEKISKSLGNVIDPIEVIEEVG----------------------VD 323 (511) Q Consensus 270 Fh~i~~pa~l~~~~~~~p~~i~~~g~---l~~-~G~KMSKS~GN~I~~~e~l~~~g----------------------~D 323 (511) +-..+| +.|...|+.+++.++.|.. +.. +|.||||..|++|+.+|+++..+ .| T Consensus 348 ~~~ql~-~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~ 426 (577) T COG0018 348 HFKQLK-AVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGID 426 (577) T ss_pred HHHHHH-HHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999-9999846998656189997752577877634224886578999999998876667654321157777775240 Q ss_pred CCCHHHEEECCCCCCCEECCCCCCCCH-HHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCC----CCC-HHHHHHHHHHHH Q ss_conf 121110000247873011122211100-1332110221021-345565312332103455----589-556566789999 Q gi|255764461|r 324 ALRYFLVREIACGKDGFYDKDGLKKRV-NADLANGIGNLVS-RSVSMILKDYDGMIPTPG----AFT-ESDESILSVCSR 396 (511) Q Consensus 324 ~lR~~l~~~~~~~~D~~Fs~~~~~~~~-n~~L~~~lgN~~~-R~~~f~~k~~~g~ip~~~----~~~-~~D~~ll~~l~~ 396 (511) ++||++++. ...++..|+|+.+..-- |+ ..|...++ |+.+...|.-....+... .++ ..+..|+.++.+ T Consensus 427 Avry~~l~~-~~~~~~~Fd~d~~lsfegNt---~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~ 502 (577) T COG0018 427 AVRYADLSR-SRDKDYVFDWDKALSFEGNT---APYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLE 502 (577) T ss_pred HHHHHHHHC-CCCCCCEEEHHHHHHCCCCC---CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHH T ss_conf 678998862-89999475399997445997---21599999999999985444345533222101068279999999998 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH Q ss_conf 999999877503589999999999999978865418701216999 Q gi|255764461|r 397 VLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP 441 (511) Q Consensus 397 ~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~ 441 (511) .+.-+.++.++++.+..+..+++++...|+|.+... .+..++. T Consensus 503 fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~--Vl~~~~~ 545 (577) T COG0018 503 FPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP--VLGAENE 545 (577) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCH T ss_conf 499999999856955999999999999999985087--7789957 No 47 >cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Probab=99.83 E-value=1e-20 Score=172.11 Aligned_cols=140 Identities=34% Similarity=0.540 Sum_probs=119.7 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980 Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511) Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511) +||.+.|||||+|||||+++++..|+++|+. +|.++.++||||++++..|.+.+..++++++++.++++++++ T Consensus 1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 73 (142) T cd00802 1 VITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKEGKLPKEEVEENIEEIKEDLK-- 73 (142) T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCE-- T ss_conf 9141488989964188999999999999981-----998999865799200116788444889999999999998652-- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCC Q ss_conf 88988674778888999999998887543102211000101133430155667211122222222332000034544344 Q gi|255764461|r 88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFF 167 (511) Q Consensus 88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~ 167 (511) T Consensus 74 -------------------------------------------------------------------------------- 73 (142) T cd00802 74 -------------------------------------------------------------------------------- 73 (142) T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 66644444344433332100067654577541034567532343337776578642221464602444322001234676 Q gi|255764461|r 168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN 247 (511) Q Consensus 168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~ 247 (511) +|||+.+.+++...+.. T Consensus 74 --------------------------------------------------------------y~~~~~~~~~~~~~~~~- 90 (142) T cd00802 74 --------------------------------------------------------------YWFDSAADDLLLLGYPF- 90 (142) T ss_pred --------------------------------------------------------------ECCCEEECHHHHCCCCC- T ss_conf --------------------------------------------------------------63401643487546678- Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHH-HHCCCCCCCCCCEEEC-CCCCCHH Q ss_conf 543100024110000456432100010247765433-1012323334303305-8601000 Q gi|255764461|r 248 PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSAN-LPLPKKVFSHGFILHK-GEKISKS 306 (511) Q Consensus 248 ~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~-~~~p~~i~~~g~l~~~-G~KMSKS 306 (511) +|.++++.|+|++. |+.++++++.+.+ ..++..++++|+++.+ |+||||| T Consensus 91 --------~~~~~~~~G~D~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~KmSKS 142 (142) T cd00802 91 --------YPVDLVLGGKDQIP-HLELTRDLLKALGGKFPPPEVLHHGLLLGEDGKKMSKS 142 (142) T ss_pred --------CCCCEEEECCCCCC-CCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCC T ss_conf --------87657886621014-76999999998377889986786311488699867899 No 48 >TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=99.82 E-value=3.7e-18 Score=153.33 Aligned_cols=346 Identities=22% Similarity=0.281 Sum_probs=199.4 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE---ECCCC------------------------CCC- Q ss_conf 88817997888999988322247897899999999885898036---23643------------------------702- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVL---FTTGT------------------------DEH- 54 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~---~~~g~------------------------D~h- 54 (511) +.+|++|---=|-|||||||||+|+.|.+|.++|-+++.||+|. ||-++ .+| T Consensus 116 ~~~ki~~EfsSaNp~gplH~GHlR~aiIGD~L~r~l~~~G~~V~r~yyVND~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 195 (600) T TIGR00456 116 ESKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQIGLLVLGVEKFGNEKETAVKKPDHG 195 (600) T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHCCCCCCCCC T ss_conf 87079998765888976110000257778899999987597079852005428999999999998512132026687420 Q ss_pred --CH-HHHHHHHH-CCCC------HHH------------------------HHHHHHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf --27-99999998-3999------899------------------------99999999999999808898867477888 Q gi|255764461|r 55 --GQ-KIAKAAQN-AGVT------TKV------------------------FVDQNSRNFRDMADVLDISYDDFIRTTEK 100 (511) Q Consensus 55 --g~-~i~~~A~~-~g~~------p~e------------------------~~~~~~~~~~~~~~~~~i~~D~~~rT~~~ 100 (511) |. +|+.+..- ++.. .++ +++..-+.++++++.+||.+|.|.-=++- T Consensus 196 ~~~~~y~~~~k~~~e~~~~~~~~s~~~~~~~~~~~~e~gdnNe~~~~~w~~~~~~~l~~~k~tl~~lni~~D~~~~E~E~ 275 (600) T TIGR00456 196 LEGFDYVEINKRLEENEEPINKQSLEEEARELFVKLESGDNNEKTIKLWKRLVEYALEGIKETLKRLNIHFDEFVWEGES 275 (600) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEE T ss_conf 12358889887886177765333545789999997432444289999999999999999999998629650058854045 Q ss_pred HHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC--CC Q ss_conf 89999999988875-4310221100010113343015566721112222222233200003454434466644444--34 Q gi|255764461|r 101 RHHDTCRILWKKIS-DKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDK--LL 177 (511) Q Consensus 101 ~~~~~~~~~~~~l~-~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~--l~ 177 (511) -....+..++..|. ++|+.++.+. .+.++++.|.|. .- T Consensus 276 ~~~~~~~~v~e~L~k~~gl~~ed~g---------------------------------------A~~~~L~~f~d~kadG 316 (600) T TIGR00456 276 VKNGKVPKVLEDLKKEKGLVVEDDG---------------------------------------ALWLDLTEFGDKKADG 316 (600) T ss_pred EECCCHHHHHHHHHHHCCCEEECCC---------------------------------------EEEEECCCCCCCCCCC T ss_conf 7748607899986310378067473---------------------------------------4899757766621267 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCCC Q ss_conf 4433332100067654577541034567532343337776578642221464602444322001234676543--10002 Q gi|255764461|r 178 SYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDG--SKAKF 255 (511) Q Consensus 178 ~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~--~~~~~ 255 (511) + -+|.-+.|.. |+ ++|.==| +| ++.+... .+++. T Consensus 317 ~-------------------------~k~~Vl~k~D---Gt--------~~Y~T~D--iA------yh~~k~~~~~~d~~ 352 (600) T TIGR00456 317 D-------------------------EKDRVLIKSD---GT--------YLYLTRD--IA------YHLDKLERLGFDKL 352 (600) T ss_pred C-------------------------CCCEEEEEEC---CC--------CCCHHHH--HH------HHHHHHHHCCCEEE T ss_conf 6-------------------------4564788508---95--------0105989--99------99998734397289 Q ss_pred CCCCHHCCCCCCCCHHCCHHHHHHHHHH-HHCCCCCCC--CCCEE-ECCCCCCHHHCCCCCCCCH--------------- Q ss_conf 4110000456432100010247765433-101232333--43033-0586010000022111000--------------- Q gi|255764461|r 256 WPADLHVIGKDILRFHAIYWPAFLLSAN-LPLPKKVFS--HGFIL-HKGEKISKSLGNVIDPIEV--------------- 316 (511) Q Consensus 256 w~~d~~~~G~Dii~Fh~i~~pa~l~~~~-~~~p~~i~~--~g~l~-~~G~KMSKS~GN~I~~~e~--------------- 316 (511) +.++|-|..=+=.-+| +.+..+| ...+..+.+ +|+|. .+|+|||+.+|++|..+++ T Consensus 353 ----i~V~gsdh~~h~~q~~-~~~e~LG~~~~~~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~e~~~RA~~~~~~~ 427 (600) T TIGR00456 353 ----IYVWGSDHKLHIAQVF-AILEKLGYLSKKKELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLDEASKRAGNVITKR 427 (600) T ss_pred ----EEEEECCHHHHHHHHH-HHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH T ss_conf ----9874051888999999-99997165378861689987643257888543455660223446899999999999611 Q ss_pred -------------HHHCCCCCCCHHHEEECCCCCCCEECCC-CCCCCHHHHHHHHHHHCC-HHHHHHHH-H-CCCCCCC- Q ss_conf -------------0002211121110000247873011122-211100133211022102-13455653-1-2332103- Q gi|255764461|r 317 -------------IEEVGVDALRYFLVREIACGKDGFYDKD-GLKKRVNADLANGIGNLV-SRSVSMIL-K-DYDGMIP- 378 (511) Q Consensus 317 -------------l~~~g~D~lR~~l~~~~~~~~D~~Fs~~-~~~~~~n~~L~~~lgN~~-~R~~~f~~-k-~~~g~ip- 378 (511) ++..|.||+||++++.. ...|..|+|+ ...+-- ++ -..|...+ +|+.++.. + .+++... T Consensus 428 ~~~~~~~e~~e~~a~~vG~gAvry~~l~~~-~~~~~~Fd~d~~~L~f~-~n-~~pY~QYAhaR~~Silr~~~~~~~~~~~ 504 (600) T TIGR00456 428 NTDLEQDEAEEKVADAVGIGAVRYADLSKN-RETHYVFDWDTAMLSFE-GN-TAPYIQYAHARICSILRKKAEIDGEKLI 504 (600) T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEECCCHHHCCC-CC-CCCHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 013522203789999973679999999727-89881550120111157-88-7432588899999987631023313455 Q ss_pred -C-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH Q ss_conf -4-5558-9556566789999999999877503589999999999999978865418701216999 Q gi|255764461|r 379 -T-PGAF-TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP 441 (511) Q Consensus 379 -~-~~~~-~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~ 441 (511) . ...+ ++.+..|+..+.+.++-+.++++..+.+..++.+++++...|.|-+..+ .+...+. T Consensus 505 ~~~~~~~~~~~E~~L~~~L~~fp~~~~~~~~~~~p~~l~~Yly~LA~~F~sfY~~~~--v~~~~~~ 568 (600) T TIGR00456 505 ADDFLLLKEEKEKELLKLLLQFPEVIEEAAEEREPHVLTNYLYELAKLFSSFYKACP--VLDAENE 568 (600) T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCH T ss_conf 320003688889999999856489999999854718889999999776423664177--8898626 No 49 >PRK00750 lysK lysyl-tRNA synthetase; Reviewed Probab=99.75 E-value=2.2e-16 Score=140.25 Aligned_cols=256 Identities=19% Similarity=0.227 Sum_probs=138.5 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCC-CH-------HH-HHHHHHCCCC----- Q ss_conf 88179978889999883222478978999999998858-9803623643702-27-------99-9999983999----- Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLD-GLDVLFTTGTDEH-GQ-------KI-AKAAQNAGVT----- 68 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~-G~~v~~~~g~D~h-g~-------~i-~~~A~~~g~~----- 68 (511) +..+++-|+ -.|+|.+||||+|..+.+|+++|-+|.+ |++|.+++.+|+. |+ |- +.-++-.|.+ T Consensus 28 ~~~vv~~tG-~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~iP 106 (513) T PRK00750 28 KGEVLFETG-YGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSVP 106 (513) T ss_pred CCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC T ss_conf 873999368-6899886230452266699999999984599668999851776543468899984999987499664079 Q ss_pred -----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH----H----------HHHHHHHHHHHHHHHHCCCCCCH--HHH Q ss_conf -----89999999999999999808898867477888----8----------99999999888754310221100--010 Q gi|255764461|r 69 -----TKVFVDQNSRNFRDMADVLDISYDDFIRTTEK----R----------HHDTCRILWKKISDKGDIYKGCY--SGW 127 (511) Q Consensus 69 -----p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~----~----------~~~~~~~~~~~l~~~G~iy~~~~--~~~ 127 (511) ...+++++.+.+.+.++.+||.++.. ++++- . +...+.+|+.+.. |---+.++ =.. T Consensus 107 dP~g~~~Sya~h~~~~~~~~l~~~gi~~e~~-s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~--~~~~~~~~~P~~p 183 (513) T PRK00750 107 DPFGTHESYAEHNNARLREFLDKFGFEYEFI-SATECYKSGRFDEALLKALEKYDEIMAILLPTL--GEERQATYSPFLP 183 (513) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCEEEEEE T ss_conf 9888757699999999999999839833997-678766448669999999985999999999843--8666787147787 Q ss_pred CCCCCCCCCCHHHHCC---CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 1133430155667211---1222222223320000345443446664444434443333210006765457754103456 Q gi|255764461|r 128 YSLRDEAYYNDDEVYK---GADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGL 204 (511) Q Consensus 128 y~~~~~~~~~~~~v~~---~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl 204 (511) +|++|++-+.-.=+.. .....+++.||+..+. ++. +. +.| +.| - T Consensus 184 iC~~cGkv~~t~v~~~d~~~~~v~y~~~cG~~~~~--------~~~----------~g--------~~K---L~W----r 230 (513) T PRK00750 184 ICPKCGKVLQVPVISVDADAGTITYDDECGHEGEV--------PVT----------GG--------HVK---LQW----K 230 (513) T ss_pred ECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEE--------CCC----------CC--------CCC---CCC----C T ss_conf 61888955204689997799889998499987876--------366----------88--------543---466----2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH---HHHH Q ss_conf 7532343337776578642221464602444322001234676543100024110000456432100010247---7654 Q gi|255764461|r 205 KDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA---FLLS 281 (511) Q Consensus 205 ~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa---~l~~ 281 (511) -||+. | |. .. ..|+-..|||.+- -|.. +..- T Consensus 231 vDW~m---R--W~-----------------------------~~--------~Vd~Ep~GKDh~~----S~~~~~~I~~i 264 (513) T PRK00750 231 VDWPM---R--WA-----------------------------AL--------GVDFEPAGKDHIS----SYDTSSRICEI 264 (513) T ss_pred CCCHH---H--HH-----------------------------HH--------CCCCCCCCCCCCC----CHHHHHHHHHH T ss_conf 56554---4--11-----------------------------10--------6430346511212----07679999998 Q ss_pred HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECC Q ss_conf 33101232333430330-586010000022111000000221112111000024787301112 Q gi|255764461|r 282 ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDK 343 (511) Q Consensus 282 ~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~ 343 (511) .|.++|-.+. -+|++. +|+|||||+||+|++.|.|+-++++++.+|+.......+.++|+. T Consensus 265 ~g~~pP~~~~-YE~fLd~~G~KmSsSkGngit~~ewL~~~~PEsl~rfm~~~pkpaK~l~fd~ 326 (513) T PRK00750 265 LGGEPPEGFM-YELFLDGKGQKISKSKGNGISIEDWLEYAPPESLARFMYARPKPAKRLYFDV 326 (513) T ss_pred HCCCCCCCCC-EEEEECCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH T ss_conf 3899999987-2279837986630568972389999975599999999971889884015656 No 50 >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Probab=99.71 E-value=4.8e-15 Score=130.30 Aligned_cols=256 Identities=21% Similarity=0.284 Sum_probs=137.2 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CH-HH----H--HHHHH-CCC-------- Q ss_conf 81799788899998832224789789999999988589803623643702-27-99----9--99998-399-------- Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH-GQ-KI----A--KAAQN-AGV-------- 67 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h-g~-~i----~--~~A~~-~g~-------- 67 (511) ..++|-|. -.|+|.+|||+.+.-+.+|+++|-+|-+|++|.+++=+|++ |+ +| . ...++ .|. T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521) T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521) T ss_pred CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC T ss_conf 86898347-68988732142898989999999999748865799981487510127999998689998709964348997 Q ss_pred --CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCH--HHHCC Q ss_conf --989999999999999999808898867477888--------------899999999888754310221100--01011 Q gi|255764461|r 68 --TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEK--------------RHHDTCRILWKKISDKGDIYKGCY--SGWYS 129 (511) Q Consensus 68 --~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~--------------~~~~~~~~~~~~l~~~G~iy~~~~--~~~y~ 129 (511) ....+++++.+.|.+.++.+||.+..+ ++++- +++..+++|+.+...+ -.+.++ -..+| T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~-s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~--~~~e~~~P~~piC 174 (521) T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV-SATELYKSGLYDEAIRIALERRDEIMEILNEYRGR--ELEEDWSPFMPIC 174 (521) T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEECCCCC T ss_conf 66533599999999999998649864998-76775644558999999986579999999985187--6667723022256 Q ss_pred CCCCCCCCHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC Q ss_conf 3343015566721112--22222223320000345443446664444434443333210006765457754103456753 Q gi|255764461|r 130 LRDEAYYNDDEVYKGA--DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL 207 (511) Q Consensus 130 ~~~~~~~~~~~v~~~~--~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw 207 (511) ++|++-+.-.=..... .-++-+.||+-.+ .+...-..=+.| T Consensus 175 ~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~-----------------------------v~ir~g~~KL~W-------- 217 (521) T COG1384 175 EKCGRILTTPVIEWDGEGTVEYRCECGHEGE-----------------------------VDIRGGEGKLPW-------- 217 (521) T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCE-----------------------------EECCCCCCCCCC-------- T ss_conf 5558703068899637844999866886104-----------------------------622336764435-------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHH-HHHHH- Q ss_conf 234333777657864222146460244432200123467654310002411000045643210001---0247-76543- Q gi|255764461|r 208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPA-FLLSA- 282 (511) Q Consensus 208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa-~l~~~- 282 (511) |++|+-. | ++.+ .|+-..||| |.. .|.. -..+. T Consensus 218 -----RvdWp~R-----------W--------~~lg--------------Vd~EPfGKD----H~a~ggSydtg~~I~~e 255 (521) T COG1384 218 -----RVDWPMR-----------W--------AALG--------------VDFEPFGKD----HAAAGGSYDTGKRIARE 255 (521) T ss_pred -----CCCCCCH-----------H--------HCCC--------------CCCCCCCCC----CCCCCCCHHHHHHHHHH T ss_conf -----7675001-----------0--------0008--------------310357853----13456763789999998 Q ss_pred --HHHCCCCCCCCCCEEECC-CCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCC Q ss_conf --310123233343033058-601000002211100000022111211100002478730111222 Q gi|255764461|r 283 --NLPLPKKVFSHGFILHKG-EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDG 345 (511) Q Consensus 283 --~~~~p~~i~~~g~l~~~G-~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~ 345 (511) |+++|..+. -+|++++| +|||||+||+|++.|.++-+.+++|||+++...|.. -.+|+.+. T Consensus 256 i~g~~pP~~~~-YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r-~~~~d~~~ 319 (521) T COG1384 256 IFGYEPPVPFV-YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNR-HIDFDFDL 319 (521) T ss_pred HCCCCCCCCCC-EEEEEECCCCCCCCCCCCEECHHHHHHHCCHHHEEEEEEECCCCC-CEECCCCC T ss_conf 64999997775-588985488665568785785999987539847332354058874-43317887 No 51 >pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes. Probab=99.70 E-value=6.7e-17 Score=143.98 Aligned_cols=263 Identities=19% Similarity=0.219 Sum_probs=140.3 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH--HHH-------HHHHHCCCC------ Q ss_conf 88179978889999883222478978999999998858980362364370227--999-------999983999------ Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ--KIA-------KAAQNAGVT------ 68 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~--~i~-------~~A~~~g~~------ 68 (511) +.+++|-|. -.|+|.+|||++|..+.+|+++|.+|.+|.+|.+++.+|+.-- +|. .-++-.|.+ T Consensus 18 ~~~~v~~tG-~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IPd 96 (355) T pfam01921 18 KGEILVETG-IGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIPD 96 (355) T ss_pred CCCEEEECC-CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECCC T ss_conf 985899526-6899886421560179999999999974987699998215651013788999989998736975213479 Q ss_pred ----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CH----------HHHHHHHHHHHHHHHHHCCCCCCH--HHHCC Q ss_conf ----899999999999999998088988674778---88----------899999999888754310221100--01011 Q gi|255764461|r 69 ----TKVFVDQNSRNFRDMADVLDISYDDFIRTT---EK----------RHHDTCRILWKKISDKGDIYKGCY--SGWYS 129 (511) Q Consensus 69 ----p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~---~~----------~~~~~~~~~~~~l~~~G~iy~~~~--~~~y~ 129 (511) ...+++++.+.+.+.++.+||.+..++.|. +- ++...+.+|+.+...+. .+.++ -..+| T Consensus 97 P~g~~~Sya~h~~~~~~~~L~~~gi~~ef~s~te~Y~sG~~~~~i~~~l~~~~~I~~Il~~~~g~e--~~~~y~Pf~piC 174 (355) T pfam01921 97 PFGCHESYAEHFNAPFLEFLDRFGIEYEFISATELYKSGLYDEAILIALENRDEIMEILLPYRGEE--RQETYSPFLPIC 174 (355) T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCEEEEEEEC T ss_conf 888745599999999999999839828998678855246559999999985899999999852866--688736898885 Q ss_pred CCCCCCCCHHHHCC----CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 33430155667211----12222222233200003454434466644444344433332100067654577541034567 Q gi|255764461|r 130 LRDEAYYNDDEVYK----GADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLK 205 (511) Q Consensus 130 ~~~~~~~~~~~v~~----~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~ 205 (511) +.|++-+.- .|.. +....+-+.||+..+. -+...+.| +.| -- T Consensus 175 ~~cGrv~~t-~v~~~d~~~~~v~Y~c~cG~~~~~--------------------------~~~~g~~K---L~W----kv 220 (355) T pfam01921 175 PKCGRVLTT-PVVEYDAEGGTITYRCECGHEGEV--------------------------DITGGNGK---LQW----KV 220 (355) T ss_pred CCCCCEEEE-EEEEEECCCCEEEEECCCCCEEEE--------------------------EECCCCCC---CCC----CC T ss_conf 888937256-899996789879998699988998--------------------------41157666---787----56 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHH-H--HH-HH Q ss_conf 53234333777657864222146460244432200123467654310002411000045643210001024-7--76-54 Q gi|255764461|r 206 DLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWP-A--FL-LS 281 (511) Q Consensus 206 Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~p-a--~l-~~ 281 (511) ||+. | |. . ...|+...|||.+--.+ -+. + +. .. T Consensus 221 DW~m---R--W~-----------------------------~--------lgVdfEp~GKDh~~~GG-S~~~~~~I~~~i 257 (355) T pfam01921 221 DWAM---R--WA-----------------------------A--------LGVDFEPFGKDHAAPGG-SYDTSSRIAREI 257 (355) T ss_pred CCHH---E--EE-----------------------------E--------ECCEEECCCCCCCCCCC-CCHHHHHHHHHH T ss_conf 6333---0--57-----------------------------8--------56348625743246787-622289999997 Q ss_pred HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCC Q ss_conf 33101232333430330-58601000002211100000022111211100002478730111222111 Q gi|255764461|r 282 ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKK 348 (511) Q Consensus 282 ~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~ 348 (511) .|.++|-.+ .-+|+++ +|+|||||+||+|++.|.|+-+++++|||++++..| .+..+|+.+.+.. T Consensus 258 ~g~~pP~~~-~YE~~~~kgg~KmSsSkGn~is~~e~L~~~~pE~Lr~l~~~~~P-~~a~~l~fd~ip~ 323 (355) T pfam01921 258 LGGEPPEPF-PYELILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLMFRVKP-KKAKRLDFDVIPK 323 (355) T ss_pred CCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCC-CCCEEECCCHHHH T ss_conf 099999988-65789966997104688987699999986699999999804288-8451207304466 No 52 >cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Probab=99.68 E-value=1.3e-16 Score=141.84 Aligned_cols=257 Identities=19% Similarity=0.228 Sum_probs=137.7 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--------HHHHHHHHHCCCC------- Q ss_conf 8817997888999988322247897899999999885898036236437022--------7999999983999------- Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG--------QKIAKAAQNAGVT------- 68 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg--------~~i~~~A~~~g~~------- 68 (511) +.+++|-|. -.|+|.+|||++|..+.+|+++|.++.+|++|.+++.+|+.- .| +.-++-.|.+ T Consensus 18 k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~lRKVp~~lp-e~~~~ylg~PL~~IPdP 95 (354) T cd00674 18 KEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDPLRKVPDNVP-ESLEQYIGMPLSSVPDP 95 (354) T ss_pred CCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHCCCCCCCC-HHHHHHCCCCCEECCCC T ss_conf 985899478-7999886320550178899999999975996799998405551003755787-99998629963006897 Q ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CH----------HHHHHHHHHHHHHHHHHCCCCCCHHH-----H Q ss_conf ---899999999999999998088988674778---88----------89999999988875431022110001-----0 Q gi|255764461|r 69 ---TKVFVDQNSRNFRDMADVLDISYDDFIRTT---EK----------RHHDTCRILWKKISDKGDIYKGCYSG-----W 127 (511) Q Consensus 69 ---p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~---~~----------~~~~~~~~~~~~l~~~G~iy~~~~~~-----~ 127 (511) ...+++++.+.+.+.++.+||.+.....|. +- ++.+.+++|+.+...+ ...+. . T Consensus 96 ~G~~~SyaeHf~~~f~~~L~~~gi~~e~~s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~g~-----e~~~~y~P~~p 170 (354) T cd00674 96 FGCHESYAEHFNAPFEESLDRFGIEVEFISASEMYKSGLYDEQIKRALEKRDEIMEILNEYRGR-----ELQETWYPYMP 170 (354) T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE T ss_conf 7775459999999999999984982899885660225762799999998289999999985475-----55786477764 Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC Q ss_conf 11334301556672111222222223320000345443446664444434443333210006765457754103456753 Q gi|255764461|r 128 YSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL 207 (511) Q Consensus 128 y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw 207 (511) +|+.|++ + ..++.-.+.++..+.. +.. ..+...+.......+ +.| --|| T Consensus 171 iC~~cGk-~-----------------~t~v~~~d~~~~~V~Y---~c~-----cG~~~~~~~~~g~gK-L~W----rvDW 219 (354) T cd00674 171 YCEKCGK-D-----------------TTTVEEYDAEAETVRY---RCE-----CGHEGEVDIRGGGGK-LQW----RVDW 219 (354) T ss_pred ECCCCCC-C-----------------EEEEEEEECCCCEEEE---ECC-----CCCEEEEECCCCCCE-EEE----EECC T ss_conf 0588881-1-----------------6768999489997999---959-----998888843788620-300----1035 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHH-H--HHHH-HH Q ss_conf 234333777657864222146460244432200123467654310002411000045643210001024-7--7654-33 Q gi|255764461|r 208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWP-A--FLLS-AN 283 (511) Q Consensus 208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~p-a--~l~~-~~ 283 (511) +. | |. +...|+...|||.+--.. -|. + +... .| T Consensus 220 ~m---R--W~-------------------------------------~lgVd~Ep~GKDh~~~Gg-S~d~~~~I~~~i~g 256 (354) T cd00674 220 AM---R--WA-------------------------------------ALGVDFEPFGKDHASSGG-SYDTSKEIAREIFG 256 (354) T ss_pred EE---E--EE-------------------------------------ECCEEEEECCCCCCCCCC-CHHHHHHHHHHHCC T ss_conf 14---5--53-------------------------------------405158835742024675-25578999999709 Q ss_pred HHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECC-CCCCCEECC Q ss_conf 101232333430330-586010000022111000000221112111000024-787301112 Q gi|255764461|r 284 LPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA-CGKDGFYDK 343 (511) Q Consensus 284 ~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~-~~~D~~Fs~ 343 (511) .++|..+. .+|+++ +|+|||||+||+|++.|.++-+++++|||+++. .| ...+++|+. T Consensus 257 ~~pP~~~~-YE~~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~~-~p~~~k~i~fD~ 316 (354) T cd00674 257 GEPPEGVM-YEFIGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYAR-RKNPAKHIGFDL 316 (354) T ss_pred CCCCCCCC-EEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCC T ss_conf 99998841-6999906998722467861289999976599999999860-998553224675 No 53 >pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase. Probab=99.68 E-value=6.3e-16 Score=136.81 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=80.7 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH---C-------------- Q ss_conf 88817997888999988322247897899999999885898036236437022799999998---3-------------- Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN---A-------------- 65 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~---~-------------- 65 (511) +.+|++|--.=|-|+||+|+||+|+.+.+|.++|-++..||+|.=..-..|.|..|..-+.- . T Consensus 17 k~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l 96 (345) T pfam00750 17 ENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDL 96 (345) T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 99889998538999988504101527999999999998799598998768648999999999998566654556650566 Q ss_pred -----------------------------CCCH--HHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf -----------------------------9998--9999-9999999999998088988674778888999999998887 Q gi|255764461|r 66 -----------------------------GVTT--KVFV-DQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKI 113 (511) Q Consensus 66 -----------------------------g~~p--~e~~-~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l 113 (511) ..++ .++. +.+.+.++++++++|+.||.|..-++-.....+.+++.+| T Consensus 97 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~~~~~l~~l~v~fD~~~~Ese~~~~~~v~~vl~~L 176 (345) T pfam00750 97 EDGYRGIKKDYIAEEIFAKEARNAVVLLQSGDEEFREMWVLLIFDHIKQSLNKIYDDFDVTLHEGESVYKGRMNDAVKDL 176 (345) T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHH T ss_conf 66421566888868999985899874500147999999999999999999999640537671067888445099999999 Q ss_pred HHHHCCCCCC Q ss_conf 5431022110 Q gi|255764461|r 114 SDKGDIYKGC 123 (511) Q Consensus 114 ~~~G~iy~~~ 123 (511) .++|++|+.+ T Consensus 177 ~~~g~~~e~d 186 (345) T pfam00750 177 KDNGLVYEND 186 (345) T ss_pred HHCCCEEEEC T ss_conf 8779889748 No 54 >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Probab=99.66 E-value=1.8e-15 Score=133.40 Aligned_cols=149 Identities=16% Similarity=0.224 Sum_probs=103.1 Q ss_pred ECCCCCCCCHHHHHHHHHHHCCHHHHHHH-H-HCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 11222111001332110221021345565-3-123321--0345558955656678999999999987750358999999 Q gi|255764461|r 341 YDKDGLKKRVNADLANGIGNLVSRSVSMI-L-KDYDGM--IPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQ 416 (511) Q Consensus 341 Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~-~-k~~~g~--ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~ 416 (511) |+++++.+.++ .+++|+|| +.|.+.+- . ..++.. ......++..|+|+++++++++++++++|++|+|++|++. T Consensus 1 F~e~~v~e~~R-~f~nklwN-a~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~ 78 (183) T cd07961 1 FSEKGVREVVR-KVLLPLWN-AYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRA 78 (183) T ss_pred CCHHHHHHHHH-HHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 98889999983-58999998-99999962210179954345560105588999999999999999999980119999999 Q ss_pred HHHHH-HHHHHHHHHHCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC----CCCCCHHHHC Q ss_conf 99999-9997886541870121699-9999999999999999999985432248999999984988----0007955510 Q gi|255764461|r 417 VISLV-SEVDRYFDAQKPWELKKTN-PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA----DENRCFQSLD 490 (511) Q Consensus 417 i~~l~-~~~N~yi~~~~PW~l~k~d-~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~----~~~~~~~~~~ 490 (511) +++|+ +.+|.|++..++ .+.+++ .+....++.++..++..+.+||||||||+||+||+.|... .+++...+++ T Consensus 79 l~~F~~~l~~wYie~~K~-rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P 157 (183) T cd07961 79 LLEFIDELTNWYIRRNRK-RFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWP 157 (183) T ss_pred HHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCC T ss_conf 999999998999999889-9970566388899999999999999997576402439999998602468988803200689 Q ss_pred CC Q ss_conf 12 Q gi|255764461|r 491 QR 492 (511) Q Consensus 491 ~~ 492 (511) +. T Consensus 158 ~~ 159 (183) T cd07961 158 EV 159 (183) T ss_pred CC T ss_conf 98 No 55 >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Probab=99.65 E-value=2e-15 Score=133.16 Aligned_cols=130 Identities=18% Similarity=0.334 Sum_probs=100.8 Q ss_pred ECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 1122211100133211022102134556531233210---3455589556566789999999999877503589999999 Q gi|255764461|r 341 YDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMI---PTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV 417 (511) Q Consensus 341 Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~i---p~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i 417 (511) ||++++... .-+++|+||. .+|+..+.++.. .....+.+.|+|+++++++++++++++|++|+|++|++.| T Consensus 1 ~~e~~i~~~--~rf~nKlwN~----~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l 74 (135) T cd07962 1 FDEKRVEGG--RNFCNKLWNA----ARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATAL 74 (135) T ss_pred CCHHHHHHH--HHHHHHHHHH----HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 989998999--9999999999----9999875453687546610077999999999999999999999865899999999 Q ss_pred HHHH--HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 9999--99978865418701216999999999999999999999985432248999999984 Q gi|255764461|r 418 ISLV--SEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477 (511) Q Consensus 418 ~~l~--~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L 477 (511) ++|+ +.