Query         gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 511
No_of_seqs    215 out of 7498
Neff          7.6 
Searched_HMMs 39220
Date          Mon May 23 21:37:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764461.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK12267 methionyl-tRNA synthe 100.0       0       0 1123.3  33.9  503    4-510     3-510 (644)
  2 PRK00133 metG methionyl-tRNA s 100.0       0       0 1103.7  32.1  495    5-510     2-530 (666)
  3 COG0143 MetG Methionyl-tRNA sy 100.0       0       0 1105.4  30.5  509    1-510     1-544 (558)
  4 TIGR00398 metG methionyl-tRNA  100.0       0       0 1099.1  28.2  503    7-511     1-573 (573)
  5 PRK11893 methionyl-tRNA synthe 100.0       0       0 1047.8  35.9  505    5-510     1-509 (512)
  6 PRK12268 methionyl-tRNA synthe 100.0       0       0 1041.6  32.1  502    5-510     3-542 (558)
  7 KOG0436 consensus              100.0       0       0  844.7  28.1  506    4-509    38-567 (578)
  8 TIGR00422 valS valyl-tRNA synt 100.0       0       0  766.8  27.0  479    5-494    35-821 (970)
  9 pfam09334 tRNA-synt_1g tRNA sy 100.0       0       0  759.3  16.5  358    7-366     1-388 (388)
 10 KOG1247 consensus              100.0       0       0  764.2  12.4  501    3-510    12-549 (567)
 11 PRK05729 valS valyl-tRNA synth 100.0       0       0  716.2  27.1  479    2-491    32-710 (877)
 12 PRK13208 valS valyl-tRNA synth 100.0       0       0  702.8  27.6  472    3-489    36-721 (809)
 13 COG0525 ValS Valyl-tRNA synthe 100.0       0       0  701.5  28.4  468    5-489    33-708 (877)
 14 PRK06039 ileS isoleucyl-tRNA s 100.0       0       0  693.7  24.3  480    3-492    33-789 (1042)
 15 PRK05743 ileS isoleucyl-tRNA s 100.0       0       0  669.4  27.6  470    3-491    47-784 (910)
 16 PRK13804 ileS isoleucyl-tRNA s 100.0       0       0  662.3  28.6  469    3-490    52-825 (966)
 17 TIGR00392 ileS isoleucyl-tRNA  100.0       0       0  645.4  22.2  465    3-479    34-860 (938)
 18 COG0060 IleS Isoleucyl-tRNA sy 100.0       0       0  634.0  26.2  472    3-492    47-795 (933)
 19 cd00814 MetRS_core This is the 100.0       0       0  646.6  17.4  316    6-341     1-319 (319)
 20 PRK00390 leuS leucyl-tRNA synt 100.0       0       0  629.1  25.2  452    2-493    29-756 (822)
 21 TIGR00396 leuS_bact leucyl-tRN 100.0       0       0  618.0  21.6  475    1-493    27-847 (916)
 22 cd00817 ValRS_core This is the 100.0       0       0  620.4  14.0  303    5-341     1-363 (363)
 23 cd00818 IleRS_core This is the 100.0       0       0  606.4  14.7  304    5-341     1-339 (339)
 24 PRK12300 leuS leucyl-tRNA synt 100.0       0       0  585.5  23.5  441   20-490     1-736 (888)
 25 cd00812 LeuRS_core This is the 100.0       0       0  587.6  16.1  316    6-341     1-376 (376)
 26 COG0495 LeuS Leucyl-tRNA synth 100.0       0       0  573.8  21.0  455    5-491    34-747 (814)
 27 cd00668 Ile_Leu_Val_MetRS_core 100.0       0       0  579.8  15.1  300    6-341     1-334 (334)
 28 pfam00133 tRNA-synt_1 tRNA syn 100.0       0       0  555.6  11.9  333    3-342    21-606 (606)
 29 KOG0432 consensus              100.0       0       0  500.1  23.6  458    4-479    74-808 (995)
 30 TIGR00395 leuS_arch leucyl-tRN 100.0       0       0  509.4  12.9  459    5-489    41-917 (1109)
 31 KOG0435 consensus              100.0       0       0  478.8  16.5  449    3-480    56-782 (876)
 32 KOG0433 consensus              100.0       0       0  463.0  25.5  436   16-480    66-798 (937)
 33 pfam01406 tRNA-synt_1e tRNA sy 100.0       0       0  451.2  14.0  291    3-351     8-301 (301)
 34 KOG0434 consensus              100.0       0       0  427.8  21.7  469    2-478    35-784 (1070)
 35 PRK00260 cysS cysteinyl-tRNA s 100.0 1.8E-44       0  347.7  21.7  342    4-431    23-373 (460)
 36 COG0215 CysS Cysteinyl-tRNA sy 100.0 6.2E-42       0  329.0  16.7  346    4-430    22-377 (464)
 37 TIGR00435 cysS cysteinyl-tRNA  100.0 1.5E-41       0  326.2  16.9  370    4-429    22-541 (660)
 38 KOG0437 consensus              100.0 1.3E-41       0  326.5  14.8  447    3-483    42-874 (1080)
 39 PRK12418 cysteinyl-tRNA synthe 100.0 3.8E-38 9.8E-43  301.0  17.2  338    4-430     9-364 (384)
 40 TIGR03447 mycothiol_MshC cyste 100.0 7.7E-38   2E-42  298.7  16.9  338    4-428    36-389 (411)
 41 KOG2007 consensus              100.0 1.2E-33 3.1E-38  267.7  20.2  359    4-432    55-428 (586)
 42 cd00672 CysRS_core This is the 100.0 3.6E-29 9.1E-34  234.7  10.0  189    4-342    20-213 (213)
 43 cd07957 Anticodon_Ia_Met Antic  99.9 4.8E-25 1.2E-29  204.2  13.0  128  350-477     1-129 (129)
 44 PRK12451 arginyl-tRNA syntheta  99.9 9.6E-22 2.4E-26  179.8  23.8  332    2-432   110-525 (562)
 45 PRK01611 argS arginyl-tRNA syn  99.9   3E-21 7.6E-26  176.1  22.8  335    3-432   116-531 (570)
 46 COG0018 ArgS Arginyl-tRNA synt  99.9 2.2E-20 5.5E-25  169.8  20.7  345    3-441   115-545 (577)
 47 cd00802 class_I_aaRS_core Clas  99.8   1E-20 2.7E-25  172.1   7.2  140    8-306     1-142 (142)
 48 TIGR00456 argS arginyl-tRNA sy  99.8 3.7E-18 9.3E-23  153.3  17.8  346    3-441   116-568 (600)
 49 PRK00750 lysK lysyl-tRNA synth  99.8 2.2E-16 5.5E-21  140.2  17.2  256    4-343    28-326 (513)
 50 COG1384 LysS Lysyl-tRNA synthe  99.7 4.8E-15 1.2E-19  130.3  18.8  256    5-345    19-319 (521)
 51 pfam01921 tRNA-synt_1f tRNA sy  99.7 6.7E-17 1.7E-21  144.0   8.2  263    4-348    18-323 (355)
 52 cd00674 LysRS_core_class_I Thi  99.7 1.3E-16 3.3E-21  141.8   8.0  257    4-343    18-316 (354)
 53 pfam00750 tRNA-synt_1d tRNA sy  99.7 6.3E-16 1.6E-20  136.8  11.3  121    3-123    17-186 (345)
 54 cd07961 Anticodon_Ia_Ile_ABEc   99.7 1.8E-15 4.6E-20  133.4  12.0  149  341-492     1-159 (183)
 55 cd07962 Anticodon_Ia_Val Antic  99.7   2E-15   5E-20  133.2  11.4  130  341-477     1-135 (135)
 56 cd07960 Anticodon_Ia_Ile_BEm A  99.6 3.5E-14 8.8E-19  124.0  10.4  135  352-491    10-155 (180)
 57 pfam08264 Anticodon_1 Anticodo  99.4 3.7E-12 9.4E-17  109.0  11.5   93  387-480     1-95  (148)
 58 cd07958 Anticodon_Ia_Leu_BEm A  99.4 2.2E-12 5.6E-17  110.6  10.3  116  342-477     2-117 (117)
 59 cd07959 Anticodon_Ia_Leu_AEc A  99.3 3.5E-11 8.9E-16  101.8  10.8  102  364-477    15-117 (117)
 60 PRK00574 gltX glutamyl-tRNA sy  99.3 2.1E-10 5.3E-15   96.0  14.4  268   14-349    11-303 (489)
 61 PRK12558 glutamyl-tRNA synthet  99.2 1.8E-10 4.6E-15   96.5  11.8  274   14-349     9-298 (461)
 62 PRK12410 glutamyl-tRNA synthet  99.2   2E-10   5E-15   96.2  11.5  265   14-349     6-282 (433)
 63 cd07375 Anticodon_Ia_like Anti  99.2 1.8E-10 4.7E-15   96.4  10.2  107  353-466     9-117 (117)
 64 TIGR00464 gltX_bact glutamyl-t  99.1 7.4E-09 1.9E-13   84.6  14.5  270   14-349     8-321 (513)
 65 PRK01406 gltX glutamyl-tRNA sy  99.0 3.4E-10 8.6E-15   94.5   5.7  264   14-349     9-290 (467)
 66 COG0008 GlnS Glutamyl- and glu  99.0 6.1E-10 1.5E-14   92.6   6.9   95    8-122    10-105 (472)
 67 pfam00749 tRNA-synt_1c tRNA sy  99.0 3.4E-10 8.7E-15   94.4   5.4   90   13-122     7-97  (314)
 68 PRK04156 gltX glutamyl-tRNA sy  99.0 1.6E-09 4.1E-14   89.5   8.1  282    8-358   101-408 (566)
 69 PRK05710 glutamyl-Q tRNA(Asp)   98.9 1.1E-08 2.7E-13   83.4   8.9   96    8-122     5-100 (299)
 70 cd00418 GlxRS_core Glutamyl-tR  98.7 1.1E-07 2.7E-12   76.0   9.4   85   13-117     7-92  (223)
 71 cd00671 ArgRS_core This is the  98.7 2.3E-07 5.9E-12   73.5   9.2   58    6-63      1-58  (267)
 72 KOG1149 consensus               98.4 5.4E-05 1.4E-09   56.0  15.3  267   14-356    40-337 (524)
 73 PRK05347 glutaminyl-tRNA synth  98.3 3.2E-06 8.1E-11   65.1   8.4  100    5-123    27-126 (556)
 74 cd00807 Gln_GluRS_non_core Glu  98.3 2.9E-06 7.4E-11   65.4   7.5   92    9-120     3-94  (238)
 75 TIGR00463 gltX_arch glutamyl-t  98.3 6.4E-07 1.6E-11   70.2   3.5  278    8-358   102-412 (600)
 76 KOG1147 consensus               98.0   7E-05 1.8E-09   55.2   8.8   98    9-126   202-299 (712)
 77 cd00808 GluRS_core Descriminat  97.8 6.8E-05 1.7E-09   55.3   6.9   63   13-93      7-69  (239)
 78 cd07956 Anticodon_Ia_Arg Antic  97.7 0.00073 1.9E-08   47.6  10.0  119  318-442     1-125 (156)
 79 TIGR00467 lysS_arch lysyl-tRNA  97.6  0.0018 4.6E-08   44.8  11.1   87    6-93     20-125 (539)
 80 KOG1148 consensus               97.3 0.00094 2.4E-08   46.9   7.1   95    8-122   249-343 (764)
 81 KOG4426 consensus               97.2  0.0064 1.6E-07   40.7  10.2   53    4-56    187-239 (656)
 82 PRK08560 tyrosyl-tRNA syntheta  97.1  0.0034 8.6E-08   42.7   7.6   77    2-92     26-103 (333)
 83 PRK12284 tryptophanyl-tRNA syn  97.0  0.0064 1.6E-07   40.7   8.6   91   16-118    11-104 (436)
 84 PRK12285 tryptophanyl-tRNA syn  97.0   0.012 2.9E-07   38.8   9.8   79    2-92     62-140 (369)
 85 cd02156 nt_trans nt_trans (nuc  97.0 0.00027 6.9E-09   50.9   1.4   45   13-63      3-47  (147)
 86 KOG1195 consensus               97.0   0.014 3.6E-07   38.1   9.9  146  278-430   345-527 (567)
 87 COG0180 TrpS Tryptophanyl-tRNA  96.8   0.019 4.7E-07   37.3   9.7   95    2-109     2-100 (314)
 88 cd00806 TrpRS_core Tryptophany  96.8  0.0073 1.9E-07   40.3   7.3   78   16-105     9-89  (282)
 89 TIGR00440 glnS glutaminyl-tRNA  96.7  0.0018 4.6E-08   44.8   3.8   90   13-122     6-96  (564)
 90 cd00805 TyrRS_core Tyrosinyl-t  96.6 0.00081 2.1E-08   47.3   1.6   71   16-92      9-83  (268)
 91 PRK12556 tryptophanyl-tRNA syn  96.6   0.038 9.6E-07   35.0   9.7   91    1-106     1-93  (328)
 92 TIGR00233 trpS tryptophanyl-tR  96.5   0.029 7.3E-07   35.9   8.5   93    5-109     2-103 (366)
 93 PRK13354 tyrosyl-tRNA syntheta  96.3  0.0015 3.9E-08   45.3   1.4   75    6-87     39-115 (405)
 94 PRK12283 tryptophanyl-tRNA syn  96.3    0.07 1.8E-06   33.0   9.6   86    8-107     5-93  (398)
 95 PRK12282 tryptophanyl-tRNA syn  96.1   0.074 1.9E-06   32.8   9.2   88    5-106     2-92  (333)
 96 cd00395 Tyr_Trp_RS_core Tyrosi  95.9   0.028 7.2E-07   35.9   6.1   66   16-92      9-74  (274)
 97 pfam00579 tRNA-synt_1b tRNA sy  95.9  0.0046 1.2E-07   41.8   2.0   53  258-318   150-214 (291)
 98 PRK12282 tryptophanyl-tRNA syn  95.4    0.15 3.9E-06   30.5   8.5   35  439-480   296-330 (333)
 99 pfam01927 DUF82 Protein of unk  95.2   0.047 1.2E-06   34.3   5.3   34   33-68     11-44  (146)
100 PRK12284 tryptophanyl-tRNA syn  95.1    0.22 5.5E-06   29.4   8.5   32  284-315   181-215 (436)
101 PRK00927 tryptophanyl-tRNA syn  95.1    0.26 6.7E-06   28.8   8.9   78   16-106     9-89  (325)
102 COG1656 Uncharacterized conser  95.0    0.11 2.8E-06   31.6   6.6   88   33-134    17-105 (165)
103 cd00395 Tyr_Trp_RS_core Tyrosi  94.7   0.017 4.3E-07   37.6   1.9   69  258-333   142-214 (274)
104 cd00805 TyrRS_core Tyrosinyl-t  94.4    0.12   3E-06   31.3   5.7   47  258-312   151-204 (268)
105 PRK12283 tryptophanyl-tRNA syn  94.4    0.41   1E-05   27.4   8.3   29  297-330   259-287 (398)
106 pfam00579 tRNA-synt_1b tRNA sy  94.1   0.092 2.4E-06   32.1   4.6   42    5-52      4-46  (291)
107 cd00806 TrpRS_core Tryptophany  94.1   0.021 5.3E-07   36.9   1.2   57  258-315   139-206 (282)
108 PRK00927 tryptophanyl-tRNA syn  93.9    0.42 1.1E-05   27.3   7.6   33  284-316   169-209 (325)
109 PRK05912 tyrosyl-tRNA syntheta  93.8    0.03 7.7E-07   35.7   1.6   75    6-87     34-110 (402)
110 COG0162 TyrS Tyrosyl-tRNA synt  93.7   0.031 7.9E-07   35.6   1.6   74    4-85     32-108 (401)
111 PRK12556 tryptophanyl-tRNA syn  93.7   0.022 5.5E-07   36.8   0.6   33  284-316   180-215 (328)
112 PRK13354 tyrosyl-tRNA syntheta  92.5    0.36 9.2E-06   27.7   5.5   52  257-315   185-243 (405)
113 COG0180 TrpS Tryptophanyl-tRNA  92.5   0.047 1.2E-06   34.3   0.9   35  284-318   177-215 (314)
114 PRK05912 tyrosyl-tRNA syntheta  92.2     0.4   1E-05   27.4   5.4   52  257-315   181-239 (402)
115 PRK08560 tyrosyl-tRNA syntheta  91.9   0.075 1.9E-06   32.8   1.4   60  257-318   169-237 (333)
116 COG0162 TyrS Tyrosyl-tRNA synt  90.8    0.71 1.8E-05   25.6   5.5   52  257-315   180-237 (401)
117 pfam05746 DALR_1 DALR anticodo  90.7     1.3 3.4E-05   23.6  11.5   57  383-442    30-86  (117)
118 cd00807 Gln_GluRS_non_core Glu  88.3    0.16 4.1E-06   30.4   0.6   69  278-347   141-225 (238)
119 pfam09190 DALR_2 DALR domain.   86.9     1.3 3.4E-05   23.5   4.6   30  401-430     2-32  (62)
120 cd00808 GluRS_core Descriminat  86.7    0.18 4.5E-06   30.1   0.0   69  278-348   138-210 (239)
121 smart00836 DALR_1 DALR anticod  85.6     2.7 6.8E-05   21.3  12.0   49  384-432    35-83  (122)
122 cd03802 GT1_AviGT4_like This f  84.4     2.3 5.9E-05   21.8   4.9   45    6-52      2-46  (335)
123 COG0751 GlyS Glycyl-tRNA synth  84.0     3.1   8E-05   20.8   7.6   85  362-449   584-671 (691)
124 PRK01233 glyS glycyl-tRNA synt  83.8     3.2 8.1E-05   20.8   7.8   64  384-450   605-668 (687)
125 cd02067 B12-binding B12 bindin  83.1     2.8 7.2E-05   21.1   4.9   73   16-118     7-79  (119)
126 PRK12285 tryptophanyl-tRNA syn  81.8    0.56 1.4E-05   26.3   0.9   66  262-329   210-280 (369)
127 smart00840 DALR_2 This DALR do  81.4     3.9 9.9E-05   20.1   5.2   28  401-428     2-30  (56)
128 PRK09620 hypothetical protein;  80.1     3.3 8.3E-05   20.7   4.3   48    4-51      3-52  (229)
129 PRK05818 DNA polymerase III su  79.0     2.3 5.8E-05   21.9   3.2  121  296-439    94-214 (262)
130 cd07963 Anticodon_Ia_Cys Antic  79.0     4.6 0.00012   19.6   6.1   34  396-429    33-67  (156)
131 cd02071 MM_CoA_mut_B12_BD meth  76.3     5.4 0.00014   19.1   4.6   64   31-118    16-79  (122)
132 KOG2144 consensus               75.8     1.1 2.9E-05   24.1   1.0   63  249-313   169-234 (360)
133 TIGR01825 gly_Cac_T_rel pyrido  75.5     5.7 0.00014   18.9   5.5   15   73-87     76-90  (392)
134 KOG2145 consensus               73.2     2.9 7.3E-05   21.1   2.5   47  283-329   257-306 (397)
135 pfam06940 DUF1287 Domain of un  73.0     2.7 6.8E-05   21.3   2.3   29   13-44     22-50  (164)
136 cd02070 corrinoid_protein_B12-  72.9     6.5 0.00017   18.5   6.1   34   56-89     14-48  (201)
137 PRK00726 murG N-acetylglucosam  72.6     6.5 0.00017   18.4   4.2   38    5-52      2-39  (359)
138 PRK02261 methylaspartate mutas  71.5     6.4 0.00016   18.5   3.9   82    3-118     2-83  (137)
139 PTZ00126 tyrosyl-tRNA syntheta  71.0     7.1 0.00018   18.2   9.9   75    4-92     82-158 (399)
140 cd02167 NMNAT_NadR The NMNAT d  70.2     5.1 0.00013   19.2   3.2   50   18-81      8-58  (157)
141 cd02072 Glm_B12_BD B12 binding  70.1     7.4 0.00019   18.1   4.0   65   30-118    15-79  (128)
142 pfam04127 DFP DNA / pantothena  69.9     7.5 0.00019   18.0   4.4   49    4-52      2-52  (197)
143 TIGR02407 ectoine_ectB diamino  69.0     3.5 8.8E-05   20.5   2.1   11  171-181    55-65  (413)
144 PRK06732 phosphopantothenate--  67.3     8.4 0.00022   17.6   4.4   46    6-51      2-49  (228)
145 COG1453 Predicted oxidoreducta  67.0     8.5 0.00022   17.6   6.5   27   69-95     88-115 (391)
146 TIGR03326 rubisco_III ribulose  65.2     9.2 0.00023   17.3   4.4   13   65-77     24-36  (412)
147 pfam03698 UPF0180 Uncharacteri  61.8     8.3 0.00021   17.7   2.9   47   34-80     13-79  (80)
148 KOG2713 consensus               61.5      11 0.00027   16.9   8.0   88    6-106    14-106 (347)
149 pfam05559 DUF763 Protein of un  61.4     8.4 0.00022   17.6   2.9   15   16-30      3-17  (319)
150 PRK03094 hypothetical protein;  61.3     6.7 0.00017   18.4   2.4   47   34-80     13-79  (80)
151 COG2046 MET3 ATP sulfurylase (  60.3     5.2 0.00013   19.2   1.7   11  467-477   367-377 (397)
152 cd03785 GT1_MurG MurG is an N-  59.7      11 0.00029   16.7   3.9   37    6-52      1-37  (350)
153 PRK10517 magnesium-transportin  57.8      12 0.00031   16.4   6.4   21  458-478   717-738 (900)
154 COG2185 Sbm Methylmalonyl-CoA   57.4      12 0.00032   16.4   5.5   82    3-118    11-92  (143)
155 pfam01134 GIDA Glucose inhibit  56.4     8.5 0.00022   17.6   2.2   22   23-49      8-29  (391)
156 TIGR02390 RNA_pol_rpoA1 DNA-di  56.0      13 0.00033   16.2   3.2   39  290-329   615-656 (901)
157 COG3911 Predicted ATPase [Gene  54.4      14 0.00035   16.1   4.1   18   35-52     26-43  (183)
158 PRK05429 gamma-glutamyl kinase  52.0      15 0.00038   15.8  10.3  109    1-120     5-135 (372)
159 TIGR01490 HAD-SF-IB-hyp1 HAD-s  51.2      15 0.00039   15.7   3.4   26  314-342   120-145 (204)
160 COG3110 Uncharacterized protei  50.8     6.7 0.00017   18.4   1.0   34  294-327    30-63  (216)
161 PRK09484 3-deoxy-D-manno-octul  49.5      16 0.00042   15.5   3.5   27   40-68     65-91  (186)
162 PRK00421 murC UDP-N-acetylmura  49.4      16 0.00042   15.5   3.0   34   34-70     24-57  (459)
163 PRK13475 ribulose bisphosphate  48.9      17 0.00042   15.5   6.0   41   35-79      5-48  (459)
164 pfam06948 consensus             48.7      17 0.00043   15.4   3.3   58   49-119    49-108 (112)
165 COG1778 Low specificity phosph  48.0      17 0.00044   15.4   4.6   85    6-92      9-100 (170)
166 PRK11890 phosphate acetyltrans  47.9      17 0.00044   15.3   2.7   87   29-118     9-96  (312)
167 TIGR01017 rpsD_bact ribosomal   47.4       7 0.00018   18.2   0.6   29  287-315   118-151 (217)
168 PRK12565 30S ribosomal protein  47.3     7.1 0.00018   18.2   0.6   30  287-316   106-140 (197)
169 pfam01515 PTA_PTB Phosphate ac  46.3      18 0.00046   15.2   5.0   92   32-125     5-99  (319)
170 COG1568 Predicted methyltransf  46.0      18 0.00047   15.1   3.1   53  104-156    49-103 (354)
171 PRK05579 bifunctional phosphop  44.9      19 0.00048   15.0   3.2   37    1-48      1-37  (392)
172 PRK01904 hypothetical protein;  44.4      14 0.00036   16.0   1.8   47  278-327    18-65  (217)
173 CHL00113 rps4 ribosomal protei  43.7       8  0.0002   17.8   0.4   30  286-315   106-140 (201)
174 TIGR02370 pyl_corrinoid methyl  43.0     7.6 0.00019   18.0   0.2   72  259-338    97-184 (201)
175 PRK03641 hypothetical protein;  42.6      15 0.00039   15.7   1.7   46  280-328    19-64  (220)
176 COG3286 Uncharacterized protei  42.4      21 0.00052   14.8   3.6   18  393-410   120-137 (204)
177 PRK08099 nicotinamide-nucleoti  42.4      21 0.00052   14.8   2.8   19   57-75      6-24  (411)
178 PRK05327 rpsD 30S ribosomal pr  42.0     8.6 0.00022   17.6   0.4   29  287-315   110-143 (201)
179 COG0317 SpoT Guanosine polypho  41.7      21 0.00054   14.7   2.8   13   66-78     83-95  (701)
180 pfam10009 DUF2252 Uncharacteri  41.4      21 0.00054   14.7   6.4   94   13-116    41-151 (383)
181 TIGR01819 F420_cofD LPPG:Fo 2-  41.3      12 0.00032   16.4   1.1   15  254-268   105-119 (359)
182 cd07018 S49_SppA_67K_type Sign  41.3      21 0.00055   14.6   3.7   11  312-322   121-131 (222)
183 KOG0517 consensus               40.6      22 0.00056   14.6   3.1   30  330-361   759-788 (2473)
184 pfam03185 CaKB Calcium-activat  40.3      11 0.00028   16.8   0.7   16  268-283   166-181 (201)
185 TIGR01316 gltA glutamate synth  39.6     4.9 0.00013   19.4  -1.2   45  283-327   187-235 (462)
186 TIGR01510 coaD_prev_kdtB pante  39.5      18 0.00047   15.1   1.8   61   18-94      9-71  (163)
187 TIGR01057 topA_arch DNA topois  39.2      23 0.00059   14.4   3.2   51   42-92     97-155 (637)
188 pfam05045 RgpF Rhamnan synthes  38.6      23  0.0006   14.4   3.9   17  156-172   185-201 (498)
189 PRK08655 prephenate dehydrogen  38.0      24 0.00061   14.3   3.7   36   30-68     12-47  (441)
190 PRK09549 mtnW 2,3-diketo-5-met  37.7      24 0.00061   14.3   5.9   33  292-325   262-298 (411)
191 TIGR03006 pepcterm_polyde poly  37.7      24 0.00062   14.3   3.4   55   58-118    11-74  (274)
192 PRK00168 coaD phosphopantethei  37.3      24  0.0006   14.3   2.0   27   18-51     11-37  (159)
193 pfam00797 Acetyltransf_2 N-ace  36.4      21 0.00054   14.7   1.7   13   76-88     52-64  (240)
194 pfam11062 DUF2863 Protein of u  35.9      13 0.00033   16.3   0.5   11  463-473   360-370 (398)
195 pfam10266 Strumpellin Heredita  35.5      26 0.00066   14.0   6.5   26   42-69    271-296 (1080)
196 PRK12496 hypothetical protein;  35.5      26 0.00066   14.0   4.1   28  127-159   130-157 (166)
197 cd02163 PPAT_a Phosphopantethe  34.9      26 0.00066   14.0   1.9   18   18-41      8-25  (152)
198 TIGR02930 vnfG_nitrog V-contai  34.9      26 0.00068   14.0   2.9   36  368-405    34-69  (109)
199 TIGR02294 nickel_nikA nickel A  34.8      22 0.00055   14.6   1.5   55  153-218   139-193 (513)
200 PRK13402 gamma-glutamyl kinase  34.3      27 0.00069   13.9   9.1  112    1-120     2-128 (363)
201 COG1415 Uncharacterized conser  34.2      27 0.00069   13.9   2.1   33  390-424   336-368 (373)
202 TIGR02701 shell_carb_anhy carb  34.0      24 0.00062   14.2   1.7   27   21-47     53-83  (463)
203 TIGR00373 TIGR00373 conserved   33.9      27  0.0007   13.8   4.8  107   49-159    12-142 (168)
204 PRK11823 DNA repair protein Ra  32.8      29 0.00073   13.7   4.0   29  290-318   210-239 (454)
205 TIGR02889 spore_YpeB germinati  32.4      29 0.00074   13.7   3.4   30  173-203   225-254 (465)
206 cd03784 GT1_Gtf_like This fami  32.3      29 0.00074   13.7   3.0   48    6-68      2-49  (401)
207 PRK10949 protease 4; Provision  32.2      29 0.00074   13.6   2.2   41   76-116   185-238 (618)
208 pfam03492 Methyltransf_7 SAM d  32.1      29 0.00075   13.6   7.1   17   98-114    27-43  (331)
209 KOG4284 consensus               31.8      30 0.00075   13.6   1.9   31   21-51    262-305 (980)
210 cd03817 GT1_UGDG_like This fam  31.6      30 0.00076   13.6   4.8   42    6-53      1-42  (374)
211 cd01947 Guanosine_kinase_like   31.6      30 0.00076   13.6   4.0   57   11-67     17-77  (265)
212 TIGR02884 spore_pdaA delta-lac  31.5      15 0.00039   15.7   0.3   44   74-120    49-92  (225)
213 TIGR01405 polC_Gram_pos DNA po  31.2      30 0.00077   13.5   2.1   34  125-158   716-755 (1264)
214 TIGR01522 ATPase-IIA2_Ca calci  30.8      31 0.00078   13.5   5.5   26  315-341   467-492 (856)
215 PRK04527 argininosuccinate syn  30.7      31 0.00078   13.5   7.6   86   31-117    16-110 (397)
216 TIGR02995 ectoine_ehuB ectoine  30.7      29 0.00074   13.7   1.6   34  187-227    58-93  (285)
217 cd03822 GT1_ecORF704_like This  30.7      31 0.00078   13.5   4.5   40    6-52      1-40  (366)
218 KOG0572 consensus               30.6      31 0.00079   13.5   4.5   79    3-92     87-169 (474)
219 COG0773 MurC UDP-N-acetylmuram  30.5      31 0.00079   13.5   2.7   36   31-69     20-55  (459)
220 PRK10872 relA GDP/GTP pyrophos  30.1      31  0.0008   13.4   3.6   31  384-414   470-505 (743)
221 PRK10132 hypothetical protein;  30.0      32 0.00081   13.4   5.7   50  384-436    40-89  (108)
222 TIGR02015 BchY chlorophyllide   29.9      32 0.00081   13.4   1.9   33  381-413   325-363 (426)
223 PRK08271 anaerobic ribonucleos  29.8      32 0.00081   13.4   3.0   14  110-123    96-109 (625)
224 pfam08673 RsbU_N Phosphoserine  29.4      32 0.00082   13.3   4.1   45   31-81      5-49  (77)
225 COG4352 RPL13 Ribosomal protei  29.0      33 0.00083   13.3   3.3   36   85-120    77-112 (113)
226 KOG2623 consensus               28.8      33 0.00084   13.3   6.0   22  295-316   265-287 (467)
227 COG4889 Predicted helicase [Ge  28.7      33 0.00084   13.2   1.8   72   34-110   272-345 (1518)
228 COG0474 MgtA Cation transport   28.7      33 0.00084   13.2   5.3   11  463-473   727-737 (917)
229 COG5270 PUA domain (predicted   28.6      17 0.00044   15.3   0.2   36  114-158     2-37  (202)
230 pfam11243 DUF3045 Protein of u  28.2      34 0.00086   13.2   1.8   27   98-124    27-54  (90)
231 TIGR01511 ATPase-IB1_Cu copper  28.2      34 0.00086   13.2   4.8   10  228-237   205-214 (545)
232 TIGR01027 proB glutamate 5-kin  27.8      34 0.00088   13.1   8.0  103   10-120     9-131 (379)
233 PRK05192 tRNA uridine 5-carbox  27.7      34 0.00088   13.1   2.8   18  311-328   411-428 (621)
234 KOG2384 consensus               27.1      35  0.0009   13.0   3.6   27   41-67     32-58  (223)
235 COG1819 Glycosyl transferases,  27.0      35  0.0009   13.0   4.1   39    4-52      1-39  (406)
236 KOG0780 consensus               26.8      36 0.00091   13.0   4.9   30   58-88     35-64  (483)
237 cd03450 NodN NodN (nodulation   26.6      12  0.0003   16.6  -1.0   60  286-348    53-115 (149)
238 pfam09176 Mpt_N Methylene-tetr  26.3      22 0.00056   14.5   0.4   39   14-54     17-55  (81)
239 TIGR02967 guan_deamin guanine   26.2      28 0.00071   13.8   0.9   23  191-214   167-191 (426)
240 cd01095 Nitrilotriacetate_mono  26.1      37 0.00093   12.9   1.9   22  188-209    95-118 (358)
241 TIGR03332 salvage_mtnW 2,3-dik  26.0      37 0.00094   12.9   5.2   25  302-326   270-298 (407)
242 TIGR00108 eRF peptide chain re  26.0      30 0.00076   13.6   1.0   22  294-315   145-168 (425)
243 COG5200 LUC7 U1 snRNP componen  25.9      37 0.00094   12.9   2.2   24  299-326    48-71  (258)
244 TIGR03528 2_3_DAP_am_ly diamin  25.6      37 0.00095   12.9   1.6   14  470-483   360-373 (396)
245 cd03821 GT1_Bme6_like This fam  25.6      37 0.00095   12.9   4.5   41    6-52      1-41  (375)
246 PRK12446 N-acetylglucosaminyl   25.3      38 0.00096   12.8   2.9   38    5-52      2-39  (352)
247 TIGR02295 HpaD 3,4-dihydroxyph  25.2      28 0.00071   13.8   0.7   47  285-349   244-295 (312)
248 pfam00998 RdRP_3 Viral RNA dep  25.2      38 0.00097   12.8   2.8   18  298-315   263-284 (485)
249 TIGR02058 lin0512_fam conserve  25.0      33 0.00085   13.2   1.1   16   49-64      9-24  (120)
250 COG1066 Sms Predicted ATP-depe  25.0      38 0.00098   12.8   4.8   68   18-90    100-170 (456)
251 TIGR03612 RutA pyrimidine util  24.9      30 0.00078   13.5   0.9   16  188-203    93-110 (355)
252 cd03794 GT1_wbuB_like This fam  24.8      38 0.00098   12.8   4.5   43    6-54      1-43  (394)
253 pfam09363 XFP_C XFP C-terminal  24.6      35  0.0009   13.0   1.2   48  270-330   106-155 (203)
254 PRK08942 D,D-heptose 1,7-bisph  24.6      39 0.00099   12.7   4.6   52   32-93     36-87  (181)
255 cd02172 RfaE_N RfaE is a prote  24.3      39   0.001   12.7   3.1   41    2-53      1-42  (143)
256 COG2176 PolC DNA polymerase II  24.3      39   0.001   12.7   2.0   33  125-157   913-949 (1444)
257 PRK06526 transposase; Provisio  24.2      39   0.001   12.7   5.4   51   32-90      6-65  (254)
258 COG1850 RbcL Ribulose 1,5-bisp  24.2      40   0.001   12.7   4.9   14   65-78     32-45  (429)
259 COG0522 RpsD Ribosomal protein  24.0      25 0.00064   14.1   0.3   34  288-328   113-146 (205)
260 cd01302 Cyclic_amidohydrolases  24.0      35 0.00089   13.1   1.0   32  311-342   267-301 (337)
261 cd01121 Sms Sms (bacterial rad  23.5      41   0.001   12.6   3.3   38  290-327   203-241 (372)
262 PRK12314 gamma-glutamyl kinase  23.4      41   0.001   12.6   8.2  113    1-120     6-136 (265)
263 COG3980 spsG Spore coat polysa  23.4      41   0.001   12.6   2.7   30   19-52     12-42  (318)
264 PRK08181 transposase; Validate  23.3      41   0.001   12.6   6.7   34   57-90     30-72  (269)
265 PRK09850 hypothetical protein;  23.2      41   0.001   12.5   4.6   68    1-68      1-82  (313)
266 COG4671 Predicted glycosyl tra  23.2      41   0.001   12.5   2.6   43    2-51      7-50  (400)
267 PRK06939 2-amino-3-ketobutyrat  23.0      42  0.0011   12.5   5.9   10  298-307   140-149 (395)
268 PRK09183 transposase/IS protei  22.9      42  0.0011   12.5   5.8   34   57-90     26-68  (258)
269 PRK05629 hypothetical protein;  22.8      42  0.0011   12.5   3.8   43  284-327   102-146 (331)
270 cd04962 GT1_like_5 This family  22.4      43  0.0011   12.4   4.4   38    6-52      2-39  (371)
271 smart00345 HTH_GNTR helix_turn  22.2      43  0.0011   12.4   2.9   25  104-128    35-59  (60)
272 cd03796 GT1_PIG-A_like This fa  22.1      43  0.0011   12.4   4.3   40    6-51      1-40  (398)
273 cd03795 GT1_like_4 This family  22.0      43  0.0011   12.4   4.6   41    6-52      1-41  (357)
274 PRK13964 coaD phosphopantethei  21.9      44  0.0011   12.4   1.9   20   18-43     11-30  (140)
275 PRK11367 hypothetical protein;  21.7      37 0.00094   12.9   0.8   18   72-89     35-52  (476)
276 PRK05664 threonine-phosphate d  21.4      43  0.0011   12.4   1.1   25   53-77      3-27  (330)
277 COG3917 NahD 2-hydroxychromene  21.2      29 0.00074   13.7   0.2   23  220-242     2-26  (203)
278 TIGR00644 recJ single-stranded  21.1      45  0.0012   12.2   4.6   65   27-91     68-141 (705)
279 cd01945 ribokinase_group_B Rib  21.0      45  0.0012   12.2   3.6   58   11-68     17-78  (284)
280 smart00775 LNS2 LNS2 domain. T  21.0      45  0.0012   12.2   1.9   11  108-118    34-44  (157)
281 cd06217 FNR_iron_sulfur_bindin  20.9      46  0.0012   12.2   2.7   12  472-483   218-229 (235)
282 pfam01467 CTP_transf_2 Cytidyl  20.9      46  0.0012   12.2   3.1   27   18-50      7-34  (148)
283 pfam10929 DUF2811 Protein of u  20.9      19  0.0005   14.9  -0.8   11  201-211    40-50  (57)
284 PRK00448 polC DNA polymerase I  20.9      46  0.0012   12.2   2.4   32  126-157   907-942 (1436)
285 KOG0743 consensus               20.8      46  0.0012   12.2   3.2   32  390-421   398-431 (457)
286 pfam01135 PCMT Protein-L-isoas  20.7      46  0.0012   12.2   3.1   11  109-119     6-16  (205)
287 pfam06354 consensus             20.3      47  0.0012   12.1   3.3   23   48-70     60-82  (429)
288 cd03808 GT1_cap1E_like This fa  20.3      47  0.0012   12.1   2.8   25   30-54     15-39  (359)
289 cd01174 ribokinase Ribokinase   20.2      47  0.0012   12.1   3.7   35   35-69     43-79  (292)
290 cd01172 RfaE_like RfaE encodes  20.0      47  0.0012   12.1   3.7   37   33-69     44-82  (304)

No 1  
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1123.32  Aligned_cols=503  Identities=46%  Similarity=0.867  Sum_probs=481.7

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             88179978889999883222478978999999998858980362364370227999999983999899999999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM   83 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~   83 (511)
                      +|||+||||+|||||+||||||++++++||++||+||+|++|+|+||+|+||+||+++|+++|++|+|+|+++++.|+++
T Consensus         3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~g~tP~e~~d~~~~~~~~~   82 (644)
T PRK12267          3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEAGITPQEYVDEISAGFKDL   82 (644)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99989968998889985545348789999999999846997598487687529999999985999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCC
Q ss_conf             99808898867477888899999999888754310221100010113343015566721112222222233200003454
Q gi|255764461|r   84 ADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEE  163 (511)
Q Consensus        84 ~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~  163 (511)
                      |+++||++|.|+||++++|++.||++|++|+++|+||+++++|+||+.|++|++++++..   +..|..||+|+++++++
T Consensus        83 ~~~l~Is~D~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d---~g~cp~cg~~~e~~~ee  159 (644)
T PRK12267         83 WDKLDISYDKFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVD---GGKCPDSGHEVELVKEE  159 (644)
T ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCC---CCCCCCCCCCCEEECCC
T ss_conf             998699678785489889999999999999988997866551232587543336244045---78687789976464056


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             4344666444443444333321000676545775-410345675323433377765786422214646024443220012
Q gi|255764461|r  164 GYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTT  242 (511)
Q Consensus       164 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~-~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~  242 (511)
                      ||||+|++|+++|.+|++++++++.|..++|++. +|+++||+||||||++++||||||++|+||+||||||++||+|+.
T Consensus       160 ~yffkL~~~~~~L~~~~~~~p~~i~p~~~~ne~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Yisa~  239 (644)
T PRK12267        160 SYFFRMSKYADRLLEFYEENPDFIQPESRKNEMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNYITAL  239 (644)
T ss_pred             CEEEEHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
T ss_conf             51443466789999999609974676258879999998577855430247788888578987607998422430034341


Q ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCC
Q ss_conf             34676543100024110000456432100010247765433101232333430330586010000022111000000221
Q gi|255764461|r  243 GYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGV  322 (511)
Q Consensus       243 ~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~  322 (511)
                      +|..+....+.+|||.++||+||||++||+++|||||+++|+++|++|++|||++.+|+|||||+||+|+|.+++++||+
T Consensus       240 g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i~wpamL~~~~~~~p~~v~~hg~~~~~g~KmSKS~Gn~i~~~~~~~~~g~  319 (644)
T PRK12267        240 GYGSDDDELFMKFWPADVHLVGKDILRFHAIYWPIMLMALDLPLPKHLFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGL  319 (644)
T ss_pred             CCCCCCCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCEEECCCCEECCCCCCEECHHHHHHHCCC
T ss_conf             38621226677637313302685532366889999999769998644510441871786005536842237999875594


Q ss_pred             CCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             11211100002478730111222111001332110221021345565312332103455589556566789999999999
Q gi|255764461|r  323 DALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIR  402 (511)
Q Consensus       323 D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~  402 (511)
                      |++||||++..|+++|.+|||++|++|+|+||+|++|||+||+++|+.|+|+|.+|......+.|..++..+.++.+++.
T Consensus       320 D~lRyyl~~~~~~~~D~dfs~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~  399 (644)
T PRK12267        320 DALRYYLLREVPFGSDGDFSPEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYE  399 (644)
T ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             04364644448878777789999999988998877778999999998875188678887787456999999999999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC--CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             8775035899999999999999788654187012169--99999999999999999999985432248999999984988
Q gi|255764461|r  403 ENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKT--NPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA  480 (511)
Q Consensus       403 ~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~--d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~  480 (511)
                      ++|++++|++|+++||++++.+|+|++.++||+|+|+  +++++++||+++++++|.+++||+||||.+|++||++||++
T Consensus       400 ~~~~~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~  479 (644)
T PRK12267        400 EAMEALQFSRALEELWKLISRANKYIDETAPWVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLE  479 (644)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf             99971269999999999999999988857887663686629999999999999999999970683657999999981999


Q ss_pred             CCCCCHHHHCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             00079555101--2689973368777643234
Q gi|255764461|r  481 DENRCFQSLDQ--RLKPGFMLHKTFDPIFPRF  510 (511)
Q Consensus       481 ~~~~~~~~~~~--~l~~~~~i~~~~epLF~Ri  510 (511)
                      .....|+++..  .+.+|+.+.+ ++|||+||
T Consensus       480 ~~~~~~~~~~~~~~l~~g~~i~~-~~~LF~ri  510 (644)
T PRK12267        480 IELTSWESLLAFGGLPAGTKVAK-GEPLFPRL  510 (644)
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCC-CCCCCCCC
T ss_conf             75466455444256889982688-88786754


No 2  
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1103.69  Aligned_cols=495  Identities=28%  Similarity=0.536  Sum_probs=460.1

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             81799788899998832224789789999999988589803623643702279999999839998999999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA   84 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   84 (511)
                      ||||||||+|||||+||||||++|+++|+++||+||+|++|+|+||||+||+||+++|+++|++|+|+|++|++.|+++|
T Consensus         2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~~g~tp~e~~d~~~~~~~~~~   81 (666)
T PRK00133          2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF   81 (666)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             87798179878889843124676999999999998369954984742788489999999859999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC--------CCCCCCC----
Q ss_conf             9808898867477888899999999888754310221100010113343015566721112--------2222222----
Q gi|255764461|r   85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA--------DGQYYNA----  152 (511)
Q Consensus        85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~--------~~~~~~~----  152 (511)
                      +++||++|.|+||++++|++.||++|.+|+++|+||+++++|+||+.|++||+|++|.+.|        .|..|+.    
T Consensus        82 ~~l~Is~D~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V~GtCP~C~~~~~~GD~Ce~cG~~  161 (666)
T PRK00133         82 AGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT  161 (666)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCC
T ss_conf             98399578785789889999999999999978998974035556687565525423420257778712048742245651


Q ss_pred             -------------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -------------3320000345443446664444434443333210006765457754103456753234333777657
Q gi|255764461|r  153 -------------QHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIK  219 (511)
Q Consensus       153 -------------~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGip  219 (511)
                                   ||+|+++++++||||+|++|+++|++|+++++   +|.++++++.+|+++||+||||||+..|||||
T Consensus       162 ~~p~eL~~p~~~~~g~~~e~~~~e~~ff~Ls~~~~~L~~~~~~~~---~~~~~~n~~~~~l~~gL~D~~ISR~~~W~Gip  238 (666)
T PRK00133        162 YSPTELINPKSAISGATPVLKESEHFFFKLPDFEEFLKEWTRSGA---LQPNVANKMKEWLEEGLQDWDISRDAPYFGFE  238 (666)
T ss_pred             CCCHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHCCCCCCCEEEECCCCCEE
T ss_conf             673442386434579851660353333138777789987510488---98789999999985788775304027844458


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCCC-----HHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             86422214646024443220012346765-43100024110-----0004564321000102477654331012323334
Q gi|255764461|r  220 IPDDPQYIMYVWIDALTNYLTTTGYLDNP-DGSKAKFWPAD-----LHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSH  293 (511)
Q Consensus       220 iP~~~~~~~YVWfDa~~gY~s~~~~~~~~-~~~~~~~w~~d-----~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~  293 (511)
                      ||++++||+|||||||+||+|++..+++. ...+..|||.|     +|||||||++||+|+|||||+++|+++|++|++|
T Consensus       239 vP~~~~kv~YVW~DA~igYis~t~~~~~~~~~~~~~~W~~d~~~~~vhfiGKDii~FH~i~wPa~L~~~g~~lP~~v~~h  318 (666)
T PRK00133        239 IPGAPGKVFYVWLDAPIGYISSTKNLCDKRGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAH  318 (666)
T ss_pred             CCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             88987648999615645377764433143565587638899876336753443114647679999984677888612114


Q ss_pred             CCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCC-CCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf             3033058601000002211100000022111211100002478-730111222111001332110221021345565312
Q gi|255764461|r  294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACG-KDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKD  372 (511)
Q Consensus       294 g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~-~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~  372 (511)
                      |||+.+|+|||||+||+|+|.+++++||+|++||||++..|.+ +|++|||++|++++|+||+|++|||+||+++|+.|+
T Consensus       319 g~l~~~G~KmSKS~Gnvv~p~~~l~~yg~D~lRY~l~~~~p~~~~D~dfs~~~~~~r~NsdLan~lGNl~~R~~~~~~k~  398 (666)
T PRK00133        319 GFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPSRIDDIDFNWEDFQQRVNSDLVGKLVNFASRAAGFINKR  398 (666)
T ss_pred             CCEEECCEEEECCCCEEEEHHHHHHHCCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             64877880600126717617999986696453020331078987677869999999986888876668999999999986


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH--HHHHHHH
Q ss_conf             33210345558955656678999999999987750358999999999999997886541870121699999--9999999
Q gi|255764461|r  373 YDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDR--ASTVLYV  450 (511)
Q Consensus       373 ~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~--~~~vl~~  450 (511)
                      |+|.+|..    ..|..++..+.++.+++.++|++++|++|++.||++++.+|+||+.++||+|+|+++++  +.+|||+
T Consensus       399 ~~g~vp~~----~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~~~NkYi~~~~PW~L~K~d~~~~~l~~Vl~~  474 (666)
T PRK00133        399 FDGKLPDE----LADPELLEEFRAAAESIAEAYEAREFRKALREIMALADRANKYVDDKEPWKLAKQEGEDAALQEVCSV  474 (666)
T ss_pred             CCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHH
T ss_conf             59978997----45899999999999999999981069999999999999998887744876553685668999999999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999985432248999999984988000795551012689973368777643234
Q gi|255764461|r  451 TVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHKTFDPIFPRF  510 (511)
Q Consensus       451 ~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~~l~~~~~i~~~~epLF~Ri  510 (511)
                      +++++|.+++||+||||.+|++||++||+++  ..|+++... .+|+.+.+ ++|||+||
T Consensus       475 ~le~lr~laiLL~PfmP~~a~ki~~~Lg~~~--~~~~~~~~~-~~g~~i~~-~~pLF~ri  530 (666)
T PRK00133        475 GLNLFRALAIYLKPVLPELAERAEAFLNVEE--LTWDDAGQP-LLGHKINK-FKILFTRI  530 (666)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--CCHHHHCCC-CCCCCCCC-CCCCCCCC
T ss_conf             9999999999723867378999999809896--785674577-78987688-77786756


No 3  
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=1105.45  Aligned_cols=509  Identities=46%  Similarity=0.854  Sum_probs=477.1

Q ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             98888179978889999883222478978999999998858980362364370227999999983999899999999999
Q gi|255764461|r    1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         1 m~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      |+.++||+||||+|||||+|||||+.++|+|||++||+||+|++|+|+||||+||+||+++|+++|++|+|+|++|++.|
T Consensus         1 ~~~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~   80 (558)
T COG0143           1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEF   80 (558)
T ss_pred             CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99787389955898899986413678887899999999826975899951478777889999985999899999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC--------CCCCCC
Q ss_conf             999998088988674778888999999998887543102211000101133430155667211122--------222222
Q gi|255764461|r   81 RDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD--------GQYYNA  152 (511)
Q Consensus        81 ~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~--------~~~~~~  152 (511)
                      +++++++||+||.|+||++++|++.||++|.+|+++|+||+++++|+||+.|++|++|++|.+.|+        |..|+.
T Consensus        81 ~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~a~GD~Ce~  160 (558)
T COG0143          81 KELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCEN  160 (558)
T ss_pred             HHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCHHHH
T ss_conf             99999809854300168977799999999999997898731443564735435645621020558986753457643432


Q ss_pred             CC---------CCEECC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             33---------200003--------4544344666444443444333321000676545775410345675323433377
Q gi|255764461|r  153 QH---------NPVQWM--------EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFD  215 (511)
Q Consensus       153 ~~---------~p~~~~--------~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~  215 (511)
                      ||         +|++.+        +++||||+|++|+++|++|+++++.+++|.++++++.+|+++||+||||||++++
T Consensus       161 Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~  240 (558)
T COG0143         161 CGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLD  240 (558)
T ss_pred             CCCCCCCHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf             26757921217981686479764335405998879869999999973965458868999999999766866431458988


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC--CCCCCCCCCCCCC----HHCCCCCCCCHHCCHHHHHHHHHHHHCCCC
Q ss_conf             7657864222146460244432200123467--6543100024110----000456432100010247765433101232
Q gi|255764461|r  216 WGIKIPDDPQYIMYVWIDALTNYLTTTGYLD--NPDGSKAKFWPAD----LHVIGKDILRFHAIYWPAFLLSANLPLPKK  289 (511)
Q Consensus       216 WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~--~~~~~~~~~w~~d----~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~  289 (511)
                      ||||||++|+||||||||||+||||++++++  .....+.+||+.+    +|||||||++||||+||||||++|+++|++
T Consensus       241 WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~  320 (558)
T COG0143         241 WGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTR  320 (558)
T ss_pred             CCCCCCCCCCCEEEEEECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCE
T ss_conf             77257999987799963448899999541210587678986377888459999624567432457899997389998877


Q ss_pred             CCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf             33343033058601000002211100000022111211100002478730111222111001332110221021345565
Q gi|255764461|r  290 VFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMI  369 (511)
Q Consensus       290 i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~  369 (511)
                      |++||||+++|+||||||||+|||.++++.||+|++||||++.+|+++|++||+++|++++|++|+|++|||+||+++|+
T Consensus       321 i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi  400 (558)
T COG0143         321 IFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFI  400 (558)
T ss_pred             EEEEEEEEECCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98401399779412442881871799998748238579888737788888889999999998998878889999999999


Q ss_pred             HHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC-HHHHHHH
Q ss_conf             3123321034555-8955656678999999999987750358999999999999997886541870121699-9999999
Q gi|255764461|r  370 LKDYDGMIPTPGA-FTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTN-PDRASTV  447 (511)
Q Consensus       370 ~k~~~g~ip~~~~-~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d-~~~~~~v  447 (511)
                      .|+|+|++|.... ..+.|+.+++.+.++.+.+.++|++++|++|++.+|++++.+|+||+.++||+|+|++ +++++++
T Consensus       401 ~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~v  480 (558)
T COG0143         401 NKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATV  480 (558)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHH
T ss_conf             75259968865455534569999999999999999998625999999999999999887642898023204729999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC--CCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999985432248999999984988000--795551012689973368777643234
Q gi|255764461|r  448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVADEN--RCFQSLDQRLKPGFMLHKTFDPIFPRF  510 (511)
Q Consensus       448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~--~~~~~~~~~l~~~~~i~~~~epLF~Ri  510 (511)
                      |+++++++|.+++||+||||.+|++||++||.+...  .+|......+.+++.+.+ .+|||+||
T Consensus       481 l~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~lF~ri  544 (558)
T COG0143         481 LYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGHKLGP-PEPLFPRI  544 (558)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCC-CCCCCCCC
T ss_conf             99999999999998158686029999998288633210003442035677741687-66675646


No 4  
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1099.12  Aligned_cols=503  Identities=39%  Similarity=0.743  Sum_probs=456.3

Q ss_pred             EEEECCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH
Q ss_conf             79978889999883222478-978999999998858980362364370227999999983999-8999999999999999
Q gi|255764461|r    7 LYISTAIAYPNAQPHIGHAY-EMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT-TKVFVDQNSRNFRDMA   84 (511)
Q Consensus         7 ~~vt~~~Py~ng~lHlGH~~-~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~-p~e~~~~~~~~~~~~~   84 (511)
                      ++||||+|||||.+|||||+ ++|+|||++||+||+|++|+||||||+||+||+++|+++|+| |+++|++|++.|+++|
T Consensus         1 ~liTtpl~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~g~tqP~~~vd~~~~~f~~~~   80 (573)
T TIGR00398         1 ILITTPLPYANGKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTQPKELVDKYHEEFKKLW   80 (573)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             91005776678711210366777899999999852897478985134468788886987089964899999999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHH-----HHCCCC--------CCCCCC
Q ss_conf             9808898867477888899999999888754310221100010113343015566-----721112--------222222
Q gi|255764461|r   85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDD-----EVYKGA--------DGQYYN  151 (511)
Q Consensus        85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~-----~v~~~~--------~~~~~~  151 (511)
                      +.|||+||.|+||+|++|++.||++|++|.+||+||+++++|+|||.|++|++|+     ++.+.|        .|++|+
T Consensus        81 ~~lnI~fD~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP~c~~~~~~gd~c~  160 (573)
T TIGR00398        81 KWLNISFDRFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYVEGTCPKCGSEDARGDHCE  160 (573)
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             87284567654676888899999999998753774110035323475665362232001334674886887777787755


Q ss_pred             CCC---CCEECC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHH-HHHCCCCCCCCCCCCC
Q ss_conf             233---200003--------------45443446664444434443333210006-7654577-5410345675323433
Q gi|255764461|r  152 AQH---NPVQWM--------------EEEGYFFRLSAYQDKLLSYYESHPEFILP-IERRNEV-ISFVKSGLKDLSLSRK  212 (511)
Q Consensus       152 ~~~---~p~~~~--------------~~~~~f~~l~~~~~~l~~~~~~~~~~~~p-~~~~~~~-~~wl~~gl~Dw~ISR~  212 (511)
                      .||   +|++++              +++|+||+|++|+++|.+|++.++....+ +++++.+ .+|+++||+||||||+
T Consensus       161 ~Cg~~leP~~Li~P~c~~~~~~~~~~~~~hyFf~L~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~GL~D~~ItR~  240 (573)
T TIGR00398       161 VCGRHLEPFELINPRCVICKNKPELRDSEHYFFRLSAFEKELEEWIKKNPESKSPASNVKNVAKQNWIKGGLKDLAITRD  240 (573)
T ss_pred             CCCCCCCCCHHCCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECC
T ss_conf             46553685001187025548800251354522353688899999861488424218999999889985068743011036


Q ss_pred             CCC--CCCCCCCC--CCCCCCCCHHHHHHHHCCCCCCCCC---CCCCCCCCCCC------HHCCCCCCCCHHCCHHHHHH
Q ss_conf             377--76578642--2214646024443220012346765---43100024110------00045643210001024776
Q gi|255764461|r  213 TFD--WGIKIPDD--PQYIMYVWIDALTNYLTTTGYLDNP---DGSKAKFWPAD------LHVIGKDILRFHAIYWPAFL  279 (511)
Q Consensus       213 ~~~--WGipiP~~--~~~~~YVWfDa~~gY~s~~~~~~~~---~~~~~~~w~~d------~~~~G~Dii~Fh~i~~pa~l  279 (511)
                      ..+  ||||||.+  |+|||||||||||||||+++-++..   ...+.+||+.+      ||||||||++||||||||||
T Consensus       241 ~~~lkWG~pvP~~~~p~~~~YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~~~~~~~HfIGKDI~~FH~iyWPa~L  320 (573)
T TIGR00398       241 LVDLKWGIPVPNDGAPNKVVYVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNSEDAELIHFIGKDIVRFHTIYWPAML  320 (573)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             44121153178989879679987203456999975213356875789986268886502788842412020333445888


Q ss_pred             HHHH--HHCCCCCCCCCCEEECCCCCCHHHCCCCCCCC-HHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHH
Q ss_conf             5433--10123233343033058601000002211100-0000-221112111000024787301112221110013321
Q gi|255764461|r  280 LSAN--LPLPKKVFSHGFILHKGEKISKSLGNVIDPIE-VIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLA  355 (511)
Q Consensus       280 ~~~~--~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e-~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~  355 (511)
                      +|+|  +++|++|++||||++||+||||||||||+|.+ +++. ||+|.+||||+..+|.++|.+||+++|++|+|+||+
T Consensus       321 ~~~~eN~~lP~q~~~hGyl~~eG~KMSKS~G~vv~~~~~~~~~~~g~D~lRYYl~~~~~~~~D~~F~~~~f~~r~N~~L~  400 (573)
T TIGR00398       321 MGLGENLPLPTQVFAHGYLTVEGQKMSKSLGNVVDPEDDLLARGYGADILRYYLLKEVPLGKDGDFSWEDFVERVNADLA  400 (573)
T ss_pred             HHCCCHHHHHHHHEEEEEEEECCEEECCCCCCEECHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             51121002121324301688478443232475323217876447880578889986424344765688999999768877


Q ss_pred             HHHHHCCHHHHHHHHHCCCCCCCCCCC--------------CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             102210213455653123321034555--------------895565667899999999998775035899999999999
Q gi|255764461|r  356 NGIGNLVSRSVSMILKDYDGMIPTPGA--------------FTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV  421 (511)
Q Consensus       356 ~~lgN~~~R~~~f~~k~~~g~ip~~~~--------------~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~  421 (511)
                      |+||||+||++.|+.|+|+|+++....              +.+.|..++..+++..+++.+++++++|++|+++||+++
T Consensus       401 n~lGNl~nR~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~~Al~~~~~L~  480 (573)
T TIGR00398       401 NDLGNLLNRTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKINETLEQIDKALESFEFRKALEEILKLA  480 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65558999999999887356211010123456666503765223566899999999999999886203899999999999


Q ss_pred             HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHH--HCCCCCCC
Q ss_conf             99978865418701216999999999999999---99999998543224899999998498800079555--10126899
Q gi|255764461|r  422 SEVDRYFDAQKPWELKKTNPDRASTVLYVTVE---VIRQLAILLQAFVPKLANKIFDILFVADENRCFQS--LDQRLKPG  496 (511)
Q Consensus       422 ~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~---~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~--~~~~l~~~  496 (511)
                      +.+|+|||..+||++.|++ ++...+++++..   ++|.+++||+||||.+|++|.++||.+.+...+..  +.-....+
T Consensus       481 ~~gNkyi~~~~PW~l~k~~-~~~~~l~~~~~~~~e~~~~l~~Ll~P~~P~~~~k~~~~~n~~~~~~~~~~~~f~~~~~~~  559 (573)
T TIGR00398       481 DRGNKYIDDNEPWELAKQS-EKLKELLAVCSLVAELIRVLSILLYPFMPKLSEKILKLLNFELEFDNIRDSIFALKLLEG  559 (573)
T ss_pred             HHHHHHHHHCCCCEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf             9861476523887132570-679999999999999999999984241024789999983887013236777776556530


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             733687776432349
Q gi|255764461|r  497 FMLHKTFDPIFPRFL  511 (511)
Q Consensus       497 ~~i~~~~epLF~Ri~  511 (511)
                      +.+.+ .++||+||-
T Consensus       560 ~~~~~-~e~lf~k~~  573 (573)
T TIGR00398       560 HKLNK-AEPLFSKIE  573 (573)
T ss_pred             CCCCC-CCCCCCCCC
T ss_conf             00123-335423479


No 5  
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1047.78  Aligned_cols=505  Identities=53%  Similarity=0.983  Sum_probs=485.7

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             81799788899998832224789789999999988589803623643702279999999839998999999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA   84 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   84 (511)
                      |||+||+|||||||+||||||++|+++||++||+||+|++|+|+||+|+||+||+.+|+++|++|+|+|++|++.|++++
T Consensus         1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   80 (512)
T PRK11893          1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEAGISPQELADRNSASFKRLW   80 (512)
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             97899689998899734463587999999999999559970746871775199999999859999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC-CCCCCCCCCCEECCCCC
Q ss_conf             98088988674778888999999998887543102211000101133430155667211122-22222233200003454
Q gi|255764461|r   85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD-GQYYNAQHNPVQWMEEE  163 (511)
Q Consensus        85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~-~~~~~~~~~p~~~~~~~  163 (511)
                      +++||++|.|+||++++|.+.||++|.+|+++|+||+++++|+||+.|++|+.++++.++.. ...|..||+|+++++++
T Consensus        81 ~~l~i~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~  160 (512)
T PRK11893         81 EALNISYDDFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEEE  160 (512)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             98099888787799879999999999999767977432444322688644457777236657886555579977687247


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             43446664444434443333210006765457754103456753234333777657864222146460244432200123
Q gi|255764461|r  164 GYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTG  243 (511)
Q Consensus       164 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~  243 (511)
                      ||||+|++++++|+++++++++++.|..+++++.+|+++||+|||||||+++||||+|++|+||+||||||++||+|+++
T Consensus       161 ~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~~  240 (512)
T PRK11893        161 SYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTALG  240 (512)
T ss_pred             CCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC
T ss_conf             61120505467799997249865186999999999985778766152567878998888888620112531355677645


Q ss_pred             CCCC-CCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCC
Q ss_conf             4676-543100024110000456432100010247765433101232333430330586010000022111000000221
Q gi|255764461|r  244 YLDN-PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGV  322 (511)
Q Consensus       244 ~~~~-~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~  322 (511)
                      +... ....+.++||.++||+|+||++||+++|||||+++|+++|+++++||||++||+|||||+||+|+|.|++++||+
T Consensus       241 ~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~~~p~~~~~hg~l~~~G~KmSKS~Gn~I~~~d~l~~yg~  320 (512)
T PRK11893        241 YDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTNDGQKMSKSLGNVIDPFDLVDKFGV  320 (512)
T ss_pred             CCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCCCCCCHHHHHHHCCC
T ss_conf             88765647898448750432366512013888999998669998863431114887571501347875899999998595


Q ss_pred             CCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             11211100002478730111222111001332110221021345565312332103455589556566789999999999
Q gi|255764461|r  323 DALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIR  402 (511)
Q Consensus       323 D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~  402 (511)
                      |++||||++.+|+++|++||+++|++++|++|++++||+++|+.+|+.++++|.+|..+...+.|.+++++++++++++.
T Consensus       321 D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~  400 (512)
T PRK11893        321 DAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVR  400 (512)
T ss_pred             CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             04028776328877787878999998975899999999999999999875178788866588768999999999999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf             87750358999999999999997886541870121699999999999999999999998543224899999998498800
Q gi|255764461|r  403 ENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE  482 (511)
Q Consensus       403 ~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~  482 (511)
                      ++||+++|++|++.++++++.+|+|++..+||++.|++.++++++|++++++++.+++||+||||++|++||++||++++
T Consensus       401 ~~~e~~~~~~a~~~i~~~~~~~N~y~~~~~PW~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~~  480 (512)
T PRK11893        401 EAMDNFAFHKALEAILELAAEANKYIDEQAPWSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEED  480 (512)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf             99971259999999999999999998847875331589999999999999999999999858435999999998499987


Q ss_pred             CCCHHHHCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             079555101--2689973368777643234
Q gi|255764461|r  483 NRCFQSLDQ--RLKPGFMLHKTFDPIFPRF  510 (511)
Q Consensus       483 ~~~~~~~~~--~l~~~~~i~~~~epLF~Ri  510 (511)
                      .+.|.++..  .+++|+.+.+ ++|||+||
T Consensus       481 ~~~~~~~~~~~~l~~g~~i~~-~~~LF~ki  509 (512)
T PRK11893        481 PRDFADLLAWGRLAPGTPLPK-PEPVFPRI  509 (512)
T ss_pred             CCCHHHHHCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             688567300267999599899-88888875


No 6  
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=1041.61  Aligned_cols=502  Identities=32%  Similarity=0.585  Sum_probs=469.7

Q ss_pred             CEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             8179978889999883222478-978999999998858980362364370227999999983999899999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAY-EMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM   83 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~-~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~   83 (511)
                      +||+||||+|||||+|||||+. +|+++||++||+||+|++|+|+||+|+||+||+++|+++|++|+|+|+++++.++++
T Consensus         3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~   82 (558)
T PRK12268          3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKED   82 (558)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             51898479988889855231114198999999999837998797584064749999999985999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC--------CCC------
Q ss_conf             998088988674778888999999998887543102211000101133430155667211122--------222------
Q gi|255764461|r   84 ADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD--------GQY------  149 (511)
Q Consensus        84 ~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~--------~~~------  149 (511)
                      ++++||++|+|+||++|+|++.||++|.+|+++|+||+++++++||+.|++|++|++|.+.|.        |..      
T Consensus        83 ~~~lgis~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G~cP~c~~~~~~Gd~ce~cg~  162 (558)
T PRK12268         83 FEKLGISYDNYTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEKARGDQCDNCGA  162 (558)
T ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             99819837768668988999999999999998899330135343684112313123315406776874356732532476


Q ss_pred             -----------CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             -----------222332000034544344666444443444333321000676545775410345675323433377765
Q gi|255764461|r  150 -----------YNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGI  218 (511)
Q Consensus       150 -----------~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGi  218 (511)
                                 |..||+|+++++++||||+|++++++|++|+++++.  +|..+++.+.+||++||+|||||||+ +|||
T Consensus       163 ~~~~~dli~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~--~p~~~~~~~~~~l~~~l~D~~ISR~~-~WGi  239 (558)
T PRK12268        163 LLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIESGTD--WPPNVLNFTLNWLKEGLKPRAITRDL-PWGI  239 (558)
T ss_pred             CCCHHHHCCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCC-CCCE
T ss_conf             47857724885677899444773453021418778999999853887--78899999999986337565455538-7865


Q ss_pred             CCC--CCCCCCCCCCHHHHHHHHCCCCCCCCC---CCCCCCCCCCC----HHCCCCCCCCHHCCHHHHHHHHHH--HHCC
Q ss_conf             786--422214646024443220012346765---43100024110----000456432100010247765433--1012
Q gi|255764461|r  219 KIP--DDPQYIMYVWIDALTNYLTTTGYLDNP---DGSKAKFWPAD----LHVIGKDILRFHAIYWPAFLLSAN--LPLP  287 (511)
Q Consensus       219 piP--~~~~~~~YVWfDa~~gY~s~~~~~~~~---~~~~~~~w~~d----~~~~G~Dii~Fh~i~~pa~l~~~~--~~~p  287 (511)
                      |||  +.++|++||||||++||+++++.+...   ...+..||+.+    +||+||||++||+++|||||++.+  +++|
T Consensus       240 piP~~~~~~~~iyVW~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~GkDii~FH~v~wpa~l~a~~~~~~lP  319 (558)
T PRK12268        240 PIPFEGAEGKVFYVWFDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFIGKDNIPFHSVIWPAMLLGSGEPYKLP  319 (558)
T ss_pred             ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             78855568967988657872203433654541698567987278998427764366654347879999997337987788


Q ss_pred             CCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf             32333430330586010000022111000000221112111000024787301112221110013321102210213455
Q gi|255764461|r  288 KKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS  367 (511)
Q Consensus       288 ~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~  367 (511)
                      +++++|||++++|+|||||+||+|+|.|++++||+|++||||++.+++++|++||+++|++++|++|+|++|||++|+++
T Consensus       320 ~~i~~~g~~~~~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~  399 (558)
T PRK12268        320 TAIVSSEYLTYEGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLS  399 (558)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77877556874684114557887798999987490777899885488888888799999999999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH
Q ss_conf             65312332103455589556566789999999999877503589999999999999978865418701216999999999
Q gi|255764461|r  368 MILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTV  447 (511)
Q Consensus       368 f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~v  447 (511)
                      |+.++|+|.+|+.+.+++.|+++++++.+++++++++||+++|++|+++|+++++.+|+|++..+||++.|+++++++++
T Consensus       400 ~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~~~~N~y~~~~~PW~l~k~d~~~~~~v  479 (558)
T PRK12268        400 FIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELARLANKYLNEKAPWKLAKTDPERAAAV  479 (558)
T ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHH
T ss_conf             99986589789876798565999999999999999999751799999999999999999998379854316899999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999998543224899999998498800-0795551012689973368777643234
Q gi|255764461|r  448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE-NRCFQSLDQRLKPGFMLHKTFDPIFPRF  510 (511)
Q Consensus       448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~-~~~~~~~~~~l~~~~~i~~~~epLF~Ri  510 (511)
                      ++++++++|.+++||+||||++|++||++||++.. ..+|+.....+++|+.+.+ ++||||||
T Consensus       480 l~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~~~~~~~~w~~~~~~l~~g~~i~~-~~pLF~Ri  542 (558)
T PRK12268        480 LYTALNLVKLLAILLYPFLPFSAEKIWEMLGLPNIEKLSWEEAADPLEPGHSLNK-PEPLFRKI  542 (558)
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC-CCCCCCCC
T ss_conf             9999999999999986740399999999849997755551443156899599789-87685888


No 7  
>KOG0436 consensus
Probab=100.00  E-value=0  Score=844.71  Aligned_cols=506  Identities=40%  Similarity=0.718  Sum_probs=456.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             88179978889999883222478978999999998858980362364370227999999983999899999999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM   83 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~   83 (511)
                      -+++++|||+.|+|.++||||+++.+++|+++||+|++|..|+|.||||+||++|+.+|+.+|.+|.|+||+..+.|.++
T Consensus        38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL  117 (578)
T KOG0436          38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQL  117 (578)
T ss_pred             CCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             85059845513147885145799999999999998635880686037775442243368655999078886651999999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCC---CCCCCCCCEECC
Q ss_conf             99808898867477888899999999888754310221100010113343015566721112222---222233200003
Q gi|255764461|r   84 ADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQ---YYNAQHNPVQWM  160 (511)
Q Consensus        84 ~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~---~~~~~~~p~~~~  160 (511)
                      ++.+||+|+.|+||++|.|++.||++|..+..+|+||.++++||||+.||+|++++.|.+..+|.   ..-.+|+||.++
T Consensus       118 ~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~  197 (578)
T KOG0436         118 WKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWR  197 (578)
T ss_pred             HHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHHHCCCCCCCCEEEECCCCCEEEE
T ss_conf             99829633421224891089999999999986783652023516860530028788871388999854540468942676


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             454434466644444344433332100067654577541034567532343--337776578642221464602444322
Q gi|255764461|r  161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSR--KTFDWGIKIPDDPQYIMYVWIDALTNY  238 (511)
Q Consensus       161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR--~~~~WGipiP~~~~~~~YVWfDa~~gY  238 (511)
                      +|++|||+||+|+..|.+|+..+|.++.|+..++++++|++.||+|.+|||  +|++||||+|+++.|++||||||+++|
T Consensus       198 kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY  277 (578)
T KOG0436         198 KEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY  277 (578)
T ss_pred             CCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHH
T ss_conf             15650100875512899998449974676077889999997379865325703301348888999862698759988657


Q ss_pred             HCCCCCCC---CCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCC
Q ss_conf             00123467---654310002411000045643210001024776543310123233343033058601000002211100
Q gi|255764461|r  239 LTTTGYLD---NPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIE  315 (511)
Q Consensus       239 ~s~~~~~~---~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e  315 (511)
                      ||+.++..   +.++...-+||+.+|+|||||++||+|||||+|||+|+++|+.|++|||++.+|.|||||+||+|+|.+
T Consensus       278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~  357 (578)
T KOG0436         278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFE  357 (578)
T ss_pred             HHHHCCCCHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEECCHHHCCCCCHHH
T ss_conf             88606882102400015237875123201445664554518999866999861798841265422210212046468899


Q ss_pred             HHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHH--HHHHCC-CCCCCCCCCCCHHHHHHHH
Q ss_conf             0000221112111000024787301112221110013321102210213455--653123-3210345558955656678
Q gi|255764461|r  316 VIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS--MILKDY-DGMIPTPGAFTESDESILS  392 (511)
Q Consensus       316 ~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~--f~~k~~-~g~ip~~~~~~~~D~~ll~  392 (511)
                      ++++||+|++||||+..+..+.|.||+++++....|++|++++||++||+..  +.-++. .+.+-..-.....+..+..
T Consensus       358 l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~  437 (578)
T KOG0436         358 LVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVD  437 (578)
T ss_pred             HHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHCCCHHHH
T ss_conf             99883844156675553520788881299999999999999998998887521357001563002477425531452899


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC---HHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             999999999987750358999999999999997886541870121699---99999999999999999999854322489
Q gi|255764461|r  393 VCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTN---PDRASTVLYVTVEVIRQLAILLQAFVPKL  469 (511)
Q Consensus       393 ~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d---~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~  469 (511)
                      .++++++.+...++++++.+|++.+.++++.+|.|++..+||++-++.   .+.+..+++..++++|.++++|+|+||.+
T Consensus       438 ~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psl  517 (578)
T KOG0436         438 TVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSL  517 (578)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99975899985403330999999999999753156650687021114673689999999999999999999872356536


Q ss_pred             HHHHHHHCCCCCCCCCHHHHCCCC----------CCCCCCCCCCCCCCCC
Q ss_conf             999999849880007955510126----------8997336877764323
Q gi|255764461|r  470 ANKIFDILFVADENRCFQSLDQRL----------KPGFMLHKTFDPIFPR  509 (511)
Q Consensus       470 ae~i~~~Lg~~~~~~~~~~~~~~l----------~~~~~i~~~~epLF~R  509 (511)
                      |.+++++||++.+.++..++....          ..|..+.++-.++++|
T Consensus       518 s~~llsqlgvsk~qrsl~~~~~vf~~~~ygk~s~~kgr~v~~kt~~~~~~  567 (578)
T KOG0436         518 SLRLLSQLGVSKDQRSLITWSPVFAPIEYGKESDEKGRKVGKKTGKAKVK  567 (578)
T ss_pred             HHHHHHHCCCCHHHCCCCCCHHCCCCHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             79999870987433021010002672220677875566578434664344


No 8  
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=766.76  Aligned_cols=479  Identities=27%  Similarity=0.414  Sum_probs=410.9

Q ss_pred             CE--EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----C---CCC-------
Q ss_conf             81--7997888999988322247897899999999885898036236437022799999998----3---999-------
Q gi|255764461|r    5 EK--LYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----A---GVT-------   68 (511)
Q Consensus         5 ~~--~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~---g~~-------   68 (511)
                      ++  |.|.+||||++|.||||||.+.+..|+++||+||+||+|+|++|+|+||.+++++.++    +   |++       
T Consensus        35 ~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vLw~~G~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe  114 (970)
T TIGR00422        35 EPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLKAEEIKGKTKHDLGRE  114 (970)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             77751571782585555116689999999999985421787125788866576324689999987622578877878868


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHH
Q ss_conf             -----8999999999999999980889886747---78888999999998887543102211000101133430155667
Q gi|255764461|r   69 -----TKVFVDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDE  140 (511)
Q Consensus        69 -----p~e~~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~  140 (511)
                           +-|+.+++...|++++++||+|+| |.|   |.+|+..+.|+..|.+||++|+||++.+.+.|||+|++.+++.|
T Consensus       115 ~F~~~~~ewk~e~~~~I~~Q~~rLG~S~D-WsrE~FTmd~~l~~~V~~~Fv~LY~~GLIYRg~~lVNWdpk~~TAiSd~E  193 (970)
T TIGR00422       115 EFVEKIWEWKEESGGTIKNQIKRLGVSLD-WSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIE  193 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHH
T ss_conf             99999999998877999999998088502-35004544888888999999988554861543611372054463102333


Q ss_pred             H---CCCC------------------------------------------------------------------------
Q ss_conf             2---1112------------------------------------------------------------------------
Q gi|255764461|r  141 V---YKGA------------------------------------------------------------------------  145 (511)
Q Consensus       141 v---~~~~------------------------------------------------------------------------  145 (511)
                      |   ++..                                                                        
T Consensus       194 Venkeyker~~~~L~y~~Ypla~~~~~~~Gkd~l~vATTRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~ipii  273 (970)
T TIGR00422       194 VENKEYKERVKGKLYYIRYPLANGSKTADGKDYLVVATTRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKIPII  273 (970)
T ss_pred             HHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEEEEE
T ss_conf             32111312226654515654348875423552079972672256428288767897045785549889724567684376


Q ss_pred             -------------------------------------------------C--------------CC--------------
Q ss_conf             -------------------------------------------------2--------------22--------------
Q gi|255764461|r  146 -------------------------------------------------D--------------GQ--------------  148 (511)
Q Consensus       146 -------------------------------------------------~--------------~~--------------  148 (511)
                                                                       .              ++              
T Consensus       274 aDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH~LLe~i~~l~~dG~Lne~a~~~~tG~~~~Y~iP~~y~GL~~~eAR~kiv  353 (970)
T TIGR00422       274 ADEYVDMEFGTGAVKVTPAHDFNDYEVGKRHNLLEFINILDEDGLLNENAEVIDTGKEDVYAIPGEYQGLERFEARKKIV  353 (970)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCHHHCCEECCCCHHHHCCCCCCCCCEECEEECCCCCCCCCCHHCCCCCHHHHHHHHH
T ss_conf             17754624175127760874977600134121141433317997501100110077723310652205888899999999


Q ss_pred             --------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCC-C
Q ss_conf             --------------------222233200003454434466644444344433-332100067654577541034567-5
Q gi|255764461|r  149 --------------------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYE-SHPEFILPIERRNEVISFVKSGLK-D  206 (511)
Q Consensus       149 --------------------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~-~~~~~~~p~~~~~~~~~wl~~gl~-D  206 (511)
                                          +|+.||.|||..-++|||+++.++++.+.+.++ .+..-+.|+++.+.+.+||.+ |+ |
T Consensus       354 ~~L~~~glL~k~~p~~~~VG~c~Rsg~vvEP~ls~QWFV~~~~La~~a~~~~~~~g~~~fvP~~~~~~y~~W~~~-~~WD  432 (970)
T TIGR00422       354 EDLKEEGLLVKIEPHTHNVGHCERSGTVVEPLLSKQWFVKVEKLADKALEAAEEDGEIKFVPKRFEKRYLNWLRN-IRWD  432 (970)
T ss_pred             HHHHHCCCCCCCCEECCCCCEECCCCCEEECCCCCCCEECHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCC
T ss_conf             999866880011100034562147893430426998621717778999999854588336021678899999963-8888


Q ss_pred             CCCCCCCCCCCCCCCCC--------------------------------C----------------CCCCCCCHHHHHHH
Q ss_conf             32343337776578642--------------------------------2----------------21464602444322
Q gi|255764461|r  207 LSLSRKTFDWGIKIPDD--------------------------------P----------------QYIMYVWIDALTNY  238 (511)
Q Consensus       207 w~ISR~~~~WGipiP~~--------------------------------~----------------~~~~YVWfDa~~gY  238 (511)
                      ||||||+ +||+|||..                                +                .-|+++||++.+.+
T Consensus       433 WCISRQL-~WGH~IPvWY~~~E~~~~~~~~G~~~V~~~~~~~~~~~~~gp~~~c~~CG~~f~l~qd~DVLDTWFSS~LWP  511 (970)
T TIGR00422       433 WCISRQL-IWGHRIPVWYVEIEGEEDHKETGEVYVAKEEALPDSKTNTGPKEVCDKCGSVFELEQDEDVLDTWFSSSLWP  511 (970)
T ss_pred             CEEECCC-CCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf             1330102-026457667751357776764114774787764101101676876634587423434877545323234458


Q ss_pred             HCCCCCC----CCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HHHH----HH------HHCCCCCCCCCCEEE-CCCC
Q ss_conf             0012346----76543100024110000456432100010247-7654----33------101232333430330-5860
Q gi|255764461|r  239 LTTTGYL----DNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FLLS----AN------LPLPKKVFSHGFILH-KGEK  302 (511)
Q Consensus       239 ~s~~~~~----~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l~~----~~------~~~p~~i~~~g~l~~-~G~K  302 (511)
                      +|++||+    .+...+++.|+|+++.+.|+|||||    |.| |+|.    +|      ..|++.|++||+|-. +|+|
T Consensus       512 fs~lGWpqekG~~~~~D~~~fyPt~~L~TG~DIiFF----WV~RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRDeqG~K  587 (970)
T TIGR00422       512 FSTLGWPQEKGDETEKDLKKFYPTDLLVTGYDIIFF----WVARMILRSLALTGDENGKPQVPFKDVYIHGLVRDEQGRK  587 (970)
T ss_pred             HHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCCC
T ss_conf             874688644567766889733887656530368899----9999986215540135869887820258654455588851