+|.|++..++ .+..++......+.+++..+++.+.++|+|||||+||+||+.| T Consensus 75 ~~F~~~~ls~~Yie~~K~-rl~~~~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l 135 (135) T cd07962 75 YEFFWNDFCDWYLELVKP-RLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135) T ss_pred HHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999899998999999799-8729978999999999999999999999878799999998439 No 56 >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Probab=99.56 E-value=3.5e-14 Score=123.95 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=98.2 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHH Q ss_conf 332110221021345565312332103-----4555895565667899999999998775035899999999999--999 Q gi|255764461|r 352 ADLANGIGNLVSRSVSMILKDYDGMIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEV 424 (511) Q Consensus 352 ~~L~~~lgN~~~R~~~f~~k~~~g~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~ 424 (511) .+...|+|| +.+|+..+.++.-+ ....+...|+|+++++++++++++++|++|+|+.|++.+.+|+ +.+ T Consensus 10 ~e~~rKiwN----t~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ls 85 (180) T cd07960 10 AEAYRKIRN----TFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLS 85 (180) T ss_pred HHHHHHHHH----HHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC T ss_conf 999999999----9999998637999433458922287989999999999999999999838999999999999402103 Q ss_pred HHHHHHHCCCHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCC Q ss_conf 78865418701216--999999999999999999999985432248999999984988--00079555101 Q gi|255764461|r 425 DRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQ 491 (511) Q Consensus 425 N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~ 491 (511) +.|++..|+ .+.. .+..+...+.+++.+++..+..+|+|||||+||+||+.|... .++....++++ T Consensus 86 ~~Yle~~K~-rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~ 155 (180) T cd07960 86 AFYLDIIKD-RLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPE 155 (180) T ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCC T ss_conf 599999779-7615888838999999999999999898744000453999998756689999757148999 No 57 >pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA. Probab=99.42 E-value=3.7e-12 Score=108.98 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 65667899999999998775035899999999999--9997886541870121699999999999999999999998543 Q gi|255764461|r 387 DESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQA 464 (511) Q Consensus 387 D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~P 464 (511) |+|+++++++++++++++|++|+|++|++.+++|+ +.++.|++..++. +..++........+++..+++.+.++|+| T Consensus 1 Dkwil~~l~~~i~~v~~~~e~~~f~~a~~~l~~f~~~~l~~~Yle~~K~~-l~~~~~~~~~~~~~~l~~~l~~~l~ll~P 79 (148) T pfam08264 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDR-LYGEDPDESKRRATTLYEVLETLLRLLAP 79 (148) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999999999999998079999999999999999989999974052-14788067777999999999999999833 Q ss_pred CHHHHHHHHHHHCCCC Q ss_conf 2248999999984988 Q gi|255764461|r 465 FVPKLANKIFDILFVA 480 (511) Q Consensus 465 i~P~~ae~i~~~Lg~~ 480 (511) ||||+||+||+.|+.+ T Consensus 80 ~~PfitEeiw~~~~~~ 95 (148) T pfam08264 80 FMPFITEELWQKLGLK 95 (148) T ss_pred HHHHHHHHHHHHCCCC T ss_conf 1088899999867999 No 58 >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Probab=99.41 E-value=2.2e-12 Score=110.61 Aligned_cols=116 Identities=18% Similarity=0.370 Sum_probs=81.7 Q ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 12221110013321102210213455653123321034555895565667899999999998775035899999999999 Q gi|255764461|r 342 DKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV 421 (511) Q Consensus 342 s~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~ 421 (511) |.+++....+ +++++||++.+.... . .+ .......+..|++++.+++++++++++++|+|+|+.|++.+|+|+ T Consensus 2 se~gIeg~~r--Fl~KlW~l~~~~~~~---~-~~-~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~ 74 (117) T cd07958 2 SDSGVEGAYR--FLNRVWRLVTELAEA---L-AA-PAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117) T ss_pred CCCHHHHHHH--HHHHHHHHHHHHHHH---C-CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 8006999999--999999999988863---1-34-556544667449999999999999999998522059999999999 Q ss_pred HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 99978865418701216999999999999999999999985432248999999984 Q gi|255764461|r 422 SEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477 (511) Q Consensus 422 ~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L 477 (511) +..+++.... ..... +..+++..+.+||+|||||+|||||+.| T Consensus 75 N~l~~~~~~~----------~~~~~---~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117) T cd07958 75 NALYKYKKKD----------AQHAA---VLREALETLVLLLAPFAPHIAEELWEEL 117 (117) T ss_pred HHHHHHHCCC----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9998846144----------11499---9999999999998842479999998539 No 59 >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Probab=99.30 E-value=3.5e-11 Score=101.76 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=75.7 Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHCCCHHHCCCHH Q ss_conf 345565312332103455589556566789999999999877503589999999-9999999788654187012169999 Q gi|255764461|r 364 RSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV-ISLVSEVDRYFDAQKPWELKKTNPD 442 (511) Q Consensus 364 R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i-~~l~~~~N~yi~~~~PW~l~k~d~~ 442 (511) +...++.+..+.. .+.+..+..|+|+++++++++++++++||+++|++|++.+ +++.+..++|++..+ +. T Consensus 15 ~~~~~~~e~~~~~-~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~~~Y~~~~~------~~-- 85 (117) T cd07959 15 RFYELAEELIETE-GELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGG------AG-- 85 (117) T ss_pred HHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CC-- T ss_conf 9999999998625-77888977689999999999999999999878878999999999999999999845------54-- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 99999999999999999985432248999999984 Q gi|255764461|r 443 RASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477 (511) Q Consensus 443 ~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L 477 (511) ....++ .+++..+++||+||+||+||+||+.| T Consensus 86 ~~~~~l---~~~l~~~~~lLaP~~PhiaEEiW~~l 117 (117) T cd07959 86 MNKDLL---RRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117) T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 149999---99999999998473348699998639 No 60 >PRK00574 gltX glutamyl-tRNA synthetase; Reviewed Probab=99.29 E-value=2.1e-10 Score=96.02 Aligned_cols=268 Identities=18% Similarity=0.199 Sum_probs=133.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998832224789789999999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) |=|+|.||||++|+.+..-.+||-. .|.=++-+-+||. +-.++.+.+.+.+.++.+||.+|. T Consensus 11 PSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLRIEDTD~----------------~R~~~~~~~~I~~~L~wlgl~~DE 72 (489) T PRK00574 11 PSPTGYLHIGNARTALFNYLFAKHN--NGKFILRIEDTDQ----------------ERNVEGGEESQLENLKWLGIDWDE 72 (489) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 8999842247899999999999964--9989998677898----------------778769999999999987988877 Q ss_pred CCC---CC----CHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCE----E-CC Q ss_conf 747---78----8889999999988875431022110001011334301-5566721112222222233200----0-03 Q gi|255764461|r 94 FIR---TT----EKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY-YNDDEVYKGADGQYYNAQHNPV----Q-WM 160 (511) Q Consensus 94 ~~r---T~----~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~----~-~~ 160 (511) =+. .. ..+....=+++..+|.++|.+|.. ||...+-- .-......|..+.+.+.|.+-. + .. T Consensus 73 ~p~~~g~~gPY~QS~R~~~Y~~~a~~Ll~~G~AY~C-----fct~eel~~~r~~~~~~g~~~~Y~~~cr~l~~~e~~~~~ 147 (489) T PRK00574 73 GPDKGGEYGPYRQSERLDIYQKYADQLLEEGKAYYC-----FCTEEELEAEREKQEARGETPKYDGKCLGLTKEEIEEYE 147 (489) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 877788888835126899999999999974997452-----577999999899997569998787232338988899898 Q ss_pred -CCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf -45443--446664444434443333210006765457754103456753234333777657864222146460244432 Q gi|255764461|r 161 -EEEGY--FFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTN 237 (511) Q Consensus 161 -~~~~~--f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~g 237 (511) +.+.+ =|+++. +. ...+...++..+. +=.+.+-|.-|=|.. |.|.-.-.. |++ |..++ T Consensus 148 ~~g~~~viRfk~p~--~~---------~~~~~D~v~G~i~-~~~~~ldD~Vi~rsD---G~PtYhla~-VVD---D~~M~ 208 (489) T PRK00574 148 AEGIPPVIRFKVPE--NG---------TYSFDDIVKGKIS-FDSSTIGDFVIVKSD---GFPTYNFAV-VVD---DHLME 208 (489) T ss_pred HCCCCCEEEEECCC--CC---------EEEEEEECCCCCC-CCCCCCCCEEEEECC---CCEEEEECC-CCC---CCCCC T ss_conf 56999237653699--87---------1898642367646-575667876888148---980564121-147---51258 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHCC-CCC---CCCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCC- Q ss_conf 20012346765431000241100004-564---3210001024776543310123233343033-05860100000221- Q gi|255764461|r 238 YLTTTGYLDNPDGSKAKFWPADLHVI-GKD---ILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVI- 311 (511) Q Consensus 238 Y~s~~~~~~~~~~~~~~~w~~d~~~~-G~D---ii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I- 311 (511) --|+| |-| |.+-|-++| .|+|.++|.-.. ..+++ .+|+||||.-|-.. T Consensus 209 ---------------------ITHVIRGedhlsnTpkqi~ly----~Alg~~~P~faH-lPLi~~~dg~KLSKR~g~~~~ 262 (489) T PRK00574 209 ---------------------ITHVIRGEDHISNTPKQIMIY----EAFGWEPPKFGH-MPLILNEDRKKLSKRDGATLQ 262 (489) T ss_pred ---------------------CCEEECCHHHHHHHHHHHHHH----HHHCCCCCEEEE-EEEEECCCCCCCCCCCCCHHH T ss_conf ---------------------764303521577639999999----982899974785-111378999816666797015 Q ss_pred CCCCHHHH-CCCCCCCHHHEEECC--CCCCCEECCCCCCCC Q ss_conf 11000000-221112111000024--787301112221110 Q gi|255764461|r 312 DPIEVIEE-VGVDALRYFLVREIA--CGKDGFYDKDGLKKR 349 (511) Q Consensus 312 ~~~e~l~~-~g~D~lR~~l~~~~~--~~~D~~Fs~~~~~~~ 349 (511) ...++-++ |-|+++.=||+..+. .+..--||.+++++. T Consensus 263 sv~~yre~GylPeAl~NyLa~LGWs~~~~~Eifsl~eli~~ 303 (489) T PRK00574 263 FIEDYRELGYLPEAIFNFIALLGWSPEGEEEIFSLEELIKL 303 (489) T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH T ss_conf 79999987986669999999807999987465899999864 No 61 >PRK12558 glutamyl-tRNA synthetase; Provisional Probab=99.24 E-value=1.8e-10 Score=96.47 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=133.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998832224789789999999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) |-|+|.|||||||+.+....+||- ..|.=++-+-+||. .-.+..+.+.+.++++.+||.+|. T Consensus 9 PSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~----------------~R~~~~~~~~i~~~L~WlGl~wDe 70 (461) T PRK12558 9 PSPTGYIHIGNARTALFNWLFARA--HGGKFILRYDDTDV----------------ERSKQEYADAIADDLRWLGLDPDR 70 (461) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 898985327899999999999996--19989998776898----------------768879999999999987999998 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCE--EC----C--CCCC Q ss_conf 747788889999999988875431022110001011334301-5566721112222222233200--00----3--4544 Q gi|255764461|r 94 FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY-YNDDEVYKGADGQYYNAQHNPV--QW----M--EEEG 164 (511) Q Consensus 94 ~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~--~~----~--~~~~ 164 (511) =++ ..++...=++...+|.++|.+|.. ||...+-- ........+..+.+.+.|.+-. +. . ...+ T Consensus 71 ~~~--QS~r~~~Y~~~~~~L~~~g~aY~C-----fct~eel~~~r~~~~~~~~~~~Y~~~~~~l~~~~~~~~~~~g~~p~ 143 (461) T PRK12558 71 VEY--QSKRFDRYAEAAEKLKAAGLLYAC-----YETAEELERRRKIQLARRLPPVYDRAALKLTDAEKAALEAEGRKPH 143 (461) T ss_pred CCH--HHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE T ss_conf 741--643999999999999986993653-----8888999999999996699988784202299888876662479977 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 34466644444344433332100067654577541034567532343337776578642221464602444322001234 Q gi|255764461|r 165 YFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGY 244 (511) Q Consensus 165 ~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~ 244 (511) +-++++........ .......+...++..+. +-.+.+.|.-|-|.. |.|.-.--. |++ |+.++ T Consensus 144 ~r~~~~~~~~~~~~--~~~~~~~~~D~v~G~i~-~~~~~~~D~Vi~rsD---G~ptY~lA~-VVD---D~~m~------- 206 (461) T PRK12558 144 WRFLLPNFESDPFA--TQRTEVHWDDLVRGPQT-VDLASLSDPVLVRED---GTYLYTLPS-VVD---DIDMG------- 206 (461) T ss_pred EEEEECCCCCCCCC--CCCCCEEEEECCCCEEE-ECCCCCCCEEEEECC---CCCEEEEEE-EEC---CCCCC------- T ss_conf 99983542135567--76772798401463067-334345882899348---971034557-855---75578------- Q ss_pred CCCCCCCCCCCCCCCHHCC-CCCCC---CHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHH Q ss_conf 6765431000241100004-56432---10001024776543310123233343033-0586010000022111000000 Q gi|255764461|r 245 LDNPDGSKAKFWPADLHVI-GKDIL---RFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEE 319 (511) Q Consensus 245 ~~~~~~~~~~~w~~d~~~~-G~Dii---~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~ 319 (511) --|+| |-|-+ +-|.+ +..++|.++|... .+.+++ .+|+|+||.-| .+...++.++ T Consensus 207 --------------IthviRg~d~l~~t~~~~~----l~~alg~~~p~~~-h~pli~~~~g~klskR~g-~~sv~~yr~~ 266 (461) T PRK12558 207 --------------VTHIIRGDDHVTNTGVQIA----LFRALGAEPPVFG-HHNLLTTASGEGLSKRTG-ALSVGSLREA 266 (461) T ss_pred --------------CCEEEECHHHHHHCHHHHH----HHHHHCCCCCEEE-ECCEEECCCCCCCCCCCC-CCCHHHHHHC T ss_conf --------------8544636858861599999----9999579998089-713456899981666689-7589999987 Q ss_pred -CCCCCCCHHHEEECC-CCCCCEECCCCCCCC Q ss_conf -221112111000024-787301112221110 Q gi|255764461|r 320 -VGVDALRYFLVREIA-CGKDGFYDKDGLKKR 349 (511) Q Consensus 320 -~g~D~lR~~l~~~~~-~~~D~~Fs~~~~~~~ 349 (511) |-|+++.=||+..+. .+.+-.|+.+++++. T Consensus 267 GylPeAl~NyLalLGWs~~~~Ei~sl~eli~~ 298 (461) T PRK12558 267 GYEPMAVASLAVLLGTSENVDAAPDMAALAEH 298 (461) T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC T ss_conf 99847899999984799980677648877530 No 62 >PRK12410 glutamyl-tRNA synthetase; Provisional Probab=99.23 E-value=2e-10 Score=96.21 Aligned_cols=265 Identities=13% Similarity=0.147 Sum_probs=132.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998832224789789999999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) |-|+|.|||||||+.+..-.+||- ..|.=++-+-+||. +-....+.+.+.++++.+||.+|. T Consensus 6 PSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~----------------~R~~~~~~~~i~~~L~wlGl~wDe 67 (433) T PRK12410 6 PSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFIIRIEDTDK----------------ERNIEGKDKEILEILNLFGISWDK 67 (433) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 797996427899999999999985--59989998787899----------------989869999999999985999998 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCE--ECC---CCCCCCC Q ss_conf 747788889999999988875431022110001011334301-5566721112222222233200--003---4544344 Q gi|255764461|r 94 FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY-YNDDEVYKGADGQYYNAQHNPV--QWM---EEEGYFF 167 (511) Q Consensus 94 ~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~--~~~---~~~~~f~ 167 (511) =++ ..+..+.=++...+|.++|.+|.. ||.+.+-- .-......+..+.+.+.|.+-. +.. ++-.|=| T Consensus 68 ~~~--QS~R~~~Y~~~~~~L~~~g~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~c~~l~~~e~~~~~~~~~~R~ 140 (433) T PRK12410 68 LVY--QSENLKFHRQMAEKLLSEKKAFAC-----FCSEEELEAKKEKAKKQKKPYRYDGTCENLADIEVLKCEKPFVVRL 140 (433) T ss_pred CEE--CCCCHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE T ss_conf 831--257899999999999980996896-----5678999998888985599977887544389867974699827999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 66644444344433332100067654577541034567532343337776578642221464602444322001234676 Q gi|255764461|r 168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN 247 (511) Q Consensus 168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~ 247 (511) +++. .-.. +...++.++. +-.+.+.|.-|-|.. |.|.-.- ++. .+ T Consensus 141 k~p~---~~~~---------~~D~v~G~i~-~~~~~~~D~Vi~R~D---G~ptY~l----------------a~V---VD 185 (433) T PRK12410 141 KKPN---HTMS---------FTDAIKGELS-FEPDEIDSFVILRQD---KTPTYNF----------------ACA---VD 185 (433) T ss_pred ECCC---CCEE---------EEECCCCEEC-CCCCCCCCEEEEECC---CCEEEEE----------------EEE---EC T ss_conf 8799---9858---------8634475341-581105874899348---9835642----------------279---64 Q ss_pred CCCCCCCCCCCCHHCC-CCCCCC---HHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHH-CC Q ss_conf 5431000241100004-564321---0001024776543310123233343033-0586010000022111000000-22 Q gi|255764461|r 248 PDGSKAKFWPADLHVI-GKDILR---FHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEE-VG 321 (511) Q Consensus 248 ~~~~~~~~w~~d~~~~-G~Dii~---Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~-~g 321 (511) +.. -.--|++ |.|-+. -|.+ +..++|.+.|-....+.+++ .+|+|+||..|. ....++.++ |- T Consensus 186 -D~~-----m~IThViRGeDhl~nT~kQi~----l~~aLg~~~P~~~~H~pli~~~~g~kLSKR~g~-~~i~~yre~Gyl 254 (433) T PRK12410 186 -DML-----YDISFIIRGEDHVSNTPKQIL----IREALGYNKPITYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFL 254 (433) T ss_pred -CCC-----CCCCEEECCHHHHHHHHHHHH----HHHHCCCCCCCEEECCCCEECCCCCCCCCCCCC-CCHHHHHHCCCC T ss_conf -887-----874002642859999999999----999869999852532010018999855666898-388889767987 Q ss_pred CCCCCHHHEEECCCCCCCEECCCCCCCC Q ss_conf 1112111000024787301112221110 Q gi|255764461|r 322 VDALRYFLVREIACGKDGFYDKDGLKKR 349 (511) Q Consensus 322 ~D~lR~~l~~~~~~~~D~~Fs~~~~~~~ 349 (511) |+++.=||+..+.....--||.+++++. T Consensus 255 PeAl~NyLalLG~~~~~Eifs~~eli~~ 282 (433) T PRK12410 255 PEAIANYLILLGNKTPKEIFTLDEAIEW 282 (433) T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHE T ss_conf 5999999998289997331468988445 No 63 >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. Probab=99.20 E-value=1.8e-10 Score=96.41 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=80.2 Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32110221021345565312332103--4555895565667899999999998775035899999999999999788654 Q gi|255764461|r 353 DLANGIGNLVSRSVSMILKDYDGMIP--TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDA 430 (511) Q Consensus 353 ~L~~~lgN~~~R~~~f~~k~~~g~ip--~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511) .+.+|+|| ++ +|+..+.++..| ....+++.|+|+++++++++++++++||+|+|+.|++.|++|+...|+|++. T Consensus 9 ~F~nKLWN-a~---rF~~~~~~~~~~~~~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~dwYie~ 84 (117) T cd07375 9 AFLNRLYR-LL---SFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDE 84 (117) T ss_pred HHHHHHHH-HH---HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99989999-99---999856887888656322776279999999899999999999278999999999999936999999 Q ss_pred HCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 187012169999999999999999999999854322 Q gi|255764461|r 431 QKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFV 466 (511) Q Consensus 431 ~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~ 466 (511) .+|. +.+++. ...+++++..++..+..|||||. T Consensus 85 ~K~r-~~~e~~--~~~~~~~L~~vl~~~lkLlhPFt 117 (117) T cd07375 85 LKPA-LQTEEL--REAVLAVLRAALVVLTKLLAPFT 117 (117) T ss_pred HHHH-HCCCHH--HHHHHHHHHHHHHHHHHHHCCCC T ss_conf 6563-048275--79999999999999999819999 No 64 >TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=99.10 E-value=7.4e-09 Score=84.57 Aligned_cols=270 Identities=20% Similarity=0.240 Sum_probs=147.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998832224789789999999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) |=|+|.||||-|||.|.--++||- ..|.=++=|=+||. +-.+....+.+.+.|+.|||++|. T Consensus 8 PSPTG~LHiGg~RTAlFNyLfAr~--~~G~F~lRiEDTD~----------------eR~~~e~~~~i~e~LkWlGi~wDE 69 (513) T TIGR00464 8 PSPTGYLHIGGARTALFNYLFARH--TGGKFILRIEDTDL----------------ERNIEEAEESILEGLKWLGISWDE 69 (513) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEEECCC----------------CCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 888754353368999999999986--38937998753671----------------007244689999888745867466 Q ss_pred -------C---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC-CCC-HH-HHCCCCCCCCCCCCCCCEE-- Q ss_conf -------7---4778888999999998887543102211000101133430-155-66-7211122222222332000-- Q gi|255764461|r 94 -------F---IRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEA-YYN-DD-EVYKGADGQYYNAQHNPVQ-- 158 (511) Q Consensus 94 -------~---~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~-~~~-~~-~v~~~~~~~~~~~~~~p~~-- 158 (511) | ..|.- ...=++...+|.++|.+|+. ||.+.+- -+- +. +...+..+.+.++|.+--+ T Consensus 70 s~~~gG~Y~Py~QS~R---~~~Y~~~~~~Ll~~g~AYrC-----YCs~E~LE~~Rke~~q~~~~~~PrYd~~cr~l~~~~ 141 (513) T TIGR00464 70 SVYVGGNYGPYYQSQR---LDIYKKYIKELLEEGLAYRC-----YCSKEELERLRKEEIQKANKETPRYDGRCRNLHEEE 141 (513) T ss_pred CCCCCCCCEEEHHHHH---HHHHHHHHHHHHHCCCCEEE-----ECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 7568986301110136---78999999999745993442-----278467889989999970885348375334787137 Q ss_pred ---CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC------CCCCCCCC----CCCCCCCCCCC Q ss_conf ---0345-4434466644444344433332100067654577541034567------53234333----77765786422 Q gi|255764461|r 159 ---WMEE-EGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLK------DLSLSRKT----FDWGIKIPDDP 224 (511) Q Consensus 159 ---~~~~-~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~------Dw~ISR~~----~~WGipiP~~~ 224 (511) .+.. ...-+|+-.-.+. ...+...+|.++. |-.+.|- |.-|-|.. --+|+|.=+-- T Consensus 142 ~~~~l~~~~~pvvRfK~P~~~---------~~~F~D~v~G~i~-~~~~~l~~dkrydD~vi~k~DenPeeafG~PTYNfA 211 (513) T TIGR00464 142 IENKLAKGIPPVVRFKIPQEA---------EISFNDQVRGEIT-FEGSELDNDKRYDDLVILKSDENPEEAFGSPTYNFA 211 (513) T ss_pred HHHHHHCCCCCEEEEECCCCC---------CEEECCEEEEEEE-ECCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEE T ss_conf 887644379966887407998---------4245050221588-558667866441561264068883221488642506 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC-CCC---CCCHHCCHHHHHHHHHHHH-CCCCCCCCCCEE-E Q ss_conf 214646024443220012346765431000241100004-564---3210001024776543310-123233343033-0 Q gi|255764461|r 225 QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVI-GKD---ILRFHAIYWPAFLLSANLP-LPKKVFSHGFIL-H 298 (511) Q Consensus 225 ~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~-G~D---ii~Fh~i~~pa~l~~~~~~-~p~~i~~~g~l~-~ 298 (511) . |++ |.+++ | -|+| |-| |.+-| .+++.|.|.+ .|....+. +++ . T Consensus 212 v-vvD---D~lM~-I--------------------ThViRGedHisNTPkQ----I~iy~Alg~~~iP~f~H~p-~I~~~ 261 (513) T TIGR00464 212 V-VVD---DYLMK-I--------------------THVIRGEDHISNTPKQ----ILIYKALGWKRIPTFAHLP-LILNE 261 (513) T ss_pred E-EEE---CCCCC-C--------------------CEEEECCHHHCCCHHH----HHHHHHCCCCCCCCEEEEE-EEECC T ss_conf 7-885---33255-4--------------------5144120200671899----9999970889888155353-58569 Q ss_pred CCCCCCHHHC-CCCCCCCHHHH-CCCCCCCHHHEEECCCCC-------CCEECCCCCCCC Q ss_conf 5860100000-22111000000-221112111000024787-------301112221110 Q gi|255764461|r 299 KGEKISKSLG-NVIDPIEVIEE-VGVDALRYFLVREIACGK-------DGFYDKDGLKKR 349 (511) Q Consensus 299 ~G~KMSKS~G-N~I~~~e~l~~-~g~D~lR~~l~~~~~~~~-------D~~Fs~~~~~~~ 349 (511) +|+||||.-| -+..++++.+. |=|+||==||+.-+.... .--||.+++.+. T Consensus 262 ~gKKLSKRdg~~~~si~q~~~~GyLPEAl~Nyl~lLGW~~~~dlas~~~E~Fs~~elie~ 321 (513) T TIGR00464 262 DGKKLSKRDGKTATSIEQFKEQGYLPEALINYLALLGWSPPDDLASKDQEIFSLEELIEI 321 (513) T ss_pred CCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHC T ss_conf 884001206402576899986688778999999984689652334465663677999820 No 65 >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Probab=99.04 E-value=3.4e-10 Score=94.45 Aligned_cols=264 Identities=20% Similarity=0.250 Sum_probs=138.1 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998832224789789999999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) |-|+|.||||+||+.+..-.+|| +..|.=++-+-+||. +-.++.+.+.+.++++.+||.+|. T Consensus 9 PSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtD~----------------~R~~~~~~~~i~~~l~wlgi~~de 70 (467) T PRK01406 9 PSPTGYLHVGGARTALFNWLFAR--HHGGKFILRIEDTDL----------------ERSTPEAVDAILDGLKWLGLDWDE 70 (467) T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 99998422478999999999999--729969999687998----------------878779999999999987999998 Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC-CCCHHHHCCCCCCCCCCCCCCCEE--C---C-CCCC Q ss_conf --74778888999999998887543102211000101133430-155667211122222222332000--0---3-4544 Q gi|255764461|r 94 --FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEA-YYNDDEVYKGADGQYYNAQHNPVQ--W---M-EEEG 164 (511) Q Consensus 94 --~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~--~---~-~~~~ 164 (511) |. ..+....=+++..+|.++|.+|.. ||.+.+- -........|..+.+.+.|.+-.+ . . +.+. T Consensus 71 ~p~~---QS~r~~~y~~~~~~L~~~g~aY~c-----fcs~e~l~~~r~~~~~~~~~~~Y~~~~r~l~~~~~~~~~~~g~~ 142 (467) T PRK01406 71 GPYR---QSERFDRYKEVAEQLLEKGKAYYC-----YCTPEELEAMREEQLARGEPPRYDGRCRDLTPEEVAAREAEGRP 142 (467) T ss_pred CCEE---HHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCC T ss_conf 8861---744899999999999984998644-----77899999869999847999888855533898788767646998 Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf --344666444443444333321000676545775410345675323433377765786422214646024443220012 Q gi|255764461|r 165 --YFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTT 242 (511) Q Consensus 165 --~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~ 242 (511) |=|+++. +.-. .+...++.++. +-.+.+-|.-|-|.. |.|.-.-.. |++ |+.++ T Consensus 143 ~viR~k~~~--~~~~---------~~~D~i~G~i~-~~~~~~~D~vi~r~d---g~pty~~a~-vvD---D~~m~----- 198 (467) T PRK01406 143 PVIRFKVPQ--EGEI---------VWDDLVRGEIE-FSNSELDDLVILRSD---GTPTYNLAV-VVD---DHDMG----- 198 (467) T ss_pred CEEEEECCC--CCCE---------EEEHHHCCCCC-CCCCCCCCEEEEECC---CCCEEEECC-CCC---CCCCC----- T ss_conf 259986688--8865---------76403046655-575556881688069---983342020-057---62368----- Q ss_pred CCCCCCCCCCCCCCCCCHHCC-CCCC---CCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHH Q ss_conf 346765431000241100004-5643---210001024776543310123233343033-05860100000221110000 Q gi|255764461|r 243 GYLDNPDGSKAKFWPADLHVI-GKDI---LRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVI 317 (511) Q Consensus 243 ~~~~~~~~~~~~~w~~d~~~~-G~Di---i~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l 317 (511) --|+| |-|- .+-|.+ +..++|.+.|... ++.+++ .+|+||||.-| .+...++. T Consensus 199 ----------------it~virg~d~~~~t~~~~~----l~~~l~~~~p~~~-H~pli~~~~g~kLSKR~~-~~~i~~~~ 256 (467) T PRK01406 199 ----------------ITHVIRGEDHLSNTPRQIL----LYEALGWEVPVFA-HLPLILGEDGKKLSKRHG-ATSVMQYR 256 (467) T ss_pred ----------------CCEEECCCCCHHHHHHHHH----HHHHHCCCCCEEE-EEECEECCCCCCCCCCCC-CCCHHHHH T ss_conf ----------------8654037535888999999----9998389997167-301114899981556688-52199999 Q ss_pred HH-CCCCCCCHHHEEECC-CCCCCEECCCCCCCC Q ss_conf 00-221112111000024-787301112221110 Q gi|255764461|r 318 EE-VGVDALRYFLVREIA-CGKDGFYDKDGLKKR 349 (511) Q Consensus 318 ~~-~g~D~lR~~l~~~~~-~~~D~~Fs~~~~~~~ 349 (511) ++ |-|+++.=||+..+. .+.+--||.+++++. T Consensus 257 ~~GylPeAllNyLa~LGWs~~~~Eifsl~eli~~ 290 (467) T PRK01406 257 DMGYLPEALLNYLARLGWSHGDQEIFSLEELIEL 290 (467) T ss_pred HCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHH T ss_conf 8599889999999984799984142058999973 No 66 >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Probab=99.04 E-value=6.1e-10 Score=92.59 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=70.1 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980 Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511) Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511) ++|==.|-|||.||||||++.+....+||. ..|.=++-+-+|| |+--...+.+.+.++++.| T Consensus 10 v~tRFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WL 71 (472) T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTD----------------PERETPEAEDAILEDLEWL 71 (472) T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHC T ss_conf 489779599985426889999997999998--3997999964799----------------8878878999999999866 Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 889886-74778888999999998887543102211 Q gi|255764461|r 88 DISYDD-FIRTTEKRHHDTCRILWKKISDKGDIYKG 122 (511) Q Consensus 88 ~i~~D~-~~rT~~~~~~~~~~~~~~~l~~~G~iy~~ 122 (511) |+..|. -++ ..++...-++...+|.++|.+|.. T Consensus 72 Gl~wde~~~~--QS~r~~~Y~~~~~~Li~~G~AY~c 105 (472) T COG0008 72 GLDWDEGPYY--QSERFDIYYEYAEKLIEKGKAYVC 105 (472) T ss_pred CCCCCCCEEE--HHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 8888976143--642399999999999987996886 No 67 >pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Probab=99.04 E-value=3.4e-10 Score=94.42 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=66.5 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 89999883222478978999999998858980362364370227999999983999899999999999999998088988 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD 92 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D 92 (511) .|-|||+||||||++.+....+||- ..|.=++-+-++|. .-...++.+.|.++++.||+.+| T Consensus 7 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~----------------~R~~~e~~~~I~~dL~wLGl~wD 68 (314) T pfam00749 7 APSPTGYLHIGHARTALFNYLFAKN--YNGKFILRFDDTDP----------------EREKPEYEESILEDLKWLGIKWD 68 (314) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHHCCCCC T ss_conf 8898986448999999999999998--09989999687898----------------86876899999999999537899 Q ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 67-4778888999999998887543102211 Q gi|255764461|r 93 DF-IRTTEKRHHDTCRILWKKISDKGDIYKG 122 (511) Q Consensus 93 ~~-~rT~~~~~~~~~~~~~~~l~~~G~iy~~ 122 (511) .= ++ ..++...-++...+|.++|.+|.. T Consensus 69 e~~~~--QS~r~~~Y~~~~~~L~~~g~aY~C 97 (314) T pfam00749 69 EKPYY--QSDRFDIYYKYAEELIEKGLAYVC 97 (314) T ss_pred CCCEE--HHCCHHHHHHHHHHHHHCCCCCCC T ss_conf 88355--202099999999999974995225 No 68 >PRK04156 gltX glutamyl-tRNA synthetase; Provisional Probab=99.01 E-value=1.6e-09 Score=89.49 Aligned_cols=282 Identities=17% Similarity=0.170 Sum_probs=144.2 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980 Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511) Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511) .||-=+|-|||+||||||++.+.-..+||- ..|.=++-+-+||. +. +.-..++.+.+.++++.| T Consensus 101 V~tRFaP~P~G~LHiGhar~al~N~~~Ak~--~~G~~iLR~eDTdp-----------~~---~r~~~e~~~~I~~dl~WL 164 (566) T PRK04156 101 VVMRFAPNPSGPLHLGHARAAILNDEYAKR--YGGKFILRFEDTDP-----------RT---KRPDPEAYDMIREDLKWL 164 (566) T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC-----------CC---CCCCHHHHHHHHHHHHHH T ss_conf 899528699987618999999996999998--09989999658883-----------32---556378999999999982 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCC Q ss_conf 88988674778888999999998887543102211000101133430155667211122222222332000034544344 Q gi|255764461|r 88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFF 167 (511) Q Consensus 88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~ 167 (511) |+.+|.-+++| ++...-.+...+|.++|.+|.. +|..++ +-.. ...+..|.+...+++ ++ T Consensus 165 G~~~de~~~qS--dr~~~y~~~a~~Li~~G~AY~c-----~c~~ee-~~~~-----r~~~~~~p~R~~~~e----~n--- 224 (566) T PRK04156 165 GVKPDEVVIQS--DRLEIYYEYARKLIEMGGAYVC-----TCDPEE-FKEL-----KDKGEACPHRDQSPE----EN--- 224 (566) T ss_pred CCCCCCCEEHH--HHHHHHHHHHHHHHHCCCEEEC-----CCCHHH-HHHH-----HHCCCCCCCCCCCHH----HH--- T ss_conf 99978016657--6199999999999987992777-----899999-9999-----865876876689978----88--- Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 66644444344433332100067654577541034567532343337776578642221464602444322001234676 Q gi|255764461|r 168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN 247 (511) Q Consensus 168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~ 247 (511) +..|++.+..-+......+ ..|.. ++.-...++||.+-|-. ..|-|-..++ .-||. T Consensus 225 -l~~~~~m~~g~~~~g~~vl---R~K~d-~~~~n~~~rD~v~~Ri~---~~~H~r~g~k-~~v~P--------------- 280 (566) T PRK04156 225 -LELWEKMLDGEYKEGEAVV---RIKTD-LNHPNPAVRDWVAFRII---DTPHPRTGDK-YRVWP--------------- 280 (566) T ss_pred -HHHHHHHHCCCCCCCCEEE---EEECC-CCCCCCCCCCCEEEEEC---CCCCCCCCCC-CCCCC--------------- T ss_conf -8899876514566787699---99722-67898632235567851---6777635775-44464--------------- Q ss_pred CCCCCCCCCCCCHHCC-------CCCC---CCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHC------CCC Q ss_conf 5431000241100004-------5643---21000102477654331012323334303305860100000------221 Q gi|255764461|r 248 PDGSKAKFWPADLHVI-------GKDI---LRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLG------NVI 311 (511) Q Consensus 248 ~~~~~~~~w~~d~~~~-------G~Di---i~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~G------N~I 311 (511) .-+|+- +.|-|++ |+|- .+-|.. ++.+.|...|.. +..|-|.++|-.||||+= +.+ T Consensus 281 -tYdfa~--~idD~l~gITHviRg~e~~~~t~~q~~----ly~~lg~~~P~~-~~fgRln~~~~vlSKrkl~~lVe~g~v 352 (566) T PRK04156 281 -LMNFAV--AVDDHLLGVTHVLRGKDHIVNTEKQRY----IYKYFGWEYPEY-IHYGRLKIEGFVLSTSKIRKGIESGEY 352 (566) T ss_pred -CCCEEE--EEEHHHCCCCCEEECCCCCCCHHHHHH----HHHHCCCCCCEE-EEEEEEECCCEEEEHHHHHHHHHCCCC T ss_conf -424002--451110478715644301134477899----999729877505-777677515313108899999862988 Q ss_pred CCCC--------HHH--HCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHH Q ss_conf 1100--------000--0221112111000024787301112221110013321102 Q gi|255764461|r 312 DPIE--------VIE--EVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGI 358 (511) Q Consensus 312 ~~~e--------~l~--~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~l 358 (511) +.