Q ss_pred             CCHHHCCCCCCCCHHH-------------------------------------HCCCCCCCHHHEEECC-CCCCCEECCC
Q ss_conf             1000002211100000-------------------------------------0221112111000024-7873011122
Q gi|255764461|r  303 ISKSLGNVIDPIEVIE-------------------------------------EVGVDALRYFLVREIA-CGKDGFYDKD  344 (511)
Q Consensus       303 MSKS~GN~I~~~e~l~-------------------------------------~~g~D~lR~~l~~~~~-~~~D~~Fs~~  344 (511)
                      |||||||||+|.|+|+                                     +||+|+|||+|++... .|+|++|+++
T Consensus       588 MSKSlGNvIdP~d~I~GI~L~dL~~K~~~~~l~P~~~eK~~~~~~~~fpnGI~~YGaDALR~~La~~~~G~G~Di~f~~~  667 (970)
T TIGR00422       588 MSKSLGNVIDPLDVIEGISLDDLLEKRTGNMLQPQLAEKIKKGTKKSFPNGIPKYGADALRFTLASLVTGPGDDINFDWK  667 (970)
T ss_pred             CCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf             22205683476986068870789999745777835899987643210323200206038999998358678986421189


Q ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHHHCC---CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             21110013321102210213455653123---32103-455589556566789999999999877503589999999999
Q gi|255764461|r  345 GLKKRVNADLANGIGNLVSRSVSMILKDY---DGMIP-TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL  420 (511)
Q Consensus       345 ~~~~~~n~~L~~~lgN~~~R~~~f~~k~~---~g~ip-~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l  420 (511)
                      ++....|  ++||+|| ++|.+.|-....   ...++ .....+..|+|++++|+++++++++++|+|+|..|.+.|++|
T Consensus       668 ~v~~~~n--F~NKlWN-A~rF~l~~~~~~~~~~~~~~~~~~~~~l~drWILs~L~~~i~~v~~~ld~Y~F~~a~~~ly~F  744 (970)
T TIGR00422       668 RVESARN--FANKLWN-ASRFVLMNLSDDTQDELELSGGEEKLSLADRWILSKLNRTIKEVREALDKYRFNEAAKALYEF  744 (970)
T ss_pred             HHHHHHH--HHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8876767--7678899-999999600356676113577632013546999999999999999988403677887576521


Q ss_pred             H--HHHHHHHHHHCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCCCCHHHHCCCCC
Q ss_conf             9--9997886541870121699-9999999999999999999985432248999999984988-00079555101268
Q gi|255764461|r  421 V--SEVDRYFDAQKPWELKKTN-PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA-DENRCFQSLDQRLK  494 (511)
Q Consensus       421 ~--~~~N~yi~~~~PW~l~k~d-~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~-~~~~~~~~~~~~l~  494 (511)
                      +  ++||+||+..|+ .+..++ .++...+..++..+|..+.+||||||||+||+||+.|... .+++...+++....
T Consensus       745 ~W~dFCD~YIE~~K~-~~~~~~~~~~k~~A~~~L~~vLd~~l~LLhPf~PF~tE~iwq~~~~~~~~si~~~~yP~~~~  821 (970)
T TIGR00422       745 IWNDFCDWYIELVKY-RLYNGNDEAEKKAARDTLAYVLDKALRLLHPFMPFITEEIWQHLKEGEADSIMLQSYPEVDA  821 (970)
T ss_pred             HHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf             013451235442143-14789738999999999999999999985245522578999884361010422135765233


No 9  
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=100.00  E-value=0  Score=759.30  Aligned_cols=358  Identities=49%  Similarity=0.881  Sum_probs=337.5

Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             79978889999883222478978999999998858980362364370227999999983999899999999999999998
Q gi|255764461|r    7 LYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADV   86 (511)
Q Consensus         7 ~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~   86 (511)
                      |+||+|||||||+||||||++|+.+|+++||+||+||+|+|++|+|+||+||+.+|+++|++|+|+|++|+++++++|++
T Consensus         1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~g~~~~e~~~~y~~~~~~~~~~   80 (388)
T pfam09334         1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGVTPQELVDRYHEEFKELFKK   80 (388)
T ss_pred             CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98937898888860022418899999999999956997071386485379999999984999999999999999999998


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC-----------CCC-------
Q ss_conf             08898867477888899999999888754310221100010113343015566721112-----------222-------
Q gi|255764461|r   87 LDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA-----------DGQ-------  148 (511)
Q Consensus        87 ~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~-----------~~~-------  148 (511)
                      +||++|.|+||++++|.+.++++|++|+++|+||+++.+++|||.|++|++|+++.+.+           .|+       
T Consensus        81 lgi~~D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~~~~~~~~~~e~~G~~~e  160 (388)
T pfam09334        81 FNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLE  160 (388)
T ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             39967878657984689999999875140681553241122366666666533307545755750136641002388278


Q ss_pred             -------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -------2222332000034544344666444443444333321000676545775410345675323433377765786
Q gi|255764461|r  149 -------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIP  221 (511)
Q Consensus       149 -------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP  221 (511)
                             .|..|+.|++.+.++||||++++++++|++|+++++.. +|...++.+.+|++++|+|||||||+ +||+|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl~~~l~Dw~ISR~~-~WG~~iP  238 (388)
T pfam09334       161 PTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDE-PPSNVNEVVLSWLKEGLKDLSITRDL-DWGIPVP  238 (388)
T ss_pred             HHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCC
T ss_conf             677417644467997544324412330688999999999549988-98899999999986688876441247-7875048


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----HHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             42221464602444322001234676543100024110-----0004564321000102477654331012323334303
Q gi|255764461|r  222 DDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFI  296 (511)
Q Consensus       222 ~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d-----~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l  296 (511)
                      +++++++||||||+++|+++++++......+..+|+.+     +||+|+||++||+++|||++++.++++|+++++||||
T Consensus       239 ~~~~~~~~vW~da~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~G~Di~~fh~~~~~a~~~~~~~~~~~~~~~~g~v  318 (388)
T pfam09334       239 GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWPAMLMAAGLPLPTQVFAHGWL  318 (388)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf             88980687723565552000277777817888644367762000106764142017899999983899988667875799


Q ss_pred             EECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf             3058601000002211100000022111211100002478730111222111001332110221021345
Q gi|255764461|r  297 LHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSV  366 (511)
Q Consensus       297 ~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~  366 (511)
                      +++|+||||||||+|+|.|++++||+|++||||++.+++++|++||+++|++++|++|+|||||++||++
T Consensus       319 ~~~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d~~Fs~~~~~~~~n~~~~~kl~N~~~r~~  388 (388)
T pfam09334       319 TVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL  388 (388)
T ss_pred             EECCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7599444786998788899998878289999999539998999899999999987998887765773309


No 10 
>KOG1247 consensus
Probab=100.00  E-value=0  Score=764.16  Aligned_cols=501  Identities=23%  Similarity=0.414  Sum_probs=456.8

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             88817997888999988322247-89789999999988589803623643702279999999839998999999999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHA-YEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~-~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      ++++++||+++||+|..+|+|++ ++.+.|||+|||.+.+|++.+|+||+|++|++++.+|.++|++|+|+|++|+..++
T Consensus        12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk   91 (567)
T KOG1247          12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHK   91 (567)
T ss_pred             CCCCEEEECCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCHHHH
T ss_conf             75663351253202166533664667764423012366778744785156654046679998756987898872212678


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC--------CCCCCCC
Q ss_conf             99998088988674778888999999998887543102211000101133430155667211122--------2222223
Q gi|255764461|r   82 DMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD--------GQYYNAQ  153 (511)
Q Consensus        82 ~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~--------~~~~~~~  153 (511)
                      +.++.++|++|.|.||+++.+.+++|.||.+|+++|+..+.+..|.||+.|++|++|++|.+.+.        |+.|+.|
T Consensus        92 ~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqcd~c  171 (567)
T KOG1247          92 VVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQCDKC  171 (567)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             88875156621037606711327789886252115771100011577521124034044303378887765320566666


Q ss_pred             CC---CEE--------------CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             32---000--------------03454434466644444344433332-1000676545775410345675323433377
Q gi|255764461|r  154 HN---PVQ--------------WMEEEGYFFRLSAYQDKLLSYYESHP-EFILPIERRNEVISFVKSGLKDLSLSRKTFD  215 (511)
Q Consensus       154 ~~---p~~--------------~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~  215 (511)
                      |+   +++              .+.++|.|+.|+++++++.+|++... ...+..+.++...+||+.||+.+||+|+ +.
T Consensus       172 G~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRD-Lk  250 (567)
T KOG1247         172 GKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRD-LK  250 (567)
T ss_pred             HHHCCHHHHCCCCHHEECCCCEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-CC
T ss_conf             54237877238520100267735541279987577678999999730545777611678999999746665200022-55


Q ss_pred             CCCCCCCC--CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----HHCCCCCCCCHHCCHHHHHHHHHHHHC--
Q ss_conf             76578642--221464602444322001234676543100024110-----000456432100010247765433101--
Q gi|255764461|r  216 WGIKIPDD--PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWPAFLLSANLPL--  286 (511)
Q Consensus       216 WGipiP~~--~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d-----~~~~G~Dii~Fh~i~~pa~l~~~~~~~--  286 (511)
                      ||+|||.+  ++|||||||||+|||+|.++.+.   .+|++||...     ++|+||||++|||++||+++++++.++  
T Consensus       251 WGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt---~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~  327 (567)
T KOG1247         251 WGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYT---DEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTV  327 (567)
T ss_pred             CCCCCCHHHHCCCEEEEEECCCCEEEEEEHHHH---HHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCHH
T ss_conf             688767455166279999737513788506666---78999846974403988746677761466412454167777332


Q ss_pred             CCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf             232333430330586010000022111000000-2211121110000247873011122211100133211022102134
Q gi|255764461|r  287 PKKVFSHGFILHKGEKISKSLGNVIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRS  365 (511)
Q Consensus       287 p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~  365 (511)
                      -+++.++++|..|..|||||||..|...++-+. .+++++||||++.+|+++|+.|||++|+.++|+||.+++|||++|+
T Consensus       328 v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~  407 (567)
T KOG1247         328 VHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRV  407 (567)
T ss_pred             HEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10001544200246740145652220554335799888889887522676667767589999873599998888899999


Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHH
Q ss_conf             55653123321034555895565667899999999998775035899999999999999788654187012169999999
Q gi|255764461|r  366 VSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRAS  445 (511)
Q Consensus       366 ~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~  445 (511)
                      ++|+.+.|+|.+|+- +++..|+.+++.+++...++.++||....++|++.+|++++.+|+|+++++.|++...+++++.
T Consensus       408 l~fv~~~~~g~Vp~~-~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~  486 (567)
T KOG1247         408 LKFVAAKYNGVVPEM-ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEESRQRAG  486 (567)
T ss_pred             HHHHHHHHCCCCCCE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC
T ss_conf             999987608716630-3068758899999999999999988778999999999999752088741420001032200055


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999999985432248999999984988000795551012689973368777643234
Q gi|255764461|r  446 TVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHKTFDPIFPRF  510 (511)
Q Consensus       446 ~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~~l~~~~~i~~~~epLF~Ri  510 (511)
                      +++.++++++..++.||+|+||.++.+|.++||++. ..-.+.+.-.+.+||.++. ++|||+||
T Consensus       487 ~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~-~~~~~~~~~~l~~gH~ig~-~~pLFq~l  549 (567)
T KOG1247         487 TVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPE-TLFPDRFICRLLAGHRIGT-PSPLFQKL  549 (567)
T ss_pred             EEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CCCCCCCCEEECCCCCCCC-CCHHHHHC
T ss_conf             264336689999999863656620699999849850-0179961125227671688-51878755


No 11 
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=716.18  Aligned_cols=479  Identities=24%  Similarity=0.381  Sum_probs=392.6

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----CCCCHHH------
Q ss_conf             888817997888999988322247897899999999885898036236437022799999998----3999899------
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----AGVTTKV------   71 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~g~~p~e------   71 (511)
                      +++++|.+..||||+||.||||||++++..|+++||+||+|++|+|++|||+||+|++.++++    .|++..+      
T Consensus        32 ~~~~~f~~~~pPP~~~G~lHiGHa~~~~i~D~i~Ry~rm~G~~V~~~pG~D~~Gl~~e~~vek~l~~~g~~~~~~~re~f  111 (877)
T PRK05729         32 KSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKTRHDLGREKF  111 (877)
T ss_pred             CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf             89997799728898879861216674889999999987279966888986888605689999999874998354489999


Q ss_pred             ------HHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC
Q ss_conf             ------9999999999999980889886--74778888999999998887543102211000101133430155667211
Q gi|255764461|r   72 ------FVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK  143 (511)
Q Consensus        72 ------~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~  143 (511)
                            +++++.+.+.++|++||+++|+  -..|+++.+.+.|+++|.+|+++|+||++..+++|||.|++.+++.+|..
T Consensus       112 ~~~~~~w~~~~~~~i~~q~~rlG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~kGliyr~~~~V~wcp~~~Tals~~EV~~  191 (877)
T PRK05729        112 LEKVWEWKEESGGTITNQLRRLGASVDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEY  191 (877)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHC
T ss_conf             99999999999999999999828603358984558988999999999999988997841312366887788435678732


Q ss_pred             CC------------------------------------------------------------------------------
Q ss_conf             12------------------------------------------------------------------------------
Q gi|255764461|r  144 GA------------------------------------------------------------------------------  145 (511)
Q Consensus       144 ~~------------------------------------------------------------------------------  145 (511)
                      ..                                                                              
T Consensus       192 ~~~~~~~~~ikf~l~~~~~~l~i~TTrPeTl~~~~avav~P~dery~~l~Gk~~~~P~~~~~ipii~d~~V~~~~GTG~V  271 (877)
T PRK05729        192 KEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKKVILPLVGREIPIIADEYVDPEFGTGAV  271 (877)
T ss_pred             CCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCE
T ss_conf             45667338984132478874765016852344645788468874889855988980588975328715752677784617


Q ss_pred             ---------------------------CC-----------------------------------------CCCCCCCCCE
Q ss_conf             ---------------------------22-----------------------------------------2222233200
Q gi|255764461|r  146 ---------------------------DG-----------------------------------------QYYNAQHNPV  157 (511)
Q Consensus       146 ---------------------------~~-----------------------------------------~~~~~~~~p~  157 (511)
                                                 +|                                         -+|+.|+.|+
T Consensus       272 ~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~G~~~~~ar~~Ii~~L~~~g~l~~~~~~~h~~p~~~R~~~pi  351 (877)
T PRK05729        272 KITPAHDFNDFEVGKRHNLPMINIMDEDGTINENAGEYQGLDRFEARKAIVADLEELGLLVKIEPHKHSVGHSDRSGVVI  351 (877)
T ss_pred             EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf             97168997899988764887434656676404574102997088988999999997799774321356787546778569


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------
Q ss_conf             003454434466644444344433332100067654577541034567532343337776578642--------------
Q gi|255764461|r  158 QWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD--------------  223 (511)
Q Consensus       158 ~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------  223 (511)
                      +.+.++|||+++.++++++++.++++...+.|+..++.+.+||++ ++|||||||| +||+|||-.              
T Consensus       352 ~~~~~~QWFi~~~~l~~~~l~~~~~~~i~~~P~~~~~~~~~wl~n-~~DWcISRqr-~WG~piPvw~~~~~~~~v~~~~~  429 (877)
T PRK05729        352 EPYLSDQWFVKMKPLAKPALEAVEDGKIKFVPKRWENTYFHWMEN-IQDWCISRQL-WWGHRIPAWYDEDGEVYVGRTEP  429 (877)
T ss_pred             EEECCCCCEECCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHC-CCCCCCCCCC-CCCCCEEEEECCCCCEEECCCHH
T ss_conf             974130100003357999999860588312577888499998605-6555113554-46884258991898489416756


Q ss_pred             -------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HHH-H---HHHH
Q ss_conf             -------------221464602444322001234676543100024110000456432100010247-765-4---3310
Q gi|255764461|r  224 -------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FLL-S---ANLP  285 (511)
Q Consensus       224 -------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l~-~---~~~~  285 (511)
                                   +..|++||||+.+.++|+.+|+. ....+.+|+|.|+.+.|+||++|    |.| |++ +   .|..
T Consensus       430 ~~~~~~~~~~~~~d~DVlDtWFsSgl~p~s~lg~p~-~~~~~~~~~P~d~~~~G~Dii~f----Wv~rm~~~~~~~~~~~  504 (877)
T PRK05729        430 EARAKAGSENLTQDEDVLDTWFSSALWPFSTLGWPD-KTPDLKRFYPTSVLVTGFDIIFF----WVARMIMMGLHFTGQV  504 (877)
T ss_pred             HHHHHCCCCCCEECCCCCCCHHHCCCCCCCCCCCCC-CHHHHCCCCCCCCCCCCCCHHEE----EEEEEECCEEEECCCC
T ss_conf             644323876525565322334431666644166865-20544247887545206552113----4444431032011237


Q ss_pred             CCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHH
Q ss_conf             1232333430330-586010000022111000000221112111000024787301112221110013321102210213
Q gi|255764461|r  286 LPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSR  364 (511)
Q Consensus       286 ~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R  364 (511)
                      ++++|++|||+.. +|+|||||+||+|+|.+++++||||++|||+++.++.++|++|+++.+....  .+++++|| +.|
T Consensus       505 Pfk~v~~hG~v~D~~G~KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~di~~~~~~v~~~r--~f~nKlwN-~~r  581 (877)
T PRK05729        505 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYR--NFANKLWN-ASR  581 (877)
T ss_pred             CCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--HHHHHHHH-HHH
T ss_conf             611020044378898877878788989989999871919999999970776766000689999999--99999999-999


Q ss_pred             HHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCCCH
Q ss_conf             455653123-321034555895565667899999999998775035899999999999--99978865418701216999
Q gi|255764461|r  365 SVSMILKDY-DGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKTNP  441 (511)
Q Consensus       365 ~~~f~~k~~-~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~d~  441 (511)
                      .+.+-.... ....+....++..|+|+++++++++++++++|++|+|+.|++.+++|+  ++|+.|++..++ .+..++.
T Consensus       582 f~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F~w~d~cdwYlE~~K~-rl~~~~~  660 (877)
T PRK05729        582 FVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEFIWNEFCDWYLELAKP-VLNGGDE  660 (877)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCH
T ss_conf             999724656644456621067879999999999999998750002099999999998467557899999799-7708877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf             99999999999999999998543224899999998498800079555101
Q gi|255764461|r  442 DRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQ  491 (511)
Q Consensus       442 ~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~  491 (511)
                      .....+..++..++..+.+||||||||+||+||+.|+-..++....++++
T Consensus       661 ~~~~~~~~~L~~vL~~~L~lLhPfmPFitEElwq~L~~~~~si~~~~wP~  710 (877)
T PRK05729        661 AAKRGTRATLAYVLEEILRLLHPFMPFITEELWQKLAPEGESIMLAPWPE  710 (877)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             88999999999999999998560135759999985778897468637999


No 12 
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=702.76  Aligned_cols=472  Identities=25%  Similarity=0.406  Sum_probs=382.5

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCH------------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-9998------------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTT------------   69 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p------------   69 (511)
                      ++++|+|+.|+|||||+||||||++++.+|+++||+||+|++|+|+.|+|+||+||+.+++|+ |+++            
T Consensus        36 ~~~~f~i~~ppPy~nG~lHiGH~~~~t~~D~~~Ry~rm~G~~Vl~~~G~D~~GlPie~~vek~~~~~~~~~~~~~f~~~c  115 (809)
T PRK13208         36 KKPVYIIDTPPPTVSGKLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRAHDISREEFIELC  115 (809)
T ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHH
T ss_conf             99969990699998897213166889999999999981799669988458566899999999719990127999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC--
Q ss_conf             99999999999999998088988--67477888899999999888754310221100010113343015566721112--
Q gi|255764461|r   70 KVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA--  145 (511)
Q Consensus        70 ~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~--  145 (511)
                      +++++++.+.++++++++|+++|  ...+|++|.|.++++++|.+|+++|+||++..+++|||.|++.+++.+|..+.  
T Consensus       116 ~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~y~~~v~~~f~~L~~~Gliy~g~~~v~wcp~~~T~ls~~Ev~~~~~~  195 (809)
T PRK13208        116 RELTDEDEEKFRELWRRLGLSVDWSLEYRTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCRTAIAQAEVEYKERE  195 (809)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             99999999999999998286140689707588789999999999999779978742103677665755565676425677


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       196 ~~~~~ikf~~~~~~~~l~iaTTrPeTl~~~~av~v~P~d~ry~~l~G~~~~~P~~~~~vpi~~~~~V~~~~GTG~V~~~p  275 (809)
T PRK13208        196 GKLNYIKFPVKEGGEKITIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT  275 (809)
T ss_pred             CEEEEEEEEECCCCCEEEEEECCHHHHHHHHCEEECCCCHHHHHHCCCEEECCCCCCEEEEEEEEEEECCCCCCCEEECC
T ss_conf             60399988851798648999578237653020410688578898459889716889666786346650467878356678


Q ss_pred             -----------------------CC-----------------------------------------CCCCCCCCCEECCC
Q ss_conf             -----------------------22-----------------------------------------22222332000034
Q gi|255764461|r  146 -----------------------DG-----------------------------------------QYYNAQHNPVQWME  161 (511)
Q Consensus       146 -----------------------~~-----------------------------------------~~~~~~~~p~~~~~  161 (511)
                                             +|                                         -+|..|++|++.+.
T Consensus       276 ~~d~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~ea~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~pi~~~~  355 (809)
T PRK13208        276 FGDQTDVTWWRELNLPLRIIIDEDGRITEAAGKYAGLTIKEARKKIIEDLKEEGLLVKQEPITHNVKVCERCKTPIEILV  355 (809)
T ss_pred             CCCCHHHEEHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEE
T ss_conf             98730330244305563000377872424663459968999899999999968994134455455641147897216875


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCC-----------------
Q ss_conf             54434466644444344433332100067654577541034567-532343337776578642-----------------
Q gi|255764461|r  162 EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLK-DLSLSRKTFDWGIKIPDD-----------------  223 (511)
Q Consensus       162 ~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~-Dw~ISR~~~~WGipiP~~-----------------  223 (511)
                      ++|||++++++++++++.+++ .. +.|...++.+.+||++ ++ |||||||| +||+|||-.                 
T Consensus       356 ~~QWfi~~~~~k~~~~~~~~~-i~-~~P~~~~~r~~~wl~~-~~~DW~iSRqr-~WGtpiPiw~~~~~~~~~~~~~~~~~  431 (809)
T PRK13208        356 TRQWFIKVLDLKEELLERAKE-IE-WYPEHMRKRLENWIEG-LNWDWCISRQR-YFGTPIPVWYCKDCGGEGKPILADEE  431 (809)
T ss_pred             CHHHHHHHHHHHHHHHHHHHC-CE-ECCCHHHHHHHHHHHC-CCCCCCEEECC-CCCCCCCEEEECCCCCCCCCCCCCHH
T ss_conf             245665327778888876422-60-0584088899999842-56542000012-35864424760577875640148788


Q ss_pred             ---------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHH---CC
Q ss_conf             ---------------------------221464602444322001234676543100024110000456432100---01
Q gi|255764461|r  224 ---------------------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFH---AI  273 (511)
Q Consensus       224 ---------------------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh---~i  273 (511)
                                                 +..|++||||+.+.++++.+|.. +...+..++|.|+++.|+||++||   ++
T Consensus       432 ~l~~d~~~~~~~~~~~~~~~~~~~~~~e~dvlD~WfdS~~~p~~~~~~~~-~~~~f~~~~P~d~~~~G~Di~r~W~~~~l  510 (809)
T PRK13208        432 DLPVDPTKDPPPGYSECCRCGPGEFEPETDVMDTWADSSITPLIVTGWLE-DKELFEKLFPADLRPQGHDIIRTWLFYTI  510 (809)
T ss_pred             HCCCCCHHCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCHHHHCCCCC-CHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             73778110174111024666876633047666646556778887605632-15667544885244340598873999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHH
Q ss_conf             024776543310123233343033-0586010000022111000000221112111000024787301112221110013
Q gi|255764461|r  274 YWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNA  352 (511)
Q Consensus       274 ~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~  352 (511)
                      +. ++.+ .|..++++|++|||++ .+|+|||||+||+|+|.+++++||||++|||+++ +++++|.+|+++.+..  ..
T Consensus       511 ~~-~~~l-~~~~Pfk~v~~~G~vld~~G~KMSKS~GNvi~p~eii~~yGADalR~~la~-~~~~~d~~~~~~~~~~--~~  585 (809)
T PRK13208        511 LR-AYLL-TGKLPWKNIMISGMVLDPDGKKMSKSKGNVVDPEELLEKYGADAVRYWAAN-SRLGSDTRFSEKQIKI--GK  585 (809)
T ss_pred             HH-HHHH-CCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHC-CCCCCCCCCCHHHHHH--HH
T ss_conf             99-9985-388860201114605546774347778896897898653380999999961-8944465668999999--99


Q ss_pred             HHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHH
Q ss_conf             32110221021345565312332--1034555895565667899999999998775035899999999999--9997886
Q gi|255764461|r  353 DLANGIGNLVSRSVSMILKDYDG--MIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYF  428 (511)
Q Consensus       353 ~L~~~lgN~~~R~~~f~~k~~~g--~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi  428 (511)
                      .++++++|.. |   |+..+.+.  ..+....++..|+|+++++++++++++++|++|+|++|++.|++|+  +.+|.||
T Consensus       586 ~~~~klwN~~-r---f~~~~~~~~~~~~~~~~~~~lDrwils~l~~~i~~v~~~~e~y~f~~a~~~i~~F~~~~l~~~Yi  661 (809)
T PRK13208        586 RLLTKLWNAS-R---FVSSFIEPEKIEEKAPILEPVDRWILAKLNRVVKKATEALENYDFAEALEEIESFFWHDFCDNYL  661 (809)
T ss_pred             HHHHHHHHHH-H---HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999-9---99970354566676322578899999999999999999997358999999999999998789999


Q ss_pred             HHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             5418701216999999999999999999999985432248999999984988000795551
Q gi|255764461|r  429 DAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSL  489 (511)
Q Consensus       429 ~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~  489 (511)
                      +..++.-..+++......+..++.++++.+++||+|||||+||+||+.|+-+ ++....++
T Consensus       662 e~~k~R~~~~~~~~~~~~a~~tL~~vL~~~l~llaP~~PfiaEeiw~~L~~~-~sV~~~~w  721 (809)
T PRK13208        662 ELVKSRAYGEDGSEEQKSAIYTLYTVLRTLLKLLAPFMPFITEEIYSWLYGG-SSVHRASW  721 (809)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEECCC
T ss_conf             9988987148881889999999999999999999878899999999868999-81885799


No 13 
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=701.45  Aligned_cols=468  Identities=25%  Similarity=0.393  Sum_probs=394.8

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----CCCCH-----------
Q ss_conf             817997888999988322247897899999999885898036236437022799999998----39998-----------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----AGVTT-----------   69 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~g~~p-----------   69 (511)
                      ++|.|.+|||+++|.||||||.++.+.|+++||+||+||+|+|+.|+|.+|++++.+.++    +|++.           
T Consensus        33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~  112 (877)
T COG0525          33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKK  112 (877)
T ss_pred             CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             97279689799888651165453789999999987079733357987778830899999999870988010589999999


Q ss_pred             -HHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC
Q ss_conf             -999999999999999980889886747---7888899999999888754310221100010113343015566721112
Q gi|255764461|r   70 -KVFVDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA  145 (511)
Q Consensus        70 -~e~~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~  145 (511)
                       .|+.+++...|.++|+++|+|+| |.|   |.||+..++||+.|.+|+++|+||++++.++|||+|++.++|.+|....
T Consensus       113 ~weWk~e~~~~I~~Q~~rLG~S~D-WsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e  191 (877)
T COG0525         113 CWEWKEESGGTIREQLRRLGVSVD-WSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKE  191 (877)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf             999999998999999998478735-5531126798899999999999997894651487434788633402044500011


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       192 ~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkI  271 (877)
T COG0525         192 VEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKI  271 (877)
T ss_pred             CCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf             00368999975389986389981686301026699989987666863588896468897533534733477678741897


Q ss_pred             -------------------------------------------------------------------CCCCCCCCCCCEE
Q ss_conf             -------------------------------------------------------------------2222222332000
Q gi|255764461|r  146 -------------------------------------------------------------------DGQYYNAQHNPVQ  158 (511)
Q Consensus       146 -------------------------------------------------------------------~~~~~~~~~~p~~  158 (511)
                                                                                         ...+|+.||.|+|
T Consensus       272 tpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IE  351 (877)
T COG0525         272 TPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIE  351 (877)
T ss_pred             CCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEE
T ss_conf             16999406545301798720688899705467764458986999999999999968996766444541761167796020


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------------
Q ss_conf             03454434466644444344433332100067654577541034567532343337776578642---------------
Q gi|255764461|r  159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD---------------  223 (511)
Q Consensus       159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~---------------  223 (511)
                      .+-++|||+++..+++.+++..+++...+.|+.+++.+.+|+++ ++|||||||+ +||+|||..               
T Consensus       352 p~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~-i~DWcISRQl-wwGh~IPvWy~~~~g~v~v~~~~~  429 (877)
T COG0525         352 PLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMEN-IRDWCISRQL-WWGHRIPVWYCKECGNVVVAEEEP  429 (877)
T ss_pred             EEECCEEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE-ECCCCCCEEEECCCCCEEECCCCC
T ss_conf             12324214870752699999874598468168899889999863-8376422211-317635159966998389678654


Q ss_pred             ----------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH-HH-HH---H
Q ss_conf             ----------------221464602444322001234676543100024110000456432100010247-76-54---3
Q gi|255764461|r  224 ----------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA-FL-LS---A  282 (511)
Q Consensus       224 ----------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa-~l-~~---~  282 (511)
                                      +..|+++||++.+..+|+++|+.+ ..++.+|+|+++.+.|+|||+|    |.| |+ ++   +
T Consensus       430 ~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fyPt~llvtG~DIIff----Wvarmi~~~~~~~  504 (877)
T COG0525         430 EDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFYPTDLLVTGHDIIFF----WVARMIMRGLHLT  504 (877)
T ss_pred             CCHHHHCCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CHHHHHCCCCCEECCCCHHHHH----HHHHHHHHHHHHC
T ss_conf             3535424682202057852323324115646400689874-4477735887300355313389----9999999999865


Q ss_pred             HHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHC
Q ss_conf             3101232333430330-586010000022111000000221112111000024787301112221110013321102210
Q gi|255764461|r  283 NLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNL  361 (511)
Q Consensus       283 ~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~  361 (511)
                      |..+++.|++||++.. +|+|||||+||+|+|.+++++||+|++||+|++.+..|+|++|+++.+....|  ++||+|| 
T Consensus       505 ~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn--F~nKlWN-  581 (877)
T COG0525         505 GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN--FLNKLWN-  581 (877)
T ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHH-
T ss_conf             8999627898116786888887555788589799998848589999999536888665768899888999--9999874-


Q ss_pred             CHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHH
Q ss_conf             213455653123321034---555895565667899999999998775035899999999999--999788654187012
Q gi|255764461|r  362 VSRSVSMILKDYDGMIPT---PGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWEL  436 (511)
Q Consensus       362 ~~R~~~f~~k~~~g~ip~---~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l  436 (511)
                      ++|.+.+   ++++..+.   ....+..|+|++++++++++.++++|++|+|..|.+.+++|+  ++|++|++..|| .+
T Consensus       582 a~Rfv~~---~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~-~l  657 (877)
T COG0525         582 ATRFVLM---NLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP-RL  657 (877)
T ss_pred             HHHHHHH---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf             9999985---2544576543322235488999999999999999999862378899999999699898999998214-40


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             16999999999999999999999985432248999999984988000795551
Q gi|255764461|r  437 KKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSL  489 (511)
Q Consensus       437 ~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~  489 (511)
                      ..+ .+....+.+++..++..+.+||||||||+||+||+.|... +++....+
T Consensus       658 ~~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-~si~~~~~  708 (877)
T COG0525         658 YGG-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-ESIHLASW  708 (877)
T ss_pred             CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC-CEEEECCC
T ss_conf             285-7778999999999999999984887750157899865898-83784168


No 14 
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=693.75  Aligned_cols=480  Identities=24%  Similarity=0.386  Sum_probs=383.7

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CC--------------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-99--------------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GV--------------   67 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~--------------   67 (511)
                      ++++|++-.|||||||.|||||+++++..|+++||+||+|++|+|+.|||+||+||+.+++++ |+              
T Consensus        33 ~~~~f~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~V~~~~GwD~hGLPiE~~vek~lgi~~k~~i~~~gi~~F  112 (1042)
T PRK06039         33 GGPEFVFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEKYGIEKF  112 (1042)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHH
T ss_conf             99978996789987887214366878999999999873899668989748677899999999847667642655289999


Q ss_pred             --CHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC
Q ss_conf             --98999999999999999980889886--74778888999999998887543102211000101133430155667211
Q gi|255764461|r   68 --TTKVFVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK  143 (511)
Q Consensus        68 --~p~e~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~  143 (511)
                        .|++++.+|.+.++++++++|+++|+  -+.|.+|.+.+.++++|.+|+++|+||++..+++|||.|++.|++.+|..
T Consensus       113 ~~~cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~~L~ekGliYrg~~~V~wcp~~~T~Lad~Ev~~  192 (1042)
T PRK06039        113 NEECRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALKQLYDKGLLYEGYRVVPYCPRCETPLSNHEVRQ  192 (1042)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCCCCHHHHHHC
T ss_conf             99999999999999999999818205268982768988999999999999987998962713254898898811867305


Q ss_pred             C-----------------C-------------------------------------------------------------
Q ss_conf             1-----------------2-------------------------------------------------------------
Q gi|255764461|r  144 G-----------------A-------------------------------------------------------------  145 (511)
Q Consensus       144 ~-----------------~-------------------------------------------------------------  145 (511)
                      +                 .                                                             
T Consensus       193 ~Y~~~~~~s~~vkF~l~~~~~~~l~iwTTrPwTl~~n~avaV~Pd~~Y~~v~~~~~~e~~i~a~~~~~~~~~~~~~~~~~  272 (1042)
T PRK06039        193 GYKEVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVGPDIDYVKVRDKGGGEVYILAEALLEKVLKKEGGEEYE  272 (1042)
T ss_pred             CCEEEECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCEE
T ss_conf             74441446499999975279847998658875111135999868763699984489759998088899998551675407


Q ss_pred             ---------------------------------------------------------------------------CC---
Q ss_conf             ---------------------------------------------------------------------------22---
Q gi|255764461|r  146 ---------------------------------------------------------------------------DG---  147 (511)
Q Consensus       146 ---------------------------------------------------------------------------~~---  147 (511)
                                                                                                 +|   
T Consensus       273 v~~~~~G~~L~G~~y~~p~~~~~~~~~~~~~~Vi~~d~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~vd~~G~~~  352 (1042)
T PRK06039        273 VLETFKGEELEGLRYEPPFPYFVPEDEENAFRVVAADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDNGRFT  352 (1042)
T ss_pred             EEEEEECHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             88775124307888778864323667787427995472057889742896788988999999983998666317755334


Q ss_pred             --------------------------------------CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             --------------------------------------222223320000345443446664444434443333210006
Q gi|255764461|r  148 --------------------------------------QYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP  189 (511)
Q Consensus       148 --------------------------------------~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p  189 (511)
                                                            -+|..|++|++++.++|||++++++++++.+..+. ..| .|
T Consensus       353 ~~~~~~~G~~v~da~~~Ii~~L~~~g~l~~~~~~~Hsyp~cwR~~~pli~~~~~QWFi~~~~~k~~~l~~~~~-i~w-~P  430 (1042)
T PRK06039        353 EEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYRAVESWFIRVTKIKDRMLELNQK-INW-YP  430 (1042)
T ss_pred             CCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHC-CEE-EC
T ss_conf             6443517936530209999999866752246633557874257798148633262776557679999998602-147-34


Q ss_pred             HHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------------
Q ss_conf             76545-77541034567532343337776578642---------------------------------------------
Q gi|255764461|r  190 IERRN-EVISFVKSGLKDLSLSRKTFDWGIKIPDD---------------------------------------------  223 (511)
Q Consensus       190 ~~~~~-~~~~wl~~gl~Dw~ISR~~~~WGipiP~~---------------------------------------------  223 (511)
                      ++++. ++.+||++ ++|||||||| +||+|||..                                             
T Consensus       431 ~~~~~~rf~~wl~n-~~DW~ISRQR-~WG~PIPvw~~~~~~~~~v~~s~~el~~~~~~~~~~dlhrp~iD~v~~~~~~~~  508 (1042)
T PRK06039        431 EHIKDGRFGKWLEN-ARDWAISRNR-YWGTPLPIWRCEDCGRIDVIGSIEELEEDFGVPKPIDLHRPYIDEVTLPCPDCG  508 (1042)
T ss_pred             CCCCCCHHHHHHHH-CCCHHHHCCC-CCCCCCEEEEECCCCCEEECCCHHHHHHHCCCCCCCHHCCCCCCCEEECCCCCC
T ss_conf             52320069999863-6331100023-457754069967999667028699998760888830102454550565589986


Q ss_pred             -----CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             -----2214646024443220012346765431000241100004564321--000102477654331012323334303
Q gi|255764461|r  224 -----PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKVFSHGFI  296 (511)
Q Consensus       224 -----~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i~~~g~l  296 (511)
                           +..|++||||+.+.+.++.+|+.+....++++||+|+...|.|+++  |++++-.++++ .|..++++|++|||+
T Consensus       509 ~~~~r~~DvlD~WfdSg~~p~a~~~~p~~~~~~f~~~~PaD~i~eg~Dq~RgWF~sl~~~s~~~-~~~~Pfk~v~~~G~V  587 (1042)
T PRK06039        509 TGMRRVPDVLDVWFDSGSMPYAQLHYPFENKELFEEHFPADFIVEGIDQTRGWFYTLLALSTAL-FDRPPYKNVIVHGHV  587 (1042)
T ss_pred             CCCCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCHHEEEEEEEEEEEEEE-CCCCCCCEEEEEEEE
T ss_conf             2103056421237635874406977864366666215864444523222101436000321223-484200258995038


Q ss_pred             EE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf             30-58601000002211100000022111211100002478730111222111001332110221021345565312332
Q gi|255764461|r  297 LH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDG  375 (511)
Q Consensus       297 ~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g  375 (511)
                      +. +|+|||||+||+|+|.+++++||||++|+|+++..++++|+.||++++.+.++. +.++++| +.|...+ ..+.++
T Consensus       588 ld~~G~KMSKS~GNvidP~~vi~~yGADalRl~l~~~~~~~~d~~f~~~~v~e~~r~-~~~~lwN-~~rF~~~-y~~ld~  664 (1042)
T PRK06039        588 LDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSVPWEDLRFSEDGIREVVRK-FLLPLWN-VYSFFAL-YANLDG  664 (1042)
T ss_pred             ECCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHH-HHHHHHH-HHHHHHH-HHHCCC
T ss_conf             736864803367886897999886082799999996677555615779999999999-9999999-9999987-421027


Q ss_pred             CCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHCC--CHHHCCCHHHHHHH
Q ss_conf             103-----45558955656678999999999987750358999999999999-99788654187--01216999999999
Q gi|255764461|r  376 MIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVS-EVDRYFDAQKP--WELKKTNPDRASTV  447 (511)
Q Consensus       376 ~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~-~~N~yi~~~~P--W~l~k~d~~~~~~v  447 (511)
                      .-|     ....+...|+|+++++++++++++++|++|+|++|++.|++|++ .+|+|++..++  |.-. .+.++ ..+
T Consensus       665 f~~~~~~~~~~~~~~~DrWils~l~~~i~~v~~~~~~y~~~~a~~~l~~Fi~dLs~wYi~~~r~R~~~~~-~~~~k-~~A  742 (1042)
T PRK06039        665 FDPNEAEEALDSRNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEE-DDPDK-LAA  742 (1042)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHH-HHH
T ss_conf             9954355563216687899999999999999999972459999999999998877999999778760368-97899-999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCCC
Q ss_conf             999999999999985432248999999984988--000795551012
Q gi|255764461|r  448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQR  492 (511)
Q Consensus       448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~~  492 (511)
                      ..++.++|..+++||+|||||+||+||+.|..+  +++.++.++++.
T Consensus       743 ~~tL~~vL~~l~~llAP~~PFitEeiyq~L~~~~~~eSVHl~~~P~~  789 (1042)
T PRK06039        743 YNTLYTVLETLSRLMAPFTPFIAEEIYQNLKGETGPESVHLADWPEV  789 (1042)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf             99999999999999650136769999984455899951798146776


No 15 
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=669.43  Aligned_cols=470  Identities=23%  Similarity=0.335  Sum_probs=367.1

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-C-----CCHH------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-9-----9989------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-G-----VTTK------   70 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g-----~~p~------   70 (511)
                      ++++|++.-|||||||.||||||++++..|+++||+||+||+|+|++|||+||+|||.+|+++ |     +++.      
T Consensus        47 ~~~~f~l~dgPPyanG~lH~GHaln~tlkDii~Rykrm~G~~v~~~pGwD~hGLPiE~~v~k~~g~~~~~~~~~~f~~~c  126 (910)
T PRK05743         47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKRKKLSAAEFRKKC  126 (910)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             98977982799998986424477878999999999875899679999658686999999999619981319999999999