-| .+. .|.++++|-|....+.-..|+.++|+.+.+. |.+.++.- T Consensus 353 ~GWDDPRlpTl~glrRRG~~peAir~f~~~iGvsk~d~~i~~~~L~a~-nRk~lD~~ 408 (566) T PRK04156 353 SGWDDPRLPTLRALRRRGILPEAIRELIIEVGLKETDATISWENLYAL-NRKIIDPI 408 (566) T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHHHHHC T ss_conf 888788427789998679999999999999685544532259999999-99876515 No 69 >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Probab=98.90 E-value=1.1e-08 Score=83.43 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=67.5 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980 Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511) Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511) +||==-|-|+|+||||||++.+....+||- ..|.=++=+-++|. .-....+.+.+.++++.+ T Consensus 5 ~v~RFAPSPTG~LHlG~~rtAl~n~l~Ar~--~~G~~iLRIEDtD~----------------~R~~~~~~~~Il~~L~wl 66 (299) T PRK05710 5 YVGRFAPSPSGPLHFGSLVSALLSYLDARA--QGGRWLVRIEDIDP----------------PREVPGAAAAILADLEWL 66 (299) T ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHH T ss_conf 857179699985328999999999999998--29989998677897----------------658768999999999995 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 88988674778888999999998887543102211 Q gi|255764461|r 88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122 (511) Q Consensus 88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~ 122 (511) |+.+|-=+. ...++.+.=+++.++|.++|.+|.. T Consensus 67 Gl~wD~~~~-~QS~R~~~Y~~~~~~L~~~g~aY~C 100 (299) T PRK05710 67 GLHWDGPVR-RQSERHDAYRAALDRLAAAGLVYPC 100 (299) T ss_pred CCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 688887404-8885899999999999976990250 No 70 >cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains. Probab=98.73 E-value=1.1e-07 Score=76.00 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=61.6 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 89999883222478978999999998858980362364370227999999983999899999999999999998088988 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD 92 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D 92 (511) .|-|||.||||||++.+....+||- ..|.=++-+-++| |+....++.+.+.++++.+|+.+| T Consensus 7 APsPtG~LHiG~ar~al~n~~~Ak~--~~G~~~LRieDTD----------------~~r~~~e~~~~I~~dL~wLGl~~d 68 (223) T cd00418 7 APSPTGYLHIGHARAALLNYLYAKK--YGGKFILRFDDTD----------------PEREVEEAEDSILEDLKWLGIKWD 68 (223) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 8898985428999999999999998--5998999723688----------------640188899999999999189999 Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6-747788889999999988875431 Q gi|255764461|r 93 D-FIRTTEKRHHDTCRILWKKISDKG 117 (511) Q Consensus 93 ~-~~rT~~~~~~~~~~~~~~~l~~~G 117 (511) . -++ ..++...-++...+|.++| T Consensus 69 ~~~~~--QS~r~~~y~~~~~~Li~~G 92 (223) T cd00418 69 EGPYY--QSDRFDIYYEYAEKLIEEG 92 (223) T ss_pred CCEEE--HHHHHHHHHHHHHHHHHCC T ss_conf 86853--8758999999999997569 No 71 >cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. Probab=98.66 E-value=2.3e-07 Score=73.54 Aligned_cols=58 Identities=29% Similarity=0.415 Sum_probs=46.8 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH Q ss_conf 1799788899998832224789789999999988589803623643702279999999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQ 63 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~ 63 (511) |++|--.=|-|+||+|+||+|+.+.+|.++|-++..|++|.=..--.|.|+.+..-+. T Consensus 1 KI~vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~ 58 (267) T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGLLIL 58 (267) T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHH T ss_conf 9598855899999850310363899999999999879958898850786099999999 No 72 >KOG1149 consensus Probab=98.38 E-value=5.4e-05 Score=56.00 Aligned_cols=267 Identities=16% Similarity=0.170 Sum_probs=125.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99998832224789789999999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) |-|.|-||||-+|+.+.-=++||- ..|.=++-+-+||. +-++.--.+.+.++++.+||.+|. T Consensus 40 PSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~nl~~DE 101 (524) T KOG1149 40 PSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWANLDWDE 101 (524) T ss_pred CCCCCCEEHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 898763220138999999999873--28848998515651----------------000464477899999862999655 Q ss_pred CCCC---CCH----HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC---------------------CCCHHHHCCCC Q ss_conf 7477---888----8999999998887543102211000101133430---------------------15566721112 Q gi|255764461|r 94 FIRT---TEK----RHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEA---------------------YYNDDEVYKGA 145 (511) Q Consensus 94 ~~rT---~~~----~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~---------------------~~~~~~v~~~~ 145 (511) =.+. -.| +-.++-++..++|.+.|++|+. ||..... -++++++.. T Consensus 102 gP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC-----FCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~-- 174 (524) T KOG1149 102 GPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC-----FCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ-- 174 (524) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHH-- T ss_conf 888689888524578999999999999865975674-----1588899999886531478874020213357999999-- Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22222223320000345443446664444434443333210006765457754103456753234333777657864222 Q gi|255764461|r 146 DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQ 225 (511) Q Consensus 146 ~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~ 225 (511) ..+.|.|- .+=|++++-...+.+ .+..++.--++.-.-|.-|-+.. |.|.-..-+ T Consensus 175 ----~lakg~pf------~iRFrl~~~~~~f~D------------LvyG~v~~~~d~~~gD~VvmKSD---gfPTYHfAn 229 (524) T KOG1149 175 ----KLAKGTPF------TIRFRLPKESPPFTD------------LVYGKVNHNVDSNEGDPVVMKSD---GFPTYHFAN 229 (524) T ss_pred ----HHHCCCCE------EEEEECCCCCCCHHH------------HHHHHHHCCCCCCCCCCEEEECC---CCCCEEEEE T ss_conf ----97469980------699736877887024------------44202102555567981798148---986212221 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCH Q ss_conf 14646024443220012346765431000241100004564321000102477654331012323334303305860100 Q gi|255764461|r 226 YIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISK 305 (511) Q Consensus 226 ~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSK 305 (511) |++ |.++| ||..-. -+.|-|.. + =|+++ ..|.|.++|+-+..-=.+..+|.|.|| T Consensus 230 -VVD---Dh~M~-IsHViR-------GeEWlpST----~-----KH~lL----YkAfgW~pPkFaHlpLl~n~d~sKLSK 284 (524) T KOG1149 230 -VVD---DHLMG-ISHVIR-------GEEWLPST----L-----KHILL----YKAFGWQPPKFAHLPLLLNPDGSKLSK 284 (524) T ss_pred -EEC---CHHCC-HHHEEE-------CCHHCCCC----H-----HHHHH----HHHHCCCCCCEEEEEEEECCCCCHHHH T ss_conf -222---00012-021130-------20105640----8-----89999----998289998513423466588540002 Q ss_pred HHCCCCCCCCHHHH-CCCCCCCHHHEEEC--CCCCCCEECCCCCCCCHHHHHHH Q ss_conf 00022111000000-22111211100002--47873011122211100133211 Q gi|255764461|r 306 SLGNVIDPIEVIEE-VGVDALRYFLVREI--ACGKDGFYDKDGLKKRVNADLAN 356 (511) Q Consensus 306 S~GN~I~~~e~l~~-~g~D~lR~~l~~~~--~~~~D~~Fs~~~~~~~~n~~L~~ 356 (511) ..|-+ ....+.++ |=|+++==|++..+ ....+--|+.+++++..|=+.++ T Consensus 285 RqgD~-~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~lt 337 (524) T KOG1149 285 RQGDA-SVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLT 337 (524) T ss_pred HCCCC-HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHC T ss_conf 03752-388898748773999999998088864102354699999883633204 No 73 >PRK05347 glutaminyl-tRNA synthetase; Provisional Probab=98.35 E-value=3.2e-06 Score=65.10 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=67.3 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 81799788899998832224789789999999988589803623643702279999999839998999999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA 84 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 84 (511) +.=+||-=+|=|||.||||||...++-+-+|+- ..|.=.+-.-+|+ |..--.+|.+.+++++ T Consensus 27 ~gkVvtRFpPePnG~LHiGHaka~~lN~~~a~~--y~G~~~LRfDDTN----------------P~~e~~e~~~~I~~d~ 88 (556) T PRK05347 27 HTKVHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTN----------------PEKEDQEYVDSIKEDV 88 (556) T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----------------CCCCCHHHHHHHHHHH T ss_conf 683998049899987618888999866999997--0998999835899----------------8745489999999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 980889886747788889999999988875431022110 Q gi|255764461|r 85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGC 123 (511) Q Consensus 85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~ 123 (511) +.||+.++.=+ |.+..+-....+...+|.++|.+|..+ T Consensus 89 ~wLg~~~~~~i-~~~Sd~f~~~y~~a~~LI~~g~AYv~~ 126 (556) T PRK05347 89 RWLGFDWGGEL-RYASDYFDQLYEYAVELIKKGKAYVDD 126 (556) T ss_pred HHCCCCCCCEE-EEEHHHHHHHHHHHHHHHHCCCCEECC T ss_conf 87499889827-881342999999999998648813568 No 74 >cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Probab=98.31 E-value=2.9e-06 Score=65.41 Aligned_cols=92 Identities=22% Similarity=0.202 Sum_probs=68.4 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 97888999988322247897899999999885898036236437022799999998399989999999999999999808 Q gi|255764461|r 9 ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLD 88 (511) Q Consensus 9 vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~ 88 (511) ||-=.|-|||.||||||++.+....+||- ..|.=++-+-+|| |+....++.+.+.++++.+| T Consensus 3 ~tRFAPsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDTD----------------~~r~~~e~~~~I~~~L~wLG 64 (238) T cd00807 3 VTRFPPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDTN----------------PKKEDEEAYDSILEDLEWLG 64 (238) T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCCHHHHHHHHHHHHHC T ss_conf 69608898986438999999999999998--2996999867789----------------87676168999999999848 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 89886747788889999999988875431022 Q gi|255764461|r 89 ISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120 (511) Q Consensus 89 i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy 120 (511) +.+|.-+..+ ++.+.-++...+|.++|.+| T Consensus 65 l~~De~~~QS--~r~~~y~~~a~~Li~~G~AY 94 (238) T cd00807 65 IKPDEITYAS--DYFDLYYEYAEKLIKMGKAY 94 (238) T ss_pred CCCCCCEECC--CCHHHHHHHHHHHHHCCCCC T ss_conf 9999315636--67999999999999879987 No 75 >TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=98.28 E-value=6.4e-07 Score=70.25 Aligned_cols=278 Identities=18% Similarity=0.208 Sum_probs=143.6 Q ss_pred EEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHHHHH Q ss_conf 997-888999988322247897899999999885898036236437022799999998399989--99999999999999 Q gi|255764461|r 8 YIS-TAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTK--VFVDQNSRNFRDMA 84 (511) Q Consensus 8 ~vt-~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~--e~~~~~~~~~~~~~ 84 (511) .|+ .| |-||||||||||+..|+=+=+||- ..|.=.+=+-+|| |+ .--.+..+-+.+++ T Consensus 102 VV~RFa-PnPsGpLhiGhArAa~lN~~fa~~--Y~GklIlR~dDTd----------------P~tkr~~~Eayd~i~eDL 162 (600) T TIGR00463 102 VVMRFA-PNPSGPLHIGHARAAILNQYFAKK--YEGKLILRFDDTD----------------PRTKRVKPEAYDMILEDL 162 (600) T ss_pred EEEECC-CCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEECCC----------------CCCCCCCHHHHHHHHHHH T ss_conf 577318-545458752335422320466854--1881799975587----------------887888724665248778 Q ss_pred HHHCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCC Q ss_conf 980889886747788--889999999988875431022110001011334301556672111222222223320000345 Q gi|255764461|r 85 DVLDISYDDFIRTTE--KRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEE 162 (511) Q Consensus 85 ~~~~i~~D~~~rT~~--~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~ 162 (511) +.|||..|.-+=.|+ +.+++ .-.+|.+.|.+|-.. |+ ++.+=+...+|.-|.+-..-++ + T Consensus 163 dwLG~k~Dev~y~Sdr~~~yYd----Y~~kLIe~G~AY~C~-----c~------~Eefre~r~~G~~c~~R~~sve--e- 224 (600) T TIGR00463 163 DWLGVKGDEVVYQSDRIEIYYD----YARKLIEMGKAYVCD-----CS------PEEFRELRNKGVACACRDRSVE--E- 224 (600) T ss_pred HHCCCCEEEEEEEECCHHHHHH----HHHHHHHCCCCEECC-----CC------CHHHHHHHCCCCCCCCCCCCHH--H- T ss_conf 7528420068983053015689----999998669834327-----98------4468886338887777875124--5- Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 44344666444443444-33332100067654577541034567532343337776578642221464602444322001 Q gi|255764461|r 163 EGYFFRLSAYQDKLLSY-YESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTT 241 (511) Q Consensus 163 ~~~f~~l~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~ 241 (511) .|.-|.+++++- .+.....+ .+|.- ++-....++||.|=|=. .=-+|-.|+. .++|==+ T Consensus 225 -----nL~~wte~M~~G~~E~~~~~v---R~KtD-~~h~npaiRD~v~fR~~-~~~HprtG~~-Y~vYP~~--------- 284 (600) T TIGR00463 225 -----NLEIWTEEMLEGEEEEGKVVV---RVKTD-LKHKNPAIRDWVIFRIV-KTPHPRTGDK-YKVYPTM--------- 284 (600) T ss_pred -----HHHHHHHHHCCCCCCCCCEEE---EEEEC-CCCCCCCCCCCCEEEEE-CCCCCCCCCC-EEECCCC--------- T ss_conf -----788999871577301660289---98713-67887863476135777-5788886882-2681222--------- Q ss_pred CCCCCCCCCCCCCCCCCCHHCC-------CCCCCCH--HCCHHHHHHHHHHHHCCCCCCCCCCEEECCC-CCCHH-HCCC Q ss_conf 2346765431000241100004-------5643210--0010247765433101232333430330586-01000-0022 Q gi|255764461|r 242 TGYLDNPDGSKAKFWPADLHVI-------GKDILRF--HAIYWPAFLLSANLPLPKKVFSHGFILHKGE-KISKS-LGNV 310 (511) Q Consensus 242 ~~~~~~~~~~~~~~w~~d~~~~-------G~Dii~F--h~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~-KMSKS-~GN~ 310 (511) +|.- |.+-|+. |||-+-- -.-| +.+-.|+.+|+ +.+-|++.++-- +.|+| ..-. T Consensus 285 ---------dF~v--ai~DhllGvTH~LRgkd~~~n~~~q~Y---~Y~y~gw~~p~-~~hyg~~ki~~v~~Lsts~~~~~ 349 (600) T TIGR00463 285 ---------DFSV--AIDDHLLGVTHVLRGKDHIDNERKQQY---IYKYFGWELPE-FIHYGRLKINDVRTLSTSSIKKG 349 (600) T ss_pred ---------CCCC--HHHHHCCCCHHHHHHHHHHHHHHHHHH---HHHHHCCCCCC-EEEEEEEEHHHHHHHHHHHHHHH T ss_conf ---------6654--243210232032310245521267889---99983223880-23441155113323210345411 Q ss_pred CCCCCH--------------HH--HCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHH Q ss_conf 111000--------------00--0221112111000024787301112221110013321102 Q gi|255764461|r 311 IDPIEV--------------IE--EVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGI 358 (511) Q Consensus 311 I~~~e~--------------l~--~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~l 358 (511) |.-.++ +. .+-|+++|=++++.++-..|+++||+.+=+ .|..+++.- T Consensus 350 i~~g~y~GnWDDpRLpTlRa~rRRG~~pEai~~~~~~~G~~~nd~~~sw~~lYA-~Nk~~id~~ 412 (600) T TIGR00463 350 IVRGDYSGNWDDPRLPTLRAVRRRGIKPEAIREFMLSIGVKRNDVKLSWKNLYA-LNKKIIDKK 412 (600) T ss_pred HHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHH-HHHHHCCCC T ss_conf 012651246568886302332117881578999999719961244312567766-235540324 No 76 >KOG1147 consensus Probab=97.96 E-value=7e-05 Score=55.16 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=66.9 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 97888999988322247897899999999885898036236437022799999998399989999999999999999808 Q gi|255764461|r 9 ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLD 88 (511) Q Consensus 9 vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~ 88 (511) ||-=+|-|||.||||||...++-- |...++.--+.+-=.|+ .|..=-+++...+.+++..|| T Consensus 202 v~RFPPEpSGyLHIGHAKAALLNq----Yfa~~~~G~LIvRFDDT--------------NPaKE~~eFe~~IleDl~~Lg 263 (712) T KOG1147 202 VTRFPPEPSGYLHIGHAKAALLNQ----YFAQAYQGKLIVRFDDT--------------NPAKENEEFEDVILEDLSLLG 263 (712) T ss_pred EEECCCCCCCEEEHHHHHHHHHHH----HHHHHCCCEEEEEECCC--------------CCCHHHHHHHHHHHHHHHHHC T ss_conf 785698977602411679999999----99985286299982699--------------920216789999987788708 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 89886747788889999999988875431022110001 Q gi|255764461|r 89 ISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSG 126 (511) Q Consensus 89 i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~ 126 (511) |.+|.++.|+ .|-......-.+|...|-+|..++++ T Consensus 264 Ikpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp~ 299 (712) T KOG1147 264 IKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712) T ss_pred CCCCEEEECH--HHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 5764445313--55999999999998637431369968 No 77 >cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Probab=97.84 E-value=6.8e-05 Score=55.27 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=48.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 89999883222478978999999998858980362364370227999999983999899999999999999998088988 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD 92 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D 92 (511) .|-|||.||||||++.+....+||- ..|.=++-+-++|. +--..++.+.+.++++.+|+.+| T Consensus 7 APsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~LRieDtD~----------------~R~~~e~~~~I~~dL~wLGl~wD 68 (239) T cd00808 7 APSPTGYLHIGGARTALFNYLFAKK--HGGKFILRIEDTDQ----------------ERSVEEAEEAILEDLKWLGIDWD 68 (239) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCC T ss_conf 8898985338999999999999998--19989998456898----------------87876999999999998188877 Q ss_pred C Q ss_conf 6 Q gi|255764461|r 93 D 93 (511) Q Consensus 93 ~ 93 (511) . T Consensus 69 e 69 (239) T cd00808 69 E 69 (239) T ss_pred C T ss_conf 4 No 78 >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. Probab=97.67 E-value=0.00073 Score=47.64 Aligned_cols=119 Identities=14% Similarity=0.198 Sum_probs=81.2 Q ss_pred HHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCC--CC---CCCCHHHHHHH Q ss_conf 002211121110000247873011122211100133211022102-1345565312332103--45---55895565667 Q gi|255764461|r 318 EEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIP--TP---GAFTESDESIL 391 (511) Q Consensus 318 ~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip--~~---~~~~~~D~~ll 391 (511) ++.|.|++||++++. ...++.+|+++.+... +++ -+-+.... .|+.+...|.-....+ .. ....+.+..++ T Consensus 1 e~Ig~~Airy~~L~~-~~~~~~~FD~d~~~~~-~gn-t~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li 77 (156) T cd07956 1 EEVGVGAVKYQDLSN-KRIKDYTFDWERMLSF-EGD-TGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLI 77 (156) T ss_pred CCCCHHHHHHHHHHC-CCCCCCEECHHHHHCC-CCC-CCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHH T ss_conf 964235788899863-8999845529998623-689-8511248999999999972454533222542004998999999 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH Q ss_conf 899999999998775035899999999999999788654187012169999 Q gi|255764461|r 392 SVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPD 442 (511) Q Consensus 392 ~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~ 442 (511) ..+.+.++.+..+.++++.+..+..+.+++...|+|.+..+ ..+++.+ T Consensus 78 ~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~~---Ii~~~~~ 125 (156) T cd07956 78 LLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP---VLGAEEE 125 (156) T ss_pred HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCHH T ss_conf 99965728999999970706999999999999999997498---8789889 No 79 >TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=97.59 E-value=0.0018 Score=44.78 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=60.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHH-----HHH---HHH-HCCC------C-- Q ss_conf 1799788899998832224789789999999988589803623643702279-----999---999-8399------9-- Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQK-----IAK---AAQ-NAGV------T-- 68 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~-----i~~---~A~-~~g~------~-- 68 (511) .+.|.++ -.|+|.+|+|+++..+.+|.++|-++-.|-++.++--+|++..- ..- ... -.|. . T Consensus 20 ~~~~~~g-~~p~g~~~~g~~~~~~~~d~~~~~l~~~g~~~~~~~~~d~~d~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~ 98 (539) T TIGR00467 20 LYTVASG-ITPSGHIHLGNLREVLTADAIARALLDSGGEAKLIYIADDYDPLRKLYPFLPEQEELETYLGLPLTKIPDPE 98 (539) T ss_pred CEEEECC-CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 1033204-676660330421456768888888750676147888524510344304567506788887410122067854 Q ss_pred --HHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf --8999999999999999980889886 Q gi|255764461|r 69 --TKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 69 --p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) ...+++.+...+.+.+..+|+.... T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ 125 (539) T TIGR00467 99 GCCDSYAEHFLRPFLESLPVLGIPPEF 125 (539) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 202456666665667642211676021 No 80 >KOG1148 consensus Probab=97.35 E-value=0.00094 Score=46.86 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=62.3 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980 Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511) Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511) .+|-=||=|||-||||||-.--.-=-+|++ .| -|-|.--+|+ .|+.=.++|.+.|+++...| T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk~---~~-G~cyLRfDDT--------------NPEkEee~yf~sI~e~V~WL 310 (764) T KOG1148 249 VVTRFPPEPNGILHIGHAKAINVNFGYAKA---HG-GVCYLRFDDT--------------NPEKEEEEYFESIKEMVAWL 310 (764) T ss_pred EEEECCCCCCCEEEECCHHHEEECHHHHHH---HC-CEEEEECCCC--------------CCCHHHHHHHHHHHHHHHHH T ss_conf 677179898856563213430101244665---09-7689962789--------------82033689999999999871 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 88988674778888999999998887543102211 Q gi|255764461|r 88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122 (511) Q Consensus 88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~ 122 (511) |... |--|.+..|-...-+.-..|..+|.+|.. T Consensus 311 G~~P--~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764) T KOG1148 311 GFEP--YKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764) T ss_pred CCCC--EEEECCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 8785--04412416799999999999866864677 No 81 >KOG4426 consensus Probab=97.22 E-value=0.0064 Score=40.68 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=42.9 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH Q ss_conf 88179978889999883222478978999999998858980362364370227 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ 56 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~ 56 (511) .||.+|...-|..--..|+||+|+.|.+|.+.|-+...|++|+-+--.-+-|| T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGT 239 (656) T KOG4426 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGT 239 (656) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH T ss_conf 03689835897377776310456566768899999860761675224550577 No 82 >PRK08560 tyrosyl-tRNA synthetase; Validated Probab=97.08 E-value=0.0034 Score=42.73 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=47.1 Q ss_pred CCCCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 88881799788-89999883222478978999999998858980362364370227999999983999899999999999 Q gi|255764461|r 2 KEREKLYISTA-IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 2 ~~~~~~~vt~~-~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) ++++++.|-++ -| +|++||||..+. .-+++++. .|++|.+.-++. |.. + ....+|++ +.+....+ T Consensus 26 ~~~~~~rv~~G~~P--TG~lHLGh~v~~---~k~~~lQd-~g~~~~~~IaD~-hA~-i-----~~~~~~~~-~r~~~~~~ 91 (333) T PRK08560 26 ESGEEPKAYIGFEP--SGFIHLGHLVTM---NKLADLQK-AGFKVTVLLADW-HAW-L-----NDKGDLEE-IRKVAEYN 91 (333) T ss_pred HCCCCCEEEECCCC--CCCCHHHHHHHH---HHHHHHHH-CCCCEEEEECCC-EEE-C-----CCCCCHHH-HHHHHHHH T ss_conf 46999889966178--984538999999---99999997-799189996132-233-3-----89999999-99999999 Q ss_pred HHHHHHHCCCCC Q ss_conf 999998088988 Q gi|255764461|r 81 RDMADVLDISYD 92 (511) Q Consensus 81 ~~~~~~~~i~~D 92 (511) .+++.++|++.+ T Consensus 92 ~~~~~A~GlDp~ 103 (333) T PRK08560 92 KKVFEALGLDPD 103 (333) T ss_pred HHHHHHHCCCCC T ss_conf 999997078964 No 83 >PRK12284 tryptophanyl-tRNA synthetase; Reviewed Probab=97.02 E-value=0.0064 Score=40.69 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=57.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC--- Q ss_conf 99883222478978999999998858980362364370227999999983999899999999999999998088988--- Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD--- 92 (511) Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D--- 92 (511) |+|.|||||-.+.+.--+ +.....+++++|.- .|-|-+- .-.+|++ ..++.-++..+|=++||+.+ T Consensus 11 PTG~lHLGNY~GAik~~v--~~~~q~~~e~f~fI-AD~HALT-------~~~dp~~-l~~~t~eiaa~~LA~GlDPekst 79 (436) T PRK12284 11 TTGTPHLGNYVGAIRPAI--AASRQPGVESFYFL-ADYHALI-------KCDDPAR-IQRSTLEIAATWLAAGLDPERVT 79 (436) T ss_pred CCCCCHHHHHHHHHHHHH--HHHHCCCCCEEEEE-ECCCCCC-------CCCCHHH-HHHHHHHHHHHHHHCCCCCCCCE T ss_conf 899752888999999999--98638998669999-6400056-------8899999-99999999999998586802225 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 67477888899999999888754310 Q gi|255764461|r 93 DFIRTTEKRHHDTCRILWKKISDKGD 118 (511) Q Consensus 93 ~~~rT~~~~~~~~~~~~~~~l~~~G~ 118 (511) .|....-|+|.+.. +++.-+.-.|. T Consensus 80 ~f~QS~VPE~~EL~-wiLs~~t~~g~ 104 (436) T PRK12284 80 FYRQSDIPEIPELT-WLLTCVAGKGL 104 (436) T ss_pred EEECCCCHHHHHHH-HHHHCCCCHHH T ss_conf 88788877999999-99976384888 No 84 >PRK12285 tryptophanyl-tRNA synthetase; Reviewed Probab=97.01 E-value=0.012 Score=38.80 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=49.1 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 88881799788899998832224789789999999988589803623643702279999999839998999999999999 Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) ++.++++|-|+ --|+|++||||+.++.. ++|+.-.|-+|...-.+|+ +-.. .+.+-+|.-....++.. T Consensus 62 e~g~~f~lyTG-rgPSg~mHlGH~ipf~~----~k~lQ~fg~~l~I~iaDdE---kfl~----r~~t~ee~~~~a~eeni 129 (369) T PRK12285 62 KNGKPFAVYTG-RMPSGKMHIGHKMVFDQ----LKWFQEFGADVYIQIADLE---AYSA----RGMSLEETREIAIEEYI 129 (369) T ss_pred HCCCCEEEEEC-CCCCCCCCCCHHHHHHH----HHHHHHCCCCEEEEECCHH---HHHH----CCCCHHHHHHHHHHHHH T ss_conf 83997699936-68888755201509999----9999987996899935579---9872----79989999999999888 Q ss_pred HHHHHHCCCCC Q ss_conf 99998088988 Q gi|255764461|r 82 DMADVLDISYD 92 (511) Q Consensus 82 ~~~~~~~i~~D 92 (511) .++-++|...| T Consensus 130 kdiiAlGfdp~ 140 (369) T PRK12285 130 LNYIALGFDPD 140 (369) T ss_pred HHHHHCCCCCC T ss_conf 88987087800 No 85 >cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain. Probab=97.00 E-value=0.00027 Score=50.86 Aligned_cols=45 Identities=27% Similarity=0.152 Sum_probs=28.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH Q ss_conf 899998832224789789999999988589803623643702279999999 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQ 63 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~ 63 (511) .++++|++|+||+.....++.++| +++..+...++++.++...+. T Consensus 3 ~~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 47 (147) T cd02156 3 APGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPIKKLKG 47 (147) T ss_pred EEEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCHHHCCC T ss_conf 986048767899999999999999------769928999789991453378 No 86 >KOG1195 consensus Probab=96.96 E-value=0.014 Score=38.15 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=77.8 Q ss_pred HHHHHHHHCCCCCCCCCCEEEC-CCCCCHHHCCCCCCCCHHHH----------------------------CCCCCCCHH Q ss_conf 7654331012323334303305-86010000022111000000----------------------------221112111 Q gi|255764461|r 278 FLLSANLPLPKKVFSHGFILHK-GEKISKSLGNVIDPIEVIEE----------------------------VGVDALRYF 328 (511) Q Consensus 278 ~l~~~~~~~p~~i~~~g~l~~~-G~KMSKS~GN~I~~~e~l~~----------------------------~g~D~lR~~ 328 (511) ++...|..|.+.+ .|+... ++=||+-+|.++-..|++++ .|.-++..= T Consensus 345 ilk~mg~~~a~~~---qHV~~G~v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~ 421 (567) T KOG1195 345 ILKKMGFDWAKKL---QHVNFGRVQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQ 421 (567) T ss_pred HHHHHCCHHHHHC---CEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999584256435---1441121125435677423189999999999999997365777777887899988745778799 Q ss_pred HEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCCC------CCCCCHH-HHHHHHHHHHHHHH Q ss_conf 0000247873011122211100133211022102-13455653123321034------5558955-65667899999999 Q gi|255764461|r 329 LVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIPT------PGAFTES-DESILSVCSRVLQE 400 (511) Q Consensus 329 l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip~------~~~~~~~-D~~ll~~l~~~~~~ 400 (511) .. .+...++-.|+|+..-+- |.+ -+.+-... +|.-+. +++|....+. ...+++. -..++..+....+- T Consensus 422 d~-k~rr~s~yeF~w~~~~~~-~gd-tg~yLQY~HsRL~Sl-erk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~v 497 (567) T KOG1195 422 DF-KGRRISNYEFSWNRVLSF-EGD-TGPYLQYTHSRLRSL-ERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEV 497 (567) T ss_pred HH-HHHHCCCCEEEHHHHHEE-CCC-CHHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHH T ss_conf 98-887505636770030021-688-447888878789999-98625667044410216651773699999998500899 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998775035899999999999999788654 Q gi|255764461|r 401 IRENMQNQLIHRALAQVISLVSEVDRYFDA 430 (511) Q Consensus 401 v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511) +..++|.++.+..+..++.++..++..... T Consensus 498 ve~s~e~lE~~~lV~YL~~La~a~s~~yk~ 527 (567) T KOG1195 498 VEKSMEQLEPCTLVTYLFKLAHAVSSAYKI 527 (567) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999997624343799999999999867761 No 87 >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=96.84 E-value=0.019 Score=37.26 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=58.7 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 88881799788899998832224789789999999988589-80362364370227999999983999899999999999 Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDG-LDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G-~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) ...++.++|.-.|+ |++||||-.+.+. .+++-..+ ++++|. =.|.|..-+ .+..+++-..+...+. T Consensus 2 ~~~~~~vlSG~~PS--G~lHLGny~ga~~----~~v~~q~~~~~~f~~-IaDlha~t~------~~~~~~~~l~~~~~e~ 68 (314) T COG0180 2 NMKKFRVLSGIQPS--GKLHLGNYLGAIR----NWVLLQEEYYECFFF-IADLHAITV------RQDPTEEDLRQATREV 68 (314) T ss_pred CCCCCEEEECCCCC--CCCCHHHHHHHHH----HHHHHHCCCCCEEEE-EECHHHHHC------CCCCHHHHHHHHHHHH T ss_conf 98885677567889--9752157699999----999985355754999-962777554------8887699999999999 Q ss_pred HHHHHHHCCCCC---CCCCCCCHHHHHHHHHH Q ss_conf 999998088988---67477888899999999 Q gi|255764461|r 81 RDMADVLDISYD---DFIRTTEKRHHDTCRIL 109 (511) Q Consensus 81 ~~~~~~~~i~~D---~~~rT~~~~~~~~~~~~ 109 (511) ..++=++||+++ .|..+.-++|.+....+ T Consensus 69 ~a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l 100 (314) T COG0180 69 AADYLAVGLDPEKSTIFLQSEVPEHAELAWLL 100 (314) T ss_pred HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH T ss_conf 99998704685602799806866799999999 No 88 >cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding Probab=96.79 E-value=0.0073 Score=40.27 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=45.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC--- Q ss_conf 99883222478978999999998858980362364370227999999983999899999999999999998088988--- Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD--- 92 (511) Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D--- 92 (511) |+|++||||..+.+. ...++. .|++|.+.-+++ |.. .. .+.+|++ +.++..+..+++-++|++.+ T Consensus 9 PTG~~HlG~~v~~~k---~~~~~~-~g~~~~i~iaD~-ha~--t~----~~~~~~~-~~~~~~~~~~~~lA~G~Dp~k~~ 76 (282) T cd00806 9 PSGSLHLGHYLGAIR---NWVLQQ-EGYELFFFIADL-HAL--TV----KQSDPEE-LRQNTRENAADYLACGLDPEKST 76 (282) T ss_pred CCCCCHHHHHHHHHH---HHHHHH-CCCCEEEEEECH-HHH--HC----CCCCHHH-HHHHHHHHHHHHHHCCCCHHHEE T ss_conf 897147888999999---999997-899199998043-888--67----9999999-99999999999999198888908 Q ss_pred CCCCCCCHHHHHH Q ss_conf 6747788889999 Q gi|255764461|r 93 DFIRTTEKRHHDT 105 (511) Q Consensus 93 ~~~rT~~~~~~~~ 105 (511) .|..+..++|.+. T Consensus 77 i~~qS~~~~~~el 89 (282) T cd00806 77 IFFQSDVPEHYEL 89 (282) T ss_pred EEEECCCHHHHHH T ss_conf 9983742789999 No 89 >TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=96.72 E-value=0.0018 Score=44.78 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=59.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 8999988322247897899999999885898-036236437022799999998399989999999999999999808898 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGL-DVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISY 91 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~-~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~ 91 (511) ||=|||-|||||+-+-.+-==+|++ .+|. +-+ .|| +.|..=.-+|.+.++.+.+.||... T Consensus 6 PPEPNGYLHIGHaK~I~~NFG~Ak~--y~G~C~LR----FDD-------------TNP~KE~~EY~eSIK~~V~WLGFkw 66 (564) T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGLAKE--YKGTCNLR----FDD-------------TNPVKEDVEYVESIKRDVEWLGFKW 66 (564) T ss_pred CCCCCCCEEHHHHHHHHHHCCCCCC--CCCCEEEE----CCC-------------CCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 8557873001024313442032020--17636442----167-------------8886466017888752222225124 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 8674778888999999998887543102211 Q gi|255764461|r 92 DDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122 (511) Q Consensus 92 D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~ 122 (511) ..=+ |-+..|-......-..|.++|.