Q ss_pred             -HHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC--
Q ss_conf             -99999999999999980889886--7477888899999999888754310221100010113343015566721112--
Q gi|255764461|r   71 -VFVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA--  145 (511)
Q Consensus        71 -e~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~--  145 (511)
                       +++.++.+.++++++++|+++|+  -+.|.+|++.+.++++|.+|+++|+||++..+++|||.|++.|++.+|++..  
T Consensus       127 r~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~d~~y~~~~~~~F~~l~ekGliYr~~kpV~Wcp~~~TaLA~~EVey~d~~  206 (910)
T PRK05743        127 REYALEQVDIQREDFKRLGVLGDWDNPYLTMDFEYEANIIRVLGKMAKKGYLYKGLKPVYWSPDCGSALAEAEVEYHDKT  206 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCCCCHHEECCCEE
T ss_conf             99999999999999997190264589726689889999999999999869968578232048999944001010057754


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       207 s~si~v~f~l~~~~~~~~~~~~~~~~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~  286 (910)
T PRK05743        207 SPSIYVAFPVVDGKAGLDGLKDASLVIWTTTPWTLPANQAIAVHPELDYALVEVGEKLILAKDLVESVLKRLGWEDYEVL  286 (910)
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHCCCEEEECCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCEEEE
T ss_conf             32599998943763333456774399970884034206468877875056403674554199899999998477430665


Q ss_pred             ------------------------------------------------------------------CC------------
Q ss_conf             ------------------------------------------------------------------22------------
Q gi|255764461|r  146 ------------------------------------------------------------------DG------------  147 (511)
Q Consensus       146 ------------------------------------------------------------------~~------------  147 (511)
                                                                                        +|            
T Consensus       287 ~~~~G~~L~g~~~~~P~~~~~~pii~~d~V~~~~GTG~Vh~aPaHg~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~  366 (910)
T PRK05743        287 ATFKGAELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGVYTEEAPLFAGL  366 (910)
T ss_pred             EEEECCEECCCEEECCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             32205350376897677896522784473267777611885787984367788764998654458776343677445883


Q ss_pred             -----------------------------CCCCCCCCCEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             -----------------------------222223320000345443446664--4444344433332100067654577
Q gi|255764461|r  148 -----------------------------QYYNAQHNPVQWMEEEGYFFRLSA--YQDKLLSYYESHPEFILPIERRNEV  196 (511)
Q Consensus       148 -----------------------------~~~~~~~~p~~~~~~~~~f~~l~~--~~~~l~~~~~~~~~~~~p~~~~~~~  196 (511)
                                                   -+|..|++|+.++.++|||++++.  +++++++.++. .. +.|+..++.+
T Consensus       367 ~v~~a~~~Ii~~L~~~g~L~~~~~~~Hsyp~cwR~~~Pvi~rat~QWFi~~d~~~~r~~~l~~i~~-v~-~~P~~~~~r~  444 (910)
T PRK05743        367 FVFKANPKIIELLEEKGALLKLEKITHSYPHCWRTKKPIIFRATPQWFISMDKKTLREQALKAIEK-VK-WIPSWGKNRI  444 (910)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHH-CC-EECHHHHHHH
T ss_conf             499889999999987798543421013675332668862676310034234718899999999984-67-4151678799


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------------------CCC
Q ss_conf             541034567532343337776578642--------------------------------------------------221
Q gi|255764461|r  197 ISFVKSGLKDLSLSRKTFDWGIKIPDD--------------------------------------------------PQY  226 (511)
Q Consensus       197 ~~wl~~gl~Dw~ISR~~~~WGipiP~~--------------------------------------------------~~~  226 (511)
                      .+|+++ ++|||||||| +||+|||-.                                                  +..
T Consensus       445 ~~~i~~-r~DWcISRQR-~WG~PIPv~~~~~~~~~~~~~~~~~~i~~~~~~~G~d~w~~~~~~~~l~~~~~~~~~~r~~D  522 (910)
T PRK05743        445 ESMVEN-RPDWCISRQR-TWGVPIPIFYHKETGELHRTPELIEHVAKLFEKEGIDAWFELDAKELLPEGYPADQYEKETD  522 (910)
T ss_pred             HHHHHC-CCCCEEECCC-CCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHEEECCC
T ss_conf             999707-9886252135-66882259997899700476888999999887507641123999883789898310064475


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCCCCCCCEEE-CCCCC
Q ss_conf             4646024443220012346765431000241100004564321--00010247765433101232333430330-58601
Q gi|255764461|r  227 IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKVFSHGFILH-KGEKI  303 (511)
Q Consensus       227 ~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~-~G~KM  303 (511)
                      |++||||+..      .|..-........||+|+++.|.|+.+  ||+.+..++.+ .|..++++|++|||++. +|+||
T Consensus       523 vlD~WFdSGs------s~~~~~~~~~~~~~PaDly~eG~Dq~RgWF~s~ll~s~~~-~~~~Pfk~v~~hG~vlD~~G~KM  595 (910)
T PRK05743        523 ILDVWFDSGS------THAAVLEDRERLGYPADLYLEGSDQHRGWFQSSLLTSVAT-NGKAPYKQVLTHGFTVDGKGRKM  595 (910)
T ss_pred             CCCCEECCCC------CCHHHCCCCCCCCCCCCEEECCCCHHHEEHHHHHHHEEEE-CCCCCEEEEEECCEEECCCCCCC
T ss_conf             5321002798------6311114662116843232337652210236622122452-17888417986132898988888


Q ss_pred             CHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC-----
Q ss_conf             000002211100000022111211100002478730111222111001332110221021345565312332103-----
Q gi|255764461|r  304 SKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIP-----  378 (511)
Q Consensus       304 SKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip-----  378 (511)
                      |||+||+|+|.+++++||||++|+|+++ .+++.|+.||.+-+.+.  ++...+++|    +.+|+..+.++.-|     
T Consensus       596 SKS~GNvidP~~ii~~yGAD~lRlwvas-~d~~~d~~~s~~il~~~--~~~yrKi~N----t~rf~l~nl~~f~~~~~~~  668 (910)
T PRK05743        596 SKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQV--AESYRRIRN----TLRFLLGNLNDFDPAKDAV  668 (910)
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCHHHHHHH--HHHHHHHHH----HHHHHHHHHCCCCCCCCCC
T ss_conf             8878777998999865494099999872-57434545568999889--999999999----9999986321688322458


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHC--CCHHHHHHHHHHHHHH
Q ss_conf             4555895565667899999999998775035899999999999--99978865418701216--9999999999999999
Q gi|255764461|r  379 TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKK--TNPDRASTVLYVTVEV  454 (511)
Q Consensus       379 ~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~  454 (511)
                      ....+...|+|+++++++++++++++|++|+|+.|++.|++|+  +.+|.|++..++ .++.  .+..+...+..++.++
T Consensus       669 ~~~~l~~lD~wiL~~l~~~~~~v~~~~~~y~f~~a~~~l~~F~~~dls~~Y~~~~Kd-rly~~~~~~~~R~s~q~~L~~v  747 (910)
T PRK05743        669 PYEELVELDRWALHRLNELQEEIIEAYENYDFHKVYQALHNFCSVDLSSFYLDIIKD-RLYTDKADSLARRSAQTALYHI  747 (910)
T ss_pred             CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH
T ss_conf             924465768999999999999999998635588999999988575687999876124-4414789849999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf             9999998543224899999998498800079555101
Q gi|255764461|r  455 IRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQ  491 (511)
Q Consensus       455 l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~~  491 (511)
                      +..++++|+|||||+||+||+.|+...++....++.+
T Consensus       748 l~~l~~llaPi~Pf~~EEiw~~l~~~~~SV~l~~wp~  784 (910)
T PRK05743        748 LEALVRWLAPILSFTAEEIWQYLPEREESVFLEEWPE  784 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
T ss_conf             9999999986646999999973889999768267999


No 16 
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00  E-value=0  Score=662.27  Aligned_cols=469  Identities=23%  Similarity=0.354  Sum_probs=362.0

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC----CCC----------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983----999----------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA----GVT----------   68 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~----g~~----------   68 (511)
                      ++++|++--+||||||.|||||+++|+..|+++||+||+|++|+|+.|||+||+|||.+++|+    |++          
T Consensus        52 ~~~~f~~~dGPPyanG~lH~GHaln~tikDii~Rykrm~G~~V~~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~f~  131 (966)
T PRK13804         52 GRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPLNEFR  131 (966)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHH
T ss_conf             99976995799999998612255666899999999874899668999768887899999999776528982338999999


Q ss_pred             --HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCC
Q ss_conf             --899999999999999998088988--6747788889999999988875431022110001011334301556672111
Q gi|255764461|r   69 --TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKG  144 (511)
Q Consensus        69 --p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~  144 (511)
                        +++++.++.+.++++++++|+++|  +-+.|++|++.+.++++|.+|+++|+||++..+++|||.|++.|++.+|.+.
T Consensus       132 ~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~dp~y~~~~~~~F~~l~ekGliYr~~~pV~Wcp~~~TaLA~~EVey~  211 (966)
T PRK13804        132 KECREYALSWIDVQREEFKRLGVIGDWENPYTTMDFHAEARIAREFMKFAAKGQLYRGSKPVMWSVVERTALAEAEVEYH  211 (966)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCC
T ss_conf             99999999999999999998292022589842289899999999999999879988438514768988866236754766


Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             2-------------------------------------------------------------------------------
Q gi|255764461|r  145 A-------------------------------------------------------------------------------  145 (511)
Q Consensus       145 ~-------------------------------------------------------------------------------  145 (511)
                      .                                                                               
T Consensus       212 d~~s~s~~v~f~v~~~~~~~~~~~~l~iwTTtPwTl~~n~avav~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~l~e~~  291 (966)
T PRK13804        212 DHESDTIWVKFPVKDGKGILLTGASVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDNWAKPGEKLVVADALAESV  291 (966)
T ss_pred             CEECCEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf             78666699998734662000478706775078502202102024577643789950454211244551566547789999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       292 ~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~~L~~~~  371 (966)
T PRK13804        292 AKKAGVESFERVRDVKADDLEAIVCAHPLKGLDGGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFEVWMKYGRELEV  371 (966)
T ss_pred             HHHHCCCCEEEEEEECCCEECCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf             98737642278730015000476652666555666671578981683156778563775577887889999983987310


Q ss_pred             ----------C-------------------C------------------------------CCCCCCCCCEECCCCCCCC
Q ss_conf             ----------2-------------------2------------------------------2222233200003454434
Q gi|255764461|r  146 ----------D-------------------G------------------------------QYYNAQHNPVQWMEEEGYF  166 (511)
Q Consensus       146 ----------~-------------------~------------------------------~~~~~~~~p~~~~~~~~~f  166 (511)
                                +                   |                              -+|..|+.|++++.++|||
T Consensus       372 ~~~i~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~~a~~~Ii~~L~e~g~L~~~~~~~HsyP~~wR~~~Pvi~r~t~QWF  451 (966)
T PRK13804        372 RTAIPFTVDEDGFYTEDAPGFGGARVIDDKGKKYGDANKAVIEALIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWF  451 (966)
T ss_pred             CCCCCCCCCCCCEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEE
T ss_conf             35778756887606545600125542134687365627999999996799645564124776345678627996046147


Q ss_pred             CCCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----------------
Q ss_conf             46664-------4444344433332100067654577541034567532343337776578642----------------
Q gi|255764461|r  167 FRLSA-------YQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD----------------  223 (511)
Q Consensus       167 ~~l~~-------~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~----------------  223 (511)
                      +++++       +++++++.++. .. +.|+..++.+.+|+++ ++|||||||| +||+|||..                
T Consensus       452 i~~~~~~~~~~~lr~~~l~~i~~-v~-~~P~~~~~r~~~~l~~-~~DW~ISRQR-yWG~PIPi~~~e~~~~~~~~~~~~~  527 (966)
T PRK13804        452 ISMDKDLGDGGTLRSRALDAIKK-TR-FVPAAGQNRLRGMIED-RPDWVISRQR-AWGVPIPVFVDENGEILMDDEVNER  527 (966)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH-CC-CCCHHHHHHHHHCCCC-CCCCEEECCC-CCCCCCCEEECCCCCCCCCHHHHHH
T ss_conf             87353432138999999987654-35-0653434455512157-8676663113-4588751798379974457567789


Q ss_pred             ----------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             ----------------------------------2214646024443220012346765431000241100004564321
Q gi|255764461|r  224 ----------------------------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR  269 (511)
Q Consensus       224 ----------------------------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~  269 (511)
                                                        +..|++||||+...      |...........||+|+++.|.|+.+
T Consensus       528 i~~~~~~~g~d~w~~~~~~~~~~~~~~~~~~~~r~~DvlD~WfdSgss------~~~~~~~~~~~~~PaD~y~eG~Dq~r  601 (966)
T PRK13804        528 IADAFEEEGADAWFAEGAKERFLGGFHPGEEWTKVTDILDVWFDSGST------HAFVLEDRPDLPWPADLYLEGSDQHR  601 (966)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHEECCCHHHHHHHCCCC------CCCCCCCHHHCCCCCCEEECCCCHHH
T ss_conf             999987618763334574765588878745507413114466515775------32011585445897416862541888


Q ss_pred             --HHCCHHHHHHHHHHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCC
Q ss_conf             --00010247765433101232333430330-586010000022111000000221112111000024787301112221
Q gi|255764461|r  270 --FHAIYWPAFLLSANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGL  346 (511)
Q Consensus       270 --Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~  346 (511)
                        ||+.+..+.. ..+..++++|++|||++. +|+|||||+||+|+|.+++++||||++|+|+++ .++++|+.|+++.+
T Consensus       602 gWF~s~l~~s~~-~~~~~Pfk~v~~hG~VlDe~G~KMSKS~GNvvdP~~ii~~yGADalRl~~as-~~~~~d~~~~~~~l  679 (966)
T PRK13804        602 GWFHSSLLESCG-TRGRAPYKAVLTHGFTLDEKGEKMSKSLGNVVDPQDVIKQSGADILRLWVAS-VDYQDDQRIGKEIL  679 (966)
T ss_pred             HHHHHHHHHHHC-CCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCHHHH
T ss_conf             699999987422-0688774510341168988988887878898998999987292188899984-77544634568999


Q ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-
Q ss_conf             11001332110221021345565312332103----4555895565667899999999998775035899999999999-
Q gi|255764461|r  347 KKRVNADLANGIGNLVSRSVSMILKDYDGMIP----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV-  421 (511)
Q Consensus       347 ~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~-  421 (511)
                      .+.  ++...+++|    +++|+..+.++.-|    ....+...|+|+++++++++++++++|++|+|++|++.|++|+ 
T Consensus       680 ~~~--~~~~~ki~N----t~rf~l~nl~~f~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~Y~f~~a~~~l~~F~~  753 (966)
T PRK13804        680 KTN--AETYRKLRN----TLRWMLGTLAHFDPGEAVAYADLPELERLMLHRLNELDATVRKAYEAFDFKTIYKALVNFMT  753 (966)
T ss_pred             HHH--HHHHHHHHH----HHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999--999999999----99999986427983234892235287899999999999999998511359999999999999


Q ss_pred             -HHHHHHHHHHCCCHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCCCCHHHHC
Q ss_conf             -99978865418701216--99999999999999999999998543224899999998498-80007955510
Q gi|255764461|r  422 -SEVDRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFV-ADENRCFQSLD  490 (511)
Q Consensus       422 -~~~N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~-~~~~~~~~~~~  490 (511)
                       +.+|.||+..++ .+..  .+......+..++.+++..++++|+|||||+||+||+.+.. .+++..+.++.
T Consensus       754 ~dLs~~Yle~~Kd-rly~~~~~~~~rrsaq~~L~~il~~l~~llAPi~Pf~aEEiw~~~~~~~~~Sv~l~~~p  825 (966)
T PRK13804        754 VDLSAFYFDIRKD-ALYCDAPSSLRRKAALTVIYEIFDRLTKWLAPILPFTTEEAWLYRYPEEEVSVHLEQFP  825 (966)
T ss_pred             HHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf             8787999988437-54057998399999999999999999999976728999999972557899876711489


No 17 
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products ,  as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=645.35  Aligned_cols=465  Identities=24%  Similarity=0.373  Sum_probs=378.6

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCC-------------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-999-------------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVT-------------   68 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~-------------   68 (511)
                      +++.|+.==+||||||.||||||.+-|+.|++.||+.|+||+|.|.+||||||+|||.++++. |++             
T Consensus        34 ~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pGWDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~  113 (938)
T TIGR00392        34 DKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPGWDTHGLPIELKVEKKLGISGKKEIESLEGIEE  113 (938)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             99835874485876799740255666761123210112250032047866578702445640478764000220443899


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHC
Q ss_conf             ----899999999999999998088988--67477888899999999888754310221100010113343015566721
Q gi|255764461|r   69 ----TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVY  142 (511)
Q Consensus        69 ----p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~  142 (511)
                          |+++|-++.+.+++++++||+=.|  .-+-|.++++.+.+.++|++|++||+||++-.+++|||.|++.|++.||.
T Consensus       114 fr~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~l~~~~eKGL~~~~~kpv~WSp~~~TaLAeaE~e  193 (938)
T TIGR00392       114 FREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLLKELHEKGLLYRGLKPVYWSPRCETALAEAEVE  193 (938)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCHHHHHHHC
T ss_conf             99999999999999999888853120225578506788999999999999975242022552211441446702476305


Q ss_pred             CC------C-----------------------------------------------------------------------
Q ss_conf             11------2-----------------------------------------------------------------------
Q gi|255764461|r  143 KG------A-----------------------------------------------------------------------  145 (511)
Q Consensus       143 ~~------~-----------------------------------------------------------------------  145 (511)
                      +.      -                                                                       
T Consensus       194 y~~~Y~d~v~dpS~yv~F~~~~~~~~~rh~~~~~~~~n~~~~~l~iWTTTPWTLPaN~Aiav~pd~eY~~~~~~~~y~g~  273 (938)
T TIGR00392       194 YKEEYKDNVKDPSIYVKFPVKKDSKTERHAKVKLSGVNGLDISLVIWTTTPWTLPANLAIAVHPDFEYALVQLETDYSGK  273 (938)
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHEEECCCEEEEEEEECCCCCCC
T ss_conf             88732157606228898753156125678874268757888689996688714466416011445068999866874663


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       274 ~~~~i~a~~L~e~l~~~~g~~h~~~~~e~~~~~kG~~Le~l~Y~hpl~~~~~~~~~m~~~~L~~~~~~~e~~~~v~~gdh  353 (938)
T TIGR00392       274 EEYLILAKKLVEKLLNKLGVEHDITDYEIIKTFKGSDLEGLEYEHPLYDKVSQLKGMVVEELIERVDEKEGAPVVIGGDH  353 (938)
T ss_pred             EEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCE
T ss_conf             12555125678988642155345311078655516441652465266532201156325232231068986448984004


Q ss_pred             ----------------------------------------------------------CCC-------------------
Q ss_conf             ----------------------------------------------------------222-------------------
Q gi|255764461|r  146 ----------------------------------------------------------DGQ-------------------  148 (511)
Q Consensus       146 ----------------------------------------------------------~~~-------------------  148 (511)
                                                                                ++.                   
T Consensus       354 VT~~~GTG~VHtAPghG~eDy~~g~kygl~~e~~~pvD~~G~y~~~~~~~~G~~v~~~d~~yi~~~~R~V~~Ayd~~An~  433 (938)
T TIGR00392       354 VTTEDGTGIVHTAPGHGEEDYEIGKKYGLPDEVLSPVDEKGVYTEEVADFKGRFVKDADKDYIIIKGRYVKDAYDDEANK  433 (938)
T ss_pred             EECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHH
T ss_conf             54688972268788987328999998289864314668776033667774454166448722454374100043346899


Q ss_pred             -----------------------CCCCCCCCEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCC
Q ss_conf             -----------------------222233200003454434466--64444434443333210006765-4577541034
Q gi|255764461|r  149 -----------------------YYNAQHNPVQWMEEEGYFFRL--SAYQDKLLSYYESHPEFILPIER-RNEVISFVKS  202 (511)
Q Consensus       149 -----------------------~~~~~~~p~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~wl~~  202 (511)
                                             +|..|+.|+.+|+++|||+++  +.+++++++-++. ..| .|.+. .+++.+||++
T Consensus       434 ~I~~~L~~~~~Ll~~e~i~H~YPhcWRtk~P~IYRAt~QWF~~~D~~~~k~~~L~~i~~-v~W-~P~~~k~~R~~~~~~n  511 (938)
T TIGR00392       434 IIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKIDEKKIKDQMLEEIKK-VKW-VPEWGKEGRFKNWLEN  511 (938)
T ss_pred             HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCCC-EEE-CCCCCCCHHHHHHHHC
T ss_conf             99999842697788766550587707789845720472214663547778999986283-276-1463221467887611


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC---------------------------------------------------------CC
Q ss_conf             567532343337776578642---------------------------------------------------------22
Q gi|255764461|r  203 GLKDLSLSRKTFDWGIKIPDD---------------------------------------------------------PQ  225 (511)
Q Consensus       203 gl~Dw~ISR~~~~WGipiP~~---------------------------------------------------------~~  225 (511)
                       .+|||||||| +||||||-.                                                         ..
T Consensus       512 -~~DWcISRQR-~WG~PIP~w~~e~~~~~~l~~~gsi~el~~~~~~~~G~~~w~~d~~~~~~d~~~~~~~~g~~~y~r~~  589 (938)
T TIGR00392       512 -RKDWCISRQR-YWGVPIPVWYCEDTGEPVLIVVGSIEELEELIEVEKGIDAWFEDLHKDLLDKITLESGSGGGEYRRVP  589 (938)
T ss_pred             -CCCCEEECCC-CCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             -6765263356-25897406886678832677604089999999987256632223444457741345889984258712


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHHHH--HHHCCCCCCCCCCEEEC-C
Q ss_conf             1464602444322001234676543100024110000456432--10001024776543--31012323334303305-8
Q gi|255764461|r  226 YIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLLSA--NLPLPKKVFSHGFILHK-G  300 (511)
Q Consensus       226 ~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~~~--~~~~p~~i~~~g~l~~~-G  300 (511)
                      .|++||||+...+-++.++..+. ..+...+|+|+..-|-|+.  ||++..--+. +..  |..++|.|++|||++.+ |
T Consensus       590 DvlDVWFDSGs~~~A~~~~~~~~-~~~~~~~pAD~i~EG~DQ~RGWFySsl~~~~-~~~nv~~~PYK~Vi~hGF~LDe~G  667 (938)
T TIGR00392       590 DVLDVWFDSGSMPYAVLHYPFEN-EKFKEVFPADFILEGSDQTRGWFYSSLLIGV-ALFNVGKAPYKNVITHGFTLDEKG  667 (938)
T ss_pred             EEEEEECCCCHHHHHHHHCCCCC-HHHCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHCCCCCCCCEEEECCEEECCCC
T ss_conf             15545114001179986323210-0103578302686033555327799999999-987078854363453154885778


Q ss_pred             CCCCHHHCCCCCCCCHHH--------HCCCCCCCHHHEEE-CCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHH-
Q ss_conf             601000002211100000--------02211121110000-24787301112221110013321102210213455653-
Q gi|255764461|r  301 EKISKSLGNVIDPIEVIE--------EVGVDALRYFLVRE-IACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMIL-  370 (511)
Q Consensus       301 ~KMSKS~GN~I~~~e~l~--------~~g~D~lR~~l~~~-~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~-  370 (511)
                      +|||||+||+|+|.++++        +||||+||||+++. ..+..|+.|+++.+.+. ++.+.+.++|    +.+|+. 
T Consensus       668 ~KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRlyv~~~P~~~~~Dl~~~~~~~~~v-~~~~~~~~~N----~~~Fl~~  742 (938)
T TIGR00392       668 RKMSKSLGNVVDPEKVINGDENLKLPKYGADILRLYVASSPSDYWEDLRFSDEILKQV-AEKYRKIRWN----TYRFLLT  742 (938)
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCHHHHHHH-HHHHHHHHHH----HHHHHHH
T ss_conf             5445325870385997088433588753304877778846874000220066899999-9987688999----9999999


Q ss_pred             -HCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHCC--CHHHCCC
Q ss_conf             -12332103-----45558955656678999999999987750358999999999999--99788654187--0121699
Q gi|255764461|r  371 -KDYDGMIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVS--EVDRYFDAQKP--WELKKTN  440 (511)
Q Consensus       371 -k~~~g~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~--~~N~yi~~~~P--W~l~k~d  440 (511)
                       .++++.-|     +...+.+.|+|++++++++++.++++||+|+|+++++.|++|+.  ..|+||+..++  |.-.+++
T Consensus       743 YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~~v~~~~e~Y~f~~~~~~l~~F~~~~LS~wY~~~~rdr~y~~~~~~  822 (938)
T TIGR00392       743 YANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYIEAKDN  822 (938)
T ss_pred             HHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf             88760778730023112030113999999999999999986263246788889876312000456666543422578981


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             999999999999999999998543224899999998498
Q gi|255764461|r  441 PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFV  479 (511)
Q Consensus       441 ~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~  479 (511)
                       +.+..+..++.++|..++.+|+||+||+||+||+.|-.
T Consensus       823 -~~rr~~q~tL~~~l~~l~~~lAP~~Ph~ae~~y~~l~~  860 (938)
T TIGR00392       823 -DKRRAAQTTLYYALLTLVKLLAPILPHTAEEIYQNLKG  860 (938)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             -78999999999999999998701157999999864240


No 18 
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=634.00  Aligned_cols=472  Identities=25%  Similarity=0.406  Sum_probs=376.8

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CC--------C-----
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-99--------9-----
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GV--------T-----   68 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~--------~-----   68 (511)
                      ++++|+.--+||||||.+|||||.+-++.|++.||+.|+||+|.|+.||||||+|||.+++++ |+        .     
T Consensus        47 g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr  126 (933)
T COG0060          47 GKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFR  126 (933)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCHHHHH
T ss_conf             99808974799977898226566776666634333204588589889976788228899999828763114334899999


Q ss_pred             --HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCC
Q ss_conf             --899999999999999998088988--6747788889999999988875431022110001011334301556672111
Q gi|255764461|r   69 --TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKG  144 (511)
Q Consensus        69 --p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~  144 (511)
                        |+++|.++.+.++++++++|+-.|  +=+.|.++.+.+.+.++|+++++||++|++..+++|||.|++.|++.+|+++
T Consensus       127 ~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~  206 (933)
T COG0060         127 EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG  206 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCHHHHHHCCC
T ss_conf             99999999999999999876367632689803278899999999999999779752277001226877760036664025


Q ss_pred             C-------------------------------------------------------------------------------
Q ss_conf             2-------------------------------------------------------------------------------
Q gi|255764461|r  145 A-------------------------------------------------------------------------------  145 (511)
Q Consensus       145 ~-------------------------------------------------------------------------------  145 (511)
                      .                                                                               
T Consensus       207 d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl  286 (933)
T COG0060         207 DVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL  286 (933)
T ss_pred             CCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEE
T ss_conf             66896289997733578877707999948987731004367679851699997888999829989999987098420776


Q ss_pred             -----------------------------------------------------------------------CC-------
Q ss_conf             -----------------------------------------------------------------------22-------
Q gi|255764461|r  146 -----------------------------------------------------------------------DG-------  147 (511)
Q Consensus       146 -----------------------------------------------------------------------~~-------  147 (511)
                                                                                             +|       
T Consensus       287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~  366 (933)
T COG0060         287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP  366 (933)
T ss_pred             EEEEHHHHCCCEEECCCCCCCCCCEEEEEECCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf             77553662878764887654545604688527672279841056389898789999998299676466688855666543


Q ss_pred             ----------------------------------CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             ----------------------------------2222233200003454434466644444344433332100067654
Q gi|255764461|r  148 ----------------------------------QYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERR  193 (511)
Q Consensus       148 ----------------------------------~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~  193 (511)
                                                        -+|..|++|+.++.++|||++++++++++++-++ ...| .|.+.+
T Consensus       367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~-~v~w-~P~~~~  444 (933)
T COG0060         367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEIN-KVNW-VPDWGK  444 (933)
T ss_pred             HHCCCEECCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHH-CCEE-ECHHHH
T ss_conf             21782400078999999986795315335775798666789806985052033678889999999985-5568-871578


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----------------------------------------C----C---
Q ss_conf             577541034567532343337776578642-----------------------------------------2----2---
Q gi|255764461|r  194 NEVISFVKSGLKDLSLSRKTFDWGIKIPDD-----------------------------------------P----Q---  225 (511)
Q Consensus       194 ~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~-----------------------------------------~----~---  225 (511)
                      +++.+|+++ .+|||||||| +||+|||-.                                         +    +   
T Consensus       445 ~R~~~mve~-r~DW~ISRQR-~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~  522 (933)
T COG0060         445 NRFGNMVEN-RPDWCISRQR-YWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEY  522 (933)
T ss_pred             HHHHHHHCC-CCCCEEECCC-CCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCCCCCCCEE
T ss_conf             999999718-9864365166-67885337998899974232899999998774321726651563476457888876505


Q ss_pred             ----CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf             ----1464602444322001234676543100024110000456432--1000102477654331012323334303305
Q gi|255764461|r  226 ----YIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLLSANLPLPKKVFSHGFILHK  299 (511)
Q Consensus       226 ----~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~  299 (511)
                          .|++||||+...+.++.+ . .++..+...| +|+..-|-|+.  |||+.+--+.. ..|.++++++++|||++.+
T Consensus       523 ~rv~DvlDVWFDSGs~~~a~~~-~-~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a-~~~~aPYk~vltHGfvlDe  598 (933)
T COG0060         523 RRVPDVLDVWFDSGSTPYAVLH-P-RENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTA-LFGRAPYKNVLTHGFVLDE  598 (933)
T ss_pred             EECCCCEEEEECCCCCCCCCCC-C-CCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHHH-HCCCCHHHHHHHCCCEECC
T ss_conf             9657546888737897111107-7-5444676555-757997066552268999999999-7288507877632617888


Q ss_pred             -CCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
Q ss_conf             -8601000002211100000022111211100002478730111222111001332110221021345565312332103
Q gi|255764461|r  300 -GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIP  378 (511)
Q Consensus       300 -G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip  378 (511)
                       |+|||||+||+|+|.+++++||||+||+|+++. +++.|+.||++.+.+  .++..++++|    +.+|+..|.++.-|
T Consensus       599 ~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ss-d~~~dl~~s~~il~~--~~~~~r~irN----t~rF~l~nl~~fdp  671 (933)
T COG0060         599 KGRKMSKSLGNVVDPQDVIDKYGADILRLWVASS-DYWEDLRFSDEILKQ--VREVYRKIRN----TYRFLLGNLDDFDP  671 (933)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCHHEEEEEEEC-CCHHCCCCCHHHHHH--HHHHHHHHHH----HHHHHHHHCCCCCC
T ss_conf             8887655578818989998762763404665615-823032027889999--9999999999----99999885058994


Q ss_pred             CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCC--CHHHCCCHH--HHHHH
Q ss_conf             45-----55895565667899999999998775035899999999999--999788654187--012169999--99999
Q gi|255764461|r  379 TP-----GAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKP--WELKKTNPD--RASTV  447 (511)
Q Consensus       379 ~~-----~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~P--W~l~k~d~~--~~~~v  447 (511)
                      +.     ..+...|+|++++++++.++++++|++|+|+++++.+++|+  +..|.|++..+.  |.-+.++.+  .++++
T Consensus       672 ~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~  751 (933)
T COG0060         672 KKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTT  751 (933)
T ss_pred             CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             21335144423217999999999999999999846799999999999885665889888788764047999889999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCCC
Q ss_conf             999999999999985432248999999984988--000795551012
Q gi|255764461|r  448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQR  492 (511)
Q Consensus       448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~~  492 (511)
                      ||.   ++..++++|+||+||+||+||+.|...  .++....++.+.
T Consensus       752 Ly~---il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~  795 (933)
T COG0060         752 LYH---ILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEV  795 (933)
T ss_pred             HHH---HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf             999---99999999710103659999974766788753670357655


No 19 
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR.  Consequently, the MetRS insertion lacks the editing function.
Probab=100.00  E-value=0  Score=646.58  Aligned_cols=316  Identities=50%  Similarity=0.931  Sum_probs=300.0

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             17997888999988322247897899999999885898036236437022799999998399989999999999999999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMAD   85 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~   85 (511)
                      ||+||+|||||||+||||||++++.+|+++||+|++||+|.||||+|+||+||+.+|+++|++|+|++++|+++|+++|+
T Consensus         1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~   80 (319)
T cd00814           1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFK   80 (319)
T ss_pred             CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             98996899878898553306889999999999996599569968777870899999998399879999999999999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf             80889886747788889999999988875431022110001011334301556672111222222223320000345443
Q gi|255764461|r   86 VLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGY  165 (511)
Q Consensus        86 ~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~  165 (511)
                      +|||++|.|+||++++|.+.+++++++|.++|++|+++..++||+.|++|++                    +++++.||
T Consensus        81 ~L~I~~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~--------------------e~~~~~~~  140 (319)
T cd00814          81 WLNISFDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------EWREEEHY  140 (319)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCC--------------------EEEECCCE
T ss_conf             8499878676678806899999999999978988884102636588764564--------------------66422637


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf             44666444443444333321000676545775410345675323433377765786422214646024443220012346
Q gi|255764461|r  166 FFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYL  245 (511)
Q Consensus       166 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~  245 (511)
                      ||+++++++.+.+++++++...+|...++...+|++++++||||||++..||+|+|++++|++||||||++||+++.+++
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~  220 (319)
T cd00814         141 FFRLSKFQDKLLEWLEENPDFIWPENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYY  220 (319)
T ss_pred             EEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCC
T ss_conf             87889978999999960987646805778887765437772001035554589888988854300210123400014666


Q ss_pred             CCCCCCCCC---CCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCC
Q ss_conf             765431000---24110000456432100010247765433101232333430330586010000022111000000221
Q gi|255764461|r  246 DNPDGSKAK---FWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGV  322 (511)
Q Consensus       246 ~~~~~~~~~---~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~  322 (511)
                      ....+....   .++.++|++|+||++||+++|||++++.+.++|+++++||||+++|+|||||+||+|+++|++++||+
T Consensus       221 ~~~~~~~~~~~~~~~~~ih~~G~Di~~~H~~~~~a~~~a~~~~~~~~~~~~g~l~~~GeKMSKSlGN~i~~~dll~~~~~  300 (319)
T cd00814         221 TDEWGNSWWWNDPWPELVHFIGKDIVPFHAIYWPAMLLGAGLPLPTRIFAHGYLTVEGKKMSKSRGNVVDPDDLLERYGA  300 (319)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEECCEECCCCCCCCCCHHHHHHHCCC
T ss_conf             66568764445688412678447643188878999998569987868887023998994637729974459999987791


Q ss_pred             CCCCHHHEEECCCCCCCEE
Q ss_conf             1121110000247873011
Q gi|255764461|r  323 DALRYFLVREIACGKDGFY  341 (511)
Q Consensus       323 D~lR~~l~~~~~~~~D~~F  341 (511)
                      |++||||++.+|+++|.||
T Consensus       301 d~lR~~lls~~p~~~~~~F  319 (319)
T cd00814         301 DALRYYLLRERPEGKDSDF  319 (319)
T ss_pred             HHEHHHHHCCCCCCCCCCC
T ss_conf             3566877616888899999


No 20 
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00  E-value=0  Score=629.13  Aligned_cols=452  Identities=24%  Similarity=0.387  Sum_probs=338.0

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             88881799788899998832224789789999999988589803623643702279999999839998999999999999
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      ++++|+||+.++|||||.|||||+++|+..|+++||+||+|++|+++.|||+||+|++..|.+.|++|++++.++.+.|+
T Consensus        29 ~~~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~GwD~~GLPaE~~aik~~~~p~~~t~~nI~~~k  108 (822)
T PRK00390         29 DSKPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK  108 (822)
T ss_pred             CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             78998079377999898611325564789999999987189963898973668868989999949988999999999999


Q ss_pred             HHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC
Q ss_conf             999980889886--747788889999999988875431022110001011334301556672111222222223320000
Q gi|255764461|r   82 DMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW  159 (511)
Q Consensus        82 ~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~  159 (511)
                      ++++++|+++|+  -..|++|++.+++|++|.+|+++|+||++..+++|||.|++.|++.+|..|    .|+.|+.||+.
T Consensus       109 ~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~~l~ekGliyr~~~~V~Wcp~~~T~LAn~eV~~G----~~~r~~~~V~~  184 (822)
T PRK00390        109 KQLKSLGFSYDWSREIATCDPEYYKWTQWLFLKLYEKGLAYRKESPVNWCPVDQTVLANEQVIDG----RSWRSGAPVEK  184 (822)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHCCC----CCCCCCCEEEE
T ss_conf             99998395430689877578779999999999999889979523242007976877650444147----64346870466


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC----------------------------------------CCCCCC--------CHH-
Q ss_conf             3454434466644444344433----------------------------------------332100--------067-
Q gi|255764461|r  160 MEEEGYFFRLSAYQDKLLSYYE----------------------------------------SHPEFI--------LPI-  190 (511)
Q Consensus       160 ~~~~~~f~~l~~~~~~l~~~~~----------------------------------------~~~~~~--------~p~-  190 (511)
                      ++.++||+++++|+++|++-++                                        +.|..+        .|+ 
T Consensus       185 k~~~qw~~kit~Ya~~Ll~~l~~l~~wP~~vk~mQ~nWIG~s~g~~v~F~~~~~~~~l~v~TTrP~Tl~G~t~~~v~p~h  264 (822)
T PRK00390        185 KELPQWFLKITDYADELLDDLDELDGWPEKVKTMQRNWIGRSEGAEVTFKVKGSDEKLEVFTTRPDTLFGATYLVLAPEH  264 (822)
T ss_pred             EECCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEECCHHHHCCCCEEEEECCC
T ss_conf             30440355200758887502100246607776653043342000798633169985599996883352286279993797


Q ss_pred             ---------------------------------------------------------------------------H----
Q ss_conf             ---------------------------------------------------------------------------6----
Q gi|255764461|r  191 ---------------------------------------------------------------------------E----  191 (511)
Q Consensus       191 ---------------------------------------------------------------------------~----  191 (511)
                                                                                                 +    
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ek~G~~~G~~~~~P~~~~~iPI~~ad~V~~~~GTG~V~~~PaHd~~D  344 (822)
T PRK00390        265 PLAEKLAEQNPAVAAFIEECKNKSDLERTLATKEKTGVFTGLYAIHPLTGEKIPVWIANYVLMDYGTGAVMAVPAHDQRD  344 (822)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCEEECEECCCEEECCCCCCEEEEEEECCCCCCCCCCCEEECCCCCHHH
T ss_conf             89999984489999999998712436665531501010058589777889655699625252457877267568788789


Q ss_pred             -------------------------------------------HHHHHHHHCC-C---------CCCCCCCCCCCCCCCC
Q ss_conf             -------------------------------------------5457754103-4---------5675323433377765
Q gi|255764461|r  192 -------------------------------------------RRNEVISFVK-S---------GLKDLSLSRKTFDWGI  218 (511)
Q Consensus       192 -------------------------------------------~~~~~~~wl~-~---------gl~Dw~ISR~~~~WGi  218 (511)
                                                                 +++.+.++|+ .         -|+|||||||| |||+
T Consensus       345 ~~~a~k~~Lpi~~Vi~~~~~~~~~~~~G~lins~~~~Gl~~~eA~~~ii~~L~~~g~g~~~i~yrLRDW~iSRQR-yWG~  423 (822)
T PRK00390        345 FEFAKKYGLPIKQVIGGDVSEEAYTEDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQR-YWGE  423 (822)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEECCC-CCCC
T ss_conf             999998299824763788766545577148763421786468899999999997799866341012663221120-2578


Q ss_pred             CCCCC-----------------------------------------------------CCCCCCCCHHHHHHHHCC---C
Q ss_conf             78642-----------------------------------------------------221464602444322001---2
Q gi|255764461|r  219 KIPDD-----------------------------------------------------PQYIMYVWIDALTNYLTT---T  242 (511)
Q Consensus       219 piP~~-----------------------------------------------------~~~~~YVWfDa~~gY~s~---~  242 (511)
                      |||-.                                                     +..|+.||||+.+ |...   .
T Consensus       424 PIPi~~c~~~~~v~v~e~~Lpv~LPe~~~~~~~g~~PL~~~~~w~~~~c~~~g~~~~RetDt~DtW~dSsW-Y~~ry~~p  502 (822)
T PRK00390        424 PIPIIHCEDCGVVPVPEDDLPVVLPEDVVPDGTGESPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSW-YYLRYTDP  502 (822)
T ss_pred             CEEEEEECCCCEEEEEHHHCCCCCHHHEECCCCCCCHHHHCCCCEEEECCCCCCCCEECCCCCCEEECCCC-EEEECCCC
T ss_conf             40389957897787107875534600130068899946847001752147778721453531020113544-00001577


Q ss_pred             C---CCCCCCCCCCCCCCCCHHCCCCCCCCHHC---CHHHHHHHHHHH----HCCCCCCCCCCEEE--------------
Q ss_conf             3---46765431000241100004564321000---102477654331----01232333430330--------------
Q gi|255764461|r  243 G---YLDNPDGSKAKFWPADLHVIGKDILRFHA---IYWPAFLLSANL----PLPKKVFSHGFILH--------------  298 (511)
Q Consensus       243 ~---~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~---i~~pa~l~~~~~----~~p~~i~~~g~l~~--------------  298 (511)
                      +   ...+ ...+..|+|.|.+..|.+-.--|-   -+|-..|..+|.    .+++++++||||+.              
T Consensus       503 ~~~~~~~d-~~~~~yw~PvD~YigG~EHailHLlYsRF~~~~l~dlg~~~~~ePF~~l~~qGmVl~~~~~~~~~~~~~~~  581 (822)
T PRK00390        503 HNDEAMFD-KEAANYWLPVDQYIGGIEHAVLHLLYARFFHKVLRDLGLVSSDEPFKKLLTQGMVLGETYYDERGNWVSPA  581 (822)
T ss_pred             CCCCCCCC-HHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCEEECCCCCCCCCCCCCHH
T ss_conf             64446679-77886028961401644566778888889999998716755677757750445684254444567766601