+|.. T Consensus 67 ~g~~-~YsSDYFD~Ly~~A~~LI~~G~AYV~ 96 (564) T TIGR00440 67 EGKI-RYSSDYFDELYRYAVELIKKGLAYVD 96 (564) T ss_pred CCCE-EECHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 7731-33304688999999999867960675 No 90 >cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Probab=96.65 E-value=0.00081 Score=47.30 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=39.2 Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 998-83222478978999999998858980362364370227---99999998399989999999999999999808898 Q gi|255764461|r 16 PNA-QPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ---KIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISY 91 (511) Q Consensus 16 ~ng-~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~---~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~ 91 (511) |+| .|||||..+.+. +.+. ...|+++.++-|.- |+. |--....+...+ .+.+....+.+.+++.+++.+. T Consensus 9 PTG~~lHLGhyv~~~~---~~~~-q~~g~~~~~~IaD~-hAli~dp~~~~~~r~~~~-~e~i~~~~~~~~~~~~~~~~~~ 82 (268) T cd00805 9 PTAPSLHLGHLVPLMK---LRDF-QQAGHEVIVLIGDA-TAMIGDPSGKSEERKLLT-EEEILENAKYIKKQIKAILKFI 82 (268) T ss_pred CCCCCCCHHHHHHHHH---HHHH-HHCCCCEEEEEECC-EEECCCCCCCCHHHCCCC-HHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999724999999999---9999-87899589999542-014058976502221461-9999998873899998852589 Q ss_pred C Q ss_conf 8 Q gi|255764461|r 92 D 92 (511) Q Consensus 92 D 92 (511) | T Consensus 83 ~ 83 (268) T cd00805 83 P 83 (268) T ss_pred C T ss_conf 9 No 91 >PRK12556 tryptophanyl-tRNA synthetase; Provisional Probab=96.56 E-value=0.038 Score=35.00 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=58.7 Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 98888179978889999883222478978999999998858980362364370227999999983999899999999999 Q gi|255764461|r 1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 1 m~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) |+ ||.+++.--|+ |.|||||-.+.+.- +++.+...+++++|. =.|-|-+- ...+|+++ .++.... T Consensus 1 m~--k~~i~SGiqPT--G~lHLGNYlGaik~--~v~l~~~~~~~~~~~-IaDlHalT-------~~~dp~~l-~~~~~~~ 65 (328) T PRK12556 1 MS--EKIMLTGIKPT--GYPHLGNYIGAIKP--ALQMSKNNEGKALYF-IADYHALN-------AVHDPEQF-SSYTKEV 65 (328) T ss_pred CC--CCEEEECCCCC--CCCCHHHHHHHHHH--HHHHHHCCCCCEEEE-EECHHHCC-------CCCCHHHH-HHHHHHH T ss_conf 99--99688577989--97508889999999--999754799877999-85142235-------88999999-9999999 Q ss_pred HHHHHHHCCCCC--CCCCCCCHHHHHHH Q ss_conf 999998088988--67477888899999 Q gi|255764461|r 81 RDMADVLDISYD--DFIRTTEKRHHDTC 106 (511) Q Consensus 81 ~~~~~~~~i~~D--~~~rT~~~~~~~~~ 106 (511) ..++-+.||+++ .|...+-|+|.+.. T Consensus 66 ~a~~LA~GlDP~~~~f~QS~Vpeh~eL~ 93 (328) T PRK12556 66 AATWLSLGLGEDVIFYRQTEVPEILELA 93 (328) T ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHH T ss_conf 9999975899874999878973999999 No 92 >TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=96.46 E-value=0.029 Score=35.89 Aligned_cols=93 Identities=12% Similarity=0.177 Sum_probs=62.5 Q ss_pred CEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHH--HCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 81799788899998-832224789789999999988--589803623643702279999999839998999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNA-QPHIGHAYEMIIADVLARFHR--LDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 5 ~~~~vt~~~Py~ng-~lHlGH~~~~i~~D~~~R~~r--~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) +++++|.-.|. | .+||||-.+.+. .++.- ..|++.++.-.++ | .|..+ .+++-.+.......++. T Consensus 2 ~~~~~tG~~PS--Gd~~HlGnylg~~~----~~~~~~~q~~~~~~~~~aD~-h--a~~~~---~~l~~~~~~~~~~~e~~ 69 (366) T TIGR00233 2 KFRVLTGIQPS--GDKMHLGNYLGAIR----LKVLQEEQEGYELFFCIADL-H--AITVK---QDLTDPDTLRKAREELV 69 (366) T ss_pred CCEEEECCCCC--CCCCCCCCHHHHHH----HHHHHHHHCCCCEEEEEECC-H--HHHCC---CCCCHHHHHHHHHHHHH T ss_conf 84788354576--87644330066788----88777431689768997372-5--65146---78881778999999999 Q ss_pred HHHHHHCCCCC---CCCCCCCH---HHHHHHHHH Q ss_conf 99998088988---67477888---899999999 Q gi|255764461|r 82 DMADVLDISYD---DFIRTTEK---RHHDTCRIL 109 (511) Q Consensus 82 ~~~~~~~i~~D---~~~rT~~~---~~~~~~~~~ 109 (511) .++=++||+++ .|..+.-+ +|.+.+.-+ T Consensus 70 ~~~lA~GlDP~K~~~f~QS~~~G~~~~~~l~~~l 103 (366) T TIGR00233 70 ADYLAVGLDPEKTTIFLQSEVPGGTEHYELAWLL 103 (366) T ss_pred HHHHHHCCCHHHEEEEEECCCCCCHHHHHHHHHH T ss_conf 9998726473146787505766514578999999 No 93 >PRK13354 tyrosyl-tRNA synthetase; Provisional Probab=96.34 E-value=0.0015 Score=45.31 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=43.8 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC--CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 1799788899998832224789789999999988589803623643--70227999999983999899999999999999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT--DEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM 83 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~--D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 83 (511) ++|+-.= |++ .+|||||+.+... + |.....||.|..+-|. -.=|-|.-...++.-.++++ +.++.+.++++ T Consensus 39 ~vy~GfD-PTa-~sLHlGhlv~l~~---L-~~fq~~Gh~~i~liGg~T~~IGDPSgk~~~R~~l~~e~-i~~N~~~~~~q 111 (405) T PRK13354 39 TLKLGLD-PTA-PDIHIGHLVVLRK---L-KQFQDAGHRAVILIGDFTGKIGDPTGKSKERKLLTDEQ-VQHNADTYTEQ 111 (405) T ss_pred EEEEEEC-CCC-CCCHHHHHHHHHH---H-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH T ss_conf 8999546-998-8520764999999---9-99998699479996786542569999854566767999-99999999999 Q ss_pred HHHH Q ss_conf 9980 Q gi|255764461|r 84 ADVL 87 (511) Q Consensus 84 ~~~~ 87 (511) +.++ T Consensus 112 ~~~~ 115 (405) T PRK13354 112 IFKL 115 (405) T ss_pred HHHH T ss_conf 9986 No 94 >PRK12283 tryptophanyl-tRNA synthetase; Reviewed Probab=96.27 E-value=0.07 Score=33.02 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=53.1 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980 Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511) Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511) ++|.-.|+ |.|||||-.+.+. -+++.+ .+++++|. =.|-|-+-+. ..+|+++ .++.-++..++=++ T Consensus 5 vlSGiqPT--G~lHLGNylGai~--~~v~lQ--~~~~~~~~-IaDlHAlT~~------~~~p~~l-~~~~~~~~a~~LA~ 70 (398) T PRK12283 5 VLSGMRPT--GRLHLGHYHGVLK--NWVKLQ--HEYPCFFF-VADWHALTTH------YETPEVI-EKNVWDMVIDWLAA 70 (398) T ss_pred CEECCCCC--CCCCHHHHHHHHH--HHHHHH--HCCCEEEE-EECHHHHCCC------CCCHHHH-HHHHHHHHHHHHHC T ss_conf 75271789--9861688999999--999986--03770899-9536552078------7899999-99999999999975 Q ss_pred CCCCC---CCCCCCCHHHHHHHH Q ss_conf 88988---674778888999999 Q gi|255764461|r 88 DISYD---DFIRTTEKRHHDTCR 107 (511) Q Consensus 88 ~i~~D---~~~rT~~~~~~~~~~ 107 (511) ||+++ .|....-|+|.+... T Consensus 71 GlDP~ks~if~QS~Vpeh~eL~w 93 (398) T PRK12283 71 GVDPAQATLFIQSKVPEHAELHL 93 (398) T ss_pred CCCCCCCEEEECCCCHHHHHHHH T ss_conf 88813075886788689999999 No 95 >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Probab=96.13 E-value=0.074 Score=32.81 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=54.5 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 81799788899998832224789789999999988589803623643702279999999839998999999999999999 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA 84 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 84 (511) ||+++|.--|+ |.+||||..+.+..- +..+ ..++++|. =.|-|-.-. ...+|+++ .++..+...++ T Consensus 2 k~~ilSGiqPT--G~~HLGnylGai~~~--v~lQ--~~~~~~~~-IaDlHalT~------~~~~~~~l-~~~~~~~aa~~ 67 (333) T PRK12282 2 KPIILTGDRPT--GKLHLGHYVGSLKNR--VALQ--NEHKQFVL-IADTQALTD------NAHNPEKI-RENILEVALDY 67 (333) T ss_pred CCEEEECCCCC--CCCHHHHHHHHHHHH--HHHH--CCCCCEEE-EECHHHHHC------CCCCHHHH-HHHHHHHHHHH T ss_conf 99788490878--835488789999999--9997--16880799-844788745------89999999-99999999999 Q ss_pred HHHCCCCC---CCCCCCCHHHHHHH Q ss_conf 98088988---67477888899999 Q gi|255764461|r 85 DVLDISYD---DFIRTTEKRHHDTC 106 (511) Q Consensus 85 ~~~~i~~D---~~~rT~~~~~~~~~ 106 (511) -++|++++ .|..+.-|+|.+.. T Consensus 68 lA~GlDP~k~~if~QS~v~eh~eL~ 92 (333) T PRK12282 68 LAVGIDPAKSTIFVQSQIPALAELT 92 (333) T ss_pred HHCCCCCCCEEEEECCCCHHHHHHH T ss_conf 9758985642899737866889999 No 96 >cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Probab=95.89 E-value=0.028 Score=35.92 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=41.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99883222478978999999998858980362364370227999999983999899999999999999998088988 Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD 92 (511) Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D 92 (511) |+|++||||+.+.+ ...++++. |++|.+.-|.+. .. ... -..+++ -+.++...+..++.++|+..+ T Consensus 9 PTg~lHlG~~v~~~---~~~~~q~~-g~~~~~~iaD~~-a~--~~d---~~~~~~-~i~~~~~~~~~~~~a~g~d~~ 74 (274) T cd00395 9 PTGSLHLGHYVGAI---KLKVLQQA-GHEVIILIADLH-AL--TGD---PSLDPE-EIRKNAREIAKQILALGLDPE 74 (274) T ss_pred CCCCCHHHHHHHHH---HHHHHHHC-CCCEEEEEECCC-CC--CCC---CCCCHH-HHHHHHHHHHHHHHHHCCCHH T ss_conf 88714689999999---99999988-998899990771-14--379---999999-999999999999999779947 No 97 >pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y). Probab=95.86 E-value=0.0046 Score=41.77 Aligned_cols=53 Identities=34% Similarity=0.421 Sum_probs=32.3 Q ss_pred CCHHCCCCCCCCHHCCHHHHHHHHHHH---------HCCCCCCCCCCEE-ECC-CCCCHHHCC-CCCCCCHHH Q ss_conf 100004564321000102477654331---------0123233343033-058-601000002-211100000 Q gi|255764461|r 258 ADLHVIGKDILRFHAIYWPAFLLSANL---------PLPKKVFSHGFIL-HKG-EKISKSLGN-VIDPIEVIE 318 (511) Q Consensus 258 ~d~~~~G~Dii~Fh~i~~pa~l~~~~~---------~~p~~i~~~g~l~-~~G-~KMSKS~GN-~I~~~e~l~ 318 (511) .++.+.|.|+ ||-+.++.++ +.|. .+++-++. .+| +|||||.|| .|+..|-.+ T Consensus 150 ~~i~~gG~DQ-------~~~~~l~rdl~~k~~~~~~~~p~-~l~~~ll~~~~G~~KMSKS~~nsaI~L~d~~~ 214 (291) T pfam00579 150 ADLQPGGSDQ-------WGHIELGRDLARRFNKKVFKKPV-GLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKE 214 (291) T ss_pred CCCCCCCCCH-------HHHHHHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCEEECCCCHH T ss_conf 6756656004-------89999999999995785678834-87416622667876636789997266679867 No 98 >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Probab=95.43 E-value=0.15 Score=30.48 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=21.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC Q ss_conf 999999999999999999999985432248999999984988 Q gi|255764461|r 439 TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA 480 (511) Q Consensus 439 ~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~ 480 (511) +|++....+|....+-.|.+| =.+.+++.+.+|+. T Consensus 296 ~d~~~l~~iL~~Ga~kAr~iA-------~~tl~~Vr~~~Gl~ 330 (333) T PRK12282 296 KDKGAVYDMLKEGSEKAREVA-------AQTLDEVKDAMGLN 330 (333) T ss_pred CCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCC T ss_conf 099999999999999999999-------99999999970886 No 99 >pfam01927 DUF82 Protein of unknown function DUF82. This prokaryotic protein family has no known function. The protein contains four conserved cysteines that may be involved in metal binding or disulphide bridges. Probab=95.25 E-value=0.047 Score=34.31 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=26.3 Q ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC Q ss_conf 999998858980362364370227999999983999 Q gi|255764461|r 33 VLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT 68 (511) Q Consensus 33 ~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~ 68 (511) -+|||+|+.|+|+.|..+.++ ..+...|.+++.. T Consensus 11 ~LAr~LR~lG~Dt~~~~~~~D--~~l~~~A~~E~Ri 44 (146) T pfam01927 11 KLARWLRLLGYDTLYDNDFED--DELLAIAAKEGRI 44 (146) T ss_pred HHHHHHHHCCCCEEECCCCCH--HHHHHHHHHCCCE T ss_conf 999999986988701599985--9999998664989 No 100 >PRK12284 tryptophanyl-tRNA synthetase; Reviewed Probab=95.14 E-value=0.22 Score=29.39 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=22.2 Q ss_pred HHCCCCCCCC-CC-E-EECCCCCCHHHCCCCCCCC Q ss_conf 1012323334-30-3-3058601000002211100 Q gi|255764461|r 284 LPLPKKVFSH-GF-I-LHKGEKISKSLGNVIDPIE 315 (511) Q Consensus 284 ~~~p~~i~~~-g~-l-~~~G~KMSKS~GN~I~~~e 315 (511) .+.|..++.. .- | -+||+|||||.||.|...+ T Consensus 181 F~~Pea~i~e~~a~lpGlDGrKMSKSy~NtI~Lf~ 215 (436) T PRK12284 181 FVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFS 215 (436) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 37884423688772249998705578898064878 No 101 >PRK00927 tryptophanyl-tRNA synthetase; Reviewed Probab=95.13 E-value=0.26 Score=28.76 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=46.9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC--- Q ss_conf 99883222478978999999998858980362364370227999999983999899999999999999998088988--- Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD--- 92 (511) Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D--- 92 (511) |+|.+||||..+.+. -+.+.+ .++++++. =.|-|.+. ...+|.++ .++...+..++-++|++++ T Consensus 9 PtG~~HlGny~g~i~--~~~~lq--~~~~~~~~-iaD~halt-------~~~~~~~l-~~~~~~~~~~~lA~GlDp~k~~ 75 (325) T PRK00927 9 PTGKLHLGNYLGAIK--NWVELQ--DDYECFFC-IADLHAIT-------VPQDPKEL-RENTRELAADYLACGIDPEKST 75 (325) T ss_pred CCCCCHHHHHHHHHH--HHHHHH--HCCCEEEE-EECHHHHC-------CCCCHHHH-HHHHHHHHHHHHHCCCCCCCCE T ss_conf 898254887999999--999986--02764999-85687864-------68889999-9999999999997297810087 Q ss_pred CCCCCCCHHHHHHH Q ss_conf 67477888899999 Q gi|255764461|r 93 DFIRTTEKRHHDTC 106 (511) Q Consensus 93 ~~~rT~~~~~~~~~ 106 (511) .|....-|+|.+.. T Consensus 76 ~f~QS~v~~~~eL~ 89 (325) T PRK00927 76 IFVQSHVPEHAELA 89 (325) T ss_pred EEECCCCHHHHHHH T ss_conf 98778970688999 No 102 >COG1656 Uncharacterized conserved protein [Function unknown] Probab=94.98 E-value=0.11 Score=31.59 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=47.7 Q ss_pred HHHHHHHHCCCCEEECC-CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99999885898036236-43702279999999839998999999999999999980889886747788889999999988 Q gi|255764461|r 33 VLARFHRLDGLDVLFTT-GTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWK 111 (511) Q Consensus 33 ~~~R~~r~~G~~v~~~~-g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~ 111 (511) -+||++|+.||++.|.+ .+|+ .|..-|.++|.- +..+-.+-+++. ++|+. -.|+++++++ +...++.. T Consensus 17 ~LARwLRllGydt~~~~~~~d~---~i~~i~~~e~rI---llTRDr~L~~r~--k~g~~-~i~i~~~s~~--~Ql~e~~~ 85 (165) T COG1656 17 KLARWLRLLGYDTVYSSNESDD---EIILIAKKEGRI---LLTRDRELYKRA--KLGIK-AILIRSDSIE--EQLAEFLA 85 (165) T ss_pred HHHHHHHHCCCCEEEECCCCCH---HHHHHHHCCCEE---EEECCHHHHHHH--HCCCC-EEEEECCCHH--HHHHHHHH T ss_conf 9999999808842542367838---899987447808---996229999986--42673-2897179879--99999999 Q ss_pred HHHHHHCCCCCCHHHHCCCCCCC Q ss_conf 87543102211000101133430 Q gi|255764461|r 112 KISDKGDIYKGCYSGWYSLRDEA 134 (511) Q Consensus 112 ~l~~~G~iy~~~~~~~y~~~~~~ 134 (511) ++-.++-. ..+.--||.|.. T Consensus 86 ~~~l~~~~---~~e~~RCp~CN~ 105 (165) T COG1656 86 RLGLKPRL---FPEFSRCPECNG 105 (165) T ss_pred HHCCCHHC---CCCCCCCCCCCC T ss_conf 83522001---601032743497 No 103 >cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Probab=94.72 E-value=0.017 Score=37.59 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=35.8 Q ss_pred CCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEE-ECC-CCCCHHHCCCCC-CCCHHHHCCCCCCCHHHEEEC Q ss_conf 1000045643210001024776543-310123233343033-058-601000002211-100000022111211100002 Q gi|255764461|r 258 ADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFIL-HKG-EKISKSLGNVID-PIEVIEEVGVDALRYFLVREI 333 (511) Q Consensus 258 ~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~-~~G-~KMSKS~GN~I~-~~e~l~~~g~D~lR~~l~~~~ 333 (511) .++.+.|.|+..++.+-= -+.... +++.|..+. +-++. .+| +|||||.||.+. ..| +++.++=.+.+.. T Consensus 142 ~~~v~~G~DQ~~~~~l~R-dia~k~~~~~~p~~l~-~~~l~~l~G~~KMSKS~~ns~i~l~D-----sp~~i~~KI~~a~ 214 (274) T cd00395 142 ADLVPGGSDQDPHIELGR-DLARRFNGFKKPVALT-SPLLTGLDGGKKMSKSDGNAIIFLLD-----SPEEIYKKIMKAY 214 (274) T ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCEEECCC-----CHHHHHHHHEECC T ss_conf 654555611799999999-9999944999986872-37744689976745789984465469-----9999999872240 No 104 >cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Probab=94.44 E-value=0.12 Score=31.30 Aligned_cols=47 Identities=26% Similarity=0.213 Sum_probs=28.7 Q ss_pred CCHHCCCCCCCCHHCCHHHHHHHHH------HHHCCCCCCCCCCEE-ECCCCCCHHHCCCCC Q ss_conf 1000045643210001024776543------310123233343033-058601000002211 Q gi|255764461|r 258 ADLHVIGKDILRFHAIYWPAFLLSA------NLPLPKKVFSHGFIL-HKGEKISKSLGNVID 312 (511) Q Consensus 258 ~d~~~~G~Dii~Fh~i~~pa~l~~~------~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~ 312 (511) .++.+.|.|+..++ .++. +.+.| .++++.++. .+|+|||||.||.|+ T Consensus 151 ~~~vpvG~DQ~~hi-------el~Rdia~r~n~~~~-~~l~~pll~g~dG~KMSKS~~N~i~ 204 (268) T cd00805 151 VDIQLGGSDQRGNI-------TLGRDLIRRLGYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW 204 (268) T ss_pred CCCEECCHHHHHHH-------HHHHHHHHHHCCCCC-EEEEECEEECCCCCCCCCCCCCCCC T ss_conf 77146060089999-------999999998289761-4553110008998744678999501 No 105 >PRK12283 tryptophanyl-tRNA synthetase; Reviewed Probab=94.40 E-value=0.41 Score=27.36 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=19.9 Q ss_pred EECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHE Q ss_conf 3058601000002211100000022111211100 Q gi|255764461|r 297 LHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLV 330 (511) Q Consensus 297 ~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~ 330 (511) -.||+|||||.||.|...|- +|.+|--+. T Consensus 259 glDGkKMSKS~~n~I~L~D~-----~~~I~KKI~ 287 (398) T PRK12283 259 GLDGQKMSKSYGNTIGLRED-----PETVTKKIR 287 (398) T ss_pred CCCCCCCCCCCCCEEECCCC-----HHHHHHHHH T ss_conf 99986457999997555289-----999999997 No 106 >pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y). Probab=94.12 E-value=0.092 Score=32.12 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=26.9 Q ss_pred CEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 81799788-8999988322247897899999999885898036236437 Q gi|255764461|r 5 EKLYISTA-IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 5 ~~~~vt~~-~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) +++.|-+. -| +|+|||||+++. -.+.++++ .|++|.++-|.. T Consensus 4 k~~~vy~G~~P--Tg~lHlGhl~~~---~~~~~lq~-~g~~~~~liad~ 46 (291) T pfam00579 4 RPLRVYTGFDP--TGPLHLGYLVPL---MKLVQFQQ-AGHEVFFLIGDL 46 (291) T ss_pred CCCEEEEEECC--CCHHHHHHHHHH---HHHHHHHH-CCCCEEEEECCC T ss_conf 98189973488--963077989999---99999997-899099997383 No 107 >cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding Probab=94.09 E-value=0.021 Score=36.90 Aligned_cols=57 Identities=32% Similarity=0.303 Sum_probs=28.5 Q ss_pred CCHHCCCCCCCCHHCCHHHHHHHHHH------HHCCCCCCCCC-CEE--ECC-CCCCHHHCC-CCCCCC Q ss_conf 10000456432100010247765433------10123233343-033--058-601000002-211100 Q gi|255764461|r 258 ADLHVIGKDILRFHAIYWPAFLLSAN------LPLPKKVFSHG-FIL--HKG-EKISKSLGN-VIDPIE 315 (511) Q Consensus 258 ~d~~~~G~Dii~Fh~i~~pa~l~~~~------~~~p~~i~~~g-~l~--~~G-~KMSKS~GN-~I~~~e 315 (511) .|+-+.|.|+. +|-.+=--+..-.| ++.|..++..+ ++. .+| +|||||.+| .|...| T Consensus 139 ~d~vp~G~DQ~-~h~~laRdia~k~n~~~~~~~~~P~~~~~~~~~i~~l~~g~~KMSKS~~ns~I~l~D 206 (282) T cd00806 139 ADLVPVGEDQD-PHLELTRDIARRFNKLYGEIFPKPEALISKGARIPSLTGPSKKMSKSDPNTIIFLLD 206 (282) T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC T ss_conf 65052220479-999999999999865506534664110155551667889767555689997445417 No 108 >PRK00927 tryptophanyl-tRNA synthetase; Reviewed Probab=93.95 E-value=0.42 Score=27.28 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=20.2 Q ss_pred HHCCCCCCC-CC-CE---EECCCCCCHHHCC---CCCCCCH Q ss_conf 101232333-43-03---3058601000002---2111000 Q gi|255764461|r 284 LPLPKKVFS-HG-FI---LHKGEKISKSLGN---VIDPIEV 316 (511) Q Consensus 284 ~~~p~~i~~-~g-~l---~~~G~KMSKS~GN---~I~~~e~ 316 (511) .+.|+.++. ++ .+ ..+|+|||||.+| .|...|- T Consensus 169 f~~P~~~~~~~~~~i~~L~~~~~KMSKS~~n~~s~I~l~d~ 209 (325) T PRK00927 169 FPVPEPLIPKVGARVMSLQDPTKKMSKSDGNDNSTINLLDD 209 (325) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC T ss_conf 26775500777660678989551014467997655651389 No 109 >PRK05912 tyrosyl-tRNA synthetase; Validated Probab=93.82 E-value=0.03 Score=35.69 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=44.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 17997888999988322247897899999999885898036236437--0227999999983999899999999999999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD--EHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM 83 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D--~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 83 (511) ++|+-.- |++ .+||+||+.+... -|.....||.+..+-|.= -=|-|.=..+++.-.+. |-++++.+.++++ T Consensus 34 ~~y~G~D-PTa-~sLH~Ghlv~l~~----L~~fq~~Gh~~i~lvGg~T~~IGDPSGk~~~R~~l~~-e~i~~N~~~i~~q 106 (402) T PRK05912 34 RIKLGFD-PTA-PDLHLGHLVVLLK----LRRFQDLGHKPIFLIGDFTGMIGDPSGKSATRKLLTR-EQVLENAETYKEQ 106 (402) T ss_pred EEEEEEC-CCC-CCCCHHHHHHHHH----HHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCCCH-HHHHHHHHHHHHH T ss_conf 7998146-998-7520652999999----9999986996499967752450189998655668899-9999999999999 Q ss_pred HHHH Q ss_conf 9980 Q gi|255764461|r 84 ADVL 87 (511) Q Consensus 84 ~~~~ 87 (511) +.++ T Consensus 107 ~~~~ 110 (402) T PRK05912 107 LFKI 110 (402) T ss_pred HHHH T ss_conf 9987 No 110 >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=93.75 E-value=0.031 Score=35.61 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=39.7 Q ss_pred CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 881799788899998-8322247897899999999885898036236437--0227999999983999899999999999 Q gi|255764461|r 4 REKLYISTAIAYPNA-QPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD--EHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511) Q Consensus 4 ~~~~~vt~~~Py~ng-~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D--~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511) +.++|+-.- |+| +|||||+.+. -.++|+ ...|++|..+-|.= -=|-|. -+.++...-.+|.+.++.+.+ T Consensus 32 ~~~~Y~GfD---PTa~slHlGhlv~l---~kL~~f-Q~aGh~~ivLigd~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i 103 (401) T COG0162 32 PLRVYIGFD---PTAPSLHLGHLVPL---MKLRRF-QDAGHKPIVLIGDATAMIGDPS-GKSEERKLLTRETVLENAETI 103 (401) T ss_pred CCEEEEEEC---CCCCCCCHHHHHHH---HHHHHH-HHCCCEEEEEECCCCEECCCCC-CCHHHHHHCCHHHHHHHHHHH T ss_conf 944999537---89875336668999---999999-9879918999644402427988-888887530499999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|255764461|r 81 RDMAD 85 (511) Q Consensus 81 ~~~~~ 85 (511) ++++. T Consensus 104 ~~ql~ 108 (401) T COG0162 104 KKQLG 108 (401) T ss_pred HHHHC T ss_conf 99962 No 111 >PRK12556 tryptophanyl-tRNA synthetase; Provisional Probab=93.65 E-value=0.022 Score=36.79 Aligned_cols=33 Identities=42% Similarity=0.551 Sum_probs=21.8 Q ss_pred HHCCCCCCC-CCCE--EECCCCCCHHHCCCCCCCCH Q ss_conf 101232333-4303--30586010000022111000 Q gi|255764461|r 284 LPLPKKVFS-HGFI--LHKGEKISKSLGNVIDPIEV 316 (511) Q Consensus 284 ~~~p~~i~~-~g~l--~~~G~KMSKS~GN~I~~~e~ 316 (511) .+.|+.++. .+-+ ..+|+|||||.||.|...|- T Consensus 180 f~~P~~~i~~~~~~i~gldgkKMSKS~~n~I~L~D~ 215 (328) T PRK12556 180 FTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFAE 215 (328) T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC T ss_conf 678643337654331089987655687881347689 No 112 >PRK13354 tyrosyl-tRNA synthetase; Provisional Probab=92.50 E-value=0.36 Score=27.74 Aligned_cols=52 Identities=35% Similarity=0.427 Sum_probs=33.9 Q ss_pred CCCHHCCCCCCCCHHCCHHHHHHHHHHH-----HCCCCCCCCCCEE-ECC-CCCCHHHCCCCCCCC Q ss_conf 1100004564321000102477654331-----0123233343033-058-601000002211100 Q gi|255764461|r 257 PADLHVIGKDILRFHAIYWPAFLLSANL-----PLPKKVFSHGFIL-HKG-EKISKSLGNVIDPIE 315 (511) Q Consensus 257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~-----~~p~~i~~~g~l~-~~G-~KMSKS~GN~I~~~e 315 (511) .+++++.|-|. || -++.+.++ .-|...++.-.++ .+| +|||||.||+||..+ T Consensus 185 ~~~iqiGGsDQ-~g------Ni~~G~dL~r~~~~~~~~~lT~PLL~~~dG~~KmgKS~gnaIwLd~ 243 (405) T PRK13354 185 DADIELGGTDQ-WF------NILMGRDLQRKLGEEKQVGITMPLLEGLDGTEKMSKSLGNYIGLDE 243 (405) T ss_pred CCCEEEECHHH-HH------HHHHHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCEECCC T ss_conf 88379950868-88------9997999999857898359960615788775532501278631479 No 113 >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=92.47 E-value=0.047 Score=34.27 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=22.6 Q ss_pred HHCCCCCCCC-CCEE-ECC-CCCCHHHCC-CCCCCCHHH Q ss_conf 1012323334-3033-058-601000002-211100000 Q gi|255764461|r 284 LPLPKKVFSH-GFIL-HKG-EKISKSLGN-VIDPIEVIE 318 (511) Q Consensus 284 ~~~p~~i~~~-g~l~-~~G-~KMSKS~GN-~I~~~e~l~ 318 (511) ++.|..++.- .++. ++| .|||||.+| +|...|--+ T Consensus 177 f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~~~ 215 (314) T COG0180 177 FPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDDPK 215 (314) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHH T ss_conf 378600144777464789998666669998245049989 No 114 >PRK05912 tyrosyl-tRNA synthetase; Validated Probab=92.24 E-value=0.4 Score=27.43 Aligned_cols=52 Identities=37% Similarity=0.418 Sum_probs=32.4 Q ss_pred CCCHHCCCCCCCCHHCCHHHHHHHHHHH-----HCCCCCCCCCCEE-ECCCC-CCHHHCCCCCCCC Q ss_conf 1100004564321000102477654331-----0123233343033-05860-1000002211100 Q gi|255764461|r 257 PADLHVIGKDILRFHAIYWPAFLLSANL-----PLPKKVFSHGFIL-HKGEK-ISKSLGNVIDPIE 315 (511) Q Consensus 257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~-----~~p~~i~~~g~l~-~~G~K-MSKS~GN~I~~~e 315 (511) .+++++.|-|. || -++.+.++ .-|-..++.-.++ .+|+| ||||.||+||.++ T Consensus 181 ~~~lqiGGsDQ-wg------Ni~~G~dLir~~~~~~~~glT~PLLt~~dG~K~gsKS~gnaIwLd~ 239 (402) T PRK05912 181 NADLELGGTDQ-WF------NILVGRDLQRRYGQEPQFGLTMPLLTGLDGVKKMSKSLGNYIWLDE 239 (402) T ss_pred CCCEEEECHHH-HH------HHHHHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCEECCC T ss_conf 03347730548-99------9998999999856898379984505778768435667998701789 No 115 >PRK08560 tyrosyl-tRNA synthetase; Validated Probab=91.86 E-value=0.075 Score=32.81 Aligned_cols=60 Identities=25% Similarity=0.246 Sum_probs=31.3 Q ss_pred CCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECC-------CCCCHH-HCCCCCCCCHHH Q ss_conf 11000045643210001024776543310123233343033-058-------601000-002211100000 Q gi|255764461|r 257 PADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKG-------EKISKS-LGNVIDPIEVIE 318 (511) Q Consensus 257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G-------~KMSKS-~GN~I~~~e~l~ 318 (511) .+|+-+.|.|+..+|-+- --+....|++.|-.+. +-++. ++| +||||| .+|.|...|--+ T Consensus 169 ~adi~~~G~DQ~~~~~L~-Rdia~rf~~~~p~~l~-~p~l~gl~g~~~~~~~~KMSkS~~~~~I~l~D~~~ 237 (333) T PRK08560 169 DVDIAVGGMDQRKAHMLA-REVLPKLGYKKPVAIH-TPLLTGLDGGGEVLAEIKMSKSKPGSAIFVHDSPE 237 (333) T ss_pred CCCCCCCCCCHHHHHHHH-HHHHHHCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHH T ss_conf 799553154308999999-9999983999975752-57545687877779988678899999474158999 No 116 >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=90.80 E-value=0.71 Score=25.58 Aligned_cols=52 Identities=27% Similarity=0.373 Sum_probs=29.5 Q ss_pred CCCHHCCCCCCCCHHCCHHHHHHHHHHH----HCCCCC-CCCCCEE-ECCCCCCHHHCCCCCCCC Q ss_conf 1100004564321000102477654331----012323-3343033-058601000002211100 Q gi|255764461|r 257 PADLHVIGKDILRFHAIYWPAFLLSANL----PLPKKV-FSHGFIL-HKGEKISKSLGNVIDPIE 315 (511) Q Consensus 257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~----~~p~~i-~~~g~l~-~~G~KMSKS~GN~I~~~e 315 (511) ..|+++.|-|. |-.+++|.++ .-.+.+ +++-.|+ .+|.|||||.||.+|... T Consensus 180 ~~dlq~GG~DQ-------~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~a~~~~s 237 (401) T COG0162 180 NKDLQLGGSDQ-------WGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDS 237 (401) T ss_pred CCCHHCCCHHH-------HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCC T ss_conf 45231187678-------99999999999980899728998355038988815666778677037 No 117 >pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids. Probab=90.67 E-value=1.3 Score=23.57 Aligned_cols=57 Identities=12% Similarity=0.266 Sum_probs=47.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH Q ss_conf 895565667899999999998775035899999999999999788654187012169999 Q gi|255764461|r 383 FTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPD 442 (511) Q Consensus 383 ~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~ 442 (511) .++.++.++..+....+.+..+.++++.+..+..+++++...|.|.+..+ ..+++.+ T Consensus 30 ~~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~---Il~~~~~ 86 (117) T pfam05746 30 LEEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFHSFYNNCR---VLDEDDE 86 (117) T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHH T ss_conf 99999999998805299999999866869999999999999999997196---7489889 No 118 >cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Probab=88.33 E-value=0.16 Score=30.37 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=43.2 Q ss_pred HHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCC-CCC------CC--------HH-HHCCCCCCCHHHEEECCCCCCCEE Q ss_conf 765433101232333430330586010000022-111------00--------00-002211121110000247873011 Q gi|255764461|r 278 FLLSANLPLPKKVFSHGFILHKGEKISKSLGNV-IDP------IE--------VI-EEVGVDALRYFLVREIACGKDGFY 341 (511) Q Consensus 278 ~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~-I~~------~e--------~l-~~~g~D~lR~~l~~~~~~~~D~~F 341 (511) ++.++|.+.|.... .+.|..+|.||||+++-- |.. +| +- ..|-|++++=|++..+....|..+ T Consensus 141 l~~aLg~~~P~~~h-~~~l~~~~~klSKR~~~~~i~~g~v~gwdDprl~Tl~~~rr~G~~peAi~n~l~~lG~s~~d~~~ 219 (238) T cd00807 141 LYEYLGWRKPEQIE-FGRLNLEYTVLSKRKLKKLVEEGEVEGWDDPRLPTLRGLRRRGITPEAIREFILEVGVSKADVTI 219 (238) T ss_pred HHHHCCCCCCCEEE-EEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEE T ss_conf 99984999986788-75487999705461515402458636776754065999998799899999999997899788676 Q ss_pred CCCCCC Q ss_conf 122211 Q gi|255764461|r 342 DKDGLK 347 (511) Q Consensus 342 s~~~~~ 347 (511) +++.+. T Consensus 220 ~~~~le 225 (238) T cd00807 220 SWAKLE 225 (238) T ss_pred CHHHHH T ss_conf 399999 No 119 >pfam09190 DALR_2 DALR domain. This DALR domain is found in cysteinyl-tRNA-synthetases. Probab=86.87 E-value=1.3 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.8 Q ss_pred HHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99877-5035899999999999999788654 Q gi|255764461|r 401 IRENM-QNQLIHRALAQVISLVSEVDRYFDA 430 (511) Q Consensus 401 v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511) +.++| |.++.+.|+..++++++.+|++++. T Consensus 2 F~~AMdDDfNTp~Ala~lfel~k~iN~~~~~ 32 (62) T pfam09190 2 FIEAMDDDFNTPEAIAVLFELAKEINRALNE 32 (62) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 5777651447599999999999999987054 No 120 >cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Probab=86.66 E-value=0.18 Score=30.07 Aligned_cols=69 Identities=22% Similarity=0.197 Sum_probs=41.5 Q ss_pred HHHHHHHHCCCCCCCCCCE-EECCCCCCHHHCCCCCCCCHHHH-CCCCCCCHHHEEECCC-CC-CCEECCCCCCC Q ss_conf 7654331012323334303-30586010000022111000000-2211121110000247-87-30111222111 Q gi|255764461|r 278 FLLSANLPLPKKVFSHGFI-LHKGEKISKSLGNVIDPIEVIEE-VGVDALRYFLVREIAC-GK-DGFYDKDGLKK 348 (511) Q Consensus 278 ~l~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~I~~~e~l~~-~g~D~lR~~l~~~~~~-~~-D~~Fs~~~~~~ 348 (511) +..++|.+.|... .+..+ ..+|+||||..|. +...++-++ |.|++++=||+..+.. .. ...|+.++++. T Consensus 138 l~~~Lg~~~P~f~-Hlpli~~~~g~kLSKR~~~-~si~~~r~~G~~Peai~n~l~~lG~s~~~~~e~~~~~eli~ 210 (239) T cd00808 138 LYEALGWEPPKFA-HLPLILNPDGKKLSKRHGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIE 210 (239) T ss_pred HHHHCCCCCCEEE-CCCCEECCCCCCCCCCCCH-HCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH T ss_conf 9996489998032-6624268998977670872-16999998699879999999997599987644389999997 No 121 >smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. Probab=85.64 E-value=2.7 Score=21.32 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=43.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9556566789999999999877503589999999999999978865418 Q gi|255764461|r 384 TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQK 432 (511) Q Consensus 384 ~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~ 432 (511) ++.++.++..+....+.+..+.++++.+..+..+++++...|.|.+..+ T Consensus 35 ~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~ 83 (122) T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCR 83 (122) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999997789999999976958999999999999999984384 No 122 >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. Probab=84.44 E-value=2.3 Score=21.78 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=36.6 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 17997888999988322247897899999999885898036236437 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ||++.|+..+|..|+++|=+-.++ --++|.+.-+|++|..+|..| T Consensus 2 kI~~v~~~~~p~pP~~~GG~e~~~--~~La~~L~~~Gh~V~v~~~~~ 46 (335) T cd03802 2 RIALVAPPREPVPPPAYGGTERVV--AALTEGLVARGHEVTLFASGD 46 (335) T ss_pred EEEEECCCCCCCCCCCCCCHHHHH--HHHHHHHHHCCCEEEEEECCC T ss_conf 869988840036999989799999--999999997699899996289 No 123 >COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Probab=84.02 E-value=3.1 Score=20.82 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=55.9 Q ss_pred CHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHC Q ss_conf 213455653123---32103455589556566789999999999877503589999999999999978865418701216 Q gi|255764461|r 362 VSRSVSMILKDY---DGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKK 438 (511) Q Consensus 362 ~~R~~~f~~k~~---~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k 438 (511) .