Q ss_pred             -----------CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf             -----------586010000022111000000221112111000024787301112221110013321102210213455
Q gi|255764461|r  299 -----------KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS  367 (511)
Q Consensus       299 -----------~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~  367 (511)
                                 +|+|||||+||+|+|.+++++||||++|+|+++.+|+.+|.+|+.+++....+  ++++++|++..   
T Consensus       582 ~v~~~~~~~~~~g~KMSKSkGNvv~P~~ii~~yGADalRl~~l~~ap~~~d~~ws~~~i~g~~r--fl~rlw~~~~~---  656 (822)
T PRK00390        582 DVEVERDEKRIGGIKMSKSKGNVVDPDDIIDKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYR--FLQRVWRLVYD---  656 (822)
T ss_pred             HEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHC---
T ss_conf             1242045567677616765789689899987548079999999608856661204878999999--99999997304---


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH
Q ss_conf             65312332103455589556566789999999999877503589999999999999978865418701216999999999
Q gi|255764461|r  368 MILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTV  447 (511)
Q Consensus       368 f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~v  447 (511)
                                .........|+++++++++++++++++||+|+|+.|++.+|+|++...++               ....+
T Consensus       657 ----------~~~~~~~~~d~~l~~~l~~~I~~vt~~~e~~~fn~ai~~l~~f~N~l~k~---------------~~~~~  711 (822)
T PRK00390        657 ----------EGAVAALEADKELRRALHKTIKKVTEDIERLRFNTAIAALMELVNALSKA---------------PDRAV  711 (822)
T ss_pred             ----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf             ----------44556872319999999999999999997667769999999999999872---------------51899


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC--CCCHHHHCCCC
Q ss_conf             99999999999998543224899999998498800--07955510126
Q gi|255764461|r  448 LYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE--NRCFQSLDQRL  493 (511)
Q Consensus       448 l~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~--~~~~~~~~~~l  493 (511)
                      ++   +++..+++||+||+||+|||||+.||.+..  ...|+..++.+
T Consensus       712 l~---~~l~~l~rlLaPf~PhiaEElW~~Lg~~~sV~~~~WP~~de~~  756 (822)
T PRK00390        712 LR---EALEILVRLLAPFAPHIAEELWQELGHEGSIANAPWPEVDEAA  756 (822)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH
T ss_conf             99---9999999999878899999999977999856458999678788


No 21 
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=617.99  Aligned_cols=475  Identities=23%  Similarity=0.380  Sum_probs=373.2

Q ss_pred             CCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9888817997888999988-322247897899999999885898036236437022799999998399989999999999
Q gi|255764461|r    1 MKEREKLYISTAIAYPNAQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRN   79 (511)
Q Consensus         1 m~~~~~~~vt~~~Py~ng~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~   79 (511)
                      +++++||||-+..|||+|. |||||.|+|+.+||++||+||+||+|+++.|||.+|+|.|..|.+.|+.|..+++++.+.
T Consensus        27 i~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDAFGLPAEnaAI~~~~~P~~WT~~NI~~  106 (916)
T TIGR00396        27 ISNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIAN  106 (916)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             45578646623787956077501651423576499999986288324766757456425899986489870037899999


Q ss_pred             HHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCC-CCCCCCCCC
Q ss_conf             99999980889886--747788889999999988875431022110001011334301556672111222-222223320
Q gi|255764461|r   80 FRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADG-QYYNAQHNP  156 (511)
Q Consensus        80 ~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~-~~~~~~~~p  156 (511)
                      |+++++.||.+||+  -.+|++|+|++++|+||.+|+++|++|+++..++|||.++|-||..+|.-.++| .+|++|+.+
T Consensus       107 m~~Ql~~LGf~yDw~RE~~T~~P~YYkwtQWiF~~Lf~kGLaY~ke~~VNWCP~d~TVLANEqVi~DS~Gna~SwR~~~~  186 (916)
T TIGR00396       107 MKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEATVNWCPNDGTVLANEQVIIDSDGNARSWRGGTP  186 (916)
T ss_pred             HHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHEEECCCCCCEEECCCCC
T ss_conf             99999984556441105323888743366688899976285276311133067778451020301227898532248784


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CC-------------------------------
Q ss_conf             000345443446664444434443333210006765457754103--45-------------------------------
Q gi|255764461|r  157 VQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK--SG-------------------------------  203 (511)
Q Consensus       157 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~--~g-------------------------------  203 (511)
                      ||.++.+|||+++++|+|+|++-+++-++. ||+.+|..=.||+-  .|                               
T Consensus       187 Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~-WP~~VK~MQrNWIGkS~Gv~~~F~i~d~clkacn~~e~i~VFTTRPdT~  265 (916)
T TIGR00396       187 VEKKELKQWFLKITAYAEELLNDLEELDDH-WPESVKEMQRNWIGKSEGVEITFKIADHCLKACNKKEKIAVFTTRPDTI  265 (916)
T ss_pred             EEEEECCCCEEHHHHHHHHHHHHHHCCCCC-CCHHHHHCCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEEEEECCCCCE
T ss_conf             466306751011337889854114204678-8731364045456555204899742573121037875169986686301


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  204 --------------------------------------------------------------------------------  203 (511)
Q Consensus       204 --------------------------------------------------------------------------------  203 (511)
                                                                                                      
T Consensus       266 fGvtYlalA~~HpLv~~~~~~~~~~~v~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~AihPlT~e~iPiwvAnYVl~~YG  345 (916)
T TIGR00396       266 FGVTYLALAPEHPLVEKIAKNNPKEEVAAFIKKIAQKSDLERTKETKEKKGVFTGIYAIHPLTGEKIPIWVANYVLASYG  345 (916)
T ss_pred             EEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEECEEECCCC
T ss_conf             00265766157858999974084678999999987307055556642014646686363476776445576330011578


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  204 --------------------------------------------------------------------------------  203 (511)
Q Consensus       204 --------------------------------------------------------------------------------  203 (511)
                                                                                                      
T Consensus       346 TgPsAVMGVPaHDeRDF~FA~~~~Lpi~~Vi~~~~~~~~~~~~~~A~t~~g~~~ns~tstdGvltkeC~~f~Gl~~~~A~  425 (916)
T TIGR00396       346 TGPSAVMGVPAHDERDFEFAQKYKLPIKVVIDPADADGKNLKLEQAYTEDGVLVNSSTSTDGVLTKECGEFNGLNSSEAK  425 (916)
T ss_pred             CCCHHCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf             98502035888874127999857897158752777667511566767646522168765344101000222377617899


Q ss_pred             --------------------CCCCCCCCCCCCCCCCCCC-----------------------------------------
Q ss_conf             --------------------6753234333777657864-----------------------------------------
Q gi|255764461|r  204 --------------------LKDLSLSRKTFDWGIKIPD-----------------------------------------  222 (511)
Q Consensus       204 --------------------l~Dw~ISR~~~~WGipiP~-----------------------------------------  222 (511)
                                          |+||-||||| |||-|||-                                         
T Consensus       426 ~~I~~~L~~~~~gk~~v~YrLRDW~~SRQR-YWG~PIPiih~e~g~~~P~~~~dLPv~LP~~~~~~~~G~~~sPL~~~~~  504 (916)
T TIGR00396       426 EAIIKMLEKEGKGKRKVNYRLRDWLFSRQR-YWGEPIPIIHCEDGGAVPVPEEDLPVKLPELVNYDGSGTGESPLSRIKE  504 (916)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEECCCEEEEC-CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             999999986388502123465325344000-2688987788067684244344687107500235788898880430746


Q ss_pred             --------------CCCCCCCCCHHHHH---HHHCCCCCC----CC---CCCCCCCCCCCCHHCCCCCCCCHHCC---HH
Q ss_conf             --------------22214646024443---220012346----76---54310002411000045643210001---02
Q gi|255764461|r  223 --------------DPQYIMYVWIDALT---NYLTTTGYL----DN---PDGSKAKFWPADLHVIGKDILRFHAI---YW  275 (511)
Q Consensus       223 --------------~~~~~~YVWfDa~~---gY~s~~~~~----~~---~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~  275 (511)
                                    .|--|+..|.|+..   +|+.-.++-    .+   +....++|-|.|+++.|-+=.--|-|   ||
T Consensus       505 W~~v~~~~~~~~A~RETdTMdtf~~SsWYylRY~~p~~n~~FWPi~~~~d~e~~~~wlPVD~YiGG~EHAiLHLLY~RF~  584 (916)
T TIGR00396       505 WVNVTCPSCGKPALRETDTMDTFIGSSWYYLRYLDPKNNTNFWPIDQPFDKEKAEYWLPVDLYIGGIEHAILHLLYARFF  584 (916)
T ss_pred             CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf             32414788798754337876305777899986035001766687321302788975588441026268998998888999


Q ss_pred             HHHHHHH-------HH-HCCCCCCCCCCEEE--------CCC------------------------------------CC
Q ss_conf             4776543-------31-01232333430330--------586------------------------------------01
Q gi|255764461|r  276 PAFLLSA-------NL-PLPKKVFSHGFILH--------KGE------------------------------------KI  303 (511)
Q Consensus       276 pa~l~~~-------~~-~~p~~i~~~g~l~~--------~G~------------------------------------KM  303 (511)
                      -=+|...       |+ .|++.+++.|||+-        +|+                                    ||
T Consensus       585 hK~L~D~g~v~~PaGi~EPFkKL~~QGMVlg~~f~y~~~~g~~~W~~p~d~~~~~d~~~d~~~~~d~~~~~~~~~~~~KM  664 (916)
T TIGR00396       585 HKFLYDLGLVSTPAGIKEPFKKLINQGMVLGDAFYYKKPNGKRIWVVPADELIERDEKGDIKKAKDKSGGELVVVGYEKM  664 (916)
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHCCEEECCCEEECCCCCCEEEEECCCCEEECCCCCCCCCCEECCCCCEEEEEEEEE
T ss_conf             99997457615877665714554200002116134138997367764575166104667865423258882478877762


Q ss_pred             CHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHH-CC---CCCCCC
Q ss_conf             00000221110000002211121110000247873011122211100133211022102134556531-23---321034
Q gi|255764461|r  304 SKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILK-DY---DGMIPT  379 (511)
Q Consensus       304 SKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k-~~---~g~ip~  379 (511)
                      ||||||+|+|.+++++||||++|+|+|..+|...++.++++++....+  +.++++||+.....-... .+   ....-.
T Consensus       665 SKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P~~~~L~W~~~g~~G~~R--FL~RVw~l~~~~~~~~~~~~~avrP~~~~~  742 (916)
T TIGR00396       665 SKSKGNGIDPQEIVKKYGADALRLFIMFMGPIAASLEWNESGLEGARR--FLDRVWNLVKEILGELSGIISAVRPKTELT  742 (916)
T ss_pred             CCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHH--HHHHHHHHHHHHCCCHHHEEEEECCCCCCC
T ss_conf             023679887038974048027999997048831414777111013568--889999999873266000255424610034


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             555895565667899999999998775035--899999999999999788654187012169999999999999999999
Q gi|255764461|r  380 PGAFTESDESILSVCSRVLQEIRENMQNQL--IHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQ  457 (511)
Q Consensus       380 ~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~--~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~  457 (511)
                      ...++..++.+...++++++++++.+|..+  |+.|+.++|.|++.+-+.-          .+.+ ...   +.++.+..
T Consensus       743 ~~~l~~~~~~~~~~~~~~lk~v~e~~~~~~~~fNT~IS~~M~l~N~L~k~~----------~~ge-~~~---~~~e~~~~  808 (916)
T TIGR00396       743 ETALEEAQKELRREVHKFLKKVTEDLEKLELSFNTAISAMMELLNALYKAT----------KDGE-DRA---LYLEYLKG  808 (916)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC----------CCCH-HHH---HHHHHHHH
T ss_conf             311230468999999999988875317620135589999999999987310----------2341-158---89999998


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCCCC---CCCCHHHHCCCC
Q ss_conf             999854322489999999849880---007955510126
Q gi|255764461|r  458 LAILLQAFVPKLANKIFDILFVAD---ENRCFQSLDQRL  493 (511)
Q Consensus       458 l~ilL~Pi~P~~ae~i~~~Lg~~~---~~~~~~~~~~~l  493 (511)
                      +..+|+||+||+|||+|+.||...   ++..|+.+|+..
T Consensus       809 ~~~~L~P~aPhlaeELwe~lg~~~~~~~~~~w~~~D~~~  847 (916)
T TIGR00396       809 LVTVLSPFAPHLAEELWEKLGSEPSIIKQAKWPKVDETA  847 (916)
T ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCHHHCHHH
T ss_conf             998851520168999999857770015441120212465


No 22 
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=620.45  Aligned_cols=303  Identities=27%  Similarity=0.464  Sum_probs=269.9

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCC---------------
Q ss_conf             8179978889999883222478978999999998858980362364370227999999983-999---------------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVT---------------   68 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~---------------   68 (511)
                      |+|+||||+|||||+||||||++++++|+++||+||+|++|+|+||+|+||+||+.+|+++ ++.               
T Consensus         1 k~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek~~~~~~~~~~~~~~~~f~~~   80 (363)
T cd00817           1 EPFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK   80 (363)
T ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHH
T ss_conf             98599489998888613527898999999999998169977887845756689999999983605665000798999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC
Q ss_conf             899999999999999998088988--674778888999999998887543102211000101133430155667211122
Q gi|255764461|r   69 TKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD  146 (511)
Q Consensus        69 p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~  146 (511)
                      +.++++++++.++++++++|+++|  .|+||++++|++.+|++|.+|+++|+||++.+++.|                  
T Consensus        81 ~~~~~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~------------------  142 (363)
T cd00817          81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNW------------------  142 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECC------------------
T ss_conf             99999999999999999833011657503437767999999999999988897636824573------------------


Q ss_pred             CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf             22222233200003454434466644444344433332100067654577541034567532343337776578642---
Q gi|255764461|r  147 GQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDD---  223 (511)
Q Consensus       147 ~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~---  223 (511)
                               |+|...++||||+++++++++++++++++..+.|+.+++++.+|+++ |+|||||||+ +||+|||..   
T Consensus       143 ---------~ve~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~ISR~~-~WG~piP~~~~~  211 (363)
T cd00817         143 ---------VIEPLLKPQWFVKVKDLAKAALEAVKEGDIKFVPERMEKRYEDWLEN-IRDWCISRQL-WWGHRIPAWYCE  211 (363)
T ss_pred             ---------EEEEEECCEEEEECHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHC-CCCCCCCHHC-CCCCCCCEEECC
T ss_conf             ---------77998776168987788999999996299778578999999999851-5765331000-136666614627


Q ss_pred             ---------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf             ---------------------------------22146460244432200123467654310002411000045643210
Q gi|255764461|r  224 ---------------------------------PQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRF  270 (511)
Q Consensus       224 ---------------------------------~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~F  270 (511)
                                                       +..|+||||||+++|+++.+|+.+ ...++.+||+++|++||||++|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~dvWfds~~~~~~~~~~~~~-~~~~~~~~p~d~~~~GkDIirf  290 (363)
T cd00817         212 DCGHWVVAREEEEAVDPAIPEACCPCGSEELEQDTDVLDTWFSSSLWPFSTLGWPEE-TKDLKKFYPTSLLPTGHDIIFF  290 (363)
T ss_pred             CCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCC-CCHHHHCCCCCEEEEEEHHHHH
T ss_conf             898477067336411124320478887211303677653044524772255089743-3145407876378762388746


Q ss_pred             HCCHHHHHHHHHHH----HCC-CCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             00102477654331----012-3233343033-05860100000221110000002211121110000247873011
Q gi|255764461|r  271 HAIYWPAFLLSANL----PLP-KKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       271 h~i~~pa~l~~~~~----~~p-~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
                          ||+++++.+.    ++| ++|++|||++ .+|+|||||+||+|+|.+++++||+|++||||++.+|.++|+||
T Consensus       291 ----W~~~~~~~~~~l~~~~P~~~v~~HG~vl~~~G~KMSKS~GNvv~p~~~l~~yg~D~lRy~l~~~~~~~~D~~~  363 (363)
T cd00817         291 ----WVARMIMRGLELTGKLPFKEVYIHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAASQGRDINL  363 (363)
T ss_pred             ----HHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             ----9999999876624898865668786289999887578899866989999877927999999952998777898


No 23 
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=606.37  Aligned_cols=304  Identities=27%  Similarity=0.451  Sum_probs=265.6

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCH--------------
Q ss_conf             8179978889999883222478978999999998858980362364370227999999983-9998--------------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTT--------------   69 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p--------------   69 (511)
                      ++|+|++|||||||+||||||++++++|+++||+||+|++|+|+||+|+||+||+++|+++ |+++              
T Consensus         1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~   80 (339)
T cd00818           1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA   80 (339)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf             95599589988578734558899999999999998069988778851440399999999964898730476559999999


Q ss_pred             --HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC
Q ss_conf             --99999999999999998088988--67477888899999999888754310221100010113343015566721112
Q gi|255764461|r   70 --KVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA  145 (511)
Q Consensus        70 --~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~  145 (511)
                        +++++++.+.++++++++|+..|  ...+|++++|.+.++++|++|+++|+||++..+++|                 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~-----------------  143 (339)
T cd00818          81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW-----------------  143 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf             999999999999999999837351477771216889999999999999988886267605368-----------------


Q ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             22222223320000345443446664444434443333210006765-457754103456753234333777657864--
Q gi|255764461|r  146 DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIER-RNEVISFVKSGLKDLSLSRKTFDWGIKIPD--  222 (511)
Q Consensus       146 ~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~--  222 (511)
                                |+++++++||||++++++++|++++++. .++ |+.. ..++.+|+++ |+||||||++ +||||||.  
T Consensus       144 ----------p~~~~~~~~~F~~l~~~~~~ll~~~~~~-~~~-p~~~~~~~l~~~~~~-l~Dw~ISR~~-~WGipvP~w~  209 (339)
T cd00818         144 ----------PLIYRATPQWFIRVEKLKDRLLEANDKV-NWI-PEWVKEGRFGNWLEN-RRDWCISRQR-YWGTPIPVWY  209 (339)
T ss_pred             ----------CCCCEECCCEEEECHHHHHHHHHHHHCC-CEE-CCHHHHHHHHHHHHC-CCCCEEEECC-CCCCCCCEEE
T ss_conf             ----------7600581567998689999999877538-737-861066499999716-8565044026-6675346356


Q ss_pred             --CC--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--HHCCHHHHHHHHHHHHCCCCC
Q ss_conf             --22--------214646024443220012346765431000241100004564321--000102477654331012323
Q gi|255764461|r  223 --DP--------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKV  290 (511)
Q Consensus       223 --~~--------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~--Fh~i~~pa~l~~~~~~~p~~i  290 (511)
                        +.        .+|+||||||+++|++..++..+ +..+.++||.++|++||||++  ||+++|||+++. +..++++|
T Consensus       210 ~~~~~~~~~~~~~dv~yVWfDa~~~~~~~~~~~~~-~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~-~~~P~~~v  287 (339)
T cd00818         210 SEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFE-NEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF-GKAPYKNV  287 (339)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCC-CHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCCEE
T ss_conf             48998321003650177776356248987289864-31341387660566063312337999999878854-89985214


Q ss_pred             CCCCCEE-ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             3343033-05860100000221110000002211121110000247873011
Q gi|255764461|r  291 FSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       291 ~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
                      ++|||++ .+|+|||||+||+|+|.|++++||+|++||||++.+|+++|++|
T Consensus       288 ~~hg~~l~~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F  339 (339)
T cd00818         288 IVHGFVLDEDGRKMSKSLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF  339 (339)
T ss_pred             EECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             8898499999866278899878989999876947999999916888889999


No 24 
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00  E-value=0  Score=585.47  Aligned_cols=441  Identities=24%  Similarity=0.354  Sum_probs=320.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC---------------C---------CCHHHHHHH
Q ss_conf             3222478978999999998858980362364370227999999983---------------9---------998999999
Q gi|255764461|r   20 PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA---------------G---------VTTKVFVDQ   75 (511)
Q Consensus        20 lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~---------------g---------~~p~e~~~~   75 (511)
                      |||||+++|+..|+++||+||+|++|+|+.|||+||+||+..|++.               |         .+|+.++++
T Consensus         1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~~~   80 (888)
T PRK12300          1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAERIAEGDPETIDIYRNLYGIPEEEIEKFKDPEYIVEY   80 (888)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             94055478799999999998079977999988889953899999986044468999877513668888875009999999


Q ss_pred             HHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCC-----
Q ss_conf             999999999980889886--7477888899999999888754310221100010113343015566721112222-----
Q gi|255764461|r   76 NSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQ-----  148 (511)
Q Consensus        76 ~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~-----  148 (511)
                      +.+.++++++++|+++|+  -..|++|++.+++|++|.+|+++|+||++..+++|||.|++.+++.++..+....     
T Consensus        81 ~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP~~~T~la~~ev~~~~~~~~~~~~  160 (888)
T PRK12300         81 FSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCPKDENPVGDHDTKDGEEPTIGEYT  160 (888)
T ss_pred             HHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf             99999999998386063699866488879999999999999779949787786725987848222055508775516899


Q ss_pred             ----------------------------------C---------------------------------------------
Q ss_conf             ----------------------------------2---------------------------------------------
Q gi|255764461|r  149 ----------------------------------Y---------------------------------------------  149 (511)
Q Consensus       149 ----------------------------------~---------------------------------------------  149 (511)
                                                        +                                             
T Consensus       161 ~ikf~~~~~~l~v~TTrPeTl~g~ta~~v~Pd~~Yv~~~~~~e~~i~~~~~~~~l~~~~~~~~~~~~~~g~~l~G~~~~~  240 (888)
T PRK12300        161 LIKFEGDDLILPAATLRPETVFGVTNLWVNPDAEYVVAEVDGEKWIVSKEAARKLSFQDREVEIIEEIKGSELIGKKVKN  240 (888)
T ss_pred             EEEECCCCEEEEEEECCHHHHHHHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCEECCEEEEC
T ss_conf             99971798279997268025430000377776323456427720089999999986222113675320263303508986


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  150 --------------------------------------------------------------------------------  149 (511)
Q Consensus       150 --------------------------------------------------------------------------------  149 (511)
                                                                                                      
T Consensus       241 P~~~~~ipI~~ad~V~~~~GTG~V~~vPaHd~~Dy~~~~~~~~~~~~~i~ii~v~~~g~~p~~~~~~~~~i~~~~d~~l~  320 (888)
T PRK12300        241 PVTGKEVPILPAKFVDPDNGTGVVMSVPAHAPYDYVALRDLDVEEIELIPLIKVEGYGEFPAKEIVEKMGIKSQKDPELE  320 (888)
T ss_pred             CCCCCEEEEEECCEECCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHH
T ss_conf             78898735986140747889772896578987789999860724246777232056677527777775077664423477


Q ss_pred             --------------------------------------------------------CCCCCCCEECC-CCCCCCCCCC--
Q ss_conf             --------------------------------------------------------22233200003-4544344666--
Q gi|255764461|r  150 --------------------------------------------------------YNAQHNPVQWM-EEEGYFFRLS--  170 (511)
Q Consensus       150 --------------------------------------------------------~~~~~~p~~~~-~~~~~f~~l~--  170 (511)
                                                                              |+.||+|+... .+.|||++++  
T Consensus       321 ~a~~~~y~~e~~~G~l~~~~~~~~G~~v~eA~~~i~~~L~~~g~~~~~y~~~~~~v~~R~g~~~v~~~~~dQWFi~~~~~  400 (888)
T PRK12300        321 EATKELYKAEFHKGVLREDTGEYAGKPVREAREKITEDLIESGIAEIMYEFSEKPVYCRCGTECVVKVVKDQWFIDYSNP  400 (888)
T ss_pred             HHHHHHHHHHHCCCEECCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCH
T ss_conf             77665422231175341565110697999999999999997799740303577886789998676341687641047876


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHC--------
Q ss_conf             444443444333321000676545775410345675323433377765786422214646024443--2200--------
Q gi|255764461|r  171 AYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALT--NYLT--------  240 (511)
Q Consensus       171 ~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~--gY~s--------  240 (511)
                      .+++...+.++. .. +.|...++.+.+|+++ ++|||||||| +||+|||+++++++..--|+.+  .|.+        
T Consensus       401 ~~k~~~~~~~~~-i~-~~P~~~~~~~~~~l~~-l~DW~iSRqr-~wGtpiPwd~~~~iesl~dstiy~~~yt~~~~~~~~  476 (888)
T PRK12300        401 EWKELAHKCLDR-MR-IIPEEARAEFENKIDW-LKDRACARRR-GLGTPLPWDERWVIESLSDSTIYMAYYTIAKKIRQY  476 (888)
T ss_pred             HHHHHHHHHHCC-CE-EECCHHHHHHHHHHHC-CCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             778999987616-65-6572134557877614-6886545666-769788704882342277764001024687876334


Q ss_pred             ---------------------------CCCCCC----CCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHH----HHHH
Q ss_conf             ---------------------------123467----65431000241100004564321000102477654----3310
Q gi|255764461|r  241 ---------------------------TTGYLD----NPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLS----ANLP  285 (511)
Q Consensus       241 ---------------------------~~~~~~----~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~----~~~~  285 (511)
                                                 ..+...    +....+..|+|.|+++.|+|++..|-.++  ++..    ....
T Consensus       477 ~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~wyP~D~~~~G~D~i~~hl~f~--~~~~~aif~~~~  554 (888)
T PRK12300        477 GLDPEQLTPEFFDYVFLGKGDPEEISKKTGIPKEILEEMREEFEYWYPLDWRHSGKDLIPNHLTFF--IFNHVAIFPEEK  554 (888)
T ss_pred             CCCHHHCCCHHCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCEECCCCCCCCCEEHHHHHHHHH--HHHHHHHHCCCC
T ss_conf             899567581013043148997666666519988899986886464267601435310335679999--988688717777


Q ss_pred             CCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf             12323334303305860100000221110000002211121110000247873011122211100133211022102134
Q gi|255764461|r  286 LPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRS  365 (511)
Q Consensus       286 ~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~  365 (511)
                      +|+++++|||++.+|+|||||+||+|+|.+++++||||++|+|+++.+++++|.+|+.+.+....+  +.++++|++...
T Consensus       555 ~pk~v~~~G~Vl~eG~KMSKSkGNvV~P~eiI~~YGADalRl~l~~~a~~~~d~~~~~~~v~~~~~--~l~~~~~~~~~~  632 (888)
T PRK12300        555 WPRGIVVNGFVLLEGKKMSKSKGNVLPLREAIEEYGADVVRLYLASTAELSQDADFREKEAESIRR--QLERFYELAVEL  632 (888)
T ss_pred             CCCEEEEEEEEECCCEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHH
T ss_conf             887579832894598770303489899899997619629999999718855686457999999999--999999999976


Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCHHHCCCHHHH
Q ss_conf             55653123321034555895565667899999999998775035899999999-99999978865418701216999999
Q gi|255764461|r  366 VSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVI-SLVSEVDRYFDAQKPWELKKTNPDRA  444 (511)
Q Consensus       366 ~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~-~l~~~~N~yi~~~~PW~l~k~d~~~~  444 (511)
                      .        +. .....++..|+|+++++++++++++++||+|+|++|++.++ .+.+.+|+|++..+.         ..
T Consensus       633 ~--------~~-~~~~~~~~~D~wils~l~~~i~~v~~~~e~~~f~~a~~~~~~~~~~~~~~Y~~~~~~---------~~  694 (888)
T PRK12300        633 A--------EE-ESEEELRFIDKWLLSRLYSYIKEVTEAMEEFQTRKAIQEIFYNLLNDLRWYLRRGGE---------PN  694 (888)
T ss_pred             H--------CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC---------HH
T ss_conf             3--------26-777677667899999999999999999984459999999999999999999987371---------88


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHC
Q ss_conf             9999999999999999854322489999999849880007955510
Q gi|255764461|r  445 STVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLD  490 (511)
Q Consensus       445 ~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~~~~~~~~  490 (511)
                      ..+|+   +++..+++||+||+||+||+||+.||-++ +.+...++
T Consensus       695 ~~~l~---~~l~~~~~LLaP~~PhiaEElW~~Lg~~~-sV~~a~wP  736 (888)
T PRK12300        695 NKVLR---EVIEIWIRLLAPFTPHLAEEIWEKLGGEG-FVSLAPWP  736 (888)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEECCCC
T ss_conf             99999---99999999960410488999999679998-37707999


No 25 
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=587.60  Aligned_cols=316  Identities=24%  Similarity=0.334  Sum_probs=253.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC------------------
Q ss_conf             17997888999988322247897899999999885898036236437022799999998399------------------
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV------------------   67 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~------------------   67 (511)
                      ||+||||+|||||+||||||++++++||++||+||+|++|+|+||+|+||+||+++|+++|+                  
T Consensus         1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~   80 (376)
T cd00812           1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE   80 (376)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf             97998589888974546886989999999999995599704688456567899999999687477653011110001887


Q ss_pred             -----CHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHH
Q ss_conf             -----9899999999999999998088988--674778888999999998887543102211000101133430155667
Q gi|255764461|r   68 -----TTKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDE  140 (511)
Q Consensus        68 -----~p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~  140 (511)
                           +|+++++++.+.++++++++||++|  .+.+|++++|.+.||++|.+|+++|+||+++.+++||+.|++++.+-.
T Consensus        81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~f~~~~  160 (376)
T cd00812          81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQWFLKYS  160 (376)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEECCC
T ss_conf             86127999999999999999999809873768664337778999999999999988988951755536467760574166


Q ss_pred             HCCCCCCCCCCCCCCCEE-----CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf             211122222222332000-----034-5443446664444434443333210006765457754103456753234333-
Q gi|255764461|r  141 VYKGADGQYYNAQHNPVQ-----WME-EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKT-  213 (511)
Q Consensus       141 v~~~~~~~~~~~~~~p~~-----~~~-~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~-  213 (511)
                      ..   .++.|..|..+++     .+. .++|+.++.       ++..+...      ...    .....|+||+|||++ 
T Consensus       161 ~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~------~~~----~~~~~l~dw~isr~~~  220 (376)
T cd00812         161 TE---WAERLLKDLEGLDTWPEEVKNMQENWIGWLK-------GWACARRY------GLG----TVLPWDRDWLIERLRD  220 (376)
T ss_pred             HH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-------CCEEEEEC------CCC----CCCCCCCCCCCCCCCC
T ss_conf             78---8999874042046786889999999873024-------65254111------115----4065554434134445


Q ss_pred             --CCCCCCCCC------------------CCCCCCCCCHHHHHHHHCCCCCCCC----CCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             --777657864------------------2221464602444322001234676----5431000241100004564321
Q gi|255764461|r  214 --FDWGIKIPD------------------DPQYIMYVWIDALTNYLTTTGYLDN----PDGSKAKFWPADLHVIGKDILR  269 (511)
Q Consensus       214 --~~WGipiP~------------------~~~~~~YVWfDa~~gY~s~~~~~~~----~~~~~~~~w~~d~~~~G~Dii~  269 (511)
                        ++||+|||.                  .+++++++|||++++|++.......    ....+..|||.|+|++||||++
T Consensus       221 ~~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~  300 (376)
T cd00812         221 STIYWGYYTPAHHCEKCGPVCPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAV  300 (376)
T ss_pred             CCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCC
T ss_conf             66667700215975678641466675556654468865776301466678433447668799984288606881335420


Q ss_pred             HH---CCHHHHHHHHHHH-HCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             00---0102477654331-012323334303305860100000221110000002211121110000247873011
Q gi|255764461|r  270 FH---AIYWPAFLLSANL-PLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       270 Fh---~i~~pa~l~~~~~-~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
                      ||   +++||++|++++. .+|++|++||||+++|+||||||||+|+|.|+|++||+|++||||++.+|+++|++|
T Consensus       301 fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~~~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F  376 (376)
T cd00812         301 NHLLYSRFNHKALFDEGTKEPPKGLRVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW  376 (376)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             1367999999999864677798266875729669966377899884989999885954999999944995568998


No 26 
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=573.78  Aligned_cols=455  Identities=24%  Similarity=0.389  Sum_probs=335.7

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             81799788899998832224789789999999988589803623643702279999999839998999999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA   84 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   84 (511)
                      +|||||.+.|||||.||+||.++|+.+||++||+||+||+|+|+.|+|.+|+|++..|.+.|.+|+.+++++.+.+++++
T Consensus        34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql  113 (814)
T COG0495          34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL  113 (814)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             75599867878888734685412108999999998569721456755666863999999857896999999999999999


Q ss_pred             HHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf             980889886747---78888999999998887543102211000101133430155667211122222222332000034
Q gi|255764461|r   85 DVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWME  161 (511)
Q Consensus        85 ~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~  161 (511)
                      +.+|.|+| |.|   |+||+|++++|++|.+|+++|++|++++++.|||.|++-+++.+|..|+    |..||.||+.++
T Consensus       114 k~lG~siD-W~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~----~~r~~~~V~~ke  188 (814)
T COG0495         114 KSLGFSID-WRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGG----CWRCGEPVEIKE  188 (814)
T ss_pred             HHHCCCCC-CCCCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCCCCCEEECCC----CCCCCCCEEEEE
T ss_conf             98087612-3554564796477999999999997798885255431077769761541241587----655788526866


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----------------------------------------
Q ss_conf             5443446664444434443333210006765457754103----------------------------------------
Q gi|255764461|r  162 EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK----------------------------------------  201 (511)
Q Consensus       162 ~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~----------------------------------------  201 (511)
                      -.+|||++++|++.|++-+..-. ..+|+.++....+|+.                                        
T Consensus       189 l~qw~~kit~yae~ll~~l~~l~-~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~  267 (814)
T COG0495         189 LTQWFFKITDYADELLDDLDKLA-TLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAP  267 (814)
T ss_pred             EEEEEEEECHHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEEC
T ss_conf             68999991342999986666542-47956699898727078887589985177644100244663573116748999707


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  202 --------------------------------------------------------------------------------  201 (511)
Q Consensus       202 --------------------------------------------------------------------------------  201 (511)
                                                                                                      
T Consensus       268 ~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpah  347 (814)
T COG0495         268 EHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAH  347 (814)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCC
T ss_conf             86678987418651669999988617871563045687763113650247777886778996743145556635458888


Q ss_pred             ---------------------------------------------------------------------CCCCCCCCCCC
Q ss_conf             ---------------------------------------------------------------------45675323433
Q gi|255764461|r  202 ---------------------------------------------------------------------SGLKDLSLSRK  212 (511)
Q Consensus       202 ---------------------------------------------------------------------~gl~Dw~ISR~  212 (511)
                                                                                           =.|+||.+|||
T Consensus       348 d~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srq  427 (814)
T COG0495         348 DERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQ  427 (814)
T ss_pred             CCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf             70206899852886179982488766400114745762543367640567999998688723782588514515778999


Q ss_pred             CCCCCCCCCCC-----------------------------------C--------CCC-------CCCCHHHHHHHHCCC
Q ss_conf             37776578642-----------------------------------2--------214-------646024443220012
Q gi|255764461|r  213 TFDWGIKIPDD-----------------------------------P--------QYI-------MYVWIDALTNYLTTT  242 (511)
Q Consensus       213 ~~~WGipiP~~-----------------------------------~--------~~~-------~YVWfDa~~gY~s~~  242 (511)
                      | |||.|||--                                   +        +.+       +..|+++..=|.-..
T Consensus       428 R-ywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~  506 (814)
T COG0495         428 R-YWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFF  506 (814)
T ss_pred             H-HHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHCCCCCCCHHHC
T ss_conf             9-708996454742378554736766743664114679889998883617996699853532324657604321018665


Q ss_pred             CC-----CCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHHHHHHHHH----HCCCCCCCCCCEEE-CCCCCCHHHCC
Q ss_conf             34-----67654310002411000045643210001---02477654331----01232333430330-58601000002
Q gi|255764461|r  243 GY-----LDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPAFLLSANL----PLPKKVFSHGFILH-KGEKISKSLGN  309 (511)
Q Consensus       243 ~~-----~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa~l~~~~~----~~p~~i~~~g~l~~-~G~KMSKS~GN  309 (511)
                      ..     .......+.+|.|.|++..|+|-+.-|-+   ||-..|...|+    .+.+.++++|||+. +|+|||||+||
T Consensus       507 d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN  586 (814)
T COG0495         507 DPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN  586 (814)
T ss_pred             CHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf             81007543225788742067201226366777889999999988347577877650444411426874277704544578


Q ss_pred             CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHH-H
Q ss_conf             211100000022111211100002478730111222111001332110221021345565312332103455589556-5
Q gi|255764461|r  310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESD-E  388 (511)
Q Consensus       310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D-~  388 (511)
                      +|+|++++++||||++|+|+++.+|..+|.+|+++++....+  +++.++|++.       ....+.   ....+..+ .
T Consensus       587 ~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r--fL~r~~~l~~-------~~~~~~---~~~~~~~~~~  654 (814)
T COG0495         587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARR--FLQRVWNLVK-------EHLEKL---VEELTKEQGK  654 (814)
T ss_pred             CCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHH--HHHHHHHHHH-------HHHHCC---CCCCCCHHHH
T ss_conf             889899999958409899998608775378877456489999--9999999999-------864023---3335530568


Q ss_pred             HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             6678999999999987750-358999999999999997886541870121699999999999999999999998543224
Q gi|255764461|r  389 SILSVCSRVLQEIRENMQN-QLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVP  467 (511)
Q Consensus       389 ~ll~~l~~~~~~v~~a~e~-~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P  467 (511)
                      .....++++++.+++.++. +.++.|+..+|++.+...+|....+      .+.    .   ++.+++..+..||+||+|
T Consensus       655 ~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~------~~~----~---~l~~~l~~~v~lLaP~aP  721 (814)
T COG0495         655 EDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTE------GDR----K---VLREALETWVRLLAPFAP  721 (814)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHH----H---HHHHHHHHHHHHHCCCCC
T ss_conf             899999999999999999998899999999999999999875023------207----8---999999999999666664


Q ss_pred             HHHHHHHHHCCCCC--CCCCHHHHCC
Q ss_conf             89999999849880--0079555101
Q gi|255764461|r  468 KLANKIFDILFVAD--ENRCFQSLDQ  491 (511)
Q Consensus       468 ~~ae~i~~~Lg~~~--~~~~~~~~~~  491 (511)
                      |+||++|+.||.++  ....|+..++
T Consensus       722 H~aEElW~~lg~~~~v~~~~wP~~de  747 (814)
T COG0495         722 HIAEELWEELGNEGFVSNAPWPEPDE  747 (814)
T ss_pred             HHHHHHHHHHCCCCCEEECCCCCCCH
T ss_conf             77999999966998164178998773


No 27 
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.  Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00  E-value=0  Score=579.80  Aligned_cols=300  Identities=41%  Similarity=0.759  Sum_probs=276.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC----------CHHHHHHH
Q ss_conf             17997888999988322247897899999999885898036236437022799999998399----------98999999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV----------TTKVFVDQ   75 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~----------~p~e~~~~   75 (511)
                      ||+||+|+|||||+||||||++++.+|+++||+||+|++|+|++|+|+||+||+.+|++++.          +|++++++
T Consensus         1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~   80 (334)
T cd00668           1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGKKEEFLEDPKEWVDK   80 (334)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             98995599888886146675989999999999981699536068668656899999999687121057777539999999


Q ss_pred             HHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf             99999999998088988--6747788889999999988875431022110001011334301556672111222222223
Q gi|255764461|r   76 NSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQ  153 (511)
Q Consensus        76 ~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~  153 (511)
                      |++.++++++++||++|  .+.+|++|+|.+.++++|++|.++|+||++..++                           
T Consensus        81 ~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v---------------------------  133 (334)
T cd00668          81 YIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPV---------------------------  133 (334)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCC---------------------------
T ss_conf             99999999999689768787611599999999999999999879989505667---------------------------


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf             320000345443446664444434443333210006765457754103456753234333777657864-----------
Q gi|255764461|r  154 HNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPD-----------  222 (511)
Q Consensus       154 ~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~-----------  222 (511)
                            +.++||||+++++++.|.+++++..  +.|+.+++.+.+|++++++||||||++ +||+|+|.           
T Consensus       134 ------~~~~~~f~~~~~~~~~l~~~~~~~~--~~p~~~~~~~~~~l~~~~~d~~isR~~-~wG~~~P~~~~~~~~~~~~  204 (334)
T cd00668         134 ------RLTEQWFLKLSKLKDRLLEALEKNE--IWPENVRNRFLNWLENGLRDWCISRQR-YWGIPIPAWYCEDCGEVCP  204 (334)
T ss_pred             ------CCCCEEEEEHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCEEECCCCCCCCC
T ss_conf             ------7565477788999999999998489--877899999998874678775257334-6787556133256775566


Q ss_pred             -------CCCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCC
Q ss_conf             -------2221464602444322001234676543--10002411000045643210001024776543-3101232333
Q gi|255764461|r  223 -------DPQYIMYVWIDALTNYLTTTGYLDNPDG--SKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFS  292 (511)
Q Consensus       223 -------~~~~~~YVWfDa~~gY~s~~~~~~~~~~--~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~  292 (511)
                             .+++|+||||||+++|++..+++.+..+  .+..++|.|+|++|+||+++|..++||++.++ +.++|+++++
T Consensus       205 ~~~~~~~~~~~~~~~Wfds~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~  284 (334)
T cd00668         205 KCGKELKRETDVLDVWFDSGIGYLSALGYPNEEEGFEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALFGKPPPKNVLV  284 (334)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHEEE
T ss_conf             65311368765344664175654322678643325668761798169871561363299999999998449850877574