+|+...+.+.- .+.+...--.++.++.+.+.+..+...+.+++..-+|..|+..+.++..-++.|++..- ... T Consensus 584 ~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~Vm---Vm~ 660 (691) T COG0751 584 NKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVM---VMA 660 (691) T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEC T ss_conf 98999998734555677669678528899999999999777788887423599999999985426999856726---647 Q ss_pred CCHHHHHHHHH Q ss_conf 99999999999 Q gi|255764461|r 439 TNPDRASTVLY 449 (511) Q Consensus 439 ~d~~~~~~vl~ 449 (511) +|..-.++-|. T Consensus 661 eD~~iR~NRLa 671 (691) T COG0751 661 EDEALRNNRLA 671 (691) T ss_pred CCHHHHHHHHH T ss_conf 87899999999 No 124 >PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Probab=83.78 E-value=3.2 Score=20.75 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=48.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHH Q ss_conf 9556566789999999999877503589999999999999978865418701216999999999999 Q gi|255764461|r 384 TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYV 450 (511) Q Consensus 384 ~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~ 450 (511) .+.++.+.+.+..+.+++..+++.-+|..++..+.++...+|.|++... ...+|.+-..+-|.+ T Consensus 605 ~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~L~~L~~~Id~FFD~Vm---Vm~~d~~iR~NRL~L 668 (687) T PRK01233 605 EDAEKALYEALQALRPAVQPAFAAGDYQAALEALAALRPPVDAFFDNVM---VMAEDEALRANRLAL 668 (687) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE---ECCCCHHHHHHHHHH T ss_conf 9999999999999999999887543599999999974048999848897---738988999999999 No 125 >cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Probab=83.10 E-value=2.8 Score=21.13 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=45.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99883222478978999999998858980362364370227999999983999899999999999999998088988674 Q gi|255764461|r 16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFI 95 (511) Q Consensus 16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~ 95 (511) +-|+.| -+...++++.++..|++|.|.- .+++|+++++.-.+. .-+.+++|. T Consensus 7 v~gD~H------~iG~~iv~~~l~~~G~~V~~lG---------------~~vp~e~~v~~a~~~---~~d~I~lS~---- 58 (119) T cd02067 7 VGGDGH------DIGKNIVARALRDAGFEVIDLG---------------VDVPPEEIVEAAKEE---DADAIGLSG---- 58 (119) T ss_pred CCCCHH------HHHHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHHC---CCCEEEEEC---- T ss_conf 398567------7899999999997899899899---------------999999999999970---999999962---- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 77888899999999888754310 Q gi|255764461|r 96 RTTEKRHHDTCRILWKKISDKGD 118 (511) Q Consensus 96 rT~~~~~~~~~~~~~~~l~~~G~ 118 (511) +...|...++++.+.|.++|. T Consensus 59 --~~~~~~~~~~~~i~~l~~~g~ 79 (119) T cd02067 59 --LLTTHMTLMKEVIEELKEAGL 79 (119) T ss_pred --CCCCCHHHHHHHHHHHHHCCC T ss_conf --202426899999999997699 No 126 >PRK12285 tryptophanyl-tRNA synthetase; Reviewed Probab=81.77 E-value=0.56 Score=26.31 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=35.0 Q ss_pred CCCCCCCCHHCC---HHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCC-CCCCCCHHHHCCCCCCCHHH Q ss_conf 045643210001---024776543310123233343033-058601000002-21110000002211121110 Q gi|255764461|r 262 VIGKDILRFHAI---YWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGN-VIDPIEVIEEVGVDALRYFL 329 (511) Q Consensus 262 ~~G~Dii~Fh~i---~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN-~I~~~e~l~~~g~D~lR~~l 329 (511) ..|.|.-++.-+ +=|-|...+|+..|-.+. |-|+. +.|.|||.|.+| +|...|--+..- .-+++++ T Consensus 210 P~giDQDP~fRltRDiA~r~~~~lg~~kPa~ih-~~flpgL~G~KMSsS~p~saI~ltDtp~~ik-kKIk~Af 280 (369) T PRK12285 210 PVGIDQDPHIRLTRDIAERMRISLGFIKPASTY-HKFMTGLTGGKMSSSKPESAIYLTDDPETAK-KKIKNAL 280 (369) T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH-CCCCCCCCCCCCCCCCCCCEEEECCCHHHHH-HHHHHHH T ss_conf 403454468899998888740114888727775-1145677889876899985368508999999-9999854 No 127 >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases. Probab=81.40 E-value=3.9 Score=20.13 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8 Q ss_pred HHHHHH-HCCHHHHHHHHHHHHHHHHHHH Q ss_conf 998775-0358999999999999997886 Q gi|255764461|r 401 IRENMQ-NQLIHRALAQVISLVSEVDRYF 428 (511) Q Consensus 401 v~~a~e-~~~~~~Al~~i~~l~~~~N~yi 428 (511) +.++|+ .++.+.|+..++++++.+|+.. T Consensus 2 F~~AMdDDfNTp~Ala~lfel~k~~N~~~ 30 (56) T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLL 30 (56) T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 47775442475999999999999999864 No 128 >PRK09620 hypothetical protein; Provisional Probab=80.12 E-value=3.3 Score=20.68 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=37.1 Q ss_pred CCEEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 88179978889999-88-32224789789999999988589803623643 Q gi|255764461|r 4 REKLYISTAIAYPN-AQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGT 51 (511) Q Consensus 4 ~~~~~vt~~~Py~n-g~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~ 51 (511) -||++||+.+-+-. .| -.|++..+=-++=.+||....+|.+|.+++|. T Consensus 3 GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli~g~ 52 (229) T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229) T ss_pred CCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 98999958887566688456277682399999999999779979999458 No 129 >PRK05818 DNA polymerase III subunit delta'; Validated Probab=79.05 E-value=2.3 Score=21.86 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=62.6 Q ss_pred EEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 33058601000002211100000022111211100002478730111222111001332110221021345565312332 Q gi|255764461|r 296 ILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDG 375 (511) Q Consensus 296 l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g 375 (511) +..+-++|+.+--|+.- -.+|+=+.+++ +.|.+..+ +.+...+ .|||........+. T Consensus 94 II~~Ae~Mt~~AANALL--KtLEEPp~nt~-fIL~t~~~---------~~LLPTI-----------rSRC~~~~~~~~~~ 150 (262) T PRK05818 94 IIYGIEKLNKQSANSLL--KLIEEPPKNTY-GIFTTRNE---------NNILNTI-----------LSRCVQYVVLSKEK 150 (262) T ss_pred EECCHHHHCHHHHHHHH--HHHCCCCCCEE-EEEEECCH---------HHCCCHH-----------HHHCCCCCCCCHHH T ss_conf 98777874999999999--86128987838-99973881---------4373088-----------87701446664346 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC Q ss_conf 1034555895565667899999999998775035899999999999999788654187012169 Q gi|255764461|r 376 MIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKT 439 (511) Q Consensus 376 ~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~ 439 (511) +++.....+......+..-...+.++.+++++-.+++++..+..++...|+.++..+-|++-++ T Consensus 151 ~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~n~~~~~~~~~~l~~~ 214 (262) T PRK05818 151 KVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKT 214 (262) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHC T ss_conf 6788887408889876410110799998861676888999999998756884339999999831 No 130 >cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. Probab=79.04 E-value=4.6 Score=19.59 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=27.6 Q ss_pred HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999877-503589999999999999978865 Q gi|255764461|r 396 RVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFD 429 (511) Q Consensus 396 ~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~ 429 (511) ...+++.++| +.++++.|+..++++++.+|+..+ T Consensus 33 ~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~~~ 67 (156) T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC T ss_conf 89999999987634879999999999999998604 No 131 >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. Probab=76.29 E-value=5.4 Score=19.05 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=39.0 Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999998858980362364370227999999983999899999999999999998088988674778888999999998 Q gi|255764461|r 31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILW 110 (511) Q Consensus 31 ~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~ 110 (511) +-+++|.++..|++|.|.- ...||+|+++.-.+ +.-+..++|- ..-.|...++++. T Consensus 16 ~~iva~~l~d~GfeVi~lG---------------~~~s~eeiv~~A~~---e~ad~IglSs------L~g~h~~~~~~l~ 71 (122) T cd02071 16 AKVIARALRDAGFEVIYTG---------------LRQTPEEIVEAAIQ---EDVDVIGLSS------LSGGHMTLFPEVI 71 (122) T ss_pred HHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHH---CCCCEEEEEC------CCCCHHHHHHHHH T ss_conf 9999999997897699679---------------98899999999997---3998999964------6554478999999 Q ss_pred HHHHHHHC Q ss_conf 88754310 Q gi|255764461|r 111 KKISDKGD 118 (511) Q Consensus 111 ~~l~~~G~ 118 (511) ..|.++|. T Consensus 72 ~~L~e~G~ 79 (122) T cd02071 72 ELLRELGA 79 (122) T ss_pred HHHHHCCC T ss_conf 99997699 No 132 >KOG2144 consensus Probab=75.81 E-value=1.1 Score=24.06 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=33.5 Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-E-CCCCCCHHHCCC-CCC Q ss_conf 4310002411000045643210001024776543310123233343033-0-586010000022-111 Q gi|255764461|r 249 DGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-H-KGEKISKSLGNV-IDP 313 (511) Q Consensus 249 ~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~-~G~KMSKS~GN~-I~~ 313 (511) ...++.|...|++|.|-|.-.-.++ =--.|-.+|++ -+-++.|.||- + .|+|||+|--+. |+. T Consensus 169 QalDe~~L~vD~qfgGvDQRKIf~~-A~eylp~l~yk-KrihLmnpMvPGL~q~~KMSsSd~~SkIdl 234 (360) T KOG2144 169 QALDEFYLEVDAQFGGVDQRKIFVL-AEEYLPDLGYK-KRIHLMNPMVPGLAQGEKMSSSDPLSKIDL 234 (360) T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 7766998730377548119999999-99861541766-552323777855344576666785232311 No 133 >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding. Probab=75.50 E-value=5.7 Score=18.91 Aligned_cols=15 Identities=0% Similarity=-0.035 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999980 Q gi|255764461|r 73 VDQNSRNFRDMADVL 87 (511) Q Consensus 73 ~~~~~~~~~~~~~~~ 87 (511) +-++|+++++.+.+| T Consensus 76 Tl~lH~eLE~~LA~F 90 (392) T TIGR01825 76 TLELHEELEEKLAKF 90 (392) T ss_pred HHHHHHHHHHHHHHH T ss_conf 778999999998755 No 134 >KOG2145 consensus Probab=73.22 E-value=2.9 Score=21.10 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=25.8 Q ss_pred HHHCCCCCCCCCCEEEC--CCCCCHHHCCC-CCCCCHHHHCCCCCCCHHH Q ss_conf 31012323334303305--86010000022-1110000002211121110 Q gi|255764461|r 283 NLPLPKKVFSHGFILHK--GEKISKSLGNV-IDPIEVIEEVGVDALRYFL 329 (511) Q Consensus 283 ~~~~p~~i~~~g~l~~~--G~KMSKS~GN~-I~~~e~l~~~g~D~lR~~l 329 (511) |++-|--+...-|=.+. ..|||-|--|. |...|..++.---+.||.+ T Consensus 257 g~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~af 306 (397) T KOG2145 257 GYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAF 306 (397) T ss_pred CCCCCCEEEHHHCHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHC T ss_conf 89984210011021210754455567997437862758999999988631 No 135 >pfam06940 DUF1287 Domain of unknown function (DUF1287). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. This family is related to pfam00877. Probab=72.95 E-value=2.7 Score=21.31 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=19.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 89999883222478978999999998858980 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLD 44 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~ 44 (511) ++||||+.-.+.-.+. ||+.|..|..|++ T Consensus 22 ~~YP~GDvp~~~GVCT---DVViRA~R~~g~D 50 (164) T pfam06940 22 LGYPGGDVPLNTGVCT---DVVIRAYRDQGYD 50 (164) T ss_pred CCCCCCCCCCCCCCCH---HHHHHHHHHCCCC T ss_conf 4899998887767428---8999999984976 No 136 >cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases. Probab=72.91 E-value=6.5 Score=18.47 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=23.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC Q ss_conf 799999998399989999999-9999999998088 Q gi|255764461|r 56 QKIAKAAQNAGVTTKVFVDQN-SRNFRDMADVLDI 89 (511) Q Consensus 56 ~~i~~~A~~~g~~p~e~~~~~-~~~~~~~~~~~~i 89 (511) ..+..++...|.+|.++.++. ...+.+.-+.+.- T Consensus 14 ~~~v~~~l~~G~~~~~i~~~~l~pam~~vG~~w~~ 48 (201) T cd02070 14 VELVKKALEAGIDPQDIIEEGLAPGMDIVGDKYEE 48 (201) T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999869998999999899999999999838 No 137 >PRK00726 murG N-acetylglucosaminyl transferase; Provisional Probab=72.61 E-value=6.5 Score=18.44 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=27.1 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 817997888999988322247897899999999885898036236437 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ||+++++. -+| ||..+.+. ++..++.+|++|+|++... T Consensus 2 kkI~i~~G---GTG----GHi~Pala---la~~L~~~g~ev~~ig~~~ 39 (359) T PRK00726 2 KKILLAGG---GTG----GHVFPALA---LAEELKKRGWEVLWLGTKR 39 (359) T ss_pred CEEEEEEC---CCH----HHHHHHHH---HHHHHHHCCCEEEEEECCC T ss_conf 88999958---868----99999999---9999983879899997882 No 138 >PRK02261 methylaspartate mutase subunit S; Provisional Probab=71.48 E-value=6.4 Score=18.54 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=46.2 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 88817997888999988322247897899999999885898036236437022799999998399989999999999999 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD 82 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~ 82 (511) .|+|++|.+ +-++.| - +.+.+++|.++-.|++|.+.- ...+|+++++.. ..+ T Consensus 2 rr~~vvi~~----~g~D~H---d---~G~~iva~~l~~~GfeVi~lG---------------~~~~pe~~v~~A---~~~ 53 (137) T PRK02261 2 KKPTVVLGV----IGADCH---A---VGNKILDRALTEAGFEVINLG---------------VMTSQEEFIDAA---IET 53 (137) T ss_pred CCCEEEEEE----ECCCHH---H---HHHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHH---HHC T ss_conf 988799982----188611---7---889999999997897498468---------------879999999999---873 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 999808898867477888899999999888754310 Q gi|255764461|r 83 MADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGD 118 (511) Q Consensus 83 ~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~ 118 (511) .-+..++|- .+-.|....+.+...|.+.|. T Consensus 54 ~ad~igiSs------l~G~~~~~~~~l~~~l~~~g~ 83 (137) T PRK02261 54 DADAILVSS------LYGHGEIDCRGLREKCIEAGL 83 (137) T ss_pred CCCEEEECC------CCCCCCHHHHHHHHHHHHCCC T ss_conf 999999711------112661279999999996799 No 139 >PTZ00126 tyrosyl-tRNA synthetase; Provisional Probab=70.99 E-value=7.1 Score=18.16 Aligned_cols=75 Identities=11% Similarity=0.149 Sum_probs=37.3 Q ss_pred CCEEEEECCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 881799788899998832224-7897899999999885898036-23643702279999999839998999999999999 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGH-AYEMIIADVLARFHRLDGLDVL-FTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH-~~~~i~~D~~~R~~r~~G~~v~-~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) .+++|+-+. |+|.+|||+ +.+.+- ++++++. |-+|. ++.+|=. . .. .|.|- +-+.+....+.++ T Consensus 82 ~P~cY~Gfe---PSGr~Hig~g~v~~ik---vn~l~~A-Gc~v~illADwhA--~--LN--nKmgg-dlekIr~~~~Y~~ 147 (399) T PTZ00126 82 YPICYDGFE---PSGRMHIAQGLLKAIN---VNKLTKA-GCTFVFWIADWFA--M--LN--NKMGG-DLKKIKKVGEYFI 147 (399) T ss_pred CCEEEECCC---CCCCCCHHHHHHHHHH---HHHHHHC-CCEEEEEEEHHHH--H--HC--CCCCC-CHHHHHHHHHHHH T ss_conf 986986747---8898610546788999---9999978-9979999742468--7--56--76799-9999999999999 Q ss_pred HHHHHHCCCCC Q ss_conf 99998088988 Q gi|255764461|r 82 DMADVLDISYD 92 (511) Q Consensus 82 ~~~~~~~i~~D 92 (511) +.|++.|++.| T Consensus 148 ev~kA~Gm~~d 158 (399) T PTZ00126 148 HVWKAAGMNME 158 (399) T ss_pred HHHHHCCCCCC T ss_conf 99998599824 No 140 >cd02167 NMNAT_NadR The NMNAT domain of NadR protein. The NadR protein (hiNadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase Probab=70.19 E-value=5.1 Score=19.24 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=28.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 88322247897899999999885898036236437-02279999999839998999999999999 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD-EHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D-~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) .|||+||. +++.|.+++--.=...||+.+ ++| +.+++.+.-..-+.+.|. T Consensus 8 ~P~H~GH~------~lI~~A~~~~d~l~Vvv~~~~~~~~--------~~~i~~~~R~rWl~~~f~ 58 (157) T cd02167 8 APLHTGHQ------YLIYTAAAQVDELHVIVSGDPEEDG--------QIGITLEDRLRWLREAFP 58 (157) T ss_pred CCCCCCHH------HHHHHHHHHCCEEEEEEECCCCCCC--------CCCCCHHHHHHHHHHHCC T ss_conf 79973789------9999999868969999847886555--------668999999999999779 No 141 >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. Probab=70.14 E-value=7.4 Score=18.06 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=36.1 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999999885898036236437022799999998399989999999999999999808898867477888899999999 Q gi|255764461|r 30 IADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL 109 (511) Q Consensus 30 ~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~ 109 (511) ...+++|.++-.|++|.+.- ...+|+++++...+. .-+..++|- ..-.|....+.+ T Consensus 15 G~~iva~~l~~~GfeVi~lG---------------~~~~~e~~~~~a~e~---~ad~i~vSs------l~g~~~~~~~~l 70 (128) T cd02072 15 GNKILDHAFTEAGFNVVNLG---------------VLSPQEEFIDAAIET---DADAILVSS------LYGHGEIDCKGL 70 (128) T ss_pred HHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHHC---CCCEEEECC------CCCCCCHHHHHH T ss_conf 89999999997897298479---------------889999999999873---999999823------202562489999 Q ss_pred HHHHHHHHC Q ss_conf 888754310 Q gi|255764461|r 110 WKKISDKGD 118 (511) Q Consensus 110 ~~~l~~~G~ 118 (511) .+.|.++|. T Consensus 71 ~~~L~e~G~ 79 (128) T cd02072 71 REKCDEAGL 79 (128) T ss_pred HHHHHHCCC T ss_conf 999996799 No 142 >pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism. Probab=69.93 E-value=7.5 Score=18.01 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=36.3 Q ss_pred CCEEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 88179978889999-88-322247897899999999885898036236437 Q gi|255764461|r 4 REKLYISTAIAYPN-AQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 4 ~~~~~vt~~~Py~n-g~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) -|+++||+.+-+-. .+ -.|++.-+=-++-.+|+..+.+|.+|.+++|-- T Consensus 2 gk~vlITaG~T~E~ID~VR~ItN~SSGkmG~alA~~~~~~Ga~V~li~g~~ 52 (197) T pfam04127 2 GRRVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLIAGKG 52 (197) T ss_pred CCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 989999368864443883153626955999999999997899389972356 No 143 >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process. Probab=68.99 E-value=3.5 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=4.0 Q ss_pred CCCCCCCCCCC Q ss_conf 44444344433 Q gi|255764461|r 171 AYQDKLLSYYE 181 (511) Q Consensus 171 ~~~~~l~~~~~ 181 (511) +++++|.+|+. T Consensus 55 ~~K~~L~~Yl~ 65 (413) T TIGR02407 55 KLKQALIDYLA 65 (413) T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 144 >PRK06732 phosphopantothenate--cysteine ligase; Validated Probab=67.27 E-value=8.4 Score=17.63 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=33.8 Q ss_pred EEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 179978889999-88-32224789789999999988589803623643 Q gi|255764461|r 6 KLYISTAIAYPN-AQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGT 51 (511) Q Consensus 6 ~~~vt~~~Py~n-g~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~ 51 (511) |++||+++-+-. .+ --|++.-+=-++-.+|++...+|++|.+++|- T Consensus 2 kvLITaG~T~E~ID~VR~IsN~SSGk~G~aiA~~~~~~Ga~Vtli~g~ 49 (228) T PRK06732 2 KILITSGGTTEPIDAVRGITNHSTGQLGKIIAETFLQAGHEVTLVTTK 49 (228) T ss_pred EEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 899957887667688447676781499999999999789989999567 No 145 >COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] Probab=67.03 E-value=8.5 Score=17.59 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CCCC Q ss_conf 89999999999999999808898-8674 Q gi|255764461|r 69 TKVFVDQNSRNFRDMADVLDISY-DDFI 95 (511) Q Consensus 69 p~e~~~~~~~~~~~~~~~~~i~~-D~~~ 95 (511) |.+--+++...+.+++++++.++ |.|. T Consensus 88 ~~~~~edm~r~fneqLekl~~Dy~D~yl 115 (391) T COG1453 88 PVKDREDMERIFNEQLEKLGTDYIDYYL 115 (391) T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 3447999999999999984886101020 No 146 >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. Probab=65.19 E-value=9.2 Score=17.35 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=5.6 Q ss_pred CCCCHHHHHHHHH Q ss_conf 3999899999999 Q gi|255764461|r 65 AGVTTKVFVDQNS 77 (511) Q Consensus 65 ~g~~p~e~~~~~~ 77 (511) .|++|++-+.... T Consensus 24 ~g~~~e~aAa~iA 36 (412) T TIGR03326 24 EGVSIEDAAGRVA 36 (412) T ss_pred CCCCHHHHHHHHH T ss_conf 9989999999987 No 147 >pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins. Probab=61.81 E-value=8.3 Score=17.68 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=26.7 Q ss_pred HHHHHHHCCCCEEE--------------CCCCCCCCHHHHHHHH------HCCCCHHHHHHHHHHHH Q ss_conf 99998858980362--------------3643702279999999------83999899999999999 Q gi|255764461|r 34 LARFHRLDGLDVLF--------------TTGTDEHGQKIAKAAQ------NAGVTTKVFVDQNSRNF 80 (511) Q Consensus 34 ~~R~~r~~G~~v~~--------------~~g~D~hg~~i~~~A~------~~g~~p~e~~~~~~~~~ 80 (511) +..|++.+||+|.- +||-|.+=.-|+.... ..|.||+|++.+..+.. T Consensus 13 v~e~L~~~Gy~Vv~l~~~~~~~~~da~VitG~d~N~mGi~d~~t~~pVI~A~G~TaeEI~~~ve~rl 79 (80) T pfam03698 13 IEEALKEKGYEVVRLKNEQDAQGCDACVVTGLDSNMMGIEDTVTKAPVIDASGLTAEEICQEVEERL 79 (80) T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHC T ss_conf 9999997798788678703256658899958986521441334568748668999999999999860 No 148 >KOG2713 consensus Probab=61.51 E-value=11 Score=16.88 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=51.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 17997888999988322247897899999999885--8980362364370227999999983999899999999999999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRL--DGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM 83 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~--~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 83 (511) +.+++.--|+ |.+|||+-.+.+- .|++-+.. +|-.|+| +=.|-| |.-...+|. .-.+.+-.+... T Consensus 14 ~rvfSGIQPT--G~~HLGNYLGai~--~Wv~LQ~~~d~~~~~~f-~vvDlH-------aITvp~dp~-~lrq~~~dm~A~ 80 (347) T KOG2713 14 KRVFSGIQPT--GIPHLGNYLGAIK--PWVQLQNEYDKNILVLF-SVVDLH-------AITVPQDPA-ELRQATHDMAAS 80 (347) T ss_pred CEEEECCCCC--CCCHHHHHHHHHH--HHHHHHHHHCCCCEEEE-EEEECE-------EECCCCCHH-HHHHHHHHHHHH T ss_conf 3467426778--8721443542536--89999887537862799-986110-------012799848-998889999999 Q ss_pred HHHHCCCCC---CCCCCCCHHHHHHH Q ss_conf 998088988---67477888899999 Q gi|255764461|r 84 ADVLDISYD---DFIRTTEKRHHDTC 106 (511) Q Consensus 84 ~~~~~i~~D---~~~rT~~~~~~~~~ 106 (511) +-+.||++. .|....-|+|-++. T Consensus 81 lLAcGIdp~Ks~lF~QS~Vpqh~el~ 106 (347) T KOG2713 81 LLACGIDPEKSSLFVQSDVPQHAELS 106 (347) T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHH T ss_conf 99835682222166402435888999 No 149 >pfam05559 DUF763 Protein of unknown function (DUF763). This family consists of several uncharacterized bacterial and archaeal proteins of unknown function. Probab=61.43 E-value=8.4 Score=17.63 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=10.9 Q ss_pred CCCCCCHHHHHHHHH Q ss_conf 998832224789789 Q gi|255764461|r 16 PNAQPHIGHAYEMII 30 (511) Q Consensus 16 ~ng~lHlGH~~~~i~ 30 (511) ++=|||=||+=+++. T Consensus 3 adLPLH~G~vP~WL~ 17 (319) T pfam05559 3 ADLPLHGGHVPPWLA 17 (319) T ss_pred CCCCCCCCCCCHHHH T ss_conf 777887998986899 No 150 >PRK03094 hypothetical protein; Provisional Probab=61.32 E-value=6.7 Score=18.39 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=27.0 Q ss_pred HHHHHHHCCCCEEE--------------CCCCCCCCHHHHHHHH------HCCCCHHHHHHHHHHHH Q ss_conf 99998858980362--------------3643702279999999------83999899999999999 Q gi|255764461|r 34 LARFHRLDGLDVLF--------------TTGTDEHGQKIAKAAQ------NAGVTTKVFVDQNSRNF 80 (511) Q Consensus 34 ~~R~~r~~G~~v~~--------------~~g~D~hg~~i~~~A~------~~g~~p~e~~~~~~~~~ 80 (511) +..|++.+||+|.- +||-|.+=.=|+..+. ..|.||+|++.+..+.. T Consensus 13 v~~~L~~~GY~Vv~l~~~~~a~~~Da~ViTG~d~N~mGiqd~~t~~pVI~A~GlTaeEI~~~ve~r~ 79 (80) T PRK03094 13 VQQALKQKGYEVVTLNSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRT 79 (80) T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHC T ss_conf 9999997798789668714335678899958976522644134568748678999999999999861 No 151 >COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism] Probab=60.31 E-value=5.2 Score=19.16 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=4.7 Q ss_pred HHHHHHHHHHC Q ss_conf 48999999984 Q gi|255764461|r 467 PKLANKIFDIL 477 (511) Q Consensus 467 P~~ae~i~~~L 477 (511) |..++.|.+.+ T Consensus 367 PEV~~vl~k~~ 377 (397) T COG2046 367 PEVADVLRKSL 377 (397) T ss_pred HHHHHHHHHHC T ss_conf 88999998732 No 152 >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Probab=59.71 E-value=11 Score=16.67 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=24.7 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 17997888999988322247897899999999885898036236437 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) |++|++. -+| ||..+-+ .+++.++.+|++|.|++..+ T Consensus 1 ki~i~~G---GTG----GHi~Pal---ala~~L~~~g~~V~~i~~~~ 37 (350) T cd03785 1 RILIAGG---GTG----GHIFPAL---ALAEELRERGAEVLFLGTKR 37 (350) T ss_pred CEEEEEC---CCH----HHHHHHH---HHHHHHHHCCCEEEEEECCC T ss_conf 9899947---858----9999999---99999997879899998783 No 153 >PRK10517 magnesium-transporting ATPase MgtA; Provisional Probab=57.75 E-value=12 Score=16.44 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=12.0 Q ss_pred HHHHHCCCHHHHHHHH-HHHCC Q ss_conf 9998543224899999-99849 Q gi|255764461|r 458 LAILLQAFVPKLANKI-FDILF 478 (511) Q Consensus 458 l~ilL~Pi~P~~ae~i-~~~Lg 478 (511) ++.++-|++|.++-+| |-+|- T Consensus 717 ~a~~~~~~~Pl~p~qiL~~Nli 738 (900) T PRK10517 717 VASAFLPFLPMLPLHLLIQNLL 738 (900) T ss_pred HHHHHCCCCHHHHHHHHHHHHH T ss_conf 9999706440679999999998 No 154 >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Probab=57.35 E-value=12 Score=16.39 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=46.5 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 88817997888999988322247897899999999885898036236437022799999998399989999999999999 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD 82 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~ 82 (511) .|+|++|-.+ | -=||-++ +.+++|-++-.|++|.+..... ||+|.++.- +++ T Consensus 11 ~rprvlvak~-----G--lDgHd~g---akvia~~l~d~GfeVi~~g~~~---------------tp~e~v~aA---~~~ 62 (143) T COG2185 11 ARPRVLVAKL-----G--LDGHDRG---AKVIARALADAGFEVINLGLFQ---------------TPEEAVRAA---VEE 62 (143) T ss_pred CCCEEEEECC-----C--CCCCCCC---HHHHHHHHHHCCCEEEECCCCC---------------CHHHHHHHH---HHC T ss_conf 9866999536-----7--6544313---1999999985793798158758---------------999999999---864 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 999808898867477888899999999888754310 Q gi|255764461|r 83 MADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGD 118 (511) Q Consensus 83 ~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~ 118 (511) +-...++|- .+-.|...+..+.+.|.++|. T Consensus 63 dv~vIgvSs------l~g~h~~l~~~lve~lre~G~ 92 (143) T COG2185 63 DVDVIGVSS------LDGGHLTLVPGLVEALREAGV 92 (143) T ss_pred CCCEEEEEE------CCCHHHHHHHHHHHHHHHHCC T ss_conf 798899973------440478999999999998197 No 155 >pfam01134 GIDA Glucose inhibited division protein A. Probab=56.37 E-value=8.5 Score=17.59 Aligned_cols=22 Identities=32% Similarity=0.134 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECC Q ss_conf 247897899999999885898036236 Q gi|255764461|r 23 GHAYEMIIADVLARFHRLDGLDVLFTT 49 (511) Q Consensus 23 GH~~~~i~~D~~~R~~r~~G~~v~~~~ 49 (511) |||+.-.. - .....|..|..++ T Consensus 8 GhAG~EAA-~----aaAr~G~~v~Lit 29 (391) T pfam01134 8 GHAGCEAA-L----AAARMGAKVLLIT 29 (391) T ss_pred CHHHHHHH-H----HHHHCCCCEEEEE T ss_conf 78999999-9----9986899689997 No 156 >TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'; InterPro: IPR012758 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0008270 zinc ion binding, 0006350 transcription. Probab=56.03 E-value=13 Score=16.24 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=25.2 Q ss_pred CCCCCCEE---ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHH Q ss_conf 33343033---05860100000221110000002211121110 Q gi|255764461|r 290 VFSHGFIL---HKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329 (511) Q Consensus 290 i~~~g~l~---~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l 329 (511) |+.||-|+ +|-+=.+--.||-|. ..++.+||++.-|.|| T Consensus 615 VI~NG~Ll~GViDk~a~G~e~g~~il-~~i~~~yG~e~ar~~l 656 (901) T TIGR02390 615 VIKNGKLLKGVIDKKAIGAEKGDKIL-DRIVREYGPEAARRFL 656 (901) T ss_pred EEECCEEEEEECCHHHCCCCCHHHHH-HHHHHHHCCHHHHHHH T ss_conf 98668043203020112746637899-9998760746899999 No 157 >COG3911 Predicted ATPase [General function prediction only] Probab=54.37 E-value=14 Score=16.05 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=8.3 Q ss_pred HHHHHHCCCCEEECCCCC Q ss_conf 999885898036236437 Q gi|255764461|r 35 ARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 35 ~R~~r~~G~~v~~~~g~D 52 (511) -+-++-+|+-+.-..|.| T Consensus 26 L~aLa~~Gfatvee~~r~ 43 (183) T COG3911 26 LAALARAGFATVEEAGRD 43 (183) T ss_pred HHHHHHCCCEEECCCHHH T ss_conf 999997586350134166 No 158 >PRK05429 gamma-glutamyl kinase; Provisional Probab=51.97 E-value=15 Score=15.79 Aligned_cols=109 Identities=13% Similarity=0.261 Sum_probs=63.1 Q ss_pred CCCCCEEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC--CHHHHHH- Q ss_conf 988881799---7888999988322247897899999999885898036236437022799999998399--9899999- Q gi|255764461|r 1 MKEREKLYI---STAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV--TTKVFVD- 74 (511) Q Consensus 1 m~~~~~~~v---t~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~--~p~e~~~- 74 (511) |++.||+.| |+-+-.++|.+..+-+...+ +.++ .++.+|++|..||-- .|..-...+|. .|.++.+ T Consensus 5 ~~~~krIVIKiGSs~Lt~~~g~l~~~~i~~l~--~~I~-~L~~~G~evilVSSG-----AIa~G~~~L~~~~rp~~l~~~ 76 (372) T PRK05429 5 LSDARRIVVKVGSSLLTDDGGGLDRARIAELA--RQIA-ALRAAGHEVVLVSSG-----AVAAGRSRLGLPKRPKTLAEK 76 (372) T ss_pred HCCCCEEEEECCCCEEECCCCCCCHHHHHHHH--HHHH-HHHHCCCEEEEECCH-----HHHHHHHHCCCCCCCCCHHHH T ss_conf 51287899991743368988888899999999--9999-999789999998840-----798627760999885637788 Q ss_pred ---------HHHHHHHHHHHHHCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf ---------999999999998088-------9886747788889999999988875431022 Q gi|255764461|r 75 ---------QNSRNFRDMADVLDI-------SYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120 (511) Q Consensus 75 ---------~~~~~~~~~~~~~~i-------~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy 120 (511) +..+.+.+.|..+|+ +.|.| .+..++.-++..+..|.+.|.|- T Consensus 77 QA~AAvGQ~~Lm~~Y~~~f~~~~~~~aQiLlT~~D~---~~r~rylN~r~tl~~Ll~~gvIP 135 (372) T PRK05429 77 QAAAAVGQSRLMQAYEELFARYGITVAQILLTRDDL---SDRERYLNARATLRTLLELGVVP 135 (372) T ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCHHHH---CCHHHHHHHHHHHHHHHHCCCEE T ss_conf 899871569999999999986398557886266564---04589999999999998779600 No 159 >TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490; InterPro: IPR006385 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase. Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the proteins in this family possess PSPase activity. . Probab=51.19 E-value=15 Score=15.70 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=10.5 Q ss_pred CCHHHHCCCCCCCHHHEEECCCCCCCEEC Q ss_conf 00000022111211100002478730111 Q gi|255764461|r 314 IEVIEEVGVDALRYFLVREIACGKDGFYD 342 (511) Q Consensus 314 ~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs 342 (511) ..+.+.+|.|.+. +...+..+|.-|+ T Consensus 120 ~~~A~~~G~~~~~---g~~~~~~~dG~~t 145 (204) T TIGR01490 120 KPLARKLGIDNAI---GTRLEEAEDGIYT 145 (204) T ss_pred HHHHHHCCCCEEE---EEEEEEECCCEEE T ss_conf 9999871866030---1200210277055 No 160 >COG3110 Uncharacterized protein conserved in bacteria [Function unknown] Probab=50.81 E-value=6.7 Score=18.36 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=20.2 Q ss_pred CCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCH Q ss_conf 3033058601000002211100000022111211 Q gi|255764461|r 294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRY 327 (511) Q Consensus 294 g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~ 327 (511) .+|-+||+|||+|+.-.-+-.++=+.-.-=++|+ T Consensus 30 DlLvvdG~K~SgsLlk~k~~iel~~g~hQiVfRv 63 (216) T COG3110 30 DLLVVDGKKVSGSLLKGKDSIELDDGPHQIVFRV 63 (216) T ss_pred CEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEE T ss_conf 0899628645541005741035468970699998 No 161 >PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional Probab=49.47 E-value=16 Score=15.52 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=10.8 Q ss_pred HCCCCEEECCCCCCCCHHHHHHHHHCCCC Q ss_conf 58980362364370227999999983999 Q gi|255764461|r 40 LDGLDVLFTTGTDEHGQKIAKAAQNAGVT 68 (511) Q Consensus 40 ~~G~~v~~~~g~D~hg~~i~~~A~~~g~~ 68 (511) ..|.+|..+||.+. ..+..+|+++|+. T Consensus 65 ~~Gi~v~iISg~~s--~~v~~Ra~~Lgi~ 91 (186) T PRK09484 65 TSGIEVAIITGRKS--KIVEDRMTTLGIT 91 (186) T ss_pred HCCCEEEEEECCCC--HHHHHHHHHHCCC T ss_conf 87996999947888--8999999961898 No 162 >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional Probab=49.42 E-value=16 Score=15.51 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.9 Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHH Q ss_conf 9999885898036236437022799999998399989 Q gi|255764461|r 34 LARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTK 70 (511) Q Consensus 34 ~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~ 70 (511) +||++..+|++| +|+|..-.+...+-+++|+... T Consensus 24 lA~~l~~~G~~V---~gsD~~~~~~~~~L~~~Gi~v~ 57 (459) T PRK00421 24 LAEVLLNLGYKV---SGSDLKESAVTQRLLELGAIIF 57 (459) T ss_pred HHHHHHHCCCEE---EEECCCCCHHHHHHHHCCCEEE T ss_conf 999999689939---9988989978999997879997 No 163 >PRK13475 ribulose bisphosphate carboxylase; Provisional Probab=48.94 E-value=17 Score=15.46 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=18.6 Q ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHH---HHHCCCCHHHHHHHHHHH Q ss_conf 999885898036236437022799999---998399989999999999 Q gi|255764461|r 35 ARFHRLDGLDVLFTTGTDEHGQKIAKA---AQNAGVTTKVFVDQNSRN 79 (511) Q Consensus 35 ~R~~r~~G~~v~~~~g~D~hg~~i~~~---A~~~g~~p~e~~~~~~~~ 79 (511) .||..|.=++--|+++.++ |... .=+.|++|+|-+.....+ T Consensus 5 ~~y~~~~~~~~~~~~~~~d----ila~fr~~P~~gv~~~eaaa~vAaE 48 (459) T PRK13475 5 NRYADLSLKEEDLIAGGRH----VLCAYKMKPKAGFGYLETAAHFAAE 48 (459) T ss_pred CHHHHCCCCCCCCCCCCCE----EEEEEEECCCCCCCHHHHHHHHHHC T ss_conf 0344266789755548966----9999985389987989998898870 No 164 >pfam06948 consensus Probab=48.70 E-value=17 Score=15.44 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=37.7 Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 6437022799999998399989999999999--9999998088988674778888999999998887543102 Q gi|255764461|r 49 TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRN--FRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDI 119 (511) Q Consensus 49 ~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~--~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~i 119 (511) ...|.+..++..+..+.|+.|.. |..+.+. +.+.++.+||...+.. +...++.++||. T Consensus 49 ae~d~~~~~~l~el~~~gv~~~A-C~~~Ae~~gi~~~L~~~gi~v~~vG------------~~it~~l~~Gy~ 108 (112) T pfam06948 49 AEGDQEVLKILSELLQLGETPLA-CQRVAENFGIAEDLQKQGIRVEYVG------------EIIAELLEKGYE 108 (112) T ss_pred HCCCHHHHHHHHHHHHCCCEEHH-HHHHHHHCCCHHHHHHCCCEEEECC------------HHHHHHHHCCCE T ss_conf 44869999999999986981637-8899987494678985796799865------------989999988997 No 165 >COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only] Probab=48.04 E-value=17 Score=15.37 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=54.6 Q ss_pred EEEEE-CCCCCCCCCCCHHHHHHHHH-HHH----HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHH Q ss_conf 17997-88899998832224789789-999----99998858980362364370227999999983999-8999999999 Q gi|255764461|r 6 KLYIS-TAIAYPNAQPHIGHAYEMII-ADV----LARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT-TKVFVDQNSR 78 (511) Q Consensus 6 ~~~vt-~~~Py~ng~lHlGH~~~~i~-~D~----~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~-p~e~~~~~~~ 78 (511) |.+|+ .-=--.+|.+|.++-+..+- +.+ =.+-+...|-+|-.+||.|. ..++.+|+++|++ .-+=...-.. T Consensus 9 kLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~s--~ive~Ra~~LGI~~~~qG~~dK~~ 86 (170) T COG1778 9 KLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRDS--PIVEKRAKDLGIKHLYQGISDKLA 86 (170) T ss_pred EEEEEECCCEEECCEEEECCCCCEEEEEECCCCHHHHHHHHCCCEEEEEECCCC--HHHHHHHHHCCCCEEEECHHHHHH T ss_conf 289994564056674888489756543303576999999985992899967878--789999997597002424186899 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999998088988 Q gi|255764461|r 79 NFRDMADVLDISYD 92 (511) Q Consensus 79 ~~~~~~~~~~i~~D 92 (511) .+++.++++|+++. T Consensus 87 a~~~L~~~~~l~~e 100 (170) T COG1778 87 AFEELLKKLNLDPE 100 (170) T ss_pred HHHHHHHHHCCCHH T ss_conf 99999999489989 No 166 >PRK11890 phosphate acetyltransferase; Provisional Probab=47.85 E-value=17 Score=15.35 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=51.6 Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 8999999998858980362364370227999999983999-899999999999999998088988674778888999999 Q gi|255764461|r 29 IIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT-TKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCR 107 (511) Q Consensus 29 i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~-p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~ 107 (511) -..+++.+-++.....|.++.+.|+.=+.-...|.++|+- |- .-=..+++++..+.+|++.+.|- -.++++.+..- T Consensus 9 ~~~~li~~a~~~~pkrvava~aed~~vL~Aa~~a~~eGia~PI--LvG~~~~I~~~a~~~gldl~~~e-Iid~~~~~~~a 85 (312) T PRK11890 9 KYERLIARARTLPPLPTAVVHPCDESSLRGAVEAAQLGLITPI--LVGPRARIRAVAEECGLDLSDYQ-IVDAPHSHAAA 85 (312) T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE--EECCHHHHHHHHHHCCCCCCCCE-EECCCCCHHHH T ss_conf 9999999985489962999847997999999999986983799--98999999999998599978886-87899828999 Q ss_pred HHHHHHHHHHC Q ss_conf 99888754310 Q gi|255764461|r 108 ILWKKISDKGD 118 (511) Q Consensus 108 ~~~~~l~~~G~ 118 (511) +.-.+|..+|. T Consensus 86 ~~av~lv~~g~ 96 (312) T PRK11890 86 AKAVELVRAGE 96 (312) T ss_pred HHHHHHHCCCC T ss_conf 99999833788 No 167 >TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . The S4 domain is a small domain consisting of 60-65 amino acid residues that probably mediates binding to RNA. This family consists of organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit. Probab=47.39 E-value=7 Score=18.22 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=19.9 Q ss_pred CCCCCCCCCEEECCCCCCH-----HHCCCCCCCC Q ss_conf 2323334303305860100-----0002211100 Q gi|255764461|r 287 PKKVFSHGFILHKGEKISK-----SLGNVIDPIE 315 (511) Q Consensus 287 p~~i~~~g~l~~~G~KMSK-----S~GN~I~~~e 315 (511) -+.++.|||+++||+|-.- |-|-.|..+| T Consensus 118 ARQLVsHGhi~vNGk~VdIPSy~v~~Gd~i~ikE 151 (217) T TIGR01017 118 ARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKE 151 (217) T ss_pred HHHHHHCCEEEECCEEECCCEEEECCCCEEEEEE T ss_conf 6356408807879818522406707998899810 No 168 >PRK12565 30S ribosomal protein S4; Provisional Probab=47.31 E-value=7.1 Score=18.19 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=21.5 Q ss_pred CCCCCCCCCEEECCCCCCH-----HHCCCCCCCCH Q ss_conf 2323334303305860100-----00022111000 Q gi|255764461|r 287 PKKVFSHGFILHKGEKISK-----SLGNVIDPIEV 316 (511) Q Consensus 287 p~~i~~~g~l~~~G~KMSK-----S~GN~I~~~e~ 316 (511) -+.++.|||+++||+|+.- +-|-+|...+- T Consensus 106 ARQlV~Hghi~vng~kVdIPSy~vk~GDvI~vkek 140 (197) T PRK12565 106 ARQMVNHGHILVNGKKVNIPSYEVKVGDEITLREK 140 (197) T ss_pred HHHHHHCCCEEECCEEECCCCEEECCCCEEEECHH T ss_conf 86674078889799895588767069999997332 No 169 >pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate. Probab=46.32 E-value=18 Score=15.18 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=56.2 Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHH Q ss_conf 9999998858980362364370227999999983999899999999999999998088988674---7788889999999 Q gi|255764461|r 32 DVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFI---RTTEKRHHDTCRI 108 (511) Q Consensus 32 D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~---rT~~~~~~~~~~~ 108 (511) -++.|-+ .....+.|.-|.|+.=+.....+.++|+----++ =..+.+++..+.+|++.+.+. -++++...+.++. T Consensus 5 ~i~~~ak-~~~krIvf~eged~rvl~Aa~~~~~egi~~PILv-G~~~~I~~~~~~~gl~~~~~eIid~~~~~~~~~y~~~ 82 (319) T pfam01515 5 RIFERAK-SAKKRIVFPEGEDERVLKAAKELLEEGIADPILI-GNEIEIKAKALGLGLDLSGIEIVDPETSPRDEEYADE 82 (319) T ss_pred HHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHH T ss_conf 9999998-4899899958799799999999998699279998-8999999999976989667789888887679999999 Q ss_pred HHHHHHHHHCCCCCCHH Q ss_conf 98887543102211000 Q gi|255764461|r 109 LWKKISDKGDIYKGCYS 125 (511) Q Consensus 109 ~~~~l~~~G~iy~~~~~ 125 (511) ++++...||..++.... T Consensus 83 ~~~~~~rkG~~~~~a~~ 99 (319) T pfam01515 83 FYELRKHKGMTPEIARE 99 (319) T ss_pred HHHHHHCCCCCHHHHHH T ss_conf 99997238999999999 No 170 >COG1568 Predicted methyltransferases [General function prediction only] Probab=46.00 E-value=18 Score=15.15 Aligned_cols=53 Identities=6% Similarity=-0.068 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHC--CCCCCCCCCCCCCC Q ss_conf 999999888754310221100010113343015566721--11222222223320 Q gi|255764461|r 104 DTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVY--KGADGQYYNAQHNP 156 (511) Q Consensus 104 ~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~--~~~~~~~~~~~~~p 156 (511) ..+-.+...|.+.|++...+..+.+-.+...+...-.+. +...|++|+..|-+ T Consensus 49 p~v~~i~~~l~~egiv~~~~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeGrgi~ 103 (354) T COG1568 49 PLVASILEILEDEGIVKIEEGGVELTEKGEELAEELGIKKKYDYTCECCEGRGIS 103 (354) T ss_pred HHHHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 6899999999866818985484764262699999848774666414665686503 No 171 >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Probab=44.86 E-value=19 Score=15.03 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=19.5 Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC Q ss_conf 988881799788899998832224789789999999988589803623 Q gi|255764461|r 1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT 48 (511) Q Consensus 1 m~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~ 48 (511) |-+-||+++. +.|. +-.|=..| ++|-++..|++|.-+ T Consensus 1 mL~gK~Illg-----VtGs-----IAayK~~~-L~r~L~k~G~~V~vv 37 (392) T PRK05579 1 MLAGKRIVLG-----VSGG-----IAAYKALE-LVRRLRKAGADVRVV 37 (392) T ss_pred CCCCCEEEEE-----ECCH-----HHHHHHHH-HHHHHHHCCCEEEEE T ss_conf 9999989999-----8337-----99999999-999998789989999 No 172 >PRK01904 hypothetical protein; Provisional Probab=44.42 E-value=14 Score=16.02 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=26.1 Q ss_pred HHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHC-CCCCCCH Q ss_conf 7654331012323334303305860100000221110000002-2111211 Q gi|255764461|r 278 FLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEV-GVDALRY 327 (511) Q Consensus 278 ~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~-g~D~lR~ 327 (511) ..+|..+++|..| .+|.+||+|+|+|+=+.-...++-+.- .-=++|| T Consensus 18 ~a~A~tL~lp~~i---elL~vdG~k~~~slf~~~~sl~L~~G~~HQIvfRy 65 (217) T PRK01904 18 ASFAGMVTTSSNV---EFLAIDGQKASKSLLGKAKSFNVDDTQVHQVVVRV 65 (217) T ss_pred HHHHHHCCCCCCC---EEEEECCEECCCCCCCCCCCEECCCCCCEEEEEEE T ss_conf 9887514078871---38997682777654567761563799704899998 No 173 >CHL00113 rps4 ribosomal protein S4; Reviewed Probab=43.74 E-value=8 Score=17.82 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=21.0 Q ss_pred CCCCCCCCCCEEECCCCCCH-----HHCCCCCCCC Q ss_conf 12323334303305860100-----0002211100 Q gi|255764461|r 286 LPKKVFSHGFILHKGEKISK-----SLGNVIDPIE 315 (511) Q Consensus 286 ~p~~i~~~g~l~~~G~KMSK-----S~GN~I~~~e 315 (511) --+.++.|||+++||+|+.- .-|-+|...+ T Consensus 106 ~ARQlV~HgHi~VNgkkVnIPSy~vk~GDvI~v~~ 140 (201) T CHL00113 106 AARQLVNHGHILVNGRIVDIPSYRCKPRDIITIKD 140 (201) T ss_pred HHHHEEECCEEEECCEEECCCCEEEECCCEEEECC T ss_conf 76105846629989989337875842799899753 No 174 >TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family; InterPro: IPR012741 This entry describes a subfamily of the B12 binding domain proteins that include corrinoid proteins specific to four different, mutually non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.; GO: 0031419 cobalamin binding, 0050897 cobalt ion binding, 0015948 methanogenesis. Probab=42.97 E-value=7.6 Score=17.97 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=42.7 Q ss_pred CHHCCCCCCCCHHCCHHHHHHHHHHHHCC---CCCCCCCCE------------EECCCCCCHHHCCCCCCCCHHHHCCC- Q ss_conf 00004564321000102477654331012---323334303------------30586010000022111000000221- Q gi|255764461|r 259 DLHVIGKDILRFHAIYWPAFLLSANLPLP---KKVFSHGFI------------LHKGEKISKSLGNVIDPIEVIEEVGV- 322 (511) Q Consensus 259 d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p---~~i~~~g~l------------~~~G~KMSKS~GN~I~~~e~l~~~g~- 322 (511) |||=|||+|+- +||.+.|+..- +.|+++.|+ +..-.=|-+|--|..+..|.|.+-|. T Consensus 97 DvHdIGk~iV~-------~mL~~~GF~v~DLGrDVp~~~vvE~v~~~~~~kv~l~~sALMTTtM~~qk~i~d~L~E~g~R 169 (201) T TIGR02370 97 DVHDIGKNIVV-------TMLRANGFDVIDLGRDVPIDTVVEKVKKEKPEKVMLTGSALMTTTMLGQKDIEDKLKEEGLR 169 (201) T ss_pred CCCHHHHHHHH-------HHHHCCCCEEEECCCCCCCCCCEEHHEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 31110137999-------98750696688737555552011012100786678863124788768899999987425886 Q ss_pred CCCCHHHEEECCCCCC Q ss_conf 1121110000247873 Q gi|255764461|r 323 DALRYFLVREIACGKD 338 (511) Q Consensus 323 D~lR~~l~~~~~~~~D 338 (511) |.+..- .--+|.++| T Consensus 170 d~vk~m-~GGApv~q~ 184 (201) T TIGR02370 170 DRVKVM-VGGAPVTQD 184 (201) T ss_pred CCCCEE-ECCCCCCHH T ss_conf 535622-568764557 No 175 >PRK03641 hypothetical protein; Provisional Probab=42.61 E-value=15 Score=15.74 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=28.5 Q ss_pred HHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHH Q ss_conf 5433101232333430330586010000022111000000221112111 Q gi|255764461|r 280 LSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYF 328 (511) Q Consensus 280 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~ 328 (511) +|..+++|..| ..|.+||+|+|.|+-..-...++-+.-.-=++||- T Consensus 19 ~A~tL~lp~~i---elL~vnGk~v~~slf~~~~~l~L~~G~hQIvfry~ 64 (220) T PRK03641 19 FATTLRLSPEV---DLLVLDGKKVSSSLLRGADSIELDNGPHQLVFRVE 64 (220) T ss_pred HEEEEECCCCE---EEEEECCEECCCCCCCCCCEEEECCCCEEEEEEEE T ss_conf 50466479864---69998898854434567752671799448999971 No 176 >COG3286 Uncharacterized protein conserved in archaea [Function unknown] Probab=42.45 E-value=21 Score=14.77 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=6.7 Q ss_pred HHHHHHHHHHHHHHHCCH Q ss_conf 999999999987750358 Q gi|255764461|r 393 VCSRVLQEIRENMQNQLI 410 (511) Q Consensus 393 ~l~~~~~~v~~a~e~~~~ 410 (511) ++.++..+..+.+....| T Consensus 120 ev~E~vreLse~~~E~~~ 137 (204) T COG3286 120 EVVELVRELSEVYREARF 137 (204) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999872 No 177 >PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional Probab=42.42 E-value=21 Score=14.77 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.4 Q ss_pred HHHHHHHHCCCCHHHHHHH Q ss_conf 9999999839998999999 Q gi|255764461|r 57 KIAKAAQNAGVTTKVFVDQ 75 (511) Q Consensus 57 ~i~~~A~~~g~~p~e~~~~ 75 (511) +...+-+++|.+..++|++ T Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (411) T PRK08099 6 YLKTAIKQQGCTLQQVADA 24 (411) T ss_pred HHHHHHHHHCCCHHHHHHH T ss_conf 9999999848829887654 No 178 >PRK05327 rpsD 30S ribosomal protein S4; Validated Probab=42.01 E-value=8.6 Score=17.55 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEECCCCCCHH-----HCCCCCCCC Q ss_conf 23233343033058601000-----002211100 Q gi|255764461|r 287 PKKVFSHGFILHKGEKISKS-----LGNVIDPIE 315 (511) Q Consensus 287 p~~i~~~g~l~~~G~KMSKS-----~GN~I~~~e 315 (511) -+.++.|||+++||+|+.-. -|-+|...+ T Consensus 110 ARQ~v~Hghi~vNg~~v~ips~~~k~gd~i~vke 143 (201) T PRK05327 110 ARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVRE 143 (201) T ss_pred HHHEEEEEEEEECCEEECCCCEECCCCCEEEECC T ss_conf 6200644059989998357874738999999770 No 179 >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Probab=41.71 E-value=21 Score=14.69 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=4.8 Q ss_pred CCCHHHHHHHHHH Q ss_conf 9998999999999 Q gi|255764461|r 66 GVTTKVFVDQNSR 78 (511) Q Consensus 66 g~~p~e~~~~~~~ 78 (511) +.+.+++.+.+-+ T Consensus 83 ~~t~e~i~~~FG~ 95 (701) T COG0317 83 PVTEELIEEIFGK 95 (701) T ss_pred CCCHHHHHHHHCH T ss_conf 8899999988788 No 180 >pfam10009 DUF2252 Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function. Probab=41.43 E-value=21 Score=14.66 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=54.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC------------CHHHHHHHHHCCCCHH---HHHHHHH Q ss_conf 899998832224789789999999988589803623643702------------2799999998399989---9999999 Q gi|255764461|r 13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH------------GQKIAKAAQNAGVTTK---VFVDQNS 77 (511) Q Consensus 13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h------------g~~i~~~A~~~g~~p~---e~~~~~~ 77 (511) .....|+.|+++.|.|- .-.|.-|+=+-+.||= .+-+.+.|...|.+.. ++++.+. T Consensus 41 ~v~icGD~Hl~NFG~~~---------s~eg~lvFdiNDFDEa~~gp~ewDlkRLa~S~~laa~~~gl~~~~~~~~v~~~~ 111 (383) T pfam10009 41 RVWICGDCHLENFGLFA---------SPEGRLVFDINDFDEALPGPFEWDLKRLAASLVLAARENGLSEKDARRLVRAFA 111 (383) T ss_pred CEEEECCCHHHHCCCCC---------CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 54686351164157763---------889867756887653454872999999999999999986989899999999999 Q ss_pred HHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999980889--88674778888999999998887543 Q gi|255764461|r 78 RNFRDMADVLDIS--YDDFIRTTEKRHHDTCRILWKKISDK 116 (511) Q Consensus 78 ~~~~~~~~~~~i~--~D~~~rT~~~~~~~~~~~~~~~l~~~ 116 (511) +.+.+.+..+.=. .+.|+-|. ..-...+++++++...+ T Consensus 112 ~~Y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ka~~r 151 (383) T pfam10009 112 RSYRERLRDYAERDLLDRWYFTS-DNTRGVVRKALKKARKR 151 (383) T ss_pred HHHHHHHHHHCCCCHHHHHHCCH-HHHHHHHHHHHHHHHHH T ss_conf 99999999871698777553251-33469999999999986 No 181 >TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. . Probab=41.28 E-value=12 Score=16.39 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=5.8 Q ss_pred CCCCCCHHCCCCCCC Q ss_conf 024110000456432 Q gi|255764461|r 254 KFWPADLHVIGKDIL 268 (511) Q Consensus 254 ~~w~~d~~~~G~Dii 268 (511) +|.|.|-|--|.||. T Consensus 105 rylPddaqtaGrdia 119 (359) T TIGR01819 105 RYLPDDAQTAGRDIA 119 (359) T ss_pred CCCCCHHHHHHHHHH T ss_conf 657641223222446 No 182 >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys Probab=41.27 E-value=21 Score=14.64 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=5.3 Q ss_pred CCCCHHHHCCC Q ss_conf 11000000221 Q gi|255764461|r 312 DPIEVIEEVGV 322 (511) Q Consensus 312 ~~~e~l~~~g~ 322 (511) ...++++++|. T Consensus 121 ~~k~ll~klGi 131 (222) T cd07018 121 FFKGLLDKLGV 131 (222) T ss_pred CHHHHHHHCCC T ss_conf 27889998698 No 183 >KOG0517 consensus Probab=40.58 E-value=22 Score=14.57 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=11.3 Q ss_pred EEECCCCCCCEECCCCCCCCHHHHHHHHHHHC Q ss_conf 00024787301112221110013321102210 Q gi|255764461|r 330 VREIACGKDGFYDKDGLKKRVNADLANGIGNL 361 (511) Q Consensus 330 ~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~ 361 (511) ++....|.|- .+...+..+. .+|...+-|+ T Consensus 759 vss~d~G~DE-~saq~LlkrH-~~l~~El~a~ 788 (2473) T KOG0517 759 VSSEDVGHDE-ASAQALLKRH-RDLEEELRAY 788 (2473) T ss_pred CCCHHCCCCH-HHHHHHHHHH-HHHHHHHHHH T ss_conf 1402027864-8899999999-9999999984 No 184 >pfam03185 CaKB Calcium-activated potassium channel, beta subunit. Probab=40.33 E-value=11 Score=16.83 Aligned_cols=16 Identities=25% Similarity=0.926 Sum_probs=11.8 Q ss_pred CCHHCCHHHHHHHHHH Q ss_conf 2100010247765433 Q gi|255764461|r 268 LRFHAIYWPAFLLSAN 283 (511) Q Consensus 268 i~Fh~i~~pa~l~~~~ 283 (511) +-||+++||.+++..| T Consensus 166 ~lfH~lfWP~l~l~gG 181 (201) T pfam03185 166 VLLHCLLWPTLMLTGG 181 (201) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999889999762 No 185 >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. . Probab=39.63 E-value=4.9 Score=19.36 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=35.9 Q ss_pred HHHCCCCCCCCCCEEEC--CCCCCHH--HCCCCCCCCHHHHCCCCCCCH Q ss_conf 31012323334303305--8601000--002211100000022111211 Q gi|255764461|r 283 NLPLPKKVFSHGFILHK--GEKISKS--LGNVIDPIEVIEEVGVDALRY 327 (511) Q Consensus 283 ~~~~p~~i~~~g~l~~~--G~KMSKS--~GN~I~~~e~l~~~g~D~lR~ 327 (511) +.+|||.|+.|+.=.++ |-+|-.. -|-.|++++|+++||-|++=. T Consensus 187 efRLpKei~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~~~YGfDAVFI 235 (462) T TIGR01316 187 EFRLPKEIVETEVKKLKKLGVKFRTDYLVGKTVTLEELLEKYGFDAVFI 235 (462) T ss_pred CCCCCHHHHHHHHHHHHHCCEEEEECCEECCCHHHHHHHHHCCCCEEEE T ss_conf 8548757889888876326637994437505112888887519707999 No 186 >TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase; InterPro: IPR001980 Temperature-sensitive mutants of Escherichia coli, defective in the transfer of 3-deoxy-D-manno-octulosonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A, have been used to map KDO transferase activity on the E. coli chromosome . The KDO transferase gene, designated kdtA, was shown to code for a 43kDa polypeptide. Overexpression of this single gene product greatly stimulates incorporation of two stereochemically distinct KDO residues during lipopolysaccharide biosynthesis in extracts of E. coli . From these experiments this protein was thought to play a role in lipopolysaccharide biosynthesis, however now it is annotated as phosphopantetheine adenylyltransferase (2.7.7.3 from EC), which catalyses the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine to give dephospho-CoA (DPCOA) and pyrophosphate in the fourth (and penultimate) step of coenzyme A biosynthesis .; GO: 0004595 pantetheine-phosphate adenylyltransferase activity, 0015937 coenzyme A biosynthetic process. Probab=39.47 E-value=18 Score=15.13 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=28.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH-HCCCCCCC Q ss_conf 883222478978999999998858980362364370227999999983-999899999999999999998-08898867 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTTKVFVDQNSRNFRDMADV-LDISYDDF 94 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p~e~~~~~~~~~~~~~~~-~~i~~D~~ 94 (511) .|+|.||+ |++.|-.++ .|=.+|- |...-.|. =-|.+|=++...+..++.+++ -|+..+.| T Consensus 9 DP~T~GHL------DiikRa~~l--FDeV~Va--------v~~N~~K~~~f~~eeR~~~~~~~tk~~l~~~~NV~V~~f 71 (163) T TIGR01510 9 DPITNGHL------DIIKRALKL--FDEVIVA--------VAINPSKKPLFSLEERVELIEDATKKHLKKIPNVEVDVF 71 (163) T ss_pred CCCCCCHH------HHHHHHHHH--CCEEEEE--------EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 98743638------899999862--2177788--------887488985689899999999999997236981489840 No 187 >TIGR01057 topA_arch DNA topoisomerase I; InterPro: IPR005739 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase I from archaea, which is more closely related to bacterial than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome. Probab=39.17 E-value=23 Score=14.42 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=33.2 Q ss_pred CCCEEE-CCCCCCCCHHHHHHHHHCCCCHHH-HHHHH------HHHHHHHHHHHCCCCC Q ss_conf 980362-364370227999999983999899-99999------9999999998088988 Q gi|255764461|r 42 GLDVLF-TTGTDEHGQKIAKAAQNAGVTTKV-FVDQN------SRNFRDMADVLDISYD 92 (511) Q Consensus 42 G~~v~~-~~g~D~hg~~i~~~A~~~g~~p~e-~~~~~------~~~~~~~~~~~~i~~D 92 (511) |-+-++ -|++|-=|+=|==+|.|-+...+. .+.+| .+++.+-|+.+.+..| T Consensus 97 ~a~~y~~AcDYDiEG~lIGf~alky~Cg~~~~~A~RMkFStLt~~di~rAy~n~e~~~d 155 (637) T TIGR01057 97 GADEYIVACDYDIEGELIGFKALKYACGVEKLKAKRMKFSTLTKKDIRRAYKNPEIEID 155 (637) T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCEEC T ss_conf 35435676210356530767898750886400013343000237999999738894430 No 188 >pfam05045 RgpF Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors. Probab=38.59 E-value=23 Score=14.36 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=7.1 Q ss_pred CEECCCCCCCCCCCCCC Q ss_conf 00003454434466644 Q gi|255764461|r 156 PVQWMEEEGYFFRLSAY 172 (511) Q Consensus 156 p~~~~~~~~~f~~l~~~ 172 (511) |+.+.+-+..|.+...+ T Consensus 185 ~~~IlKrr~~F~k~~~~ 201 (498) T pfam05045 185 RTPILKRRVFFHDVKAL 201 (498) T ss_pred CCHHHHCCCCCCCCHHH T ss_conf 32676436875440454 No 189 >PRK08655 prephenate dehydrogenase; Provisional Probab=37.99 E-value=24 Score=14.29 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC Q ss_conf 999999998858980362364370227999999983999 Q gi|255764461|r 30 IADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT 68 (511) Q Consensus 30 ~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~ 68 (511) ++-.++|+++..||+| -++|.|.. +-+..|.++|+. T Consensus 12 MG~~Fa~~f~~sGyeV-~I~gRd~~--k~~~va~~LGv~ 47 (441) T PRK08655 12 LGKWFARFLKDKGYEV-IVWGRDPK--KGKEVAKELGVE 47 (441) T ss_pred HHHHHHHHHHHCCCEE-EEEECCCC--HHHHHHHHHCCC T ss_conf 7799999998679889-99815731--356788873862 No 190 >PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed Probab=37.74 E-value=24 Score=14.27 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=14.7 Q ss_pred CCCCEEECCCCCCHHHCCCCCCCC----HHHHCCCCCC Q ss_conf 343033058601000002211100----0000221112 Q gi|255764461|r 292 SHGFILHKGEKISKSLGNVIDPIE----VIEEVGVDAL 325 (511) Q Consensus 292 ~~g~l~~~G~KMSKS~GN~I~~~e----~l~~~g~D~l 325 (511) +|+|=..-|. |+.|..+.|...- +.--.|+|.+ T Consensus 262 I~aHrA~~ga-~tr~p~~Gis~~~~l~KL~RLaGaD~~ 298 (411) T PRK09549 262 IMAHPAVSGA-YTASKLYGISSPLLLGKLLRYAGADFS 298 (411) T ss_pred EEECCCCCCE-EECCCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 7631354412-204865651299999999999088844 No 191 >TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily; InterPro: IPR014344 Members of this entry belong to the family of polysaccharide deacetylases. All are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the gene coding region for the EpsH homologue that is the putative exosortase gene.. Probab=37.68 E-value=24 Score=14.26 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=39.9 Q ss_pred HHHHHHHCCCCHHHH------HHHHHHHHHHHHHHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHC Q ss_conf 999999839998999------99999999999998088988674778---88899999999888754310 Q gi|255764461|r 58 IAKAAQNAGVTTKVF------VDQNSRNFRDMADVLDISYDDFIRTT---EKRHHDTCRILWKKISDKGD 118 (511) Q Consensus 58 i~~~A~~~g~~p~e~------~~~~~~~~~~~~~~~~i~~D~~~rT~---~~~~~~~~~~~~~~l~~~G~ 118 (511) =++.|-+.-+++.++ |++|++.+.++|+.-+++-+.| |. -+.|...|++|.. +|| T Consensus 11 FQVsAfa~~i~r~~Wd~l~~RVErNt~~iL~Ll~~~~~kATFF--tLGWvAERyP~LVr~Iv~----~GH 74 (274) T TIGR03006 11 FQVSAFAGHIPRSEWDSLPCRVERNTDRILDLLDRHGVKATFF--TLGWVAERYPELVRRIVA----AGH 74 (274) T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHCCHHHHHHHHH----CCC T ss_conf 3588650468802367886127788899999997168815542--403475405288999997----198 No 192 >PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional Probab=37.26 E-value=24 Score=14.34 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=18.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 8832224789789999999988589803623643 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT 51 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~ 51 (511) .|+|.||+ |++.|-.++-. +|..+.|. T Consensus 11 DPit~GHl------dii~ra~~lfD-~viv~v~~ 37 (159) T PRK00168 11 DPITNGHL------DIIERASKLFD-EVIVAVAI 37 (159) T ss_pred CCCCHHHH------HHHHHHHHHCC-EEEEECCC T ss_conf 98844799------99999998679-99994056 No 193 >pfam00797 Acetyltransf_2 N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. Probab=36.36 E-value=21 Score=14.66 Aligned_cols=13 Identities=15% Similarity=-0.146 Sum_probs=4.7 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999999808 Q gi|255764461|r 76 NSRNFRDMADVLD 88 (511) Q Consensus 76 ~~~~~~~~~~~~~ 88 (511) ...-+...++.+| T Consensus 52 lN~Lf~~~L~~LG 64 (240) T pfam00797 52 LNGLFYWALTELG 64 (240) T ss_pred HHHHHHHHHHHCC T ss_conf 3399999999869 No 194 >pfam11062 DUF2863 Protein of unknown function (DUF2863). This bacterial family of proteins have no known function. Probab=35.94 E-value=13 Score=16.28 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=4.6 Q ss_pred CCCHHHHHHHH Q ss_conf 43224899999 Q gi|255764461|r 463 QAFVPKLANKI 473 (511) Q Consensus 463 ~Pi~P~~ae~i 473 (511) +=|-|..|+.. T Consensus 360 ~~f~~EyCdDC 370 (398) T pfam11062 360 ERFPPEYCEDC 370 (398) T ss_pred HCCCCHHHCCC T ss_conf 11894333146 No 195 >pfam10266 Strumpellin Hereditary spastic paraplegia protein strumpellin. This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Probab=35.54 E-value=26 Score=14.02 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=10.2 Q ss_pred CCCEEECCCCCCCCHHHHHHHHHCCCCH Q ss_conf 9803623643702279999999839998 Q gi|255764461|r 42 GLDVLFTTGTDEHGQKIAKAAQNAGVTT 69 (511) Q Consensus 42 G~~v~~~~g~D~hg~~i~~~A~~~g~~p 69 (511) |.-|-...+||.+ |....|...-++| T Consensus 271 G~tvnL~~~W~~y--kAA~~Al~nt~~~ 296 (1080) T pfam10266 271 GITVDLSVAWEPF--KAARTAINNTITQ 296 (1080) T ss_pred CEEEEHHHHHHCC--HHHHHHHHHHCCH T ss_conf 2787657467422--9899999835688 No 196 >PRK12496 hypothetical protein; Provisional Probab=35.46 E-value=26 Score=14.02 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=18.6 Q ss_pred HCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC Q ss_conf 011334301556672111222222223320000 Q gi|255764461|r 127 WYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW 159 (511) Q Consensus 127 ~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~ 159 (511) ++|..|++.++.. ...+.|+.||+|+.. T Consensus 130 ~~C~gC~~~~~~~-----~~~~~C~~CGs~l~r 157 (166) T PRK12496 130 YVCKGCKKMYPEN-----YPDEVCDVCGSPVKR 157 (166) T ss_pred EECCCCCCCCCCC-----CCCCCCCCCCCHHHH T ss_conf 9999878717788-----998838788989999 No 197 >cd02163 PPAT_a Phosphopantetheine adenylyltransferase (PPAT) is an essential enzyme in bacteria that catalyses a rate-limiting step in coenzyme A (CoA) biosynthesis, by transferring an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA). Each phosphopantetheine adenylyltransferase (PPAT) subunit displays a dinucleotide-binding fold that is structurally similar to that in class I aminoacyl-tRNA synthetases. Superposition of bound adenylyl moieties from dPCoA in PPAT and ATP in aminoacyl-tRNA synthetases suggests nucleophilic attack by the 4'-phosphopantetheine on the -phosphate of ATP. The proposed catalytic mechanism implicates transition state stabilization by PPAT without involving functional groups of the enzyme in a chemical sense in the reaction. The homologous active site attachment of ATP and the structural distribution of predicted sequence-binding motifs in PPAT classify the enzyme as belonging to the nucleotidyltransferase superfamily. Probab=34.94 E-value=26 Score=14.02 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 883222478978999999998858 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLD 41 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~ 41 (511) .|+|.||+ |++.|..++= T Consensus 8 DP~t~GHl------dii~ra~~lF 25 (152) T cd02163 8 DPITNGHL------DIIERASRLF 25 (152) T ss_pred CCCCCCHH------HHHHHHHHHC T ss_conf 98840099------9999999878 No 198 >TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit; InterPro: IPR014279 Nitrogenase, also called dinitrogenase, is the enzyme which catalyses the conversion of molecular nitrogen to ammonia (biological nitrogen fixation). The most widespread and most efficient nitrogenase contains a molybdenum cofactor. This entry, also known as the VnfG family, represents the delta subunit of the vanadium-containing V nitrogenase. It is homologous to AnfG, the delta subunit of the iron-only nitrogenase.. Probab=34.93 E-value=26 Score=13.96 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=16.2 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 65312332103455589556566789999999999877 Q gi|255764461|r 368 MILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENM 405 (511) Q Consensus 368 f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~ 405 (511) +..+-+.|..+ ..-|+.|+-+.+...-++..+.+.| T Consensus 34 ~~~~Ll~GE~~--~~eTp~dklFYaDA~~l~~d~k~~~ 69 (109) T TIGR02930 34 KAGKLLNGEKV--KKETPMDKLFYADAKVLVSDLKERF 69 (109) T ss_pred HHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99787508723--2025124656764899999976317 No 199 >TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein; InterPro: IPR011980 Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of Escherichia coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule .. Probab=34.78 E-value=22 Score=14.60 Aligned_cols=55 Identities=16% Similarity=0.381 Sum_probs=36.9 Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 332000034544344666444443444333321000676545775410345675323433377765 Q gi|255764461|r 153 QHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGI 218 (511) Q Consensus 153 ~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGi 218 (511) .-+|+.|+.+..+=++=..-++-+++.+.+.| |++.+..+++...|.+|. + |||= T Consensus 139 ~~RP~RF~sp~~FP~~~~tt~~gvK~PiGTGP-W~l~e~K~~EY~~F~RN~---------n-YWGe 193 (513) T TIGR02294 139 MVRPLRFLSPSDFPKKNDTTKDGVKKPIGTGP-WMLKESKQDEYAVFVRNE---------N-YWGE 193 (513) T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCCCCEEECCC---------C-CCCC T ss_conf 24876760602278887887576127658987-312102178755331076---------6-7888 No 200 >PRK13402 gamma-glutamyl kinase; Provisional Probab=34.29 E-value=27 Score=13.89 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=56.2 Q ss_pred CCCCCEEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCCCHHHHH-----------HHHHC Q ss_conf 988881799---7888999988322247897899999999885898036236-43702279999-----------99983 Q gi|255764461|r 1 MKEREKLYI---STAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTT-GTDEHGQKIAK-----------AAQNA 65 (511) Q Consensus 1 m~~~~~~~v---t~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~-g~D~hg~~i~~-----------~A~~~ 65 (511) |+.-||+.| |+-+-..+|.+....+... ++.+++ ++.+|++|..|| |.=.-|..... ++..- T Consensus 2 ~~~~kRIVIKiGSs~lt~~~g~l~~~~i~~l--~~~I~~-L~~~G~evilVSSGAia~G~~~L~~~~rp~l~~kQA~AAv 78 (363) T PRK13402 2 DSPWKRIVVKVGSALITPHKQGCSSHYLLGI--AQFIVY-LRAQGHQVVLVSSGSVAAGYHKLGFIDRPSVPEKKAMAAA 78 (363) T ss_pred CCCCCEEEEEECCCEEECCCCCCCHHHHHHH--HHHHHH-HHHCCCEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 9988669999670106899998789999999--999999-9978998999887879964776099768975788899985 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9998999999999999999980889886747788889999999988875431022 Q gi|255764461|r 66 GVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120 (511) Q Consensus 66 g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy 120 (511) |. -.