Q ss_pred             CCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             430330-5860100000221110000002211121110000247873011
Q gi|255764461|r  293 HGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       293 ~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
                      |||+++ +|+|||||+||+|++.|++++||+|++||||++.+|+++|++|
T Consensus       285 ~g~~~~~~G~KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~~d~~f  334 (334)
T cd00668         285 HGLVLDEGGRKMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEGEDLNF  334 (334)
T ss_pred             CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             20198389957388699888989999875948999999942998889998


No 28 
>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included.
Probab=100.00  E-value=0  Score=555.57  Aligned_cols=333  Identities=25%  Similarity=0.390  Sum_probs=280.4

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-----CCCH--------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-----9998--------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-----GVTT--------   69 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-----g~~p--------   69 (511)
                      +++||+|+.|+|||||.|||||+++|+.+|+++||+||+|++|+|+.|+|+||+||+.+|++.     +.++        
T Consensus        21 ~k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~vek~~~~~~~~~~~~~~~~~~  100 (606)
T pfam00133        21 GKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKF  100 (606)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHH
T ss_conf             99958997089897885024266878999999999982899779988456143999999999742115998365799999


Q ss_pred             ----HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC
Q ss_conf             ----999999999999999980889886--74778888999999998887543102211000101133430155667211
Q gi|255764461|r   70 ----KVFVDQNSRNFRDMADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK  143 (511)
Q Consensus        70 ----~e~~~~~~~~~~~~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~  143 (511)
                          +++++++.+.++++++++|+++|+  ...|++|++.+++|++|.+|+++|+||++..+++|||.|++.|++.+|..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y~~~~~w~F~~L~~~Gliyr~~~~V~wcp~~~T~La~~Ev~~  180 (606)
T pfam00133       101 REKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEY  180 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCCEEE
T ss_conf             99999999999999999999829126458872527812549999999999977981775155012442541224440210


Q ss_pred             CC------------------------------------------------------------------------------
Q ss_conf             12------------------------------------------------------------------------------
Q gi|255764461|r  144 GA------------------------------------------------------------------------------  145 (511)
Q Consensus       144 ~~------------------------------------------------------------------------------  145 (511)
                      +.                                                                              
T Consensus       181 ~d~~~~~~~v~f~l~~~~~~~l~i~TTrPeTl~g~~~l~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (606)
T pfam00133       181 KDVKGPSIHVAFPLADGKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDF  260 (606)
T ss_pred             CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             00333035650445789876699994354200365368988887651044386067899999999974033024333133


Q ss_pred             ---------------------------------------------------------------CC---------------
Q ss_conf             ---------------------------------------------------------------22---------------
Q gi|255764461|r  146 ---------------------------------------------------------------DG---------------  147 (511)
Q Consensus       146 ---------------------------------------------------------------~~---------------  147 (511)
                                                                                     +|               
T Consensus       261 ~g~~l~G~~~~~P~~~~~ipv~~~~~V~~~~GTG~V~~vPah~~~D~~~~~k~~l~~~~~i~~~g~~~~~~~~~~G~~v~  340 (606)
T pfam00133       261 RGKELIGKKYIHPFVNREIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPEFQGLKRF  340 (606)
T ss_pred             CCCEECCCEEECCCCCCEEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCEEE
T ss_conf             45231277897887897578995464156668771333677777999999983998502448988466765111585256


Q ss_pred             --------------------------CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             --------------------------222223320000345443446664444434443333210006765457754103
Q gi|255764461|r  148 --------------------------QYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK  201 (511)
Q Consensus       148 --------------------------~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~  201 (511)
                                                .+|..|+.|++.+.+.|||++++++++.+.+.++. .. +.|+..++.+.+|++
T Consensus       341 ~a~~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~vi~~~~~QWFi~~~~~k~~~~~~~~~-~~-~~P~~~~~~~~~~l~  418 (606)
T pfam00133       341 KARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEK-VQ-FVPKWGEKRYGNWLE  418 (606)
T ss_pred             ECCHHHHHHHHHCCCEEEEEEECCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH-HH-CCCHHHCCHHHEEEC
T ss_conf             0218999978868986653220101555547894799960278777559999999986443-30-275010120330552


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC------------------------------------------------CCCCCCCCHH
Q ss_conf             4567532343337776578642------------------------------------------------2214646024
Q gi|255764461|r  202 SGLKDLSLSRKTFDWGIKIPDD------------------------------------------------PQYIMYVWID  233 (511)
Q Consensus       202 ~gl~Dw~ISR~~~~WGipiP~~------------------------------------------------~~~~~YVWfD  233 (511)
                      + |+|||||||| +||+|||..                                                +..|+++|||
T Consensus       419 ~-l~DW~iSRQR-~WGtPIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~re~DtmDtwfd  496 (606)
T pfam00133       419 N-IQDWCISRQR-WWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFS  496 (606)
T ss_pred             C-CCCCEEEEEC-CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEECCEEEECEEC
T ss_conf             5-6563575414-6787322698378983167502455554430466753101212465535788751567761202111


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHH---HHHHCCCCCCCCCCEE-ECCCCCCHHHCC
Q ss_conf             443220012346765431000241100004564321000102477654---3310123233343033-058601000002
Q gi|255764461|r  234 ALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLS---ANLPLPKKVFSHGFIL-HKGEKISKSLGN  309 (511)
Q Consensus       234 a~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~---~~~~~p~~i~~~g~l~-~~G~KMSKS~GN  309 (511)
                      +...|.+..++..+....+.+|+|.|+++.|+|+++||....  ++.+   .+..+.+++++||||+ .+|+|||||+||
T Consensus       497 Sg~~~~~~~~~p~~~~~~f~~~~PvD~~i~G~D~~r~w~~~~--~~~~~~~~~~~Pfk~l~~~G~vld~~G~KMSKSkGN  574 (606)
T pfam00133       497 SGSWPFSTLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRM--IVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGN  574 (606)
T ss_pred             CCCCHHHHHCCCHHCHHHHHCCCCCCEEECCHHHHHHHHHHH--HHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCC
T ss_conf             775689884785127698953889848977676884899999--970000279976545887661899988788888899


Q ss_pred             CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEEC
Q ss_conf             211100000022111211100002478730111
Q gi|255764461|r  310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYD  342 (511)
Q Consensus       310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs  342 (511)
                      +|+|.+++++||||++|+|+++ +++++|++||
T Consensus       575 vv~p~~~i~~yGaD~~Rl~~~~-a~~~~D~~~S  606 (606)
T pfam00133       575 VIDPLDVIDKYGADALRLWLAS-SDYGRDINFS  606 (606)
T ss_pred             CCCHHHHHHHHCHHHHHHHHHC-CCCHHCCCCC
T ss_conf             7898999987492999999975-9922046559


No 29 
>KOG0432 consensus
Probab=100.00  E-value=0  Score=500.10  Aligned_cols=458  Identities=27%  Similarity=0.398  Sum_probs=360.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----C-CCC-----HHHH-
Q ss_conf             8817997888999988322247897899999999885898036236437022799999998----3-999-----8999-
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN----A-GVT-----TKVF-   72 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~----~-g~~-----p~e~-   72 (511)
                      ...|.|+.|||.+.|.||||||.+....|.++||.||.|+.|+|++|+|--|..++...+|    + |++     .+++ 
T Consensus        74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~  153 (995)
T KOG0432          74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL  153 (995)
T ss_pred             CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
T ss_conf             88532515999765631065788878899999999825975332488663352479999999987158632114899999


Q ss_pred             ------HHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCC
Q ss_conf             ------999999999999980889886747---78888999999998887543102211000101133430155667211
Q gi|255764461|r   73 ------VDQNSRNFRDMADVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYK  143 (511)
Q Consensus        73 ------~~~~~~~~~~~~~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~  143 (511)
                            -+++...+.++++++|.++| |.|   |.|+.-.+.|-+.|.+|+++|.||++..-+.||+.-...++|-+|..
T Consensus       154 ~~vw~Wk~e~g~~I~~Qlk~lGas~D-W~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~  232 (995)
T KOG0432         154 KEVWEWKEEYGGRIYNQLKRLGASLD-WDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES  232 (995)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHEECC
T ss_conf             99999998858519999998357320-14756034778889999999998764846733752641366775654540012


Q ss_pred             C-------------------------------C-----------------------------------------------
Q ss_conf             1-------------------------------2-----------------------------------------------
Q gi|255764461|r  144 G-------------------------------A-----------------------------------------------  145 (511)
Q Consensus       144 ~-------------------------------~-----------------------------------------------  145 (511)
                      .                               .                                               
T Consensus       233 ~ei~~~t~l~vpGyd~~VeFG~L~~~aY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lP  312 (995)
T KOG0432         233 VEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLP  312 (995)
T ss_pred             EECCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             12588735734787762353234577876058987389734886411133157757877643000675443477799665


Q ss_pred             -------------------------------------------CCC----------------------------------
Q ss_conf             -------------------------------------------222----------------------------------
Q gi|255764461|r  146 -------------------------------------------DGQ----------------------------------  148 (511)
Q Consensus       146 -------------------------------------------~~~----------------------------------  148 (511)
                                                                 +|.                                  
T Consensus       313 iI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~  392 (995)
T KOG0432         313 IICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE  392 (995)
T ss_pred             EEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             66311025445666247367888067888875399812678587853225410047478889999999999841553167


Q ss_pred             -------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -------2222332000034544344666444443444333321000676545775410345675323433377765786
Q gi|255764461|r  149 -------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIP  221 (511)
Q Consensus       149 -------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP  221 (511)
                             .|..+|.-+|.+-..|||++..+++.+..+.+++..--+.|+....+...|+++ .+||||||| +|||+.||
T Consensus       393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~-i~DWCiSRQ-LWWGHrIP  470 (995)
T KOG0432         393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLEN-IRDWCISRQ-LWWGHRIP  470 (995)
T ss_pred             CCCEECCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHH-CCCCCHHHH-HHHCCCCC
T ss_conf             8852523347777733601254001337999999999874497587755778789999751-302121344-43045464


Q ss_pred             CC----------C-------------------------------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             42----------2-------------------------------214646024443220012346765431000241100
Q gi|255764461|r  222 DD----------P-------------------------------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADL  260 (511)
Q Consensus       222 ~~----------~-------------------------------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~  260 (511)
                      .+          +                               ..|++.||-+.+-++|+.||+. ...++..|+|.++
T Consensus       471 Ay~v~~~~~~~ee~~Wvv~rseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~-~t~d~~~fyP~sl  549 (995)
T KOG0432         471 AYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPE-ETKDFKNFYPLSL  549 (995)
T ss_pred             EEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCHHCCCCC-CCCCHHHCCCCHH
T ss_conf             256202467776661688588999999999971885321251484277766641533211048965-5641876298415


Q ss_pred             HCCCCCCCCHHCCHHHHHH--HH---HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHH----------------
Q ss_conf             0045643210001024776--54---33101232333430330-58601000002211100000----------------
Q gi|255764461|r  261 HVIGKDILRFHAIYWPAFL--LS---ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIE----------------  318 (511)
Q Consensus       261 ~~~G~Dii~Fh~i~~pa~l--~~---~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~----------------  318 (511)
                      .=.|.||++|    |.|-+  ++   +|.-+++.|+.||+|-. .|+|||||+||||+|.|+|+                
T Consensus       550 lETG~DILfF----WVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNL  625 (995)
T KOG0432         550 LETGHDILFF----WVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNL  625 (995)
T ss_pred             HHCCCHHHHH----HHHHHHHHHHHHCCCCCCHHEEECHHHCCCCCCCCCHHHCCCCCHHHHHCCCCHHHHHHHHHCCCC
T ss_conf             4327527899----999999965555177773411442121135245221100452488887523129999999872799


Q ss_pred             ---------------------HCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CC
Q ss_conf             ---------------------02211121110000247873011122211100133211022102134556531233-21
Q gi|255764461|r  319 ---------------------EVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYD-GM  376 (511)
Q Consensus       319 ---------------------~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~-g~  376 (511)
                                           ++|.|++||.|++...-+.|++++..++..  +..+.||+||    +++|+....+ +.
T Consensus       626 dp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g--~r~FcNKlWN----a~rF~l~~lg~~~  699 (995)
T KOG0432         626 DPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEG--YRHFCNKLWN----ATRFALQRLGENF  699 (995)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHHHHHHH----HHHHHHHHCCCCC
T ss_conf             989999998777753678874335389999998712567644441898766--8999999999----9999987435578


Q ss_pred             CCCC----CCCCH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCCCH---HHHHH
Q ss_conf             0345----55895-565667899999999998775035899999999999--99978865418701216999---99999
Q gi|255764461|r  377 IPTP----GAFTE-SDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKTNP---DRAST  446 (511)
Q Consensus       377 ip~~----~~~~~-~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~d~---~~~~~  446 (511)
                      +|.+    +.... .|.|++++++.+++.+.++|+.++|..|...+.+|.  +.|+.|++..+| .+..++.   ..+..
T Consensus       700 ~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp-~l~~~~~~~~~~a~~  778 (995)
T KOG0432         700 VPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKP-LLWGDSEALAYEARR  778 (995)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHH
T ss_conf             8882235687741068999999999999998511200167789999999999998999998558-762893454466788


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             999999999999998543224899999998498
Q gi|255764461|r  447 VLYVTVEVIRQLAILLQAFVPKLANKIFDILFV  479 (511)
Q Consensus       447 vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~  479 (511)
                      +|+.++.   ....||+|||||+||++|+.|-.
T Consensus       779 vL~~~ld---~gLrll~PfMPFvtEelwqrlP~  808 (995)
T KOG0432         779 VLYRCLD---NGLRLLHPFMPFITEELWQRLPR  808 (995)
T ss_pred             HHHHHHH---HHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             9999999---88998457440308999985667


No 30 
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=509.43  Aligned_cols=459  Identities=23%  Similarity=0.362  Sum_probs=345.9

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-------------------
Q ss_conf             8179978889999883222478978999999998858980362364370227999999983-------------------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-------------------   65 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-------------------   65 (511)
                      +||++|.|.||+||.||+||.|||...|+++||+||+|++|+|+.|+=+=|+||..-|++.                   
T Consensus        41 PKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~GknvLFPlGfHvTG~Pilg~A~~i~~~de~t~~~Y~~~h~eee  120 (1109)
T TIGR00395        41 PKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEKTIKVYTEVHAEEE  120 (1109)
T ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHHH
T ss_conf             50320157655674421233443331315887661068400224654435862788999973006046788520575134


Q ss_pred             ------------------------------------------CCC---------HHHHHHHHHHHHHHHHHHHCCCCCC-
Q ss_conf             ------------------------------------------999---------8999999999999999980889886-
Q gi|255764461|r   66 ------------------------------------------GVT---------TKVFVDQNSRNFRDMADVLDISYDD-   93 (511)
Q Consensus        66 ------------------------------------------g~~---------p~e~~~~~~~~~~~~~~~~~i~~D~-   93 (511)
                                                                |++         |+.+++.+.....+.++.+|.|.|+ 
T Consensus       121 eikeetPaekDheDvtkfkakkskaaakkGrGkYqfeimlqlGiP~eel~~l~dpe~iveYFs~~~~~~~~~~G~siDWR  200 (1109)
T TIGR00395       121 EIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIMLQLGIPREELLKLTDPEYIVEYFSREAESALKSMGYSIDWR  200 (1109)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECC
T ss_conf             43015776444145666654443566641787312456331379879997204843021038877999998648805225


Q ss_pred             --CCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCC------------------------
Q ss_conf             --747788--8899999999888754310221100010113343015566721112------------------------
Q gi|255764461|r   94 --FIRTTE--KRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGA------------------------  145 (511)
Q Consensus        94 --~~rT~~--~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~------------------------  145 (511)
                        |. |+|  +.|.+++++-+.||.+.|+|-+|++++-|||+|+.-..|..+..|.                        
T Consensus       201 R~F~-TtDan~~Y~~FI~WQ~~KLk~~Gli~kG~hpv~Ycp~d~npv~DHD~l~GE~vt~~ey~~~Kf~~~d~~DDaaki  279 (1109)
T TIGR00395       201 REFK-TTDANPVYDRFIEWQIRKLKELGLIVKGEHPVRYCPKDENPVEDHDLLSGEGVTIVEYILIKFKLEDGADDAAKI  279 (1109)
T ss_pred             CCCE-ECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHH
T ss_conf             5521-258746667899999999986595441786602377776854455533356433010367666642775302454


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       280 iDsssDlDkskk~~~v~ATLRPET~yG~Tn~wv~P~~~Yv~~~~~~e~etenGielienGiwi~~~~A~~~L~yq~~~Pk  359 (1109)
T TIGR00395       280 IDSSSDLDKSKKLYFVAATLRPETVYGVTNVWVNPDITYVIAEVGGEKETENGIELIENGIWIVSKEAVENLSYQKLKPK  359 (1109)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             31111010145166403568874100755355557751689973374001200445542257778999960434345887


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       360 rGf~~~~~~v~g~~liG~~v~~Pq~v~~e~pILPa~fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~  439 (1109)
T TIGR00395       360 RGFLKVIEEVDGKQLIGKKVKNPQVVGKEVPILPAEFVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDV  439 (1109)
T ss_pred             CCEEEEEEEECHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHH
T ss_conf             42278865307342417644577325897754770112678885478841788703589998607780145532773246


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  146 --------------------------------------------------------------------------------  145 (511)
Q Consensus       146 --------------------------------------------------------------------------------  145 (511)
                                                                                                      
T Consensus       440 v~di~~v~~i~~~~yG~~pA~~ive~~gi~sq~dk~~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~  519 (1109)
T TIGR00395       440 VEDIEPVPLIKVDGYGDLPAKEIVEELGIKSQKDKNLLEEATKELYKEEYHTGVMIENILDYKGMKVSEAKEKVKEDLID  519 (1109)
T ss_pred             HHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             64148556763088777548999988288887720247887400221321500320477578861179999999999985


Q ss_pred             -----------CCCCCCCCCCCEECC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             -----------222222233200003-4544344666--44444344433332100067654577541034567532343
Q gi|255764461|r  146 -----------DGQYYNAQHNPVQWM-EEEGYFFRLS--AYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSR  211 (511)
Q Consensus       146 -----------~~~~~~~~~~p~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR  211 (511)
                                 .-.+.+.||.++..+ -+.|||++.|  +++++..+.++.  +.+.|+++|+...+.++- |+||+++|
T Consensus       520 ~GlA~v~yEFsE~~VicRcG~~CiV~v~~DQWF~~Ys~~~WK~~a~~CLeg--M~~ip~~~k~~F~~~idW-L~dwAc~R  596 (1109)
T TIGR00395       520 KGLADVMYEFSEKPVICRCGTKCIVKVVEDQWFVKYSDESWKELAHECLEG--MRIIPEEVKEAFEEKIDW-LKDWACAR  596 (1109)
T ss_pred             CCCCEEECCCCCCCEEECCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHH-HCCCEEEE
T ss_conf             378602016578851202679606988516001114515689999987433--732768888888776664-23630461


Q ss_pred             CCCCCCCCCCCCCCC--------CCCCCH--------H----HHHHHHCCC-----------------------------
Q ss_conf             337776578642221--------464602--------4----443220012-----------------------------
Q gi|255764461|r  212 KTFDWGIKIPDDPQY--------IMYVWI--------D----ALTNYLTTT-----------------------------  242 (511)
Q Consensus       212 ~~~~WGipiP~~~~~--------~~YVWf--------D----a~~gY~s~~-----------------------------  242 (511)
                      .+ .-|+.+|+|+++        |||-=|        .    +=||++..+                             
T Consensus       597 r~-GLGTrlPwde~wliESLsDSTIY~aYYtiA~~l~~~~~g~EiGPlGisaD~mt~E~fDyifl~~gdV~K~Ak~t~ip  675 (1109)
T TIGR00395       597 RK-GLGTRLPWDEKWLIESLSDSTIYMAYYTIAKYLNKDDLGNEIGPLGISADQMTDEFFDYIFLGKGDVDKVAKNTNIP  675 (1109)
T ss_pred             CC-CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             24-67777875675477127623256789999999852145776455544420057445224323887156776540788


Q ss_pred             -CCCCCCCCCCCCCCCCCHHCCCCCCCC--------HHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCC
Q ss_conf             -346765431000241100004564321--------00010247765433101232333430330586010000022111
Q gi|255764461|r  243 -GYLDNPDGSKAKFWPADLHVIGKDILR--------FHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDP  313 (511)
Q Consensus       243 -~~~~~~~~~~~~~w~~d~~~~G~Dii~--------Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~  313 (511)
                       .-...-..+|.+|+|-|+..-|||.|.        .|.-+||      ...||+.|.+|||+++||.|||||+||++++
T Consensus       676 ~~~~~~lR~eF~Y~YPlD~r~SgKDLi~NHLtFyiF~HvAiFP------~~~WPrGi~vnG~~~Leg~KmSkSkGn~l~l  749 (1109)
T TIGR00395       676 LELIEKLREEFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFP------EKFWPRGIVVNGYVLLEGKKMSKSKGNVLTL  749 (1109)
T ss_pred             HHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHEEEECC------CCCCCCEEEEEEEEEEECCCCCCCCCCCHHH
T ss_conf             8899875543410056010024310103467766440024248------7989761799757887173405454762238


Q ss_pred             CCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCC---CCCHHHH
Q ss_conf             00000022111211100002478730111222111001332110221021345565312332--103455---5895565
Q gi|255764461|r  314 IEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDG--MIPTPG---AFTESDE  388 (511)
Q Consensus       314 ~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g--~ip~~~---~~~~~D~  388 (511)
                      .+++++||||+.|+|+++.+...+|.||...++.+..+.  +..|-||+.|+..    ..+|  .+.+.+   ..+..|+
T Consensus       750 ~~~vekfGADv~Rl~~~~aAe~~~Dad~~~~e~~~~~~~--L~~l~~~a~e~~~----~~~GrPvl~e~GPaE~~~f~D~  823 (1109)
T TIGR00395       750 KEAVEKFGADVARLYILDAAELVQDADWKESEVEGTKKR--LERLYEFAEEITK----KSDGRPVLLEVGPAEELSFIDR  823 (1109)
T ss_pred             HHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH----HHCCCEEEECCCCCCCHHHHHH
T ss_conf             899987276189999973178721356106778999999--9999999999854----3068401103577763105218


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             66789999999999877503589999-99999999997886541870121699999999999999999999998543224
Q gi|255764461|r  389 SILSVCSRVLQEIRENMQNQLIHRAL-AQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVP  467 (511)
Q Consensus       389 ~ll~~l~~~~~~v~~a~e~~~~~~Al-~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P  467 (511)
                      |+++++++++++++++|+++++++|+ ..+++|-+....|..+..-     .-+++..++|.   +.|-..+.||+||+|
T Consensus       824 wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~d~~~Y~~r~g~-----~~~Devksvla---~~l~~~i~LlaPf~P  895 (1109)
T TIGR00395       824 WLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKADVDWYRRRGGE-----NVKDEVKSVLA---RVLETWIKLLAPFAP  895 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHH---HHHHHHHHHHCCCCH
T ss_conf             9999999999999999986667899999999999999999986488-----40057999999---999999998323121


Q ss_pred             HHHHHHHHHC-CCCCCCCCHHHH
Q ss_conf             8999999984-988000795551
Q gi|255764461|r  468 KLANKIFDIL-FVADENRCFQSL  489 (511)
Q Consensus       468 ~~ae~i~~~L-g~~~~~~~~~~~  489 (511)
                      |+||+||+.+ |-.. ..+...+
T Consensus       896 h~aEe~w~~~lG~~~-fV~~a~f  917 (1109)
T TIGR00395       896 HLAEEMWEEVLGKEG-FVSLAKF  917 (1109)
T ss_pred             HHHHHHHHHHHCCCC-CCCCCCC
T ss_conf             689999999708873-1136779


No 31 
>KOG0435 consensus
Probab=100.00  E-value=0  Score=478.76  Aligned_cols=449  Identities=24%  Similarity=0.355  Sum_probs=326.1

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             88817997888999988322247897899999999885898036236437022799999998399989999999999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD   82 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~   82 (511)
                      +++| ||-+..|||+|.|||||.|.|+.+|+++||.||+||+|++++|||.+|+|.|++|.+.|++|+.++.++.+.+++
T Consensus        56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~  134 (876)
T KOG0435          56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQ  134 (876)
T ss_pred             CCCC-EEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             7873-699736788876112642799725889999985486421577630348835667875488920546989999999


Q ss_pred             HHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf             99980889886--7477888899999999888754310221100010113343015566721112222222233200003
Q gi|255764461|r   83 MADVLDISYDD--FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWM  160 (511)
Q Consensus        83 ~~~~~~i~~D~--~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~  160 (511)
                      ++.++||+||+  -+.|++|++++++|.||.+|+++|++|+.+.++.|||.+.+.|++.+|...   .+...+|.+||..
T Consensus       135 Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~---G~SWRSGA~VEkK  211 (876)
T KOG0435         135 QLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDAD---GCSWRSGAKVEKK  211 (876)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHCCC---CCCCCCCCHHHHH
T ss_conf             9997376012455323478315678999999999711221113536657201215322010355---7553456546577


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---------------------------------------
Q ss_conf             45443446664444434443333210006765457754103---------------------------------------
Q gi|255764461|r  161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK---------------------------------------  201 (511)
Q Consensus       161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~---------------------------------------  201 (511)
                      ..+|||++.++|+++|++-+++-++|  |+ +++.-.+|+.                                       
T Consensus       212 ~LrQWfikttaYAk~L~d~L~~L~~W--~~-vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl  288 (876)
T KOG0435         212 KLRQWFIKTTAYAKRLLDGLETLPEW--PE-VKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVL  288 (876)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEE
T ss_conf             88889863168899999998750301--66-8999874312454207987832687787458999458244226257997


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  202 --------------------------------------------------------------------------------  201 (511)
Q Consensus       202 --------------------------------------------------------------------------------  201 (511)
                                                                                                      
T Consensus       289 ~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~  368 (876)
T KOG0435         289 APSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKW  368 (876)
T ss_pred             CCCCHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEECHHCCCCCCCEEEECCCCCCCHHHHHHCCCCEE
T ss_conf             37754665303387764444323667535414316777762017985101367776104536676641068886346406


Q ss_pred             ------------------------------------------------CCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf             ------------------------------------------------456753234333777657864-----------
Q gi|255764461|r  202 ------------------------------------------------SGLKDLSLSRKTFDWGIKIPD-----------  222 (511)
Q Consensus       202 ------------------------------------------------~gl~Dw~ISR~~~~WGipiP~-----------  222 (511)
                                                                      .-|+||-||||| |||+|||-           
T Consensus       369 ~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQR-yWGTPIPivhc~~cG~vpV  447 (876)
T KOG0435         369 IICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQR-YWGTPIPIVHCDDCGAVPV  447 (876)
T ss_pred             EEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHH-CCCCCCCEEECCCCCCCCC
T ss_conf             888743215624432022554155788899999999874378762321133556432222-1689864587678886457


Q ss_pred             -------------------------------------C----CCCCCCCCHHHHHHHHCCCCCCCCCCC------C-CCC
Q ss_conf             -------------------------------------2----221464602444322001234676543------1-000
Q gi|255764461|r  223 -------------------------------------D----PQYIMYVWIDALTNYLTTTGYLDNPDG------S-KAK  254 (511)
Q Consensus       223 -------------------------------------~----~~~~~YVWfDa~~gY~s~~~~~~~~~~------~-~~~  254 (511)
                                                           .    |-.|+..|+|+..=|+-   |+...+.      . -.+
T Consensus       448 pes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlR---ylDpkN~e~~~d~a~a~k  524 (876)
T KOG0435         448 PESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLR---YLDPKNPEEPFDKAKAKK  524 (876)
T ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCHHHCCCEEEEE---ECCCCCCCCCCCHHHHHC
T ss_conf             58878854653123578899641236561356866799643455541001003135676---237898545442556532


Q ss_pred             CCCCCHHCCCCCCC------------------------CHHCCHHHHHHHHH-------H-HHCCCCC-CCC----CCEE
Q ss_conf             24110000456432------------------------10001024776543-------3-1012323-334----3033
Q gi|255764461|r  255 FWPADLHVIGKDIL------------------------RFHAIYWPAFLLSA-------N-LPLPKKV-FSH----GFIL  297 (511)
Q Consensus       255 ~w~~d~~~~G~Dii------------------------~Fh~i~~pa~l~~~-------~-~~~p~~i-~~~----g~l~  297 (511)
                      +-|.|+++.|++-.                        +|+.++=..|.++.       | +-.|+.+ .++    -+++
T Consensus       525 ~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vl  604 (876)
T KOG0435         525 NMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVL  604 (876)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCEEEE
T ss_conf             68615885548999999999999999875528776887488887510003417862777762787776663477663575


Q ss_pred             EC--------CCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf             05--------8601000002211100000022111211100002478730111222111001332110221021345565
Q gi|255764461|r  298 HK--------GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMI  369 (511)
Q Consensus       298 ~~--------G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~  369 (511)
                      .+        =+|||||++|+|+|.+++.+||+|.+|+|++..+|+..++++++..+....+  +..++|++++++..  
T Consensus       605 k~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~r--wl~riw~l~~~~~~--  680 (876)
T KOG0435         605 KNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKR--WLQRIWALVSQILQ--  680 (876)
T ss_pred             CCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHHH--
T ss_conf             37995035448873202357989899998848317789998617865666666332454999--99999999887777--


Q ss_pred             HHCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
Q ss_conf             31233210345558----955656678999999999987750-3589999999999999978865418701216999999
Q gi|255764461|r  370 LKDYDGMIPTPGAF----TESDESILSVCSRVLQEIRENMQN-QLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRA  444 (511)
Q Consensus       370 ~k~~~g~ip~~~~~----~~~D~~ll~~l~~~~~~v~~a~e~-~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~  444 (511)
                       +.-+|..+....+    ...+..+.+..+..++++++.||. +.++.|+..+|.|.+...+-....    +..+. + .
T Consensus       681 -ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~----~~h~~-~-~  753 (876)
T KOG0435         681 -ARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIV----LVHSP-E-F  753 (876)
T ss_pred             -HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCH-H-H
T ss_conf             -775278655654444331367899999999998756788888888899999998878998752334----11473-7-8


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             999999999999999985432248999999984988
Q gi|255764461|r  445 STVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA  480 (511)
Q Consensus       445 ~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~  480 (511)
                             -.++..+.+||+|++|+.|+|+|+.|+-.
T Consensus       754 -------~~al~~lv~mlaP~aPh~asE~Ws~l~~~  782 (876)
T KOG0435         754 -------ERALEALVIMLAPFAPHVASELWSALAND  782 (876)
T ss_pred             -------HHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             -------89999999997125754589999998422


No 32 
>KOG0433 consensus
Probab=100.00  E-value=0  Score=463.04  Aligned_cols=436  Identities=23%  Similarity=0.354  Sum_probs=326.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH-HHHHH------CCCCHHHH-------HHHHHHHHH
Q ss_conf             99883222478978999999998858980362364370227999-99998------39998999-------999999999
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIA-KAAQN------AGVTTKVF-------VDQNSRNFR   81 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~-~~A~~------~g~~p~e~-------~~~~~~~~~   81 (511)
                      +||.||||||++-|+.||+-||+-++|..|.|++||||||+||+ .+|.+      ..+||.|+       ++.-.+.++
T Consensus        66 anG~lhlghAlnKILkdiinr~~l~~g~~v~yvPGWDCHGLPIEs~Kals~l~~~~~~~spleiR~kAr~fA~~AIk~Q~  145 (937)
T KOG0433          66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM  145 (937)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             88980167789899999999999974874425789876887368778755321211467818999999999999999999


Q ss_pred             HHHHHHCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCC------------
Q ss_conf             999980889886---74778888999999998887543102211000101133430155667211122------------
Q gi|255764461|r   82 DMADVLDISYDD---FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGAD------------  146 (511)
Q Consensus        82 ~~~~~~~i~~D~---~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~------------  146 (511)
                      +.|+++||--|+   |. |.+|+++...-++|.+|+++|+||+.-.+++|+|.-.+.|+++++++.++            
T Consensus       146 e~F~r~gv~aDW~npY~-T~~~~yeaaQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L  224 (937)
T KOG0433         146 EAFRRWGVTADWENPYV-TKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKL  224 (937)
T ss_pred             HHHHHHEEECCCCCCEE-ECCHHHHHHHHHHHHHHHHCCCEECCCCCCEECCCCHHHHHHHHCCCCCCCCCEEEEEEEEC
T ss_conf             99887501105788306-23807789999999999866613305776013675312555643157867755148999863


Q ss_pred             --------------------------------------------------------------------------CC----
Q ss_conf             --------------------------------------------------------------------------22----
Q gi|255764461|r  147 --------------------------------------------------------------------------GQ----  148 (511)
Q Consensus       147 --------------------------------------------------------------------------~~----  148 (511)
                                                                                                |+    
T Consensus       225 ~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t  304 (937)
T KOG0433         225 INFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGT  304 (937)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHCCCCEEEEEE
T ss_conf             67762212577766747999984787545466413532334058999236776659997001066665313864345300


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  149 --------------------------------------------------------------------------------  148 (511)
Q Consensus       149 --------------------------------------------------------------------------------  148 (511)
                                                                                                      
T Consensus       305 ~~g~~L~~~~Y~hpl~~~~~~P~l~g~hVT~~~GTGLVHTAPaHG~eDYlv~l~~gl~~~s~VD~~G~yT~ea~~~l~Gk  384 (937)
T KOG0433         305 VKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGK  384 (937)
T ss_pred             CCHHHCCCCEECCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf             36223157623686765568864246633047566204417877748777776439976665577771340146412561


Q ss_pred             -----------------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             -----------------------------222233200003454434466644444344433332100067654577541
Q gi|255764461|r  149 -----------------------------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISF  199 (511)
Q Consensus       149 -----------------------------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~w  199 (511)
                                                   +...+..|+.+|.++|||+++.+++....+.++.- .+ .|....+.+..+
T Consensus       385 ~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~V-k~-~P~~~~~rl~~~  462 (937)
T KOG0433         385 EVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDV-KV-APGDSDLRLKQL  462 (937)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEHHHHHHHHHHHHHHC-EE-CCCCHHHHHHHH
T ss_conf             1232630769999865455201023258865455896599506155024775506899988512-43-786308899999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------CCC--------------
Q ss_conf             034567532343337776578642---------------------------------------221--------------
Q gi|255764461|r  200 VKSGLKDLSLSRKTFDWGIKIPDD---------------------------------------PQY--------------  226 (511)
Q Consensus       200 l~~gl~Dw~ISR~~~~WGipiP~~---------------------------------------~~~--------------  226 (511)
                      ++. .++||||||| -||+|||.-                                       |++              
T Consensus       463 ~~~-Rp~WCISRQR-~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~d~a~ey~k  540 (937)
T KOG0433         463 VTT-RPSWCISRQR-VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKK  540 (937)
T ss_pred             HCC-CCCCEEEECC-CCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCHHHHCCHHHHCCCCHHHHHHCC
T ss_conf             717-9740553210-15885205785489835125899999999998718763276785671707663013116887436


Q ss_pred             ---CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHH--HH-HHHCCCCCCCCCCEEE
Q ss_conf             ---464602444322001234676543100024110000456432--100010247765--43-3101232333430330
Q gi|255764461|r  227 ---IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLL--SA-NLPLPKKVFSHGFILH  298 (511)
Q Consensus       227 ---~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~--~~-~~~~p~~i~~~g~l~~  298 (511)
                         +++||||+      ++.|-.-...  .+--++|+.+-|.|..  ||.+.    +|.  |. +..+++.|++|||.+.
T Consensus       541 gtDimDVWFDS------GssWs~v~~~--~~~~~aDv~LEG~DQ~rGWFQSs----LLTsvA~q~kAPYk~vivHGFtlD  608 (937)
T KOG0433         541 GTDIMDVWFDS------GSSWSAVLDN--EREHVADVYLEGVDQFRGWFQSS----LLTSVAVQNKAPYKKVIVHGFTLD  608 (937)
T ss_pred             CCCEEEEEECC------CCCCEEECCC--CCCCCEEEEEECCHHCCHHHHHH----HHHHHHHHCCCCCHHEEEEEEEEC
T ss_conf             88316667628------8851000478--88750006884412012378999----999998724687232156203766


Q ss_pred             C-CCCCCHHHCCCCCCCCHHHH------CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             5-86010000022111000000------2211121110000247873011122211100133211022102134556531
Q gi|255764461|r  299 K-GEKISKSLGNVIDPIEVIEE------VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILK  371 (511)
Q Consensus       299 ~-G~KMSKS~GN~I~~~e~l~~------~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k  371 (511)
                      | |.|||||+||+|+|..+++.      ||+|++|||++. .....|+..+..-+.+.  .|-+-|+-|    +.+|+.-
T Consensus       609 E~G~KMSKSlGNVidP~~vi~G~~k~payGaD~LR~WVA~-s~~t~d~~iGp~il~qv--~e~l~K~R~----T~RfllG  681 (937)
T KOG0433         609 ENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIKFRN----TFRFLLG  681 (937)
T ss_pred             CCCCCHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEC-CCCCCCEECCHHHHHHH--HHHHHHHHH----HHHHHHH
T ss_conf             7754210022675788998477566887564100134423-55557510288999999--999999975----7798850


Q ss_pred             CC---CC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCC--CH
Q ss_conf             23---32---1034555895565667899999999998775035899999999999--999788654187012169--99
Q gi|255764461|r  372 DY---DG---MIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKT--NP  441 (511)
Q Consensus       372 ~~---~g---~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~--d~  441 (511)
                      +.   ++   .+| ...+.-.|+..+..+.++.+++++.|++|+|++++..+..|.  ...|.|++..+. .|+.+  +.
T Consensus       682 nl~d~~~~~~~~p-~~dl~~iDqy~L~ql~~~~~~i~elY~~Y~f~kVv~~lq~F~~~~lSa~YfdivKD-RLY~~~~~s  759 (937)
T KOG0433         682 NLQDFDGKQVKFP-LKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKD-RLYCDKVGS  759 (937)
T ss_pred             CCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCC
T ss_conf             4112477655100-10322324999999999999999999851589999999999997766789998766-530588886


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             ---999999999999999999985432248999999984988
Q gi|255764461|r  442 ---DRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA  480 (511)
Q Consensus       442 ---~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~  480 (511)
                         ..++++|+.++.   .++..++||+|+++||+|+.|-..
T Consensus       760 ~~rrs~QttL~h~l~---~l~~~iaPIlP~LaeEvwq~lP~~  798 (937)
T KOG0433         760 ESRRSAQTTLHHLLH---NLAHIISPILPHLAEEVWQHLPGS  798 (937)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             888899999999999---999997343178899999748787


No 33 
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00  E-value=0  Score=451.23  Aligned_cols=291  Identities=24%  Similarity=0.292  Sum_probs=218.4

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             88817997888999988322247897899999999885898036236437022799999998399989999999999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD   82 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~   82 (511)
                      ++.++|||+|++|  +.+|||||+++|.+|+++||+|++|++|.|+||+||||.||+.+|+++|++|+|+|+++.+.|++
T Consensus         8 ~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~~~~~F~~   85 (301)
T pfam01406         8 GKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITAYTK   85 (301)
T ss_pred             CEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9378997899068--99752233689999999999997499469996778631799999998098653799999999998


Q ss_pred             HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf             99980889-88674778888999999998887543102211000-10113343015566721112222222233200003
Q gi|255764461|r   83 MADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYS-GWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWM  160 (511)
Q Consensus        83 ~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~-~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~  160 (511)
                      +|++|||+ .|.|.||++  |.+.+++++++|.++|+||+++.. ++||..+...       +|   .+.   +..++-+
T Consensus        86 ~~~~L~I~~~d~~~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~~~~-------yg---~l~---~~~~~~~  150 (301)
T pfam01406        86 DMDALNVLPPDLEPRVTE--HIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPD-------YG---KLS---GQNLEQL  150 (301)
T ss_pred             HHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCC-------CC---CCC---CCCHHHH
T ss_conf             899849828986877543--57999999999997797687269988996667465-------44---046---4357777


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             45443446664444434443333210006765457754103456753234333777657864222146460244432200
Q gi|255764461|r  161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT  240 (511)
Q Consensus       161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s  240 (511)
                      ....        ........++..++.++...+        .+-..|    +. .||++.|+.     ++|.+|...+. 
T Consensus       151 ~~~~--------~~~~~~~k~~~~df~Lwk~~~--------~~~~~~----~~-pwg~~~PgW-----hie~~~~~~~~-  203 (301)
T pfam01406       151 EAGA--------RGEVGEGKRDPLDFALWKASK--------EGEPSW----DS-PWGKGRPGW-----HIECSAMARKY-  203 (301)
T ss_pred             HCCC--------CCCCCCCCCCCCHHHEECCCC--------CCCCCC----CC-CCCCCCCCC-----CEEEEHHHHHH-
T ss_conf             5257--------766443325803533211456--------678775----57-777898975-----46650677874-


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHH
Q ss_conf             123467654310002411000045643210001024776543-3101232333430330586010000022111000000
Q gi|255764461|r  241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEE  319 (511)
Q Consensus       241 ~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~  319 (511)
                          +         ..+.|+|++|+||++||.++||||++|+ +.++++.++.||||+++|+|||||+||+|+|.|++++
T Consensus       204 ----~---------g~~~DiH~~G~Di~~pH~~~~~A~~~a~~~~~~~~~~~h~G~l~~~G~KMSKSlGNvv~~~dl~~~  270 (301)
T pfam01406       204 ----L---------GSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKR  270 (301)
T ss_pred             ----C---------CCCCCEECCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCEECCCCCCCCCCHHHHHHH
T ss_conf             ----1---------898733027651013552419999998519995149998527987883866647873779999876


Q ss_pred             CCCCCCCHHHEEECCCCCCCEECCCCCCCCHH
Q ss_conf             22111211100002478730111222111001
Q gi|255764461|r  320 VGVDALRYFLVREIACGKDGFYDKDGLKKRVN  351 (511)
Q Consensus       320 ~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n  351 (511)
                      ||+|++||||+ ..++++|++||++.+.++.|
T Consensus       271 ~g~d~~Ryfll-~~~y~~~~~fs~~~l~~a~n  301 (301)
T pfam01406       271 YDPRILRYFLL-SVHYRSPLDFSEELLEQAKN  301 (301)
T ss_pred             CCHHHHHHHHH-HCCCCCCCCCCHHHHHHHHC
T ss_conf             89999999998-46589987879999997239


No 34 
>KOG0434 consensus
Probab=100.00  E-value=0  Score=427.82  Aligned_cols=469  Identities=23%  Similarity=0.345  Sum_probs=357.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-CCCC------------
Q ss_conf             888817997888999988322247897899999999885898036236437022799999998-3999------------
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN-AGVT------------   68 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~-~g~~------------   68 (511)
                      .++++|..--+||.|.|-+|-||+..-+..|+..||.-|.||.|----|||+||+||+-.-.| +|++            
T Consensus        35 k~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~k  114 (1070)
T KOG0434          35 KGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDK  114 (1070)
T ss_pred             CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEECHHCCCCCHHHHHHHHHHH
T ss_conf             79984261369965568986214454468777777743046310220166568885010000220888789999970776


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCH----
Q ss_conf             ----89999999999999999808--89886747788889999999988875431022110001011334301556----
Q gi|255764461|r   69 ----TKVFVDQNSRNFRDMADVLD--ISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYND----  138 (511)
Q Consensus        69 ----p~e~~~~~~~~~~~~~~~~~--i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~----  138 (511)
                          ++.++-+|..+.+++..++|  |+||+=++|..|...+.|.++|++|+++|++|+|-.-..|+..|.+-|+.    
T Consensus       115 YN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~  194 (1070)
T KOG0434         115 YNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQ  194 (1070)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEECHHHHHHHHHHHHHHHHCCCEECCEEEECCCCCCCCCCCCHHCC
T ss_conf             75898899998878899999863140432688512167899999999999986675531136310333358855000003


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|255764461|r  139 --------------------------------------------------------------------------------  138 (511)
Q Consensus       139 --------------------------------------------------------------------------------  138 (511)
                                                                                                      
T Consensus       195 QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~  274 (1070)
T KOG0434         195 QNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNY  274 (1070)
T ss_pred             CCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCH
T ss_conf             67656899707997312688611279874587557666047876872799998436775899729877777358643207


Q ss_pred             -------------------------------------HHHCCCC------------------------------------
Q ss_conf             -------------------------------------6721112------------------------------------
Q gi|255764461|r  139 -------------------------------------DEVYKGA------------------------------------  145 (511)
Q Consensus       139 -------------------------------------~~v~~~~------------------------------------  145 (511)
                                                           ++|..++                                    
T Consensus       275 eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVD  354 (1070)
T KOG0434         275 EILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVD  354 (1070)
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99986265313586457665689987315736996157274278861365077657054899997395137787888616


Q ss_pred             -C-----------CC------------------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -2-----------22------------------------------22223320000345443446664444434443333
Q gi|255764461|r  146 -D-----------GQ------------------------------YYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESH  183 (511)
Q Consensus       146 -~-----------~~------------------------------~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~  183 (511)
                       +           |+                              .|..+..|+..+.-.+||.+.....++|+.-.+ .
T Consensus       355 e~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~-~  433 (1070)
T KOG0434         355 ESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM-K  433 (1070)
T ss_pred             CCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHCCC-C
T ss_conf             677631005422552422143999999985274665565664467335589707876342765119977999985155-4


Q ss_pred             CCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------
Q ss_conf             2100067654-577541034567532343337776578642---------------------------------------
Q gi|255764461|r  184 PEFILPIERR-NEVISFVKSGLKDLSLSRKTFDWGIKIPDD---------------------------------------  223 (511)
Q Consensus       184 ~~~~~p~~~~-~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~---------------------------------------  223 (511)
                      ..|+ |...| +...+||++. +||.|||.| +||+|||..                                       
T Consensus       434 t~WV-P~~ikeKRF~NWL~nA-RDW~iSRnR-~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIp  510 (1070)
T KOG0434         434 THWV-PQNIKEKRFANWLKNA-RDWNISRNR-YWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIP  510 (1070)
T ss_pred             CCCC-CHHHHHHHHHHHHHHH-HHCCCCCCC-CCCCCCCEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHHHCCCEECC
T ss_conf             4347-7055677888887530-312110035-558885547736873579953288898840973114445414756504


Q ss_pred             --C--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--CHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf             --2--------21464602444322001234676543100024110000456432--10001024776543310123233
Q gi|255764461|r  224 --P--------QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL--RFHAIYWPAFLLSANLPLPKKVF  291 (511)
Q Consensus       224 --~--------~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii--~Fh~i~~pa~l~~~~~~~p~~i~  291 (511)
                        .        ..||.+||++..-+++..+|+++....++..+|+|.---|-|..  ||+|+.--+.++ -|.+++++++
T Consensus       511 s~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~L-F~kppfkNvI  589 (1070)
T KOG0434         511 SKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTAL-FGKPPFKNVI  589 (1070)
T ss_pred             CCCCCCCEEHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCHHEE
T ss_conf             678876212166676564315887620211885336777644966766513200220455799999987-1798522216


Q ss_pred             CCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECC-CCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHH-
Q ss_conf             3430330-586010000022111000000221112111000024-7873011122211100133211022102134556-
Q gi|255764461|r  292 SHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA-CGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSM-  368 (511)
Q Consensus       292 ~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~-~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f-  368 (511)
                      +||.++. ||+|||||+.|+.+|..++++||||++|+||+..-. ..+.+.|.+++..+.+...|. .|+| ..|..-- 
T Consensus       590 vnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~l-PW~N-syrF~~qn  667 (1070)
T KOG0434         590 VNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLL-PWYN-SYRFLVQN  667 (1070)
T ss_pred             EEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHH-HHHHHHHH
T ss_conf             701688121077766531598878988762620225665158410043344421118999876612-5567-78999988


Q ss_pred             --HHHCCCCCC--C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHCCCHHHCCC-
Q ss_conf             --531233210--3--45558955656678999999999987750358999999999999-997886541870121699-
Q gi|255764461|r  369 --ILKDYDGMI--P--TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVS-EVDRYFDAQKPWELKKTN-  440 (511)
Q Consensus       369 --~~k~~~g~i--p--~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~-~~N~yi~~~~PW~l~k~d-  440 (511)
                        ..+.-.|..  +  ...+.+..|+|+++..++++.-+++.|+.|+...++-.+..|++ .+|+||..++- .++.++ 
T Consensus       668 ~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRr-rlkGe~G  746 (1070)
T KOG0434         668 AALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRR-RLKGENG  746 (1070)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHEEHHHH-HHCCCCC
T ss_conf             887502458766633334662057899999999999999998875032415888999998754663012055-5257776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             99999999999999999999854322489999999849
Q gi|255764461|r  441 PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILF  478 (511)
Q Consensus       441 ~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg  478 (511)
                      ...+..+|.++.+++..++++|+||+||++|.||+.|.
T Consensus       747 ~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk  784 (1070)
T KOG0434         747 EHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLK  784 (1070)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             17889999999999999999975885488899999887


No 35 
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00  E-value=1.8e-44  Score=347.65  Aligned_cols=342  Identities=23%  Similarity=0.333  Sum_probs=239.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      +-++|+|.|.+|  +.+||||||+||.+|+++||+|..||+|.||   |+.||   +|+.+|+++|+++.|++++|.++|
T Consensus        23 ~v~~Y~CGPTVY--d~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDidD---Kii~~a~~~~~~~~~~~~~~~~~f   97 (460)
T PRK00260         23 KVKMYVCGPTVY--DYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDIDD---KIIKRANEEGESIKELTERYIAAF   97 (460)
T ss_pred             EEEEEECCCCCC--CCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             588996798488--873200030899999999999964993499982375419---999999981969999999999999


Q ss_pred             HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC
Q ss_conf             9999980889-886747788889999999988875431022110001011334301556672111222222223320000
Q gi|255764461|r   81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW  159 (511)
Q Consensus        81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~  159 (511)
                      .++|+.|||. +|.+.|++  +|...+..++++|.++|++|+.+..+|||+..-.  .-..+.+.. .+.. ..|..++.
T Consensus        98 ~~d~~~L~i~~p~~~~r~t--~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~--~YG~Ls~~~-~~~~-~~g~rv~~  171 (460)
T PRK00260         98 HEDMDALGVLRPDIEPRAT--EHIPEIIELIERLIEKGHAYEADGDVYFDVRKFP--DYGKLSGRN-LDDL-QAGARVEV  171 (460)
T ss_pred             HHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCC--CHHHCCCCC-CHHH-HCCCCCCC
T ss_conf             9999994899985224301--4799999999999857952884787996355553--303005653-0212-11565676


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             34544344666444443444333321000676545775410345675323433377765786422214646024443220
Q gi|255764461|r  160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYL  239 (511)
Q Consensus       160 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~  239 (511)
                                .       +.-+...+|.+++..        +.|-+.|.    .+ ||.   |.||              
T Consensus       172 ----------~-------~~K~~p~DFaLWK~~--------~~ge~~W~----SP-WG~---GRPG--------------  204 (460)
T PRK00260        172 ----------A-------EEKRDPLDFVLWKAA--------KPGEPSWD----SP-WGK---GRPG--------------  204 (460)
T ss_pred             ----------C-------CCCCCCCCHHHCCCC--------CCCCCCCC----CC-CCC---CCCC--------------
T ss_conf             ----------6-------344785532212788--------88887776----98-888---7987--------------


Q ss_pred             CCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCH-HCCHHHHHHHH-HHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCC
Q ss_conf             01234676543100024--11000045643210-00102477654-3310123233343033058601000002211100
Q gi|255764461|r  240 TTTGYLDNPDGSKAKFW--PADLHVIGKDILRF-HAIYWPAFLLS-ANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIE  315 (511)
Q Consensus       240 s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~F-h~i~~pa~l~~-~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e  315 (511)
                          |+.++.....++.  +-|||-.|.|.++- |-= =.|.-.+ .|.++.+.++.+|||+++|+|||||+||+|++.|
T Consensus       205 ----WHIECSaM~~~~LG~~~DIH~GG~DL~FPHHEN-EiAQs~a~~~~~~a~yW~H~g~l~i~g~KMSKSlgN~iti~d  279 (460)
T PRK00260        205 ----WHIECSAMSTKYLGETFDIHGGGSDLIFPHHEN-EIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRD  279 (460)
T ss_pred             ----CCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC-HHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCCCCCCHHH
T ss_conf             ----422637999987599754762452677899610-999998864898652456510576367175035787001999


Q ss_pred             HHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             00002211121110000247873011122211100133211022102134556531233210345558955656678999
Q gi|255764461|r  316 VIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCS  395 (511)
Q Consensus       316 ~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~  395 (511)
                      ++++|+++++||+|++ +++++.++||++.+.+..++  .+++.+++.++        +...     ....+       .
T Consensus       280 ll~~y~~~~lR~~lLs-~hYR~pl~fs~e~L~~a~~~--l~rl~~~~~~~--------~~~~-----~~~~~-------~  336 (460)
T PRK00260        280 LLKKYDPEVLRFFLLS-AHYRSPLNFSEEALEEAKKA--LERLYNALRNL--------EPAV-----APAGG-------E  336 (460)
T ss_pred             HHHHHCHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHH--------HHCC-----CCCCH-------H
T ss_conf             9987077999999985-46899667799999999999--99999999975--------5402-----55322-------7


Q ss_pred             HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999877-50358999999999999997886541
Q gi|255764461|r  396 RVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDAQ  431 (511)
Q Consensus       396 ~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~~  431 (511)
                      .+.+++.++| |+++++.|+..|+++++.+|++++..
T Consensus       337 ~~~~~F~~AL~DDLNTP~Ala~Lfelvk~iN~~l~~~  373 (460)
T PRK00260        337 EFEERFIEAMDDDFNTPEALAVLFELAKEINRLLDAK  373 (460)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8999999987522786999999999999999875025


No 36 
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=6.2e-42  Score=329.00  Aligned_cols=346  Identities=23%  Similarity=0.293  Sum_probs=238.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      +-++|||.|.+|  ...||||||+||.+|+++||++.+||.|.||   |+-||   ||..+|.++|.++.+++++|.++|
T Consensus        22 ~V~mYvCGpTVY--d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD---KIi~rA~~~g~~~~ev~~~~i~~f   96 (464)
T COG0215          22 KVKMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD---KIINRAREEGLSIREVAERYIAAF   96 (464)
T ss_pred             EEEEEECCCCCC--CCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             168996188257--764456676520299999999982970799964666638---999999982999999999999999


Q ss_pred             HHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE
Q ss_conf             999998088-988674778888999999998887543102211-000101133430155667211122222222332000
Q gi|255764461|r   81 RDMADVLDI-SYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG-CYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQ  158 (511)
Q Consensus        81 ~~~~~~~~i-~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~-~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~  158 (511)
                      .+++++||| ..|.+.|.+  +|...+.+++++|.++|++|.. ...++|++..-.  .-.++.+....+. ...|..++
T Consensus        97 ~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~--~YG~LS~~~~le~-l~~gar~~  171 (464)
T COG0215          97 FEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK--DYGKLSGRDSLEE-LQAGARVE  171 (464)
T ss_pred             HHHHHHHCCCCCCCCCCHH--HCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHH--HHHHHCCCCCHHH-HHHCCCCC
T ss_conf             9999982999986557476--47999999999999779658846982899524303--1786528987667-75135456


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             03454434466644444344433332100067654577541034567532343337776578642221464602444322
Q gi|255764461|r  159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNY  238 (511)
Q Consensus       159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY  238 (511)
                      .                 .+..++.-++++++..+        .|-+-|.    +| ||   +|.||+            
T Consensus       172 ~-----------------~~~Krnp~DFvLWK~sk--------~gEp~W~----SP-WG---~GRPGW------------  206 (464)
T COG0215         172 V-----------------DEEKRNPLDFVLWKAAK--------PGEPSWD----SP-WG---KGRPGW------------  206 (464)
T ss_pred             C-----------------CCCCCCCHHHEEECCCC--------CCCCCCC----CC-CC---CCCCCH------------
T ss_conf             6-----------------54558800112442589--------9998877----99-88---999944------------


Q ss_pred             HCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHHCCCCCCC
Q ss_conf             001234676543100024--11000045643210001024776543-3-1012323334303305860100000221110
Q gi|255764461|r  239 LTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSLGNVIDPI  314 (511)
Q Consensus       239 ~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~  314 (511)
                            +.++.....++.  .-|||-.|.|.++-|---=.|...+. | .++-++++.+|||+++|+|||||+||+|++.
T Consensus       207 ------HIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~  280 (464)
T COG0215         207 ------HIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVR  280 (464)
T ss_pred             ------HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHH
T ss_conf             ------68899999987089751246850255888630899987642997600586882645246727652357766799


Q ss_pred             CHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             00000221112111000024787301112221110013321102210213455653123321034555895565667899
Q gi|255764461|r  315 EVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVC  394 (511)
Q Consensus       315 e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l  394 (511)
                      |++++|++.++||+|++ ++++++++||++.+.+..+.  ...+-|++.|+..       .....  ...        .+
T Consensus       281 d~l~~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~--l~rl~~~~~~~~~-------~~~~~--~~~--------~~  340 (464)
T COG0215         281 DLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKA--LERLYNALRRLRD-------LAGDA--ELA--------DL  340 (464)
T ss_pred             HHHHHCCHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH-------HCCCC--CCC--------HH
T ss_conf             99865487999999998-77577656689999999999--9999999998874-------01322--211--------06


Q ss_pred             HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999877-5035899999999999999788654
Q gi|255764461|r  395 SRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA  430 (511)
Q Consensus       395 ~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~  430 (511)
                      .+...++.++| ++|++..|+..++++++.+|..++.
T Consensus       341 ~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~  377 (464)
T COG0215         341 KEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE  377 (464)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             7899999999872258089999999999987654202


No 37 
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00  E-value=1.5e-41  Score=326.18  Aligned_cols=370  Identities=22%  Similarity=0.298  Sum_probs=250.9

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEEC---CCC----------CCCCHHHHHHHHHCCCCH
Q ss_conf             881799788899998832224789789999999988-589803623---643----------702279999999839998
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHR-LDGLDVLFT---TGT----------DEHGQKIAKAAQNAGVTT   69 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r-~~G~~v~~~---~g~----------D~hg~~i~~~A~~~g~~p   69 (511)
                      +-++|||.|..|  ...||||||++|.+|+++||+| ..||+|.||   |+-          ||   ||+.+|.++|.|.
T Consensus        22 ~V~~Y~CGpTVY--d~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~NiTDIGhltGdlddGDD---KIIk~A~~~~~~~   96 (660)
T TIGR00435        22 KVKMYVCGPTVY--DYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNITDIGHLTGDLDDGDD---KIIKRAREEGETV   96 (660)
T ss_pred             EEEEEEECCHHH--HHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCH---HHHHHHHHCCCCH
T ss_conf             667997073176--21030346630257888999988758867888643120000167777504---8999987515647


Q ss_pred             HHH-----------------------------------------------------------------------------
Q ss_conf             999-----------------------------------------------------------------------------
Q gi|255764461|r   70 KVF-----------------------------------------------------------------------------   72 (511)
Q Consensus        70 ~e~-----------------------------------------------------------------------------   72 (511)
                      .++                                                                             
T Consensus        97 ~~~kendtkfnatvvdkvktalfqyinknftiqGseiktieefetWlsnadtetlklenPkfP~hvtavqnaiesitkGd  176 (660)
T TIGR00435        97 EEVKENDTKFNATVVDKVKTALFQYINKNFTIQGSEIKTIEEFETWLSNADTETLKLENPKFPMHVTAVQNAIESITKGD  176 (660)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             88740122000256778899999987520011252000367777765203310100137888521677888887642366


Q ss_pred             -------------------------------HHHHHHHHHH-----HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             -------------------------------9999999999-----99980889-8867477888899999999888754
Q gi|255764461|r   73 -------------------------------VDQNSRNFRD-----MADVLDIS-YDDFIRTTEKRHHDTCRILWKKISD  115 (511)
Q Consensus        73 -------------------------------~~~~~~~~~~-----~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~  115 (511)
                                                     ++++.++|.+     +|++|||- .|...|.+  +|...+.++..+|.+
T Consensus       177 s~daevafekvkdvtvPlldkelGstisnPe~~~~i~aY~~qkfndD~~aLNv~~p~~~pr~t--e~id~iie~i~~L~~  254 (660)
T TIGR00435       177 SMDAEVAFEKVKDVTVPLLDKELGSTISNPESERFIEAYFEQKFNDDLEALNVLPPDLEPRVT--EHIDEIIEFIEQLIE  254 (660)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCCHHHHHHHHHHH
T ss_conf             302567666440010210101113432560168899999865578888742873884016631--124314789999986


Q ss_pred             HHCCCCCC-HHHHCCCCCCCCCCHHHHCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHH
Q ss_conf             31022110-001011334301556672111222222223---32000034544344666444-44344433332100067
Q gi|255764461|r  116 KGDIYKGC-YSGWYSLRDEAYYNDDEVYKGADGQYYNAQ---HNPVQWMEEEGYFFRLSAYQ-DKLLSYYESHPEFILPI  190 (511)
Q Consensus       116 ~G~iy~~~-~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~---~~p~~~~~~~~~f~~l~~~~-~~l~~~~~~~~~~~~p~  190 (511)
                      |||+|..+ ..+||++.+-.        +..+-.|....   ..-++.+...+- .+....+ +-.+  -+...+|+++.
T Consensus       255 KgyAY~~~~GdVYF~v~~f~--------ksPnh~YG~Ls~Wn~~~~~~l~~g~~-~~v~~~~P~Ga~--Kr~~~DFvLWK  323 (660)
T TIGR00435       255 KGYAYVSDNGDVYFDVSKFK--------KSPNHDYGKLSGWNKQSLDELEAGAR-VRVDEAKPDGAK--KRNKLDFVLWK  323 (660)
T ss_pred             CCCEEEECCCCEEEECCCCC--------CCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCC--CCCCCCHHHHH
T ss_conf             89205306886465316778--------88888764326755554466625786-455235887533--56776502220


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCHHCC
Q ss_conf             654577541034567532343337776578642221464602444322001234676543100024-------1100004
Q gi|255764461|r  191 ERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFW-------PADLHVI  263 (511)
Q Consensus       191 ~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w-------~~d~~~~  263 (511)
                      ..+.        | .|-.++=++| ||-   |.||                  |+.++.....++.       .-|||..
T Consensus       324 ~~k~--------g-~~~E~~W~SP-WG~---GRPG------------------WHiECS~M~~~~LgltntP~~~DIH~G  372 (660)
T TIGR00435       324 SAKE--------G-KDQEPKWDSP-WGK---GRPG------------------WHIECSAMVDKYLGLTNTPDQIDIHGG  372 (660)
T ss_pred             CCCC--------C-CCCCCCCCCC-CCC---CCCC------------------HHHHHHHHHHHHCCCCCCCCCCEECCC
T ss_conf             0678--------8-7777431777-888---8881------------------589999999975135678654301348


Q ss_pred             CCCCCCHHCCHHHHHHHH-HH-HHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHH-HCCCCCCCHHHEEECCCCCCCE
Q ss_conf             564321000102477654-33-10123233343033058601000002211100000-0221112111000024787301
Q gi|255764461|r  264 GKDILRFHAIYWPAFLLS-AN-LPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIE-EVGVDALRYFLVREIACGKDGF  340 (511)
Q Consensus       264 G~Dii~Fh~i~~pa~l~~-~~-~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~-~~g~D~lR~~l~~~~~~~~D~~  340 (511)
                      |.|.++-|=-==-|+-+| .| .++-++++++|||.+||+||||||||+|++.|+|+ .|.+.+|||+|++ +++++.+|
T Consensus       373 G~DL~FPHHENE~Aqs~a~~gn~~~~~yW~H~G~~~id~eKMSKSLgNF~~v~D~L~q~~d~~~lR~~~l~-~HYr~pLd  451 (660)
T TIGR00435       373 GVDLIFPHHENEIAQSEALFGNKQLAKYWLHNGFLMIDNEKMSKSLGNFITVRDVLKQNYDPEVLRYLLLS-VHYRSPLD  451 (660)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHCCCCC
T ss_conf             87788878778999999872898568999851778976721651555688888687427689999999876-55314567


Q ss_pred             ECCCCCCCCH---HHHHHHHHHHCCHHHHHHHHHCCCCC--CC-CCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCHHHH
Q ss_conf             1122211100---13321102210213455653123321--03-455589556566789999999999877-50358999
Q gi|255764461|r  341 YDKDGLKKRV---NADLANGIGNLVSRSVSMILKDYDGM--IP-TPGAFTESDESILSVCSRVLQEIRENM-QNQLIHRA  413 (511)
Q Consensus       341 Fs~~~~~~~~---n~~L~~~lgN~~~R~~~f~~k~~~g~--ip-~~~~~~~~D~~ll~~l~~~~~~v~~a~-e~~~~~~A  413 (511)
                      ||++.+.+.-   ++     +-||.. .++-+...+++.  .. .........+.+...+.+...++..+| +++++..|
T Consensus       452 f~e~~l~~aksfe~~-----~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Eseskvhsa~~dDlN~a~A  525 (660)
T TIGR00435       452 FSEELLEAAKSFENA-----LERLYK-ALRNLDTDLAYSKEFGENKDPKNVDEKEFEAAFEESESKVHSAMDDDLNTANA  525 (660)
T ss_pred             CCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             478899999889999-----999999-99987531034222342435664225657866432035778887505780689


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999978865
Q gi|255764461|r  414 LAQVISLVSEVDRYFD  429 (511)
Q Consensus       414 l~~i~~l~~~~N~yi~  429 (511)
                      ++.|+++++.+|+-.+
T Consensus       526 l~vL~el~~~~N~~~~  541 (660)
T TIGR00435       526 LAVLFELAKSINKKLD  541 (660)
T ss_pred             HHHHHHHHHHHCCCCC
T ss_conf             9999999998400157


No 38 
>KOG0437 consensus
Probab=100.00  E-value=1.3e-41  Score=326.52  Aligned_cols=447  Identities=23%  Similarity=0.354  Sum_probs=281.0

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-------CCCH---HH-
Q ss_conf             888179978889999883222478978999999998858980362364370227999999983-------9998---99-
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-------GVTT---KV-   71 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-------g~~p---~e-   71 (511)
                      .++||++|-|.||.||.|||||+.+.--.|+.+-|+|++|++|+|+-|.-|-|.||...|.++       |.+|   +| 
T Consensus        42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~  121 (1080)
T KOG0437          42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEE  121 (1080)
T ss_pred             CCCCEEEECCCCCCCCCEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             66751684365021760212301002354888899984585477403335479701775799999999738999981443


Q ss_pred             -------------------------HHHH-----------------------H----------HHHHHHHHHHHCCCCCC
Q ss_conf             -------------------------9999-----------------------9----------99999999980889886
Q gi|255764461|r   72 -------------------------FVDQ-----------------------N----------SRNFRDMADVLDISYDD   93 (511)
Q Consensus        72 -------------------------~~~~-----------------------~----------~~~~~~~~~~~~i~~D~   93 (511)
                                               .+.+                       +          ----.++++++|...|+
T Consensus       122 eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDW  201 (1080)
T KOG0437         122 EEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDW  201 (1080)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCE
T ss_conf             14565215662011231003520577776046402699999809998881316671378884883778999984788642


Q ss_pred             ---CCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCC-------------------------
Q ss_conf             ---74778-8889999999988875431022110001011334301556672111-------------------------
Q gi|255764461|r   94 ---FIRTT-EKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKG-------------------------  144 (511)
Q Consensus        94 ---~~rT~-~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~-------------------------  144 (511)
                         |+.|. +|-+-.+|++-|.+|.+.|.|..+..-.-|||.|++-..|..-..|                         
T Consensus       202 RRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l~~  281 (1080)
T KOG0437         202 RRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKALSS  281 (1080)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHCCC
T ss_conf             33013056654578899999998886078554760366367889855344312388878634789999841463333155


Q ss_pred             ---------------------CC------CCC--CCCC-----------------------------------C------
Q ss_conf             ---------------------22------222--2223-----------------------------------3------
Q gi|255764461|r  145 ---------------------AD------GQY--YNAQ-----------------------------------H------  154 (511)
Q Consensus       145 ---------------------~~------~~~--~~~~-----------------------------------~------  154 (511)
                                           .+      +++  .++|                                   |      
T Consensus       282 ~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa  361 (1080)
T KOG0437         282 LKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGA  361 (1080)
T ss_pred             CCCCEEEEEEHHCCCCCCCCCCCEEECCCCCEEEEEECCCCEEEEEEHHHHHHCCHHHCCCCCCCCCCEEEECCHHHCCC
T ss_conf             33320365410127753357642388688537768833774278860687752003431455786551144334322177


Q ss_pred             -----------------------------------CCEECC------CCC-------CC-------CCCCCCCCC-----
Q ss_conf             -----------------------------------200003------454-------43-------446664444-----
Q gi|255764461|r  155 -----------------------------------NPVQWM------EEE-------GY-------FFRLSAYQD-----  174 (511)
Q Consensus       155 -----------------------------------~p~~~~------~~~-------~~-------f~~l~~~~~-----  174 (511)
                                                         +|-++.      ...       .|       -++.+.|-|     
T Consensus       362 ~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~  441 (1080)
T KOG0437         362 PLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEV  441 (1080)
T ss_pred             CCCCCCHHHHEEEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEECCCCCHHHHHH
T ss_conf             44685002110142230025505775047847899802567777664152003778023024452035236633166999


Q ss_pred             --------------CCCC--------------------------------------------------------------
Q ss_conf             --------------4344--------------------------------------------------------------
Q gi|255764461|r  175 --------------KLLS--------------------------------------------------------------  178 (511)
Q Consensus       175 --------------~l~~--------------------------------------------------------------  178 (511)
                                    +|.+                                                              
T Consensus       442 vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiV  521 (1080)
T KOG0437         442 VCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECIV  521 (1080)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCEEE
T ss_conf             99987305811678888766788987640362897144650077654678988885033256337502331357882599


Q ss_pred             -----CCCC--CCCC------------CCHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf             -----4333--3210------------006765457---7541034567532343337776578642221--------46
Q gi|255764461|r  179 -----YYES--HPEF------------ILPIERRNE---VISFVKSGLKDLSLSRKTFDWGIKIPDDPQY--------IM  228 (511)
Q Consensus       179 -----~~~~--~~~~------------~~p~~~~~~---~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~--------~~  228 (511)
                           |+-+  .+.|            ....+.|+-   .++    .|..|..||. ..-|+.+|+|+..        +|
T Consensus       522 AL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLd----WL~~wacsRs-yGLGTrlPWD~qyLvESLSDSTI  596 (1080)
T KOG0437         522 ALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLD----WLGQWACSRS-YGLGTRLPWDEQYLVESLSDSTI  596 (1080)
T ss_pred             EECCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHCC-CCCCCCCCCCHHHHHHHCCHHHH
T ss_conf             941302212472989999999986553069788877888889----9875101201-16777788767888776031289


Q ss_pred             CCCH---------------------------HHHHHHHCC-------C----CCCCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf             4602---------------------------444322001-------2----3467654310002411000045643210
Q gi|255764461|r  229 YVWI---------------------------DALTNYLTT-------T----GYLDNPDGSKAKFWPADLHVIGKDILRF  270 (511)
Q Consensus       229 YVWf---------------------------Da~~gY~s~-------~----~~~~~~~~~~~~~w~~d~~~~G~Dii~F  270 (511)
                      |--|                           |....|+=.       +    .-+.+...+|+.|+|-|+++.|||.|+-
T Consensus       597 YmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~N  676 (1080)
T KOG0437         597 YMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPN  676 (1080)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             99999999998776406776657789465478988786506998767784099999999763100301344234213523


Q ss_pred             --------HCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEEC
Q ss_conf             --------001024776543310123233343033058601000002211100000022111211100002478730111
Q gi|255764461|r  271 --------HAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYD  342 (511)
Q Consensus       271 --------h~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs  342 (511)
                              |+.+||      ...||+.|.+||||++|++|||||.||+.+..+.++++|||+.|+.|+-.+.--+|.||.
T Consensus       677 HLtfflynHvAl~~------~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~  750 (1080)
T KOG0437         677 HLTFFLYNHVALFP------EKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFV  750 (1080)
T ss_pred             CEEEEEEEHHHHCC------CCCCCCCCCCCCEEEECCHHCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf             13675540023154------002865311176677331220545677245999898738752045320226874343066


Q ss_pred             CCCCCCCHHHHHHHHHHHCCHHHHHH---HHHCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             22211100133211022102134556---53123321--03455589556566789999999999877503589999999
Q gi|255764461|r  343 KDGLKKRVNADLANGIGNLVSRSVSM---ILKDYDGM--IPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV  417 (511)
Q Consensus       343 ~~~~~~~~n~~L~~~lgN~~~R~~~f---~~k~~~g~--ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i  417 (511)
                      +....+.|            -|..++   +....++.  +-..-..+..|+.+.++++.++...+++|+...|+.|++.-
T Consensus       751 ea~AnAaI------------LRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~G  818 (1080)
T KOG0437         751 EANANAAI------------LRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYG  818 (1080)
T ss_pred             HHCCCHHH------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65023799------------999999999999974377652486277789999989999999999998886799999850


Q ss_pred             -HHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             -999999978865418701216999999999999999999999985432248999999984988000
Q gi|255764461|r  418 -ISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADEN  483 (511)
Q Consensus       418 -~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~~~~  483 (511)
                       +++...-..|-....       .. .-+..+   +..+..-+.||+||+||+|+.||..++.++..
T Consensus       819 fyd~qaArD~Yrel~g-------~~-mh~dLv---~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~  874 (1080)
T KOG0437         819 FYDLQAARDMYRELCG-------EG-MHRDLV---FRFIETQTLLLAPICPHLAEYIWRTVLKKNFS  874 (1080)
T ss_pred             HHHHHHHHHHHHHHHC-------CC-CCHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
T ss_conf             5889988999999704-------55-318999---99999999987412527999999996168855


No 39 
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00  E-value=3.8e-38  Score=300.97  Aligned_cols=338  Identities=20%  Similarity=0.229  Sum_probs=228.4

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      +-++|||.|.+|  +..||||+|+||.+|++.||++..||+|.||   |+.||   ||..+|.++|+++.+++++|.+.|
T Consensus         9 ~V~mY~CGPTVY--d~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDVDD---Kii~~A~~~g~~~~ela~~~~~~f   83 (384)
T PRK12418          9 TATMYVCGITPY--DATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDVDD---PLLERAARDGVDWRDLAAREIALF   83 (384)
T ss_pred             EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             689996688688--885423351689999999999980996499981050638---999999985939999999999999


Q ss_pred             HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC----HHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf             9999980889-886747788889999999988875431022110----00101133430155667211122222222332
Q gi|255764461|r   81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGC----YSGWYSLRDEAYYNDDEVYKGADGQYYNAQHN  155 (511)
Q Consensus        81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~----~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (511)
                      .++|++|||. .|.+.|.+  +|...+.++.++|.++|++|+.+    ..+||++..-.       .+|.   .   ++.
T Consensus        84 ~~d~~~Lnv~~p~~~praT--e~I~~ii~~I~~Li~~G~AY~~~~~~~G~VYFdv~~~~-------~YG~---l---s~~  148 (384)
T PRK12418         84 REDMAALRVLPPRDYVGAV--ESIPEVVELVEKLLASGAAYVVDDPEYGDVYFSVDATP-------QFGY---E---SGY  148 (384)
T ss_pred             HHHHHHCCCCCCCEECCCC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCHH-------HHCC---C---CCC
T ss_conf             9999982999995003211--37999999999999679557756888886899952422-------1145---0---159


Q ss_pred             CE-ECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00-003---45443446664444434443333210006765457754103456753234333777657864222146460
Q gi|255764461|r  156 PV-QWM---EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVW  231 (511)
Q Consensus       156 p~-~~~---~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVW  231 (511)
                      .. +..   .+..     .. .+.  ...+...+|.+++..+        .|-+-|    +.+ ||   +|.||      
T Consensus       149 ~~~~~~~~~~e~~-----~~-~~~--~~Kr~p~DFaLWK~~~--------~gEp~W----~SP-WG---~GRPG------  198 (384)
T PRK12418        149 DRETMLELFAERG-----GD-PDR--PGKRDPLDALLWRAAR--------PGEPSW----PSP-FG---PGRPG------  198 (384)
T ss_pred             CHHHHHHHHHHCC-----CC-CCC--CCCCCCCCEEEECCCC--------CCCCCC----CCC-CC---CCCCC------
T ss_conf             9899987753315-----77-543--3578866603557577--------778887----699-88---80884------


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHH
Q ss_conf             2444322001234676543100024--11000045643210001024776543-3-101232333430330586010000
Q gi|255764461|r  232 IDALTNYLTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSL  307 (511)
Q Consensus       232 fDa~~gY~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~  307 (511)
                                  |+.++.....++.  +-|||-.|.|.++-|---=.|.-.++ | .++-+.++.+|||+++|+|||||+
T Consensus       199 ------------WHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~~g~~~~a~yW~H~g~l~~~geKMSKSl  266 (384)
T PRK12418        199 ------------WHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSR  266 (384)
T ss_pred             ------------HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCEEEECCEECCCCC
T ss_conf             ------------30565899998759976784686256588835499999986589748788860042668886745668


Q ss_pred             CCCCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             022111000000-2211121110000247873011122211100133211022102134556531233210345558955
Q gi|255764461|r  308 GNVIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTES  386 (511)
Q Consensus       308 GN~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~  386 (511)
                      ||+|++.+++++ |+++++||+|++ .+++++++||++.+.+..+.         +.|....+..      +.  . .. 
T Consensus       267 GN~i~i~dl~~~g~~p~~~R~~lL~-~hYR~~l~fs~~~l~~A~~~---------l~r~~~a~~~------~~--~-~~-  326 (384)
T PRK12418        267 GNLVFVSRLRAAGVDPAAIRLALLA-GHYRSDREWTDAVLAEAEAR---------LARWRAATAL------PA--G-PD-  326 (384)
T ss_pred             CCEEEHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHC------CC--C-CC-
T ss_conf             8714699998638987999999970-56799768899999999999---------9999998716------67--8-86-


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6566789999999999877-5035899999999999999788654
Q gi|255764461|r  387 DESILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA  430 (511)
Q Consensus       387 D~~ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~  430 (511)
                             ...+.+++.++| |+++.+.|+..++++++.+|+|...
T Consensus       327 -------~~~~~~~~~~al~DDlNTP~Ala~l~~l~~~~n~~~~~  364 (384)
T PRK12418        327 -------AADVVARVREYLADDLDTPGALAAVDGWATDALEYGGH  364 (384)
T ss_pred             -------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -------68899999999874265589999999999999732688


No 40 
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00  E-value=7.7e-38  Score=298.75  Aligned_cols=338  Identities=19%  Similarity=0.234  Sum_probs=225.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      +-++|||.|.+|  +..||||+|+||.+|+++||++.+||+|.||   |+.||   ||+.+|.++|+++.|++++|.+.|
T Consensus        36 ~v~mYvCGpTVY--d~~HiGhaR~~v~fD~l~R~L~~~G~~V~~v~NiTDiDD---Kii~~A~~~g~~~~ela~~y~~~f  110 (411)
T TIGR03447        36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDD---PLFERAERDGVDWRELGTSQIDLF  110 (411)
T ss_pred             EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             368996588478--888622341689999999999983985589961465425---999999882989999999999999


Q ss_pred             HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH----HHHCCCCC-CCCCCHHHHCCCCCCCCCCCCC
Q ss_conf             9999980889-8867477888899999999888754310221100----01011334-3015566721112222222233
Q gi|255764461|r   81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCY----SGWYSLRD-EAYYNDDEVYKGADGQYYNAQH  154 (511)
Q Consensus        81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~----~~~y~~~~-~~~~~~~~v~~~~~~~~~~~~~  154 (511)
                      .++|++|||. .|.+.|.+  +|...+.++.++|.++|++|+.+.    .+||+... ..|        |.   ......
T Consensus       111 ~~d~~~Lni~~p~~~praT--e~I~~ii~~I~~Li~kG~AY~~~~~~~gdVYFdv~~~~~y--------G~---Ls~~~~  177 (411)
T TIGR03447       111 REDMEALRVLPPRDYIGAV--ESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQF--------GY---ESGYDR  177 (411)
T ss_pred             HHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCHHHH--------CC---CCCCCH
T ss_conf             9999974999998776743--4799999999999868967982798777579872540110--------65---225799


Q ss_pred             CCE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             200-0034544344666444443444333321000676545775410345675323433377765786422214646024
Q gi|255764461|r  155 NPV-QWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWID  233 (511)
Q Consensus       155 ~p~-~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfD  233 (511)
                      ..+ +...+..     ....+.   -.+...+|.+++..+        .|-+-|    +.+ ||   +|.||        
T Consensus       178 ~~~~~~~~~~~-----~~~~~~---~Kr~p~DFaLWK~~k--------~gep~W----~SP-WG---~GRPG--------  225 (411)
T TIGR03447       178 ATMLELFAERG-----GDPDRP---GKRDPLDALLWRAAR--------EGEPSW----DSP-FG---PGRPG--------  225 (411)
T ss_pred             HHHHHHHHHCC-----CCCCCC---CCCCHHHHHHHCCCC--------CCCCCC----CCC-CC---CCCCC--------
T ss_conf             99987751114-----774200---246735677714788--------888876----699-88---86883--------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHHCC
Q ss_conf             44322001234676543100024--11000045643210001024776543-3-10123233343033058601000002
Q gi|255764461|r  234 ALTNYLTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSLGN  309 (511)
Q Consensus       234 a~~gY~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~GN  309 (511)
                                |+.++.....++.  .-|||-.|.|.++-|---=.|.-.++ | .++-+.++.+|||+++|+|||||+||
T Consensus       226 ----------WHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~~g~~~~a~yWmH~g~l~~~geKMSKSlGN  295 (411)
T TIGR03447       226 ----------WHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGN  295 (411)
T ss_pred             ----------HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHECCEEEECCEECCCCCCC
T ss_conf             ----------7799999999875997578788603578885309999998668873766765300231287055666887


Q ss_pred             CCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             2111000000-221112111000024787301112221110013321102210213455653123321034555895565
Q gi|255764461|r  310 VIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDE  388 (511)
Q Consensus       310 ~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~  388 (511)
                      ++++.+++++ |.+.++||+|++ ++++++++||++.+.+.-+.         +.|..+.+..     .+.     .   
T Consensus       296 ~~ti~dl~~~g~~p~~iR~~lL~-~HYRspl~fs~~~L~~A~~~---------l~r~~~a~~~-----~~~-----~---  352 (411)
T TIGR03447       296 LVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEAEAR---------LARWRAALAA-----TDA-----P---  352 (411)
T ss_pred             EEEHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHC-----CCC-----C---
T ss_conf             25799998649989999999971-44899768898999999999---------9999998726-----677-----5---