+...|.+.|--...++=++.|.| .+.+.+.-++..+..|.+.|.|- T Consensus 79 GQ--~~Lm~~Y~~~F~~~~AQiLLT~~D~---~~r~rylN~r~Tl~~Ll~~gvIP 128 (363) T PRK13402 79 GQ--GDMMATWSKLFDFPAAQLLLTHGDL---RDRERYISIRNTINVLLEHGILP 128 (363) T ss_pred HH--HHHHHHHHHHHCCHHHHHHCCHHHH---CCCHHHHHHHHHHHHHHHCCCCC T ss_conf 39--9999999998473576771888786---16478899999999999689422 No 201 >COG1415 Uncharacterized conserved protein [Function unknown] Probab=34.16 E-value=27 Score=13.87 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 67899999999998775035899999999999999 Q gi|255764461|r 390 ILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEV 424 (511) Q Consensus 390 ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~ 424 (511) ++.-+.+++++. -+.+.+...|++.+-++++.+ T Consensus 336 ~I~~l~~~ve~a--~lg~~e~~~~lkrl~e~~~~~ 368 (373) T COG1415 336 LIEFLEELVEKA--RLGRQEKLRALKRLAELSKFP 368 (373) T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH T ss_conf 999999999864--158689999999999865316 No 202 >TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase; InterPro: IPR014074 This entry describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and other carboxysome shell proteins.. Probab=34.03 E-value=24 Score=14.21 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=18.7 Q ss_pred CHHHHHH-HHHHHHHHHHHHHC---CCCEEE Q ss_conf 2224789-78999999998858---980362 Q gi|255764461|r 21 HIGHAYE-MIIADVLARFHRLD---GLDVLF 47 (511) Q Consensus 21 HlGH~~~-~i~~D~~~R~~r~~---G~~v~~ 47 (511) -|||..| -++-|-|.+-+-|+ .++.+| T Consensus 53 ~LG~~LP~~LLedaW~sgLdm~sqkafqaL~ 83 (463) T TIGR02701 53 KLGFKLPEELLEDAWVSGLDMKSQKAFQALY 83 (463) T ss_pred HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 4063315875389876420412568888999 No 203 >TIGR00373 TIGR00373 conserved hypothetical protein TIGR00373; InterPro: IPR005241 This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. . Probab=33.89 E-value=27 Score=13.84 Aligned_cols=107 Identities=11% Similarity=0.086 Sum_probs=59.1 Q ss_pred CCCCCCCHHHHHHHHHCCC-CHHHHHHHHH---HHH-HHHHHHHCCCCCCCCCCCCHH------------------HHHH Q ss_conf 6437022799999998399-9899999999---999-999998088988674778888------------------9999 Q gi|255764461|r 49 TGTDEHGQKIAKAAQNAGV-TTKVFVDQNS---RNF-RDMADVLDISYDDFIRTTEKR------------------HHDT 105 (511) Q Consensus 49 ~g~D~hg~~i~~~A~~~g~-~p~e~~~~~~---~~~-~~~~~~~~i~~D~~~rT~~~~------------------~~~~ 105 (511) .|-|+-|.+|.-.-...|. |-++++.+.. +.+ +-+++.+++..-.|.|.-|++ -++. T Consensus 12 ~eGdEe~~~vl~~L~~kGe~Tdeeis~elg~klN~vRk~Ly~LYdagladYkR~kD~eT~Wy~YtW~~~~eK~~~v~Krk 91 (168) T TIGR00373 12 AEGDEEAIEVLESLLIKGEVTDEEISKELGIKLNVVRKLLYKLYDAGLADYKRRKDDETNWYEYTWKIELEKVLDVVKRK 91 (168) T ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHH T ss_conf 47753213444222026874778888883840557889999873030100021368988852365166702147898788 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHCCCCCC-CCCCHHHHCCCCCCCCCCCCCCCEEC Q ss_conf 9999888754310221100010113343-01556672111222222223320000 Q gi|255764461|r 106 CRILWKKISDKGDIYKGCYSGWYSLRDE-AYYNDDEVYKGADGQYYNAQHNPVQW 159 (511) Q Consensus 106 ~~~~~~~l~~~G~iy~~~~~~~y~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~ 159 (511) ..++.++|.++=-+ +...--+.||.|. +|-.++-.. -+=-|..||+.++. T Consensus 92 ~~e~~kkLreklEf-E~nn~ff~CpN~~vrftf~eAme---~nFtCP~CG~~l~~ 142 (168) T TIGR00373 92 LEELVKKLREKLEF-EKNNMFFVCPNMNVRFTFDEAME---LNFTCPECGAMLDY 142 (168) T ss_pred HHHHHHHHHHHHHH-HCCCEEEEECCCEEEEEHHHHHC---CCCCCCCCCCHHHH T ss_conf 99999999987423-10772587138405740422311---67988331323224 No 204 >PRK11823 DNA repair protein RadA; Provisional Probab=32.76 E-value=29 Score=13.71 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=11.6 Q ss_pred CCCCCCEEECCC-CCCHHHCCCCCCCCHHH Q ss_conf 333430330586-01000002211100000 Q gi|255764461|r 290 VFSHGFILHKGE-KISKSLGNVIDPIEVIE 318 (511) Q Consensus 290 i~~~g~l~~~G~-KMSKS~GN~I~~~e~l~ 318 (511) ++.-||++.||. -==|.+-|.||.-=.++ T Consensus 210 ~~lVGHVTKdG~iAGPkvLEHmVDtVl~fE 239 (454) T PRK11823 210 VFLVGHVTKEGAIAGPRVLEHMVDTVLYFE 239 (454) T ss_pred EEEEEEECCCCCCCCCHHHHHHHCEEEEEC T ss_conf 899997726776466145222010468751 No 205 >TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239 Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function.. Probab=32.42 E-value=29 Score=13.68 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=15.4 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 4443444333321000676545775410345 Q gi|255764461|r 173 QDKLLSYYESHPEFILPIERRNEVISFVKSG 203 (511) Q Consensus 173 ~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~g 203 (511) .+++.+.+.. +.-+...+++..+..++..+ T Consensus 225 ~p~~~~~l~g-k~kiS~~EA~~~~~~~~g~~ 254 (465) T TIGR02889 225 TPKGKEALKG-KEKISKEEAKQIARDFLGDN 254 (465) T ss_pred CCHHHHHHCC-CCHHHHHHHHHHHHHHCCCC T ss_conf 8103443037-75021899999999854745 No 206 >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. Probab=32.27 E-value=29 Score=13.66 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=30.0 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC Q ss_conf 179978889999883222478978999999998858980362364370227999999983999 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT 68 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~ 68 (511) |+++. +.|. -||+.+.+. +++-++.+|++|.|++..+ ....++..|.+ T Consensus 2 ril~~-~~~~------~GH~~P~l~---lA~~L~~rGh~Vt~~~~~~-----~~~~i~~~g~~ 49 (401) T cd03784 2 RVLIT-TIGS------RGDVQPLVA---LAWALRAAGHEVRVATPPE-----FADLVEAAGLE 49 (401) T ss_pred EEEEE-CCCC------HHHHHHHHH---HHHHHHHCCCEEEEEECHH-----HHHHHHHCCCE T ss_conf 79998-7985------758999999---9999998899599993878-----88899977986 No 207 >PRK10949 protease 4; Provisional Probab=32.19 E-value=29 Score=13.65 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHCCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHH Q ss_conf 999999999980889886------------7477-8888999999998887543 Q gi|255764461|r 76 NSRNFRDMADVLDISYDD------------FIRT-TEKRHHDTCRILWKKISDK 116 (511) Q Consensus 76 ~~~~~~~~~~~~~i~~D~------------~~rT-~~~~~~~~~~~~~~~l~~~ 116 (511) +.--+++.++++||.+.. |+|+ .++++++..+.++..|+++ T Consensus 185 ~~~y~K~lLdKlgI~~~vfrvG~YKSAvEpf~r~~MS~e~re~~~~~l~~lw~~ 238 (618) T PRK10949 185 NGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQN 238 (618) T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 177899999974982899981375674651114459999999999999999999 No 208 >pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine. Probab=32.13 E-value=29 Score=13.64 Aligned_cols=17 Identities=0% Similarity=-0.027 Sum_probs=7.1 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 88889999999988875 Q gi|255764461|r 98 TEKRHHDTCRILWKKIS 114 (511) Q Consensus 98 ~~~~~~~~~~~~~~~l~ 114 (511) +.|.--..++.|.+.+. T Consensus 27 sGpNtl~~vs~ii~~i~ 43 (331) T pfam03492 27 SGPNTFLAVSNIIDTVE 43 (331) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 97528999999999999 No 209 >KOG4284 consensus Probab=31.78 E-value=30 Score=13.60 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=20.6 Q ss_pred CHHHHH---HHHHH----------HHHHHHHHHCCCCEEECCCC Q ss_conf 222478---97899----------99999988589803623643 Q gi|255764461|r 21 HIGHAY---EMIIA----------DVLARFHRLDGLDVLFTTGT 51 (511) Q Consensus 21 HlGH~~---~~i~~----------D~~~R~~r~~G~~v~~~~g~ 51 (511) ||||+. +|.+| |-++-+++.+|.+|.+++|. T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISga 305 (980) T KOG4284 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGA 305 (980) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 99999860726777765413421047887751169871774141 No 210 >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. Probab=31.64 E-value=30 Score=13.59 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=28.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 179978889999883222478978999999998858980362364370 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDE 53 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~ 53 (511) ||.+-|...|| |+|=+..++ --+++.+..+|++|..+|..+. T Consensus 1 kIaivt~~y~P----~~GG~~~~~--~~La~~L~~~GheV~Vit~~~~ 42 (374) T cd03817 1 KIGIFTDTYLP----QVNGVATSI--RRLAEELEKRGHEVYVVAPSYP 42 (374) T ss_pred CEEEECCCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECCCC T ss_conf 98999589899----998099999--9999999977998999972798 No 211 >cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time. Probab=31.55 E-value=30 Score=13.58 Aligned_cols=57 Identities=25% Similarity=0.173 Sum_probs=38.1 Q ss_pred CCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCC Q ss_conf 88899998832224789789--999999988589803623--6437022799999998399 Q gi|255764461|r 11 TAIAYPNAQPHIGHAYEMII--ADVLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGV 67 (511) Q Consensus 11 ~~~Py~ng~lHlGH~~~~i~--~D~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~ 67 (511) .-+|.+++..|.++...+.. +=-.++.+...|.+|.++ .|.|++|-.+....++.|+ T Consensus 17 ~~~P~~g~~~~a~~~~~~~GG~a~N~A~~la~LG~~~~~i~~vG~D~~G~~~~~~l~~~gv 77 (265) T cd01947 17 DAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELESGGD 77 (265) T ss_pred CCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCC T ss_conf 8889999889852678922878999999999879975799732487289999999986899 No 212 >TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235 Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production.. Probab=31.47 E-value=15 Score=15.69 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999980889886747788889999999988875431022 Q gi|255764461|r 74 DQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120 (511) Q Consensus 74 ~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy 120 (511) +=|+.++.+.|+.=.+.-..|+..+ |.+..-++.+||.+.|||. T Consensus 49 nGYT~kILDVLKe~~V~AaFFVTgh---Y~K~~pdLvKRM~~EGHiv 92 (225) T TIGR02884 49 NGYTPKILDVLKENKVPAAFFVTGH---YIKTQPDLVKRMVDEGHIV 92 (225) T ss_pred CCCCHHHHHHHHCCCCCEEEEEECC---CCCCCHHHHHHHHHCCCEE T ss_conf 5770334233203788311464077---3147667666555458343 No 213 >TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm. Probab=31.20 E-value=30 Score=13.54 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=22.7 Q ss_pred HHHCCCCCCCC--CCHHHHCCCCC--CCCCCCCC--CCEE Q ss_conf 01011334301--55667211122--22222233--2000 Q gi|255764461|r 125 SGWYSLRDEAY--YNDDEVYKGAD--GQYYNAQH--NPVQ 158 (511) Q Consensus 125 ~~~y~~~~~~~--~~~~~v~~~~~--~~~~~~~~--~p~~ 158 (511) |=|-||.|+.| ..|..+..|=| .+-|..|| +|.. T Consensus 716 PHY~Cp~Cky~Ef~~D~~~~~GfDLp~K~CP~Cgak~pl~ 755 (1264) T TIGR01405 716 PHYLCPNCKYSEFVTDGSVGSGFDLPDKDCPKCGAKAPLK 755 (1264) T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8750878735530037877887768578888888777634 No 214 >TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane. Probab=30.83 E-value=31 Score=13.49 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=13.3 Q ss_pred CHHHHCCCCCCCHHHEEECCCCCCCEE Q ss_conf 000002211121110000247873011 Q gi|255764461|r 315 EVIEEVGVDALRYFLVREIACGKDGFY 341 (511) Q Consensus 315 e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511) +.-.+.+++.||-. +.+.-...++-| T Consensus 467 ~~~~~Ma~~GLRv~-A~A~~~~~~L~F 492 (856) T TIGR01522 467 EEAAEMASEGLRVI-AFASGTEKDLVF 492 (856) T ss_pred HHHHHHHCCCCEEE-EEEECCCCCCEE T ss_conf 98763200666466-565225687157 No 215 >PRK04527 argininosuccinate synthase; Provisional Probab=30.74 E-value=31 Score=13.48 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=44.5 Q ss_pred HHHHHHHHHHCCCCEEECC---C--CCCCCHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHH Q ss_conf 9999999885898036236---4--3702279999999839998---99999999999999998088988-674778888 Q gi|255764461|r 31 ADVLARFHRLDGLDVLFTT---G--TDEHGQKIAKAAQNAGVTT---KVFVDQNSRNFRDMADVLDISYD-DFIRTTEKR 101 (511) Q Consensus 31 ~D~~~R~~r~~G~~v~~~~---g--~D~hg~~i~~~A~~~g~~p---~e~~~~~~~~~~~~~~~~~i~~D-~~~rT~~~~ 101 (511) .-++..|++-+|++|.=++ | .|+--..++.+|.+.|.+- .+.-+++.+.+..-+-+.|..|- .|.-.++ . T Consensus 16 TSv~l~wL~e~g~~Vi~~~ad~G~~~~e~~~~i~~kA~~~GA~~~~v~D~~~ef~~~~v~~~i~ana~Yeg~YpL~ts-a 94 (397) T PRK04527 16 TSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVS-D 94 (397) T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCHHHCCCCCCCCC-H T ss_conf 999999998759947999997899861515789999998199779997289999999999998606454185556321-0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999988875431 Q gi|255764461|r 102 HHDTCRILWKKISDKG 117 (511) Q Consensus 102 ~~~~~~~~~~~l~~~G 117 (511) ..-+++.+.+...+.| T Consensus 95 RplIak~~ve~A~~~g 110 (397) T PRK04527 95 RYLIVDAALKRAEELG 110 (397) T ss_pred HHHHHHHHHHHHHHCC T ss_conf 7999999999999729 No 216 >TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337 Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.. Probab=30.74 E-value=29 Score=13.66 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=20.0 Q ss_pred CCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCC Q ss_conf 00676545775410345675--323433377765786422214 Q gi|255764461|r 187 ILPIERRNEVISFVKSGLKD--LSLSRKTFDWGIKIPDDPQYI 227 (511) Q Consensus 187 ~~p~~~~~~~~~wl~~gl~D--w~ISR~~~~WGipiP~~~~~~ 227 (511) ..|+-.+..+.++ |++| |.|| .||.=|||=.-.+ T Consensus 58 ~~PdvA~aifK~l---Gi~dVn~~~t----e~G~lIPGL~AgR 93 (285) T TIGR02995 58 AAPDVARAIFKRL---GIKDVNASVT----EYGALIPGLKAGR 93 (285) T ss_pred CCHHHHHHHHHHC---CCEEEEEEEC----CCCCCCCCCCCCH T ss_conf 8557899999854---8110000035----6403145410102 No 217 >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. Probab=30.70 E-value=31 Score=13.48 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.3 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 17997888999988322247897899999999885898036236437 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ||.+.|| | ++..|=+..|+ --+++.+..+|++|..++-.+ T Consensus 1 kI~~i~~--y---pP~~GGi~~~~--~~La~~L~~~Gh~V~v~~~~~ 40 (366) T cd03822 1 RIALVSP--Y---PPRKCGIATFT--TDLVNALSARGPDVLVVSVAA 40 (366) T ss_pred CEEEEEC--C---CCCCCCHHHHH--HHHHHHHHHCCCEEEEEECCC T ss_conf 9899918--9---99998389999--999999986799899995888 No 218 >KOG0572 consensus Probab=30.62 E-value=31 Score=13.47 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=47.5 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHH----HHHHHH Q ss_conf 8881799788899998832224789789999999988589803623643702279999999839998999----999999 Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVF----VDQNSR 78 (511) Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~----~~~~~~ 78 (511) +-+.|+|-| || |.|-++|-++.+-+--+.|++-..|. .+.|++|. ++-+.-.-.+|+.. ...... T Consensus 87 n~QPFvv~t--~~--G~lavAHNGnLVN~~~Lrr~l~~~g~--~l~T~SDS-----Elil~~~a~~~~~~~~~~~~d~~~ 155 (474) T KOG0572 87 NVQPFVVNT--PH--GSLAVAHNGNLVNYKSLRRELLEEGV--GLNTSSDS-----ELILQLIAYAPEDVYRVDAPDWFA 155 (474) T ss_pred CCCCEEEEC--CC--CEEEEECCCCCCCHHHHHHHHHHCCC--CCCCCCCH-----HHHHHHHHHCHHHHHCCCCCCHHH T ss_conf 556558724--77--22787306732366999999986075--01468828-----999999973657662244763899 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999998088988 Q gi|255764461|r 79 NFRDMADVLDISYD 92 (511) Q Consensus 79 ~~~~~~~~~~i~~D 92 (511) .+...+++++-+|. T Consensus 156 ri~~~~~~~~g~Ys 169 (474) T KOG0572 156 RIRDVMELLPGAYS 169 (474) T ss_pred HHHHHHHHCCCCEE T ss_conf 99999986677526 No 219 >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Probab=30.47 E-value=31 Score=13.45 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=29.1 Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCH Q ss_conf 999999988589803623643702279999999839998 Q gi|255764461|r 31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTT 69 (511) Q Consensus 31 ~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p 69 (511) .--+|+.++.+||+| +|+|-.-++...+.+++|+.+ T Consensus 20 MsglA~iL~~~G~~V---sGSD~~~~~~t~~L~~~G~~i 55 (459) T COG0773 20 MSGLAEILLNLGYKV---SGSDLAESPMTQRLEALGIEI 55 (459) T ss_pred HHHHHHHHHHCCCCE---ECCCCCCCHHHHHHHHCCCEE T ss_conf 799999999679911---771665267789999789968 No 220 >PRK10872 relA GDP/GTP pyrophosphokinase; Provisional Probab=30.07 E-value=31 Score=13.40 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=13.6 Q ss_pred CHHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 95565667-----89999999999877503589999 Q gi|255764461|r 384 TESDESIL-----SVCSRVLQEIRENMQNQLIHRAL 414 (511) Q Consensus 384 ~~~D~~ll-----~~l~~~~~~v~~a~e~~~~~~Al 414 (511) .+.-.|+- -...++-.++...+.+.+-.+.+ T Consensus 470 ~Ps~dWLn~~lgfV~TskARskIr~~~k~~~re~~i 505 (743) T PRK10872 470 NPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNI 505 (743) T ss_pred CCCHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHH T ss_conf 969579456567576667799999999874599999 No 221 >PRK10132 hypothetical protein; Provisional Probab=29.96 E-value=32 Score=13.39 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=32.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 95565667899999999998775035899999999999999788654187012 Q gi|255764461|r 384 TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWEL 436 (511) Q Consensus 384 ~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l 436 (511) .+.-..+.++..+..++...-+..- ....+..-+.+..++.|+.+ +||.- T Consensus 40 k~e~~~lR~kAe~~LketR~rL~~~--~~v~~~ar~aa~~AD~YVre-nPW~s 89 (108) T PRK10132 40 KGEAEAARRKAQALLKETRARMHGR--TRVQQAARDAVGCADTFVRE-RPWCS 89 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHC-CCCHH T ss_conf 7899999999999999999987454--69999999999868888864-89504 No 222 >TIGR02015 BchY chlorophyllide reductase subunit Y; InterPro: IPR010245 This entry represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.; GO: 0016731 oxidoreductase activity acting on iron-sulfur proteins as donors NAD or NADP as acceptor, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process, 0016021 integral to membrane. Probab=29.87 E-value=32 Score=13.38 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=14.9 Q ss_pred CCCCHHHHHHHHHH------HHHHHHHHHHHHHCCHHHH Q ss_conf 55895565667899------9999999987750358999 Q gi|255764461|r 381 GAFTESDESILSVC------SRVLQEIRENMQNQLIHRA 413 (511) Q Consensus 381 ~~~~~~D~~ll~~l------~~~~~~v~~a~e~~~~~~A 413 (511) ..++..|+.+++.. ...+++=.++++.|+..-+ T Consensus 325 T~~~~~D~~~L~~~G~~VkyR~~LE~D~~Av~~f~PDL~ 363 (426) T TIGR02015 325 TAWGAEDKEWLEALGVEVKYRASLEDDMEAVEEFEPDLA 363 (426) T ss_pred CCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCEE T ss_conf 754266799998479558860223678999961699757 No 223 >PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional Probab=29.82 E-value=32 Score=13.37 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=8.6 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 88875431022110 Q gi|255764461|r 110 WKKISDKGDIYKGC 123 (511) Q Consensus 110 ~~~l~~~G~iy~~~ 123 (511) +.+..++|.||--+ T Consensus 96 ~~~~~~~GdihiHD 109 (625) T PRK08271 96 YLRQIENGEIYVHD 109 (625) T ss_pred HHHHHHCCCEEEEC T ss_conf 99998748858713 No 224 >pfam08673 RsbU_N Phosphoserine phosphatase RsbU, N-terminal domain. RsbU is a phosphoserine phosphatase which acts as a positive regulator of the general stress-response factor of gram positive organisms, sigma-B. The phosphatase activity of RsbU is stimulated by association with the RsbT kinase. Deletions in the N terminal domain are deleterious to the activity of RsbU. Probab=29.43 E-value=32 Score=13.33 Aligned_cols=45 Identities=9% Similarity=0.198 Sum_probs=31.4 Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 999999988589803623643702279999999839998999999999999 Q gi|255764461|r 31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR 81 (511) Q Consensus 31 ~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~ 81 (511) .+++.+|+.-+....+|. +.+...++.+.+++|+|+++--...+. T Consensus 5 k~iL~~yL~~~~E~~Ly~------~q~fsr~~iek~IsPEeIV~iH~~~l~ 49 (77) T pfam08673 5 KRLLDEYLASQDEQSLYK------CEKFSRELIEKDISPEEIVSIHKSVLE 49 (77) T ss_pred HHHHHHHHHCCCHHHHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999880876999999------999889999807999999999999999 No 225 >COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis] Probab=29.03 E-value=33 Score=13.28 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=19.2 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 980889886747788889999999988875431022 Q gi|255764461|r 85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120 (511) Q Consensus 85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy 120 (511) +.+||..|.=-||..|++-+.-.+..+.+.+++.++ T Consensus 77 R~LGI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~ 112 (113) T COG4352 77 RTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVF 112 (113) T ss_pred HHHCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 760861000102478889999999999998458668 No 226 >KOG2623 consensus Probab=28.83 E-value=33 Score=13.26 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.5 Q ss_pred CEE-ECCCCCCHHHCCCCCCCCH Q ss_conf 033-0586010000022111000 Q gi|255764461|r 295 FIL-HKGEKISKSLGNVIDPIEV 316 (511) Q Consensus 295 ~l~-~~G~KMSKS~GN~I~~~e~ 316 (511) .++ ..|+|+-||-||+||.+-- T Consensus 265 LlTsstG~KlGKSaGnAvWLdp~ 287 (467) T KOG2623 265 LLTSSTGAKLGKSAGNAVWLDPS 287 (467) T ss_pred EEECCCCHHHCCCCCCEEEECCC T ss_conf 57657511323477862884676 No 227 >COG4889 Predicted helicase [General function prediction only] Probab=28.70 E-value=33 Score=13.24 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=37.3 Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 999988589803623643702279999999839998999--99999999999998088988674778888999999998 Q gi|255764461|r 34 LARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVF--VDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILW 110 (511) Q Consensus 34 ~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~--~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~ 110 (511) +..++|..|.-|.|.|-- .+|...+|+++|..+-++ |++-|..--.++. +=+-..|+|.|+..+.+..++++ T Consensus 272 ~~~~~k~~~~~vvFsTYQ---Sl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a--~dd~saFt~vHs~~niKa~kRlY 345 (1518) T COG4889 272 MEHRQKANGLTVVFSTYQ---SLPRIKEAQEAGLDEFDLIICDEAHRTTGATLA--GDDKSAFTRVHSDQNIKAAKRLY 345 (1518) T ss_pred HHHHHCCCCCEEEEECCC---CHHHHHHHHHCCCCCCCEEEECCHHCCCCCEEC--CCCCCCCEEECCCCCHHHHHHHH T ss_conf 987533378389997021---148789999749997537974400014462322--57720104533764158887666 No 228 >COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Probab=28.69 E-value=33 Score=13.24 Aligned_cols=11 Identities=18% Similarity=0.325 Sum_probs=6.2 Q ss_pred CCCHHHHHHHH Q ss_conf 43224899999 Q gi|255764461|r 463 QAFVPKLANKI 473 (511) Q Consensus 463 ~Pi~P~~ae~i 473 (511) .|+.|+.+..+ T Consensus 727 ~~~~p~~~~ql 737 (917) T COG0474 727 LFFLPLTPLQL 737 (917) T ss_pred CCCCCCCHHHH T ss_conf 57777578999 No 229 >COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis] Probab=28.63 E-value=17 Score=15.30 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=23.4 Q ss_pred HHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE Q ss_conf 543102211000101133430155667211122222222332000 Q gi|255764461|r 114 SDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQ 158 (511) Q Consensus 114 ~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~ 158 (511) .+++-.+.+..+.|||.+|.--+..+ .|..||+.++ T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~~---------~c~~cg~~~~ 37 (202) T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLGR---------RCSVCGSKVE 37 (202) T ss_pred CCCCCEEECCCCEEEHHHCCCCCCCC---------CCCCCCCCCE T ss_conf 75553030543064132288743555---------2456677600 No 230 >pfam11243 DUF3045 Protein of unknown function (DUF3045). Members in this family of proteins are annotated as gene protein 30.1. Currently no function is known. Probab=28.24 E-value=34 Score=13.19 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=18.3 Q ss_pred CCHHHH-HHHHHHHHHHHHHHCCCCCCH Q ss_conf 888899-999999888754310221100 Q gi|255764461|r 98 TEKRHH-DTCRILWKKISDKGDIYKGCY 124 (511) Q Consensus 98 ~~~~~~-~~~~~~~~~l~~~G~iy~~~~ 124 (511) ..|++. ..-.+||+++.++|.||..++ T Consensus 27 ~nP~fr~~KD~~IFk~CVeqGFiYvse~ 54 (90) T pfam11243 27 CNPEFRAQKDAEIFKECVEQGFIYISEH 54 (90) T ss_pred CCHHHHHHCHHHHHHHHHHCCEEEEEHH T ss_conf 4889886231899999997053886576 No 231 >TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane. Probab=28.20 E-value=34 Score=13.18 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=6.2 Q ss_pred CCCCHHHHHH Q ss_conf 6460244432 Q gi|255764461|r 228 MYVWIDALTN 237 (511) Q Consensus 228 ~YVWfDa~~g 237 (511) |-+|+.|++- T Consensus 205 f~~W~~Al~~ 214 (545) T TIGR01511 205 FVIWLFALET 214 (545) T ss_pred HHHHHHHHHH T ss_conf 9999999987 No 232 >TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesisATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate. Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm. Probab=27.76 E-value=34 Score=13.13 Aligned_cols=103 Identities=11% Similarity=0.202 Sum_probs=62.6 Q ss_pred ECCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC--HHHHHHHH--------- Q ss_conf 7888999988--3222478978999999998858980362364370227999999983999--89999999--------- Q gi|255764461|r 10 STAIAYPNAQ--PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT--TKVFVDQN--------- 76 (511) Q Consensus 10 t~~~Py~ng~--lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~--p~e~~~~~--------- 76 (511) |+-+-.+.|. |+.+|+..-+- .|- -++..|++|..||-= +|..-...+|.+ |++++.+= T Consensus 9 sS~Lt~~~g~h~l~~~~i~~lv~-~v~--~L~~~Gh~vviVSSG-----A~AaG~~~LG~~~rP~~la~KQAlAAVGQ~~ 80 (379) T TIGR01027 9 SSSLTGSSGSHELDRSRIAELVE-QVA--ALHAAGHEVVIVSSG-----AVAAGFEALGLPERPKTLAEKQALAAVGQVR 80 (379) T ss_pred CCEEECCCCCCEECHHHHHHHHH-HHH--HHHHCCCEEEEEECC-----HHHHHHHHCCCCCCCCCHHHHHHHHHCCHHH T ss_conf 32111788874137799999999-999--998659989998167-----5886234455699986256788787314568 Q ss_pred -HHHHHHHHHHHCCCCCC--CCCC--CCHH--HHHHHHHHHHHHHHHHCCC Q ss_conf -99999999980889886--7477--8888--9999999988875431022 Q gi|255764461|r 77 -SRNFRDMADVLDISYDD--FIRT--TEKR--HHDTCRILWKKISDKGDIY 120 (511) Q Consensus 77 -~~~~~~~~~~~~i~~D~--~~rT--~~~~--~~~~~~~~~~~l~~~G~iy 120 (511) .+.+...|..+|+..=. -+|- .+-+ -+.=.+.-+.+|.+.|.|- T Consensus 81 Lm~~y~~~F~~Yg~~~aQiLLTr~D~~~R~eeRy~NAr~TL~~Ll~~gvvP 131 (379) T TIGR01027 81 LMQLYENLFSSYGLKVAQILLTRADFSKREEERYLNARNTLEALLELGVVP 131 (379) T ss_pred HHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 999999999754882224340579886337899999999999998659478 No 233 >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated Probab=27.65 E-value=34 Score=13.11 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=13.3 Q ss_pred CCCCCHHHHCCCCCCCHH Q ss_conf 111000000221112111 Q gi|255764461|r 311 IDPIEVIEEVGVDALRYF 328 (511) Q Consensus 311 I~~~e~l~~~g~D~lR~~ 328 (511) |-.+|++.+=-.+--|+| T Consensus 411 VlIDDLvtkGv~EPYRMF 428 (621) T PRK05192 411 VLIDDLVTKGTKEPYRMF 428 (621) T ss_pred HHHHHHHHCCCCCCCCCC T ss_conf 415667607999641033 No 234 >KOG2384 consensus Probab=27.10 E-value=35 Score=13.05 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=18.1 Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHCCC Q ss_conf 898036236437022799999998399 Q gi|255764461|r 41 DGLDVLFTTGTDEHGQKIAKAAQNAGV 67 (511) Q Consensus 41 ~G~~v~~~~g~D~hg~~i~~~A~~~g~ 67 (511) .|.-|.+|--+|.||.-+..-|++.|. T Consensus 32 lgrg~a~vgv~d~ssldaaqlaek~g~ 58 (223) T KOG2384 32 LGRGVAFVGVTDESSLDAAQLAEKGGA 58 (223) T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHCCH T ss_conf 616755444334445308999986270 No 235 >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] Probab=27.04 E-value=35 Score=13.04 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=26.6 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 8817997888999988322247897899999999885898036236437 Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ++|+++-.. |. .||+.+.+. ++|-++.+||+|.|.|.-+ T Consensus 1 ~mkil~~~~-----~~--~Ghv~p~~a---L~~eL~~~gheV~~~~~~~ 39 (406) T COG1819 1 RMKILFVVC-----GA--YGHVNPCLA---LGKELRRRGHEVVFASTGK 39 (406) T ss_pred CCEEEEEEC-----CC--CCCHHHHHH---HHHHHHHCCCEEEEEECHH T ss_conf 957999817-----76--432266699---9999997697499973778 No 236 >KOG0780 consensus Probab=26.77 E-value=36 Score=13.00 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=16.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999998399989999999999999999808 Q gi|255764461|r 58 IAKAAQNAGVTTKVFVDQNSRNFRDMADVLD 88 (511) Q Consensus 58 i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~ 88 (511) |..+-.+..++|. ++.+..+.+++....-+ T Consensus 35 I~~ALLesDV~~~-lV~~l~~nir~~i~~~~ 64 (483) T KOG0780 35 ICRALLESDVNPR-LVKELRENIRKIINLEK 64 (483) T ss_pred HHHHHHHCCCCHH-HHHHHHHHHHHHHCHHH T ss_conf 9999985258888-99999999998746242 No 237 >cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear. Probab=26.63 E-value=12 Score=16.55 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=33.4 Q ss_pred CCCCCCCCCCEEEC-CCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCE--ECCCCCCC Q ss_conf 12323334303305-86010000022111000000221112111000024787301--11222111 Q gi|255764461|r 286 LPKKVFSHGFILHK-GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGF--YDKDGLKK 348 (511) Q Consensus 286 ~p~~i~~~g~l~~~-G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~--Fs~~~~~~ 348 (511) ++..-++|||+++- ..+|+.+.--+-...-.+ .||.|-+||- +-.+.++.+. ++..++.. T Consensus 53 pfg~tIAHGfltLSl~~~~~~~~~~~~~~~~~v-NYG~dkvRF~--~PV~vGs~vR~~~~l~~v~~ 115 (149) T cd03450 53 PFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGV-NYGLDKVRFP--APVPVGSRVRGRFTLLSVEE 115 (149) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE-ECCCCCEEEC--CCCCCCCEEEEEEEEEEEEE T ss_conf 888734650669999998875266767843333-0033526706--87567999999999999899 No 238 >pfam09176 Mpt_N Methylene-tetrahydromethanopterin dehydrogenase, N-terminal. Members of this family adopt a alpha-beta structure, with a core comprising three alpha/beta/alpha layers, in which each sheet contains four strands. They are predominantly found in prokaryotic methylene-tetrahydromethanopterin dehydrogenase, which catalyses the dehydrogenation of methylene-tetrahydromethanopterin and the reversible dehydrogenation of methylene-H(4)F. Probab=26.33 E-value=22 Score=14.55 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=20.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC Q ss_conf 99998832224789789999999988589803623643702 Q gi|255764461|r 14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH 54 (511) Q Consensus 14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h 54 (511) || |..-+....+.++.-|+.|--+-.-...+|+.|.|.+ T Consensus 17 ~y--~~V~~~~V~~LVqdaIFsR~p~~~~~TaIFiGG~d~~ 55 (81) T pfam09176 17 PY--GNVTPEEVTGLVQDAIFSRGPKDLKRTAIFIGGRDMA 55 (81) T ss_pred CC--CCCCHHHHHHHHCCEEECCCCCCCCEEEEEECCCCHH T ss_conf 33--7717889442214636714876772068998886599 No 239 >TIGR02967 guan_deamin guanine deaminase; InterPro: IPR014311 This entry describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as more distantly related homologs which are not included in this entry. . Probab=26.18 E-value=28 Score=13.80 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=14.8 Q ss_pred HHHHHHHHHCC-CC-CCCCCCCCCCC Q ss_conf 65457754103-45-67532343337 Q gi|255764461|r 191 ERRNEVISFVK-SG-LKDLSLSRKTF 214 (511) Q Consensus 191 ~~~~~~~~wl~-~g-l~Dw~ISR~~~ 214 (511) +.+.-+.+|.. .| +-...|| +|+ T Consensus 167 ~s~~LI~~WhgLkGnR~~YavT-PRF 191 (426) T TIGR02967 167 ESKALIERWHGLKGNRLLYAVT-PRF 191 (426) T ss_pred HHHHHHHHHHHHCCCCCCCEEC-CCC T ss_conf 9999999987420563673354-667 No 240 >cd01095 Nitrilotriacetate_monoxgenase nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2. Probab=26.08 E-value=37 Score=12.92 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=9.8 Q ss_pred CHHHHHHH--HHHHCCCCCCCCCC Q ss_conf 06765457--75410345675323 Q gi|255764461|r 188 LPIERRNE--VISFVKSGLKDLSL 209 (511) Q Consensus 188 ~p~~~~~~--~~~wl~~gl~Dw~I 209 (511) .|-...++ .++.+++|.--|.| T Consensus 95 ~P~~~AR~~aTLDhiS~GR~gwNi 118 (358) T cd01095 95 EPYHLARRFASLDHISGGRAGWNV 118 (358) T ss_pred CHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 889999999767774388248998 No 241 >TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691). Probab=26.04 E-value=37 Score=12.91 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=12.9 Q ss_pred CCCHHHCCCCCCCC----HHHHCCCCCCC Q ss_conf 01000002211100----00002211121 Q gi|255764461|r 302 KISKSLGNVIDPIE----VIEEVGVDALR 326 (511) Q Consensus 302 KMSKS~GN~I~~~e----~l~~~g~D~lR 326 (511) -|+-|..+.|...- +..-.|+|.+- T Consensus 270 a~~r~~~~Gis~~~~l~Kl~RLaGaD~~~ 298 (407) T TIGR03332 270 AYTSSPFYGVSHSLLLGKLLRYAGADFSL 298 (407) T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCEEE T ss_conf 66327777742999999999981989776 No 242 >TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1; InterPro: IPR004403 These proteins are translation factors that have been characterised in eukaryotes as the non-GTP-binding subunit of a cytosolic heterodimer that acts as a translation release factor for all three stop codons. Members of this orthologous family are found in Eukarya and Archaea. The name used should be eRF1 for the Archaea and aRF1 for the Eukarya. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm. Probab=26.00 E-value=30 Score=13.59 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=9.6 Q ss_pred CCEEECCC--CCCHHHCCCCCCCC Q ss_conf 30330586--01000002211100 Q gi|255764461|r 294 GFILHKGE--KISKSLGNVIDPIE 315 (511) Q Consensus 294 g~l~~~G~--KMSKS~GN~I~~~e 315 (511) |++.+||+ -+..=+||-|+..+ T Consensus 145 GlivlDr~eat~g~vkG~~i~vL~ 168 (425) T TIGR00108 145 GLIVLDRKEATIGLVKGKRIEVLK 168 (425) T ss_pred CEEEECCCCEEEEEEECCCEEECH T ss_conf 258980886079886077012231 No 243 >COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification] Probab=25.86 E-value=37 Score=12.89 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=10.4 Q ss_pred CCCCCCHHHCCCCCCCCHHHHCCCCCCC Q ss_conf 5860100000221110000002211121 Q gi|255764461|r 299 KGEKISKSLGNVIDPIEVIEEVGVDALR 326 (511) Q Consensus 299 ~G~KMSKS~GN~I~~~e~l~~~g~D~lR 326 (511) .|-|||= |-- |..-.++|-+|+=| T Consensus 48 ~nTk~sl--GkC--p~~H~~k~K~~YeR 71 (258) T COG5200 48 RNTKRSL--GKC--PTSHEEKYKAEYER 71 (258) T ss_pred HCCCCCC--CCC--CCHHHHHHHHHHHH T ss_conf 3250124--789--61468898889865 No 244 >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Probab=25.61 E-value=37 Score=12.86 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=9.0 Q ss_pred HHHHHHHCCCCCCC Q ss_conf 99999984988000 Q gi|255764461|r 470 ANKIFDILFVADEN 483 (511) Q Consensus 470 ae~i~~~Lg~~~~~ 483 (511) .+++.+.||+++++ T Consensus 360 ~~~~r~~LgL~~~S 373 (396) T TIGR03528 360 YKELREKLQLDENS 373 (396) T ss_pred HHHHHHHCCCCCCC T ss_conf 59999976989998 No 245 >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. Probab=25.59 E-value=37 Score=12.86 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=27.9 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 17997888999988322247897899999999885898036236437 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) |+++.++-.+| +.|=+-.++ --+++.+..+|++|..+|..+ T Consensus 1 KIl~i~~~~~P----~~GG~e~~~--~~la~~L~~~Gh~V~v~t~~~ 41 (375) T cd03821 1 KILHVIPSFDP----KYGGPVRVV--LNLSKALAKLGHEVTVATTDA 41 (375) T ss_pred CEEEEECCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECCC T ss_conf 98999598899----999899999--999999997799899997079 No 246 >PRK12446 N-acetylglucosaminyl transferase; Reviewed Probab=25.35 E-value=38 Score=12.83 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=25.6 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 817997888999988322247897899999999885898036236437 Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ||+++++. -+ =||..|-+ .+++.++.+|++|.|++... T Consensus 2 kkIii~~G---GT----GGHi~Pal---ala~~L~~~~~~v~~ig~~~ 39 (352) T PRK12446 2 KKIVFTGG---GS----AGHVTPNL---AIIPKLIEDNWDISYIGSHQ 39 (352) T ss_pred CEEEEEEC---CC----HHHHHHHH---HHHHHHHHCCCEEEEEECCC T ss_conf 87999958---75----88899999---99999984899599998896 No 247 >TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981 This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde.. Probab=25.23 E-value=28 Score=13.81 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=28.6 Q ss_pred HCC-CCCCCCCCEE--E--CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCC Q ss_conf 012-3233343033--0--586010000022111000000221112111000024787301112221110 Q gi|255764461|r 285 PLP-KKVFSHGFIL--H--KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKR 349 (511) Q Consensus 285 ~~p-~~i~~~g~l~--~--~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~ 349 (511) .-| ++=++|+|.+ . ||.. ||-|..|.++. ...-...+.+|+++..+| T Consensus 244 RGPGRHG~SNAffLYlrDPDghR--------------IElYt~DY~t~----D~Dk~~Pi~W~~~d~~~R 295 (312) T TIGR02295 244 RGPGRHGVSNAFFLYLRDPDGHR--------------IELYTGDYLTG----DPDKLPPIRWTLDDPRQR 295 (312) T ss_pred CCCCCCCCCCCEEEEEECCCCCE--------------EEEECCCCEEE----CCCCCCCEEECCCCCHHC T ss_conf 07787652220043334689978--------------99982882254----278898746234421000 No 248 >pfam00998 RdRP_3 Viral RNA dependent RNA polymerase. This family includes viral RNA dependent RNA polymerase enzymes from hepatitis C virus and various plant viruses. Probab=25.18 E-value=38 Score=12.80 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=12.2 Q ss_pred ECCCCCC----HHHCCCCCCCC Q ss_conf 0586010----00002211100 Q gi|255764461|r 298 HKGEKIS----KSLGNVIDPIE 315 (511) Q Consensus 298 ~~G~KMS----KS~GN~I~~~e 315 (511) .+|-.|| +|+||.+..-- T Consensus 263 ~rgcR~SGd~~TS~GN~l~~~~ 284 (485) T pfam00998 263 VRGCRMSGDMNTSLGNCLLMCL 284 (485) T ss_pred CCCCCCCCCCCCCHHHHHHHHH T ss_conf 6872677875630458999999 No 249 >TIGR02058 lin0512_fam conserved hypothetical protein; InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.. Probab=25.01 E-value=33 Score=13.24 Aligned_cols=16 Identities=56% Similarity=0.858 Sum_probs=7.1 Q ss_pred CCCCCCCHHHHHHHHH Q ss_conf 6437022799999998 Q gi|255764461|r 49 TGTDEHGQKIAKAAQN 64 (511) Q Consensus 49 ~g~D~hg~~i~~~A~~ 64 (511) .|-|.||.-|..+|.+ T Consensus 9 ~G~D~HGQ~~T~AA~r 24 (120) T TIGR02058 9 MGVDQHGQNITKAAAR 24 (120) T ss_pred CCEEECCCCHHHHHHH T ss_conf 6244358886789999 No 250 >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Probab=24.98 E-value=38 Score=12.78 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=42.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHCCC Q ss_conf 883222478978999999998858980362364370227999999983999899---9999999999999980889 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKV---FVDQNSRNFRDMADVLDIS 90 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e---~~~~~~~~~~~~~~~~~i~ 90 (511) |++-||- +.++--+.+|+-... .|+||||-.. ..-|.++|+++|++-.. +++-+.+.+.+.++...-+ T Consensus 100 GdPGIGK--STLLLQva~~lA~~~--~vLYVsGEES-~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456) T COG1066 100 GDPGIGK--STLLLQVAARLAKRG--KVLYVSGEES-LQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456) T ss_pred CCCCCCH--HHHHHHHHHHHHHCC--CEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHCCCC T ss_conf 6898779--899999999987059--5799967767-899999999828996455774112899999999854997 No 251 >TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. Probab=24.85 E-value=30 Score=13.51 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.4 Q ss_pred CHHHHHHHH--HHHCCCC Q ss_conf 067654577--5410345 Q gi|255764461|r 188 LPIERRNEV--ISFVKSG 203 (511) Q Consensus 188 ~p~~~~~~~--~~wl~~g 203 (511) .|-...+++ ++.+++| T Consensus 93 ~P~~~Ar~~aTlD~iS~G 110 (355) T TIGR03612 93 PPAIVARMASTIDSISNG 110 (355) T ss_pred CHHHHHHHHHHHHHHCCC T ss_conf 989999999978876098 No 252 >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. Probab=24.85 E-value=38 Score=12.76 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=29.0 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC Q ss_conf 1799788899998832224789789999999988589803623643702 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH 54 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h 54 (511) ||++.++-.+ ++.|=+..++ --++|.+..+|++|..+|+...+ T Consensus 1 KIlii~~~fp----P~~gG~~~~~--~~la~~L~~~Gh~V~v~t~~~~~ 43 (394) T cd03794 1 KILILSQYFP----PELGGGAFRT--TELAEELVKRGHEVTVITGSPNY 43 (394) T ss_pred CEEEECCCCC----CCCCCHHHHH--HHHHHHHHHCCCEEEEEECCCCC T ss_conf 9899917778----9898299999--99999999779979999547877 No 253 >pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. Probab=24.63 E-value=35 Score=13.03 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=22.5 Q ss_pred HHCCHHHHHHHHHHH--HCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHE Q ss_conf 000102477654331--0123233343033058601000002211100000022111211100 Q gi|255764461|r 270 FHAIYWPAFLLSANL--PLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLV 330 (511) Q Consensus 270 Fh~i~~pa~l~~~~~--~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~ 330 (511) ||+ +|.++..+=+ +-..++.+||| |-.|+.-+|-|+.-.-..| ||-|+ T Consensus 106 fHG--Yp~lI~~L~~~R~n~~n~hV~GY---------~EeGttTTPFDM~v~N~~d--RfhLa 155 (203) T pfam09363 106 FHG--YPWLIHRLTYRRTNHHNLHVRGY---------KEEGTTTTPFDMRVLNELD--RFHLA 155 (203) T ss_pred CCC--CHHHHHHHHCCCCCCCCEEEEEE---------CCCCCCCCCHHHHHHCCCC--HHHHH T ss_conf 179--88899998557899884578710---------0178878716788770766--89999 No 254 >PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated Probab=24.59 E-value=39 Score=12.73 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=35.6 Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999988589803623643702279999999839998999999999999999980889886 Q gi|255764461|r 32 DVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD 93 (511) Q Consensus 32 D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~ 93 (511) +.+. .++.+|+.+..||. |+-| ..|.-..+-++..++.+.+.+...|+.+|. T Consensus 36 ~al~-~l~~~g~~~~ivTN----QsGI-----~rG~~t~~~~~~i~~~m~~~l~~~g~~id~ 87 (181) T PRK08942 36 EAIA-RLKQAGYRVVVATN----QSGI-----ARGLFTEAQLNALHEKMDWSLADRGGDLDG 87 (181) T ss_pred HHHH-HHHHCCCEEEEEEC----CHHH-----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 9999-99987996999958----7134-----258677999999999999999976994313 No 255 >cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Probab=24.31 E-value=39 Score=12.69 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=22.4 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCC Q ss_conf 88881799788899998832224789789999999988589803623-64370 Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT-TGTDE 53 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~-~g~D~ 53 (511) ++-||+..|+. -+ ..+|.||+.-.- ..+..|.. +.| -.+|. T Consensus 1 ~~gkkiv~~~G-~F--Dl~H~GHi~~l~-------~Ak~~gd~-LiVgv~sD~ 42 (143) T cd02172 1 AEGKKVVLTHG-CF--DLLHAGHVRHLL-------AARSLGDI-LVVGLTSDR 42 (143) T ss_pred CCCCEEEEECC-EE--CCCCHHHHHHHH-------HHHHCCCE-EEEEEECCH T ss_conf 98898999927-33--778999999999-------99974998-999996898 No 256 >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Probab=24.29 E-value=39 Score=12.69 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=20.0 Q ss_pred HHHCCCCCCC--CCCHHHHCCCCC--CCCCCCCCCCE Q ss_conf 0101133430--155667211122--22222233200 Q gi|255764461|r 125 SGWYSLRDEA--YYNDDEVYKGAD--GQYYNAQHNPV 157 (511) Q Consensus 125 ~~~y~~~~~~--~~~~~~v~~~~~--~~~~~~~~~p~ 157 (511) +-|-||.|+- |..|..+..|-| ..-|..||.|. T Consensus 913 PHY~Cp~Cky~Ef~~d~svgsGfDLpdK~CPkCg~pl 949 (1444) T COG2176 913 PHYLCPECKYSEFIDDGSVGSGFDLPDKDCPKCGTPL 949 (1444) T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 6532888740466237876778888999898679943 No 257 >PRK06526 transposase; Provisional Probab=24.21 E-value=39 Score=12.68 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=29.3 Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHH---------HHHHHHHHHHHHHCCC Q ss_conf 9999998858980362364370227999999983999899999---------9999999999980889 Q gi|255764461|r 32 DVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVD---------QNSRNFRDMADVLDIS 90 (511) Q Consensus 32 D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~---------~~~~~~~~~~~~~~i~ 90 (511) +.+.|-+|+.|..-.+ ..+...|.+++.++.|+.. +-...+...++..++. T Consensus 6 ~~llr~LrL~~ma~~~--------~~~~~~a~~~~~s~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp 65 (254) T PRK06526 6 AYLTRALKAPSLAGAV--------ERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIRAARFP 65 (254) T ss_pred HHHHHHCCHHHHHHHH--------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999983837899999--------99998887659999999999999999999998999999977979 No 258 >COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism] Probab=24.15 E-value=40 Score=12.67 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=8.8 Q ss_pred CCCCHHHHHHHHHH Q ss_conf 39998999999999 Q gi|255764461|r 65 AGVTTKVFVDQNSR 78 (511) Q Consensus 65 ~g~~p~e~~~~~~~ 78 (511) .|.+++|.+..... T Consensus 32 ~G~~~ee~a~~iA~ 45 (429) T COG1850 32 SGVSTEEAAAAIAG 45 (429) T ss_pred CCCCHHHHHHHHCC T ss_conf 99897998776303 No 259 >COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] Probab=24.01 E-value=25 Score=14.15 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=20.3 Q ss_pred CCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHH Q ss_conf 32333430330586010000022111000000221112111 Q gi|255764461|r 288 KKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYF 328 (511) Q Consensus 288 ~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~ 328 (511) +.++.|||+.+||++- =.|.-++..-..+.+++. T Consensus 113 RQlV~HGHI~VnGk~V-------~iPSy~V~~gdei~V~~k 146 (205) T COG0522 113 RQLVSHGHILVNGKRV-------NIPSYLVSPGDEISVREK 146 (205) T ss_pred HHHHHCCEEEECCEEE-------CCCCEEECCCCEEEEECC T ss_conf 9884066289999995-------267379637778875203 No 260 >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Probab=23.97 E-value=35 Score=13.06 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=13.4 Q ss_pred CCCCCHHHHCCCC---CCCHHHEEECCCCCCCEEC Q ss_conf 1110000002211---1211100002478730111 Q gi|255764461|r 311 IDPIEVIEEVGVD---ALRYFLVREIACGKDGFYD 342 (511) Q Consensus 311 I~~~e~l~~~g~D---~lR~~l~~~~~~~~D~~Fs 342 (511) +.+.++++..+.. .+.++=--...+|.|.||. T Consensus 267 lsl~~~v~~~s~nPAki~gl~~kG~i~~G~dADlv 301 (337) T cd01302 267 LSLETLVEILSENPARIFGLYPKGTIAVGYDADLV 301 (337) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE T ss_conf 99999999997889999598988861689957889 No 261 >cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. Probab=23.48 E-value=41 Score=12.58 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=20.6 Q ss_pred CCCCCCEEECCC-CCCHHHCCCCCCCCHHHHCCCCCCCH Q ss_conf 333430330586-01000002211100000022111211 Q gi|255764461|r 290 VFSHGFILHKGE-KISKSLGNVIDPIEVIEEVGVDALRY 327 (511) Q Consensus 290 i~~~g~l~~~G~-KMSKS~GN~I~~~e~l~~~g~D~lR~ 327 (511) ++.-||++.||. -=-|-+-|.||.-=.++.-.-..+|. T Consensus 203 ~~lVGHVTK~G~iAGPkvLEHmVDtVl~fEgd~~~~~R~ 241 (372) T cd01121 203 IFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRI 241 (372) T ss_pred EEEEEEECCCCCCCCCHHHEEEEEEEEEECCCCCCCEEE T ss_conf 999987626886377403100213688751577655035 No 262 >PRK12314 gamma-glutamyl kinase; Provisional Probab=23.42 E-value=41 Score=12.57 Aligned_cols=113 Identities=9% Similarity=0.189 Sum_probs=57.9 Q ss_pred CCCCCEEEEE---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC-CCCCCHHHHHHHHHCCCCHHHHHH-- Q ss_conf 9888817997---8889999883222478978999999998858980362364-370227999999983999899999-- Q gi|255764461|r 1 MKEREKLYIS---TAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG-TDEHGQKIAKAAQNAGVTTKVFVD-- 74 (511) Q Consensus 1 m~~~~~~~vt---~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g-~D~hg~~i~~~A~~~g~~p~e~~~-- 74 (511) |++.||+.|- +-+--.+|.+....+... ++.+++. +.+|++|..|++ .=.-|.+.. +....|.++.+ T Consensus 6 ~~~~krIViKiG~s~lt~~~g~~~~~~i~~l--a~~I~~l-~~~G~~vvlVsSGav~~G~~~l----~~~~~~~~~~~~q 78 (265) T PRK12314 6 LESAKRIVIKVGSSSLSYENGKINLERIEQL--VFVISDL-MNKGKEVILVSSGAIGAGLTKL----KLDKRPTNLAEKQ 78 (265) T ss_pred HCCCCEEEEEECHHHEECCCCCCCHHHHHHH--HHHHHHH-HHCCCEEEEECCCHHHCCCCCC----CCCCCCCCHHHHH T ss_conf 5308789999661126789998599999999--9999999-9789989998637443150013----8877876246799 Q ss_pred --------HHHHHHHHHHHHHCCCCCCC--CC--CCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf --------99999999999808898867--47--788889999999988875431022 Q gi|255764461|r 75 --------QNSRNFRDMADVLDISYDDF--IR--TTEKRHHDTCRILWKKISDKGDIY 120 (511) Q Consensus 75 --------~~~~~~~~~~~~~~i~~D~~--~r--T~~~~~~~~~~~~~~~l~~~G~iy 120 (511) .....+.+.|..+|+....- ++ ..++.+..-++..+.+|.+.|.|- T Consensus 79 a~aavGq~~Lm~~y~~~f~~~~~~~aQiLlt~~d~~~~~~~~n~~~tl~~ll~~g~IP 136 (265) T PRK12314 79 ALAAVGQPELMSLYSQFFARYGIVVGQILLTRDDFDSPKSRANVKNTFESLLELGILP 136 (265) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 9999727999999998865449815888504432127999999999999998489566 No 263 >COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] Probab=23.39 E-value=41 Score=12.57 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=24.8 Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 8322247-897899999999885898036236437 Q gi|255764461|r 19 QPHIGHA-YEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 19 ~lHlGH~-~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ..-+||. |+- .++|.++.+|..++|++++| T Consensus 12 ~iGmGHV~R~l----~LA~~l~k~~~~~~fl~k~~ 42 (318) T COG3980 12 EIGMGHVMRTL----TLARELEKRGFACLFLTKQD 42 (318) T ss_pred CCCCCHHHHHH----HHHHHHHHCCCEEEEECCCC T ss_conf 55751345599----99999985174688840662 No 264 >PRK08181 transposase; Validated Probab=23.34 E-value=41 Score=12.56 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=20.5 Q ss_pred HHHHHHHHCCCCHHHHHHH---------HHHHHHHHHHHHCCC Q ss_conf 9999999839998999999---------999999999980889 Q gi|255764461|r 57 KIAKAAQNAGVTTKVFVDQ---------NSRNFRDMADVLDIS 90 (511) Q Consensus 57 ~i~~~A~~~g~~p~e~~~~---------~~~~~~~~~~~~~i~ 90 (511) .+...|.+++.++.|+... -...+...++..++. T Consensus 30 ~~~~~a~~~~~s~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp 72 (269) T PRK08181 30 QFAEQADKEGWPAARFLAAIAEHEIAERARRRIERHLAEAHLP 72 (269) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999998759999999999999999999999999999868979 No 265 >PRK09850 hypothetical protein; Provisional Probab=23.22 E-value=41 Score=12.55 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=34.4 Q ss_pred CCCCCEEEEECCC----------CCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCC Q ss_conf 9888817997888----------99998832224789789--999999988589803623--643702279999999839 Q gi|255764461|r 1 MKEREKLYISTAI----------AYPNAQPHIGHAYEMII--ADVLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAG 66 (511) Q Consensus 1 m~~~~~~~vt~~~----------Py~ng~lHlGH~~~~i~--~D~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g 66 (511) |+++++++|.... |..-|.-+.|...-... +==.|.-....|.+|.++ -|.|.+|..+....+++| T Consensus 1 ~~~~~~I~ViGs~n~D~~~~~~~~~~~get~~g~~~~~~GGkg~N~A~~~arLG~~v~~i~~VG~D~~G~~l~~~l~~~G 80 (313) T PRK09850 1 MREKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSG 80 (313) T ss_pred CCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCC T ss_conf 99799689988556877763388999998666607988884799999999976998079998608668999999999849 Q ss_pred CC Q ss_conf 99 Q gi|255764461|r 67 VT 68 (511) Q Consensus 67 ~~ 68 (511) +. T Consensus 81 V~ 82 (313) T PRK09850 81 VY 82 (313) T ss_pred CC T ss_conf 97 No 266 >COG4671 Predicted glycosyl transferase [General function prediction only] Probab=23.21 E-value=41 Score=12.54 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=26.7 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 888817997888999988322247-89789999999988589803623643 Q gi|255764461|r 2 KEREKLYISTAIAYPNAQPHIGHA-YEMIIADVLARFHRLDGLDVLFTTGT 51 (511) Q Consensus 2 ~~~~~~~vt~~~Py~ng~lHlGH~-~~~i~~D~~~R~~r~~G~~v~~~~g~ 51 (511) ++.+|++ -|.-.-+-|||+ |+...+-.++ ....|.+|+++||. T Consensus 7 ~~~~Ri~-----~Yshd~~GlGHlrR~~~Ia~aLv--~d~~~~~Il~IsG~ 50 (400) T COG4671 7 SKRPRIL-----FYSHDLLGLGHLRRALRIAHALV--EDYLGFDILIISGG 50 (400) T ss_pred HCCCEEE-----EEEHHHCCCHHHHHHHHHHHHHH--HCCCCCEEEEEECC T ss_conf 0062578-----98601013048999999999985--25568439999589 No 267 >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional Probab=23.01 E-value=42 Score=12.52 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.5 Q ss_pred ECCCCCCHHH Q ss_conf 0586010000 Q gi|255764461|r 298 HKGEKISKSL 307 (511) Q Consensus 298 ~~G~KMSKS~ 307 (511) .+|-|+|+.+ T Consensus 140 idG~~ls~a~ 149 (395) T PRK06939 140 IDGVRLCKAK 149 (395) T ss_pred HHHHHHCCCC T ss_conf 9999865894 No 268 >PRK09183 transposase/IS protein; Provisional Probab=22.85 E-value=42 Score=12.49 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=21.4 Q ss_pred HHHHHHHHCCCCHHHHHH---------HHHHHHHHHHHHHCCC Q ss_conf 999999983999899999---------9999999999980889 Q gi|255764461|r 57 KIAKAAQNAGVTTKVFVD---------QNSRNFRDMADVLDIS 90 (511) Q Consensus 57 ~i~~~A~~~g~~p~e~~~---------~~~~~~~~~~~~~~i~ 90 (511) .....|.+++.++.|+.. +-.......++..++. T Consensus 26 ~~~~~a~~~~~s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp 68 (258) T PRK09183 26 ALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFP 68 (258) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999887639999999999999999999999999999977999 No 269 >PRK05629 hypothetical protein; Validated Probab=22.76 E-value=42 Score=12.48 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=18.5 Q ss_pred HHCCCCCCC--CCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCH Q ss_conf 101232333--43033058601000002211100000022111211 Q gi|255764461|r 284 LPLPKKVFS--HGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRY 327 (511) Q Consensus 284 ~~~p~~i~~--~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~ 327 (511) -+.|.++++ |.- ...++|+-|.+...=...+.-..++.|..+| T Consensus 102 ~p~p~t~LV~~~~~-~dkrkkl~k~l~k~g~v~e~~~l~~~~l~~w 146 (331) T PRK05629 102 DPSPGTYLIVMHSG-GGRSKSMVKKLEKVAVVHDAAKLKDRDRPGW 146 (331) T ss_pred CCCCCEEEEEEECC-CCCCHHHHHHHHCCEEEEECCCCCHHHHHHH T ss_conf 99996499998458-7510679999860746986688999999999 No 270 >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=22.37 E-value=43 Score=12.43 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=26.2 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 17997888999988322247897899999999885898036236437 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) ||.+.| | +++|=+..+ .--++|.+..+|++|..+|... T Consensus 2 kI~i~~---~----P~~GG~e~~--v~~La~~L~~~GHeV~vit~~~ 39 (371) T cd04962 2 KIGIVC---Y----PTYGGSGVV--ATELGKALARRGHEVHFITSSR 39 (371) T ss_pred EEEEEC---C----CCCCCHHHH--HHHHHHHHHHCCCEEEEEECCC T ss_conf 799989---9----999869999--9999999997599999995689 No 271 >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor. Probab=22.18 E-value=43 Score=12.40 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHC Q ss_conf 9999998887543102211000101 Q gi|255764461|r 104 DTCRILWKKISDKGDIYKGCYSGWY 128 (511) Q Consensus 104 ~~~~~~~~~l~~~G~iy~~~~~~~y 128 (511) ..+++.+..|.+.|+++.....|.| T Consensus 35 ~tvr~A~~~L~~~G~i~~~~g~G~~ 59 (60) T smart00345 35 TTVREALSRLEAEGLVQRRPGSGTF 59 (60) T ss_pred HHHHHHHHHHHHCCCEEEECCCEEE T ss_conf 9999999999988978996685467 No 272 >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. Probab=22.07 E-value=43 Score=12.39 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=29.5 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC Q ss_conf 1799788899998832224789789999999988589803623643 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT 51 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~ 51 (511) ||++.|+..|| ++|=+-.++ --++|.+..+|++|..+|.. T Consensus 1 RI~ivt~~f~P----~iGG~e~~v--~~La~~L~~~Gh~V~Vit~~ 40 (398) T cd03796 1 RICMVSDFFYP----NLGGVETHI--YQLSQCLIKRGHKVVVITHA 40 (398) T ss_pred CEEEEECCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECC T ss_conf 98999488799----999779999--99999999769989999689 No 273 >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog Probab=21.99 E-value=43 Score=12.38 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=29.0 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 17997888999988322247897899999999885898036236437 Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52 (511) Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D 52 (511) |+++.+...|| ++|=+..++ --+++.+..+|++|..+|..+ T Consensus 1 kIL~i~~~f~P----~~GG~e~~~--~~L~~~L~~~Gh~V~v~~~~~ 41 (357) T cd03795 1 RVLHVGKFYPP----DRGGIEQVI--RDLAEGLAARGIEVAVLCASP 41 (357) T ss_pred CEEEECCCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECCC T ss_conf 99999382899----898299999--999999997799899998279 No 274 >PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional Probab=21.92 E-value=44 Score=12.37 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=15.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 88322247897899999999885898 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLDGL 43 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~G~ 43 (511) .|+|.||+ |++.|-.++=.. T Consensus 11 DPiT~GHl------DIi~RA~~lFD~ 30 (140) T PRK13964 11 DPFHNGHI------NILKKALKLFDK 30 (140) T ss_pred CCCCCCHH------HHHHHHHHHCCE T ss_conf 98854289------999999986898 No 275 >PRK11367 hypothetical protein; Provisional Probab=21.66 E-value=37 Score=12.89 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 999999999999998088 Q gi|255764461|r 72 FVDQNSRNFRDMADVLDI 89 (511) Q Consensus 72 ~~~~~~~~~~~~~~~~~i 89 (511) ++++..++.+...-..++ T Consensus 35 ~v~~~N~~lk~~~p~~~~ 52 (476) T PRK11367 35 FIKDFNDAKKKGEHAYDM 52 (476) T ss_pred HHHHHHHHHHHCCCCCCE T ss_conf 999999998753877670 No 276 >PRK05664 threonine-phosphate decarboxylase; Reviewed Probab=21.39 E-value=43 Score=12.43 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.4 Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 0227999999983999899999999 Q gi|255764461|r 53 EHGQKIAKAAQNAGVTTKVFVDQNS 77 (511) Q Consensus 53 ~hg~~i~~~A~~~g~~p~e~~~~~~ 77 (511) +||-.|...|++.|++|++++|-.+ T Consensus 3 ~HGGni~~~a~~~G~~~~~iiDfSs 27 (330) T PRK05664 3 EHGGRLRRAAQRYGIPLADWLDLST 27 (330) T ss_pred CCCCHHHHHHHHHCCCHHHEEECCC T ss_conf 6885199999996949999155378 No 277 >COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism] Probab=21.21 E-value=29 Score=13.68 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCHH--HHHHHHCCC Q ss_conf 86422214646024--443220012 Q gi|255764461|r 220 IPDDPQYIMYVWID--ALTNYLTTT 242 (511) Q Consensus 220 iP~~~~~~~YVWfD--a~~gY~s~~ 242 (511) .|.-.+++||-||| +|.+|++.. T Consensus 2 ~~~~~~ktIef~fdf~SP~ayL~~~ 26 (203) T COG3917 2 PPEGMNKTIEFYFDFSSPYAYLAWP 26 (203) T ss_pred CCCCCCCEEEEEEECCCCHHHHHHH T ss_conf 8778886069999658815876024 No 278 >TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination. Probab=21.09 E-value=45 Score=12.25 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHHHHCC--CCE-EECCC--CCCCCH--HHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHCCCC Q ss_conf 9789999999988589--803-62364--370227--9999999839998999999999999--9999808898 Q gi|255764461|r 27 EMIIADVLARFHRLDG--LDV-LFTTG--TDEHGQ--KIAKAAQNAGVTTKVFVDQNSRNFR--DMADVLDISY 91 (511) Q Consensus 27 ~~i~~D~~~R~~r~~G--~~v-~~~~g--~D~hg~--~i~~~A~~~g~~p~e~~~~~~~~~~--~~~~~~~i~~ 91 (511) +.+.+=+++||++..| -.| .++++ +|.||. .+..++.+.|++--=-||==..++. +..+..|+++ T Consensus 68 GiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~~~~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dV 141 (705) T TIGR00644 68 GITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEALRELKENGVSLIITVDNGISAHEEIEYAKELGIDV 141 (705) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEE T ss_conf 68999999999995099732466626635777788989999998669839998268742699999998669819 No 279 >cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. . Probab=21.01 E-value=45 Score=12.24 Aligned_cols=58 Identities=16% Similarity=-0.004 Sum_probs=31.9 Q ss_pred CCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCCC Q ss_conf 88899998832224789789--999999988589803623--64370227999999983999 Q gi|255764461|r 11 TAIAYPNAQPHIGHAYEMII--ADVLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGVT 68 (511) Q Consensus 11 ~~~Py~ng~lHlGH~~~~i~--~D~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~~ 68 (511) .-+|-+....+.-+...... +==.++.+...|.+|.|+ -|.|.+|..+....+++|++ T Consensus 17 ~~~P~~ge~~~~~~~~~~~GG~~~NvA~~larLG~~~~~ig~vG~D~~G~~l~~~L~~~gV~ 78 (284) T cd01945 17 ASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVD 78 (284) T ss_pred CCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCC T ss_conf 67899998799804688128589999999998699768999854846899999999982998 No 280 >smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance. Probab=20.99 E-value=45 Score=12.23 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=4.5 Q ss_pred HHHHHHHHHHC Q ss_conf 99888754310 Q gi|255764461|r 108 ILWKKISDKGD 118 (511) Q Consensus 108 ~~~~~l~~~G~ 118 (511) ++|.++.++|| T Consensus 34 ~l~~~i~~nGY 44 (157) T smart00775 34 KLYRDIQNNGY 44 (157) T ss_pred HHHHHHHHCCC T ss_conf 99999997894 No 281 >cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form Probab=20.90 E-value=46 Score=12.22 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=4.7 Q ss_pred HHHHHCCCCCCC Q ss_conf 999984988000 Q gi|255764461|r 472 KIFDILFVADEN 483 (511) Q Consensus 472 ~i~~~Lg~~~~~ 483 (511) +.+..+|++.+. T Consensus 218 ~~L~~~Gv~~~~ 229 (235) T cd06217 218 RLLLELGVPRDR 229 (235) T ss_pred HHHHHCCCCHHH T ss_conf 999986997899 No 282 >pfam01467 CTP_transf_2 Cytidylyltransferase. This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Probab=20.88 E-value=46 Score=12.22 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=14.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCC-EEECCC Q ss_conf 883222478978999999998858980-362364 Q gi|255764461|r 18 AQPHIGHAYEMIIADVLARFHRLDGLD-VLFTTG 50 (511) Q Consensus 18 g~lHlGH~~~~i~~D~~~R~~r~~G~~-v~~~~g 50 (511) .|+|+||+.- ..+.++..+.+ |.++.+ T Consensus 7 dP~H~GHl~i------~~~a~~~~~~d~v~~ip~ 34 (148) T pfam01467 7 DPIHLGHLRL------LEQAKELFDLDKIVGVPS 34 (148) T ss_pred CCCCHHHHHH------HHHHHHHCCCCEEEEEEC T ss_conf 9887999999------999999769987999976 No 283 >pfam10929 DUF2811 Protein of unknown function (DUF2811). This is a bacterial family of uncharacterized proteins. Probab=20.88 E-value=19 Score=14.95 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=4.3 Q ss_pred CCCCCCCCCCC Q ss_conf 34567532343 Q gi|255764461|r 201 KSGLKDLSLSR 211 (511) Q Consensus 201 ~~gl~Dw~ISR 211 (511) .+|-.|++++| T Consensus 40 QnG~~~r~vtr 50 (57) T pfam10929 40 QNGCQDRAVTR 50 (57) T ss_pred HCCCCCHHHHH T ss_conf 84886228899 No 284 >PRK00448 polC DNA polymerase III PolC; Validated Probab=20.86 E-value=46 Score=12.22 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=17.3 Q ss_pred HHCCCCCCC--CCCHHHHCCCCC--CCCCCCCCCCE Q ss_conf 101133430--155667211122--22222233200 Q gi|255764461|r 126 GWYSLRDEA--YYNDDEVYKGAD--GQYYNAQHNPV 157 (511) Q Consensus 126 ~~y~~~~~~--~~~~~~v~~~~~--~~~~~~~~~p~ 157 (511) -|+||.|+- |..+..+..|.| ...|..||.+. T Consensus 907 HY~Cp~Cky~ef~~~g~~~sGyDLpdk~CP~Cg~~l 942 (1436) T PRK00448 907 HYVCPNCKYSEFFTDGSVGSGYDLPDKDCPKCGTKL 942 (1436) T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 225765540000246654657778656686434300 No 285 >KOG0743 consensus Probab=20.80 E-value=46 Score=12.21 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHH Q ss_conf 6789999999999877503--5899999999999 Q gi|255764461|r 390 ILSVCSRVLQEIRENMQNQ--LIHRALAQVISLV 421 (511) Q Consensus 390 ll~~l~~~~~~v~~a~e~~--~~~~Al~~i~~l~ 421 (511) ++....-.+.++.+.+-.. +-..|++.+.+.. T Consensus 398 l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l 431 (457) T KOG0743 398 LIEETEVTPAQVAEELMKNKNDADVALKGLVEAL 431 (457) T ss_pred HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 7633746899999998635653889999999998 No 286 >pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). Probab=20.67 E-value=46 Score=12.19 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=5.3 Q ss_pred HHHHHHHHHCC Q ss_conf 98887543102 Q gi|255764461|r 109 LWKKISDKGDI 119 (511) Q Consensus 109 ~~~~l~~~G~i 119 (511) ...+|.++|.| T Consensus 6 Lv~~l~~~g~i 16 (205) T pfam01135 6 LIENLKNYGVI 16 (205) T ss_pred HHHHHHHCCCC T ss_conf 99999983998 No 287 >pfam06354 consensus Probab=20.32 E-value=47 Score=12.14 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=14.4 Q ss_pred CCCCCCCCHHHHHHHHHCCCCHH Q ss_conf 36437022799999998399989 Q gi|255764461|r 48 TTGTDEHGQKIAKAAQNAGVTTK 70 (511) Q Consensus 48 ~~g~D~hg~~i~~~A~~~g~~p~ 70 (511) |+||...|.++....--.+=+|. T Consensus 60 IPgTg~~G~~~AaalG~v~Gd~~ 82 (429) T pfam06354 60 VPGTGKVGLVIAAALGALLGKSE 82 (429) T ss_pred ECCCCCCCHHHHHHHHHHCCCCC T ss_conf 48999847699999988717940 No 288 >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. Probab=20.26 E-value=47 Score=12.13 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCC Q ss_conf 9999999988589803623643702 Q gi|255764461|r 30 IADVLARFHRLDGLDVLFTTGTDEH 54 (511) Q Consensus 30 ~~D~~~R~~r~~G~~v~~~~g~D~h 54 (511) ..--+++.+..+||+|..+|..+.. T Consensus 15 ~~~~La~~L~~~Gh~V~vit~~~~~ 39 (359) T cd03808 15 FRLPLIKALRAAGYEVHVVAPPGDE 39 (359) T ss_pred HHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 9999999999769999999707987 No 289 >cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution. Probab=20.18 E-value=47 Score=12.12 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=24.7 Q ss_pred HHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCCCH Q ss_conf 99988589803623--643702279999999839998 Q gi|255764461|r 35 ARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGVTT 69 (511) Q Consensus 35 ~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~~p 69 (511) +..+...|.+|.++ -|.|.+|..+....++.|++. T Consensus 43 A~~la~LG~~~~~~~~vG~D~~G~~i~~~l~~~gV~~ 79 (292) T cd01174 43 AVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDV 79 (292) T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC T ss_conf 9999987998699997458807899999998628875 No 290 >cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily. Probab=20.04 E-value=47 Score=12.10 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=29.1 Q ss_pred HHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCCCH Q ss_conf 9999988589803623--643702279999999839998 Q gi|255764461|r 33 VLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGVTT 69 (511) Q Consensus 33 ~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~~p 69 (511) -.+..++..|.+|.|+ .|.|.+|..+....++.|+.. T Consensus 44 NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~~gV~~ 82 (304) T cd01172 44 NVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGIDT 82 (304) T ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC T ss_conf 999999986996799985069868999999999709975 Done!