Q ss_pred             HHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             66789999999999877-50358999999999999997886
Q gi|255764461|r  389 SILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYF  428 (511)
Q Consensus       389 ~ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi  428 (511)
                          ....+++++.++| ++++...|+..|+++++.+|+..
T Consensus       353 ----~~~~~~~~~~~Al~DDlNTp~Ala~l~~~~~~~n~~~  389 (411)
T TIGR03447       353 ----DATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSG  389 (411)
T ss_pred             ----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             ----2267999999998601672999999999999998436


No 41 
>KOG2007 consensus
Probab=100.00  E-value=1.2e-33  Score=267.69  Aligned_cols=359  Identities=22%  Similarity=0.269  Sum_probs=243.9

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEECCC---CCCCCHHHHHHHHH--CCCCHHHHHH---
Q ss_conf             881799788899998832224789789999999988-58980362364---37022799999998--3999899999---
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHR-LDGLDVLFTTG---TDEHGQKIAKAAQN--AGVTTKVFVD---   74 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r-~~G~~v~~~~g---~D~hg~~i~~~A~~--~g~~p~e~~~---   74 (511)
                      +-+.|+|.|..|  ..-|||||++||.+||+.|+++ .-||+|.||.+   .||   +|+.+|.+  .+..|..+.+   
T Consensus        55 ~v~wY~CGpTvY--D~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD---KII~RAr~~~m~e~~~~l~~~F~  129 (586)
T KOG2007          55 KVTWYICGPTVY--DSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD---KIIKRARKEEMGEKPLSLSERFC  129 (586)
T ss_pred             EEEEEEECCCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             578997068013--4122101466622999999999972863699943552048---99987655230234121899888


Q ss_pred             HHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf             999999999998088-9886747788889999999988875431022110001011334301556672111222222223
Q gi|255764461|r   75 QNSRNFRDMADVLDI-SYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQ  153 (511)
Q Consensus        75 ~~~~~~~~~~~~~~i-~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~  153 (511)
                      .|.++|.++|.+|++ .+|..+|.+  +|...+..+++++.++|+.|.....+||+...-..... .+.    |+. +  
T Consensus       130 ~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~Yg-KL~----G~~-~--  199 (586)
T KOG2007         130 YYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYG-KLV----GQR-K--  199 (586)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHH--HCHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCHHH-HHC----CCH-H--
T ss_conf             8899999899980889985301454--24478999999998478536527808986444654135-431----715-3--


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             32000034544344666444443444333321000676545775410345675323433377765786422214646024
Q gi|255764461|r  154 HNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWID  233 (511)
Q Consensus       154 ~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfD  233 (511)
                          ...+.+.      ...+.-   ..+..++.+++..        +.|-+-|.    .+ ||   +|.||+-      
T Consensus       200 ----~~~~gEg------~l~ds~---KR~p~DFALWKAs--------K~gEP~We----SP-WG---~GRPGWH------  244 (586)
T KOG2007         200 ----NLQEGEG------VLSDSR---KRSPADFALWKAS--------KPGEPSWE----SP-WG---KGRPGWH------  244 (586)
T ss_pred             ----HCCCCCC------CCCCCC---CCCHHHHHHHHHC--------CCCCCCCC----CC-CC---CCCCCCE------
T ss_conf             ----2346767------544346---7880245666404--------89998887----98-88---9999745------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCC--CCHHCCCCCCCCHHCCHHHHHHHHH--HHHCCCCCCCCCCEEECCCCCCHHHCC
Q ss_conf             443220012346765431000241--1000045643210001024776543--310123233343033058601000002
Q gi|255764461|r  234 ALTNYLTTTGYLDNPDGSKAKFWP--ADLHVIGKDILRFHAIYWPAFLLSA--NLPLPKKVFSHGFILHKGEKISKSLGN  309 (511)
Q Consensus       234 a~~gY~s~~~~~~~~~~~~~~~w~--~d~~~~G~Dii~Fh~i~~pa~l~~~--~~~~p~~i~~~g~l~~~G~KMSKS~GN  309 (511)
                                  .++......+..  -|||-.|.|..+-|-===.|...|.  ...|-+.++.+|||+++|+|||||++|
T Consensus       245 ------------IECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkN  312 (586)
T KOG2007         245 ------------IECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKN  312 (586)
T ss_pred             ------------EEEHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCHHHHHHCC
T ss_conf             ------------64077777762655420168504337875208888888763875512578757366511104333204


Q ss_pred             CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             21110000002211121110000247873011122211100133211022102134556531233210345558955656
Q gi|255764461|r  310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDES  389 (511)
Q Consensus       310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~  389 (511)
                      +|+.+|++++|+|+++|+++++ ..+.+++|||...+....  .|...+.||+.-+..+ .+   +..+ ...+.+.+..
T Consensus       313 FiTIke~Lk~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~--q~e~~~~~ff~~~~al-~~---~~~~-~~~~~~~e~~  384 (586)
T KOG2007         313 FITIKEALKKYSPRQLRLAFLL-HQWRSPLDYSDSTMEQAL--QLEKSLNNFFLDVKAL-LR---GAKP-FEKLSEKEAE  384 (586)
T ss_pred             CEEHHHHHHHCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHH-HH---CCCH-HHCCCHHHHH
T ss_conf             1439999976398999999998-775676784388999999--9999999999999999-82---5420-2103858999


Q ss_pred             HHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             6789999999999877-503589999999999999978865418
Q gi|255764461|r  390 ILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDAQK  432 (511)
Q Consensus       390 ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~~~  432 (511)
                      +...+......+..++ ++++.+.+++.+.++++.+|.||....
T Consensus       385 l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~  428 (586)
T KOG2007         385 LLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG  428 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99860037899999987424518899999998734338888731


No 42 
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS).  This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.96  E-value=3.6e-29  Score=234.69  Aligned_cols=189  Identities=26%  Similarity=0.360  Sum_probs=149.7

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             88179978889999883222478978999999998858980362364---370227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG---TDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g---~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      +-++|+|.|.+|  +.+||||+|+||.+|+++||++..|++|.||..   -||   ||..+|.++|+++.|++++|.++|
T Consensus        20 ~V~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDD---KII~~A~~~~~~~~ela~~y~~~f   94 (213)
T cd00672          20 LVRMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDD---KIIKRAREEGLSIKEVAEYYTAEF   94 (213)
T ss_pred             EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             788997899688--998765342576899999999963993589997267518---999999983999999999999999


Q ss_pred             HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC
Q ss_conf             9999980889-886747788889999999988875431022110001011334301556672111222222223320000
Q gi|255764461|r   81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW  159 (511)
Q Consensus        81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~  159 (511)
                      .+++++|||. +|.+.|.                                                              
T Consensus        95 ~~d~~~Lni~~p~~~Pra--------------------------------------------------------------  112 (213)
T cd00672          95 FEDMKALNVLPPDVYPRV--------------------------------------------------------------  112 (213)
T ss_pred             HHHHHHHCCCCCCCCCCE--------------------------------------------------------------
T ss_conf             999998289999813545--------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             34544344666444443444333321000676545775410345675323433377765786422214646024443220
Q gi|255764461|r  160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYL  239 (511)
Q Consensus       160 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~  239 (511)
                                                                     |-|         .-             +.+   
T Consensus       113 -----------------------------------------------WHi---------EC-------------saM---  120 (213)
T cd00672         113 -----------------------------------------------WHI---------EC-------------SAM---  120 (213)
T ss_pred             -----------------------------------------------EEE---------EC-------------HHH---
T ss_conf             -----------------------------------------------201---------45-------------999---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHH
Q ss_conf             0123467654310002411000045643210001024776543-310123233343033058601000002211100000
Q gi|255764461|r  240 TTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIE  318 (511)
Q Consensus       240 s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~  318 (511)
                       +.+++.+         +-|+|-.|.|.++-|---=-|.-.++ |.++-+.++.+|||+++|+|||||+||++++.|+++
T Consensus       121 -~~~~lg~---------~~DIH~GG~DL~FPHHeNE~AQs~a~~~~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~  190 (213)
T cd00672         121 -SMKYLGE---------TFDIHGGGVDLIFPHHENEIAQSEAAFGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK  190 (213)
T ss_pred             -HHHHHCC---------CEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHCCCEECCCCCCEEEHHHHHH
T ss_conf             -8988289---------625634763565899704999988865899601000345787275640345787526999984


Q ss_pred             HCCCCCCCHHHEEECCCCCCCEEC
Q ss_conf             022111211100002478730111
Q gi|255764461|r  319 EVGVDALRYFLVREIACGKDGFYD  342 (511)
Q Consensus       319 ~~g~D~lR~~l~~~~~~~~D~~Fs  342 (511)
                      +|+++++||+|++ +++++.++||
T Consensus       191 ~~~~~~~R~~lls-~hYR~~l~fs  213 (213)
T cd00672         191 KYDPEVLRLALLS-SHYRSPLDYS  213 (213)
T ss_pred             CCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf             3999999999982-7378987899


No 43 
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.93  E-value=4.8e-25  Score=204.19  Aligned_cols=128  Identities=41%  Similarity=0.774  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01332110221021345565312332103455589556566789999999999877503589999999999999978865
Q gi|255764461|r  350 VNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFD  429 (511)
Q Consensus       350 ~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~  429 (511)
                      +|+||++++||+++|+.+|+.++++|.+|..+..++.|.++++++.+..+++.++||++++++|++.+|++++.+|+|++
T Consensus         1 ~N~~L~~~~GNLv~Rv~~~~~k~~~~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~   80 (129)
T cd07957           1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID   80 (129)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98888879977999999999982799799987776413999999999999999999852499999999999999999999


Q ss_pred             HHCCCHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             4187012169-99999999999999999999985432248999999984
Q gi|255764461|r  430 AQKPWELKKT-NPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL  477 (511)
Q Consensus       430 ~~~PW~l~k~-d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L  477 (511)
                      .++||+++|+ ++++++++|+++++++|.+++||+||||++|++||++|
T Consensus        81 ~~~PW~l~K~~~~~~~~~vl~~~l~~~~~l~ilL~P~mP~~s~~i~~~L  129 (129)
T cd07957          81 ETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL  129 (129)
T ss_pred             HCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf             6587988823029999999999999999999999757018999999719


No 44 
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.91  E-value=9.6e-22  Score=179.79  Aligned_cols=332  Identities=16%  Similarity=0.202  Sum_probs=202.1

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH-------------------
Q ss_conf             8888179978889999883222478978999999998858980362364370227999999-------------------
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA-------------------   62 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A-------------------   62 (511)
                      .+.+++.|--.=|-|+||||+||+|+.+.+|.++|-++..||+|.=.---.|.|..|..-+                   
T Consensus       110 ~~~k~v~vEfvSaNPtgpLHVGH~R~aiiGdsLariL~~~G~~V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~  189 (562)
T PRK12451        110 GCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRE  189 (562)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf             89987999852899998862422462799999999999869859999974773089999999999854401124675789


Q ss_pred             --------HH---CC----------------CCHH------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             --------98---39----------------9989------999999999999999808898867477888899999999
Q gi|255764461|r   63 --------QN---AG----------------VTTK------VFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL  109 (511)
Q Consensus        63 --------~~---~g----------------~~p~------e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~  109 (511)
                              .+   .+                .+++      .+.+...+.++++++.+||.||.|.  .+..+...+.++
T Consensus       190 l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~--~Es~~~~~~~~~  267 (562)
T PRK12451        190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNNLMEDF  267 (562)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE--CHHHHHHHHHHH
T ss_conf             999999999865048006899999999876689999999999999999999999999297201452--324451247899


Q ss_pred             HHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             88875431022110001011334301556672111222222223320000345443446664444434443333210006
Q gi|255764461|r  110 WKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP  189 (511)
Q Consensus       110 ~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p  189 (511)
                      +..|.++|++|+.+...+.+.                                       +++                 
T Consensus       268 i~~L~~~g~~~e~dGA~~~~~---------------------------------------~~~-----------------  291 (562)
T PRK12451        268 IGILEEHDLLEESEGALVVNL---------------------------------------EEE-----------------  291 (562)
T ss_pred             HHHHHHCCCEEECCCCEECCC---------------------------------------CHH-----------------
T ss_conf             999997797894799743587---------------------------------------131-----------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             76545775410345675323433377765786422214646024443220012346765431000241100004564321
Q gi|255764461|r  190 IERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR  269 (511)
Q Consensus       190 ~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~  269 (511)
                                   |.+|.-|-|..   |.        +.|..-|  |+|   ..+-.+..+ +    -.-+.+.|-|.  
T Consensus       292 -------------g~~~~vl~ksD---Gt--------~tY~t~D--iA~---~~~k~~~~~-~----d~~I~V~gadh--  335 (562)
T PRK12451        292 -------------GMPPCLIRKSD---GA--------TIYATRD--LTA---ALYRQNTFG-F----DKALYVVGPEQ--  335 (562)
T ss_pred             -------------CCCCEEEECCC---CC--------CEEECCH--HHH---HHHHHHHCC-C----CEEEEEECCCH--
T ss_conf             -------------27863899189---97--------2131664--789---999987309-9----75899956747--


Q ss_pred             HHCCHHH---HHHHHHHHHCCCCC--CCCCCEEECCCCCCHHHCCCCCCCCHHHH-------------------------
Q ss_conf             0001024---77654331012323--33430330586010000022111000000-------------------------
Q gi|255764461|r  270 FHAIYWP---AFLLSANLPLPKKV--FSHGFILHKGEKISKSLGNVIDPIEVIEE-------------------------  319 (511)
Q Consensus       270 Fh~i~~p---a~l~~~~~~~p~~i--~~~g~l~~~G~KMSKS~GN~I~~~e~l~~-------------------------  319 (511)
                        ..+++   +.+.++|+..++.+  +..|+|..+|+||||.+||+|+++|++++                         
T Consensus       336 --~~~~~rv~a~l~~lg~~~~~~~~hv~~~~v~~~g~kMStR~G~~v~l~dll~e~~~~a~~~~~~r~~~~~~~~~ia~~  413 (562)
T PRK12451        336 --SLHFNQFFTVLKKLGYTWVDGMEHVPFGFILKDGKKMSTRKGRVILLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQ  413 (562)
T ss_pred             --HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             --679999999999749975455068988998748863020578756899999999999999987527771328999998


Q ss_pred             CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCH-HHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             22111211100002478730111222111001332110221021-3455653123-321034555895565667899999
Q gi|255764461|r  320 VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVS-RSVSMILKDY-DGMIPTPGAFTESDESILSVCSRV  397 (511)
Q Consensus       320 ~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~-R~~~f~~k~~-~g~ip~~~~~~~~D~~ll~~l~~~  397 (511)
                      .|.|++||++++. ...++.+|+++.+...-++  -+.|...++ |+.+.+.|.- +..........+.+..++..+...
T Consensus       414 VG~~Airy~~L~~-~~~~~~~FD~d~~~~~~~~--~~PYiQYAhARi~SIlrk~~~~~~~~~~~l~~~~e~~Li~~L~~f  490 (562)
T PRK12451        414 VGVGAVIFHDLKN-ERMHNIEFSLENMLKFEGE--TGPYVQYTHARACSILRKESVEFETCTFALKDDHSWSVVKLLNKF  490 (562)
T ss_pred             HCCCHHHHHHHHC-CCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             5311301344431-6787776789999742578--873699999999999974457755433446997999999999988


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999877503589999999999999978865418
Q gi|255764461|r  398 LQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQK  432 (511)
Q Consensus       398 ~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~  432 (511)
                      +..+..+.++++.+..+..+.++++..|.|.+..+
T Consensus       491 p~vv~~aa~~~~Ph~l~~Yl~~LA~~Fh~fY~~~~  525 (562)
T PRK12451        491 PQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR  525 (562)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999849937999999999999999980687


No 45 
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.90  E-value=3e-21  Score=176.14  Aligned_cols=335  Identities=23%  Similarity=0.317  Sum_probs=201.0

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH--------------------
Q ss_conf             888179978889999883222478978999999998858980362364370227999999--------------------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA--------------------   62 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A--------------------   62 (511)
                      +++|++|--.=|-|+||||+||+|+.+.+|.++|-++..||+|.=.---.|.|+.+..-+                    
T Consensus       116 ~~~kv~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~l~~~Y  195 (570)
T PRK01611        116 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLAASLELEEAAAKGLSDLERRY  195 (570)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             99779998448999998623358878999999999998399079999978742799999999999604888706679999


Q ss_pred             ---H------------------HCCCCH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHHHHHH
Q ss_conf             ---9------------------839998------99999999999999998088988674778888999-9999988875
Q gi|255764461|r   63 ---Q------------------NAGVTT------KVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHD-TCRILWKKIS  114 (511)
Q Consensus        63 ---~------------------~~g~~p------~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~-~~~~~~~~l~  114 (511)
                         .                  +++-++      +..++...+.++++++++||.||.|..- +..+.. .+..++..|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~l~~l~I~fD~~~~E-s~~~~~~~i~~v~~~L~  274 (570)
T PRK01611        196 REAKKEPDEDPEEYAGEYIVKLAAPGDEELEELWRKAVDISLDEIKEDLDRLGVKFDVFFSE-SSLYNDGKVEEVVEDLK  274 (570)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHCCCHHHHHHHHH
T ss_conf             99850346585455789999987179888999999999999999999999748764421266-88985774499999998


Q ss_pred             HHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             43102211000101133430155667211122222222332000034544344666444443444333321000676545
Q gi|255764461|r  115 DKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRN  194 (511)
Q Consensus       115 ~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~  194 (511)
                      ++|++|+.+...+                                       ++++++.+.                   
T Consensus       275 ~~~~~~e~dGa~~---------------------------------------~~~~~~g~d-------------------  296 (570)
T PRK01611        275 EKGLLYESDGALW---------------------------------------VRLTEFGDD-------------------  296 (570)
T ss_pred             HCCCEEECCCCEE---------------------------------------EECHHCCCC-------------------
T ss_conf             6795893189689---------------------------------------942110677-------------------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-CHHCC
Q ss_conf             77541034567532343337776578642221464602444322001234676543100024110000456432-10001
Q gi|255764461|r  195 EVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDIL-RFHAI  273 (511)
Q Consensus       195 ~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii-~Fh~i  273 (511)
                               .+|+-+-|..   |.+        .|.=-|  |+|   ..+-.+ .+ +.    .-+.+.|-|.. +|..+
T Consensus       297 ---------~~~~vl~ksD---Gt~--------~Y~t~D--iAy---~~~K~~-~~-~d----~~I~V~g~dq~~hf~~l  345 (570)
T PRK01611        297 ---------EKDRVLQKSD---GTY--------TYFTTD--IAY---HLYKFE-RG-FD----RVIYVVGADHHGHFKRL  345 (570)
T ss_pred             ---------CCCEEEEECC---CCC--------EECHHH--HHH---HHHHHH-HC-CC----EEEEEECCCHHHHHHHH
T ss_conf             ---------7784899159---960--------001468--999---999985-17-88----38999457588899999


Q ss_pred             HHHHHHHHHHHHCCC-CCCCCCCE-E---ECCCCCCHHHCCCCCCCCHHHH----------------------CCCCCCC
Q ss_conf             024776543310123-23334303-3---0586010000022111000000----------------------2211121
Q gi|255764461|r  274 YWPAFLLSANLPLPK-KVFSHGFI-L---HKGEKISKSLGNVIDPIEVIEE----------------------VGVDALR  326 (511)
Q Consensus       274 ~~pa~l~~~~~~~p~-~i~~~g~l-~---~~G~KMSKS~GN~I~~~e~l~~----------------------~g~D~lR  326 (511)
                       + +.+..+|+.+.+ .++.|.++ +   .+|.||||.+||+|+++|++++                      .|.|++|
T Consensus       346 -~-~~l~~lG~~~~~~~~l~h~~~~lv~~~~~~kMStR~G~~v~L~dlldea~~~a~~~~~~~~e~~~~ia~~Vg~~Air  423 (570)
T PRK01611        346 -K-AALKALGYDPEKLEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVERARELVEESEEEKEEIAKAVGIDAVR  423 (570)
T ss_pred             -H-HHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH
T ss_conf             -9-99998699963344799999875436867644246787458999999999999987633776788999763410402


Q ss_pred             HHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCCC-C--C-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             110000247873011122211100133211022102-13455653123321034-5--5-58955656678999999999
Q gi|255764461|r  327 YFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIPT-P--G-AFTESDESILSVCSRVLQEI  401 (511)
Q Consensus       327 ~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip~-~--~-~~~~~D~~ll~~l~~~~~~v  401 (511)
                      |++++ ....++.+|+|+.+...-..  -+.|...+ .|+.+.+.|.-...... .  . ..++.+..++..+...+..+
T Consensus       424 y~~L~-~~~~~~~~Fd~d~~l~~~g~--t~~YiQYa~AR~~SIlrK~~~~~~~~~~~~~~l~~~~E~~Li~~l~~fp~vv  500 (570)
T PRK01611        424 YFDLS-RSRDSDYDFDLDLALSFEGN--NPPYVQYAHARICSILRKAAEEGLAAAADLSLLTEEEELELIKKLAEFPEVV  500 (570)
T ss_pred             HHHHC-CCCCCCCEECHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             64440-68888822268998632389--8257889999999999863123454434333469989999999998879999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9877503589999999999999978865418
Q gi|255764461|r  402 RENMQNQLIHRALAQVISLVSEVDRYFDAQK  432 (511)
Q Consensus       402 ~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~  432 (511)
                      ..+.++++.+..+..+++++...|.|.+..+
T Consensus       501 ~~a~~~~~Ph~l~~YL~~La~~Fn~fY~~~~  531 (570)
T PRK01611        501 ESAAEELEPHRIANYLYELAGAFHSFYNACP  531 (570)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999968818999999999999999985198


No 46 
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88  E-value=2.2e-20  Score=169.78  Aligned_cols=345  Identities=22%  Similarity=0.277  Sum_probs=205.2

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC----------------------------CCC
Q ss_conf             8881799788899998832224789789999999988589803623643----------------------------702
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT----------------------------DEH   54 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~----------------------------D~h   54 (511)
                      +.+|++|--.=|-|+||+||||+|+.+.+|.++|-++..||+|.-.---                            |.+
T Consensus       115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~  194 (577)
T COG0018         115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY  194 (577)
T ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             99879998747999998523323536889999999998399766786678579999999999999554101377772068


Q ss_pred             -CHHH-HHH--HHH-CCC---------------CHH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             -2799-999--998-399---------------989-----999999999999999808898867477888899999999
Q gi|255764461|r   55 -GQKI-AKA--AQN-AGV---------------TTK-----VFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL  109 (511)
Q Consensus        55 -g~~i-~~~--A~~-~g~---------------~p~-----e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~  109 (511)
                       |..+ ..+  +++ .+.               .+.     .+++...+.+++++.++||+||.|..-++......+.++
T Consensus       195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v  274 (577)
T COG0018         195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV  274 (577)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCHHHH
T ss_conf             89999999999974846126788999998864775789999999999999999999929530013234265526649999


Q ss_pred             HHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             88875431022110001011334301556672111222222223320000345443446664444434443333210006
Q gi|255764461|r  110 WKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILP  189 (511)
Q Consensus       110 ~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p  189 (511)
                      ...|.++|++|+.  .|..|..                                     ++++.    ++          
T Consensus       275 v~~L~~~~~~~e~--~GA~~vd-------------------------------------l~~~~----~~----------  301 (577)
T COG0018         275 VEDLEEKGLLYED--DGALVVD-------------------------------------LLKFK----KF----------  301 (577)
T ss_pred             HHHHHHCCCEEEE--CCEEEEE-------------------------------------HHHHH----HC----------
T ss_conf             9999866977600--9958986-------------------------------------43211----11----------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             76545775410345675323433377765786422214646024443220012346765431000241100004564321
Q gi|255764461|r  190 IERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR  269 (511)
Q Consensus       190 ~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~  269 (511)
                                  +..+|.-+.|..   |.        ++|.=-|  |+|   ..|-.+  ..+    -.-+.++|-|..-
T Consensus       302 ------------gd~~~~vl~KSD---Gt--------~lY~t~D--IAy---~~~K~~--~~~----d~~IyV~gadq~~  347 (577)
T COG0018         302 ------------GDDKDRVLQKSD---GT--------YLYFTRD--IAY---HLYKFE--RGF----DKLIYVLGADQHG  347 (577)
T ss_pred             ------------CCCCCEEEEECC---CC--------EEEEHHH--HHH---HHHHHH--CCC----CEEEEEECCCCHH
T ss_conf             ------------687772899769---97--------0542538--999---999973--699----8899996786244


Q ss_pred             HHCCHHHHHHHHHHHHCCCCCCCCCC---EEE-CCCCCCHHHCCCCCCCCHHHHCC----------------------CC
Q ss_conf             00010247765433101232333430---330-58601000002211100000022----------------------11
Q gi|255764461|r  270 FHAIYWPAFLLSANLPLPKKVFSHGF---ILH-KGEKISKSLGNVIDPIEVIEEVG----------------------VD  323 (511)
Q Consensus       270 Fh~i~~pa~l~~~~~~~p~~i~~~g~---l~~-~G~KMSKS~GN~I~~~e~l~~~g----------------------~D  323 (511)
                      +-..+| +.|...|+.+++.++.|..   +.. +|.||||..|++|+.+|+++..+                      .|
T Consensus       348 ~~~ql~-~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~  426 (577)
T COG0018         348 HFKQLK-AVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGID  426 (577)
T ss_pred             HHHHHH-HHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999-9999846998656189997752577877634224886578999999998876667654321157777775240


Q ss_pred             CCCHHHEEECCCCCCCEECCCCCCCCH-HHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCC----CCC-HHHHHHHHHHHH
Q ss_conf             121110000247873011122211100-1332110221021-345565312332103455----589-556566789999
Q gi|255764461|r  324 ALRYFLVREIACGKDGFYDKDGLKKRV-NADLANGIGNLVS-RSVSMILKDYDGMIPTPG----AFT-ESDESILSVCSR  396 (511)
Q Consensus       324 ~lR~~l~~~~~~~~D~~Fs~~~~~~~~-n~~L~~~lgN~~~-R~~~f~~k~~~g~ip~~~----~~~-~~D~~ll~~l~~  396 (511)
                      ++||++++. ...++..|+|+.+..-- |+   ..|...++ |+.+...|.-....+...    .++ ..+..|+.++.+
T Consensus       427 Avry~~l~~-~~~~~~~Fd~d~~lsfegNt---~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~  502 (577)
T COG0018         427 AVRYADLSR-SRDKDYVFDWDKALSFEGNT---APYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLE  502 (577)
T ss_pred             HHHHHHHHC-CCCCCCEEEHHHHHHCCCCC---CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHH
T ss_conf             678998862-89999475399997445997---21599999999999985444345533222101068279999999998


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH
Q ss_conf             999999877503589999999999999978865418701216999
Q gi|255764461|r  397 VLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP  441 (511)
Q Consensus       397 ~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~  441 (511)
                      .+.-+.++.++++.+..+..+++++...|+|.+...  .+..++.
T Consensus       503 fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~--Vl~~~~~  545 (577)
T COG0018         503 FPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP--VLGAENE  545 (577)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCH
T ss_conf             499999999856955999999999999999985087--7789957


No 47 
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.83  E-value=1e-20  Score=172.11  Aligned_cols=140  Identities=34%  Similarity=0.540  Sum_probs=119.7

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r    8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL   87 (511)
Q Consensus         8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~   87 (511)
                      +||.+.|||||+|||||+++++..|+++|+.     +|.++.++||||++++..|.+.+..++++++++.++++++++  
T Consensus         1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--   73 (142)
T cd00802           1 VITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKEGKLPKEEVEENIEEIKEDLK--   73 (142)
T ss_pred             CEECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCE--
T ss_conf             9141488989964188999999999999981-----998999865799200116788444889999999999998652--


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf             88988674778888999999998887543102211000101133430155667211122222222332000034544344
Q gi|255764461|r   88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFF  167 (511)
Q Consensus        88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~  167 (511)
                                                                                                      
T Consensus        74 --------------------------------------------------------------------------------   73 (142)
T cd00802          74 --------------------------------------------------------------------------------   73 (142)
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             66644444344433332100067654577541034567532343337776578642221464602444322001234676
Q gi|255764461|r  168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN  247 (511)
Q Consensus       168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~  247 (511)
                                                                                    +|||+.+.+++...+.. 
T Consensus        74 --------------------------------------------------------------y~~~~~~~~~~~~~~~~-   90 (142)
T cd00802          74 --------------------------------------------------------------YWFDSAADDLLLLGYPF-   90 (142)
T ss_pred             --------------------------------------------------------------ECCCEEECHHHHCCCCC-
T ss_conf             --------------------------------------------------------------63401643487546678-


Q ss_pred             CCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHH-HHCCCCCCCCCCEEEC-CCCCCHH
Q ss_conf             543100024110000456432100010247765433-1012323334303305-8601000
Q gi|255764461|r  248 PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSAN-LPLPKKVFSHGFILHK-GEKISKS  306 (511)
Q Consensus       248 ~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~-~~~p~~i~~~g~l~~~-G~KMSKS  306 (511)
                              +|.++++.|+|++. |+.++++++.+.+ ..++..++++|+++.+ |+|||||
T Consensus        91 --------~~~~~~~~G~D~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~KmSKS  142 (142)
T cd00802          91 --------YPVDLVLGGKDQIP-HLELTRDLLKALGGKFPPPEVLHHGLLLGEDGKKMSKS  142 (142)
T ss_pred             --------CCCCEEEECCCCCC-CCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf             --------87657886621014-76999999998377889986786311488699867899


No 48 
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.82  E-value=3.7e-18  Score=153.33  Aligned_cols=346  Identities=22%  Similarity=0.281  Sum_probs=199.4

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE---ECCCC------------------------CCC-
Q ss_conf             88817997888999988322247897899999999885898036---23643------------------------702-
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVL---FTTGT------------------------DEH-   54 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~---~~~g~------------------------D~h-   54 (511)
                      +.+|++|---=|-|||||||||+|+.|.+|.++|-+++.||+|.   ||-++                        .+| 
T Consensus       116 ~~~ki~~EfsSaNp~gplH~GHlR~aiIGD~L~r~l~~~G~~V~r~yyVND~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~  195 (600)
T TIGR00456       116 ESKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQIGLLVLGVEKFGNEKETAVKKPDHG  195 (600)
T ss_pred             CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHCCCCCCCCC
T ss_conf             87079998765888976110000257778899999987597079852005428999999999998512132026687420


Q ss_pred             --CH-HHHHHHHH-CCCC------HHH------------------------HHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             --27-99999998-3999------899------------------------99999999999999808898867477888
Q gi|255764461|r   55 --GQ-KIAKAAQN-AGVT------TKV------------------------FVDQNSRNFRDMADVLDISYDDFIRTTEK  100 (511)
Q Consensus        55 --g~-~i~~~A~~-~g~~------p~e------------------------~~~~~~~~~~~~~~~~~i~~D~~~rT~~~  100 (511)
                        |. +|+.+..- ++..      .++                        +++..-+.++++++.+||.+|.|.-=++-
T Consensus       196 ~~~~~y~~~~k~~~e~~~~~~~~s~~~~~~~~~~~~e~gdnNe~~~~~w~~~~~~~l~~~k~tl~~lni~~D~~~~E~E~  275 (600)
T TIGR00456       196 LEGFDYVEINKRLEENEEPINKQSLEEEARELFVKLESGDNNEKTIKLWKRLVEYALEGIKETLKRLNIHFDEFVWEGES  275 (600)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEE
T ss_conf             12358889887886177765333545789999997432444289999999999999999999998629650058854045


Q ss_pred             HHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC--CC
Q ss_conf             89999999988875-4310221100010113343015566721112222222233200003454434466644444--34
Q gi|255764461|r  101 RHHDTCRILWKKIS-DKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDK--LL  177 (511)
Q Consensus       101 ~~~~~~~~~~~~l~-~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~--l~  177 (511)
                      -....+..++..|. ++|+.++.+.                                       .+.++++.|.|.  .-
T Consensus       276 ~~~~~~~~v~e~L~k~~gl~~ed~g---------------------------------------A~~~~L~~f~d~kadG  316 (600)
T TIGR00456       276 VKNGKVPKVLEDLKKEKGLVVEDDG---------------------------------------ALWLDLTEFGDKKADG  316 (600)
T ss_pred             EECCCHHHHHHHHHHHCCCEEECCC---------------------------------------EEEEECCCCCCCCCCC
T ss_conf             7748607899986310378067473---------------------------------------4899757766621267


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--CCCCC
Q ss_conf             4433332100067654577541034567532343337776578642221464602444322001234676543--10002
Q gi|255764461|r  178 SYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDG--SKAKF  255 (511)
Q Consensus       178 ~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~--~~~~~  255 (511)
                      +                         -+|.-+.|..   |+        ++|.==|  +|      ++.+...  .+++.
T Consensus       317 ~-------------------------~k~~Vl~k~D---Gt--------~~Y~T~D--iA------yh~~k~~~~~~d~~  352 (600)
T TIGR00456       317 D-------------------------EKDRVLIKSD---GT--------YLYLTRD--IA------YHLDKLERLGFDKL  352 (600)
T ss_pred             C-------------------------CCCEEEEEEC---CC--------CCCHHHH--HH------HHHHHHHHCCCEEE
T ss_conf             6-------------------------4564788508---95--------0105989--99------99998734397289


Q ss_pred             CCCCHHCCCCCCCCHHCCHHHHHHHHHH-HHCCCCCCC--CCCEE-ECCCCCCHHHCCCCCCCCH---------------
Q ss_conf             4110000456432100010247765433-101232333--43033-0586010000022111000---------------
Q gi|255764461|r  256 WPADLHVIGKDILRFHAIYWPAFLLSAN-LPLPKKVFS--HGFIL-HKGEKISKSLGNVIDPIEV---------------  316 (511)
Q Consensus       256 w~~d~~~~G~Dii~Fh~i~~pa~l~~~~-~~~p~~i~~--~g~l~-~~G~KMSKS~GN~I~~~e~---------------  316 (511)
                          +.++|-|..=+=.-+| +.+..+| ...+..+.+  +|+|. .+|+|||+.+|++|..+++               
T Consensus       353 ----i~V~gsdh~~h~~q~~-~~~e~LG~~~~~~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~e~~~RA~~~~~~~  427 (600)
T TIGR00456       353 ----IYVWGSDHKLHIAQVF-AILEKLGYLSKKKELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLDEASKRAGNVITKR  427 (600)
T ss_pred             ----EEEEECCHHHHHHHHH-HHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
T ss_conf             ----9874051888999999-99997165378861689987643257888543455660223446899999999999611


Q ss_pred             -------------HHHCCCCCCCHHHEEECCCCCCCEECCC-CCCCCHHHHHHHHHHHCC-HHHHHHHH-H-CCCCCCC-
Q ss_conf             -------------0002211121110000247873011122-211100133211022102-13455653-1-2332103-
Q gi|255764461|r  317 -------------IEEVGVDALRYFLVREIACGKDGFYDKD-GLKKRVNADLANGIGNLV-SRSVSMIL-K-DYDGMIP-  378 (511)
Q Consensus       317 -------------l~~~g~D~lR~~l~~~~~~~~D~~Fs~~-~~~~~~n~~L~~~lgN~~-~R~~~f~~-k-~~~g~ip-  378 (511)
                                   ++..|.||+||++++.. ...|..|+|+ ...+-- ++ -..|...+ +|+.++.. + .+++... 
T Consensus       428 ~~~~~~~e~~e~~a~~vG~gAvry~~l~~~-~~~~~~Fd~d~~~L~f~-~n-~~pY~QYAhaR~~Silr~~~~~~~~~~~  504 (600)
T TIGR00456       428 NTDLEQDEAEEKVADAVGIGAVRYADLSKN-RETHYVFDWDTAMLSFE-GN-TAPYIQYAHARICSILRKKAEIDGEKLI  504 (600)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEECCCHHHCCC-CC-CCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             013522203789999973679999999727-89881550120111157-88-7432588899999987631023313455


Q ss_pred             -C-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCH
Q ss_conf             -4-5558-9556566789999999999877503589999999999999978865418701216999
Q gi|255764461|r  379 -T-PGAF-TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP  441 (511)
Q Consensus       379 -~-~~~~-~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~  441 (511)
                       . ...+ ++.+..|+..+.+.++-+.++++..+.+..++.+++++...|.|-+..+  .+...+.
T Consensus       505 ~~~~~~~~~~~E~~L~~~L~~fp~~~~~~~~~~~p~~l~~Yly~LA~~F~sfY~~~~--v~~~~~~  568 (600)
T TIGR00456       505 ADDFLLLKEEKEKELLKLLLQFPEVIEEAAEEREPHVLTNYLYELAKLFSSFYKACP--VLDAENE  568 (600)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCH
T ss_conf             320003688889999999856489999999854718889999999776423664177--8898626


No 49 
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.75  E-value=2.2e-16  Score=140.25  Aligned_cols=256  Identities=19%  Similarity=0.227  Sum_probs=138.5

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCC-CH-------HH-HHHHHHCCCC-----
Q ss_conf             88179978889999883222478978999999998858-9803623643702-27-------99-9999983999-----
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLD-GLDVLFTTGTDEH-GQ-------KI-AKAAQNAGVT-----   68 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~-G~~v~~~~g~D~h-g~-------~i-~~~A~~~g~~-----   68 (511)
                      +..+++-|+ -.|+|.+||||+|..+.+|+++|-+|.+ |++|.+++.+|+. |+       |- +.-++-.|.+     
T Consensus        28 ~~~vv~~tG-~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~iP  106 (513)
T PRK00750         28 KGEVLFETG-YGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSVP  106 (513)
T ss_pred             CCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             873999368-6899886230452266699999999984599668999851776543468899984999987499664079


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH----H----------HHHHHHHHHHHHHHHHCCCCCCH--HHH
Q ss_conf             -----89999999999999999808898867477888----8----------99999999888754310221100--010
Q gi|255764461|r   69 -----TKVFVDQNSRNFRDMADVLDISYDDFIRTTEK----R----------HHDTCRILWKKISDKGDIYKGCY--SGW  127 (511)
Q Consensus        69 -----p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~----~----------~~~~~~~~~~~l~~~G~iy~~~~--~~~  127 (511)
                           ...+++++.+.+.+.++.+||.++.. ++++-    .          +...+.+|+.+..  |---+.++  =..
T Consensus       107 dP~g~~~Sya~h~~~~~~~~l~~~gi~~e~~-s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~--~~~~~~~~~P~~p  183 (513)
T PRK00750        107 DPFGTHESYAEHNNARLREFLDKFGFEYEFI-SATECYKSGRFDEALLKALEKYDEIMAILLPTL--GEERQATYSPFLP  183 (513)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCEEEEEE
T ss_conf             9888757699999999999999839833997-678766448669999999985999999999843--8666787147787


Q ss_pred             CCCCCCCCCCHHHHCC---CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             1133430155667211---1222222223320000345443446664444434443333210006765457754103456
Q gi|255764461|r  128 YSLRDEAYYNDDEVYK---GADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGL  204 (511)
Q Consensus       128 y~~~~~~~~~~~~v~~---~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl  204 (511)
                      +|++|++-+.-.=+..   .....+++.||+..+.        ++.          +.        +.|   +.|    -
T Consensus       184 iC~~cGkv~~t~v~~~d~~~~~v~y~~~cG~~~~~--------~~~----------~g--------~~K---L~W----r  230 (513)
T PRK00750        184 ICPKCGKVLQVPVISVDADAGTITYDDECGHEGEV--------PVT----------GG--------HVK---LQW----K  230 (513)
T ss_pred             ECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEE--------CCC----------CC--------CCC---CCC----C
T ss_conf             61888955204689997799889998499987876--------366----------88--------543---466----2


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH---HHHH
Q ss_conf             7532343337776578642221464602444322001234676543100024110000456432100010247---7654
Q gi|255764461|r  205 KDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA---FLLS  281 (511)
Q Consensus       205 ~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa---~l~~  281 (511)
                      -||+.   |  |.                             ..        ..|+-..|||.+-    -|..   +..-
T Consensus       231 vDW~m---R--W~-----------------------------~~--------~Vd~Ep~GKDh~~----S~~~~~~I~~i  264 (513)
T PRK00750        231 VDWPM---R--WA-----------------------------AL--------GVDFEPAGKDHIS----SYDTSSRICEI  264 (513)
T ss_pred             CCCHH---H--HH-----------------------------HH--------CCCCCCCCCCCCC----CHHHHHHHHHH
T ss_conf             56554---4--11-----------------------------10--------6430346511212----07679999998


Q ss_pred             HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECC
Q ss_conf             33101232333430330-586010000022111000000221112111000024787301112
Q gi|255764461|r  282 ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDK  343 (511)
Q Consensus       282 ~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~  343 (511)
                      .|.++|-.+. -+|++. +|+|||||+||+|++.|.|+-++++++.+|+.......+.++|+.
T Consensus       265 ~g~~pP~~~~-YE~fLd~~G~KmSsSkGngit~~ewL~~~~PEsl~rfm~~~pkpaK~l~fd~  326 (513)
T PRK00750        265 LGGEPPEGFM-YELFLDGKGQKISKSKGNGISIEDWLEYAPPESLARFMYARPKPAKRLYFDV  326 (513)
T ss_pred             HCCCCCCCCC-EEEEECCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             3899999987-2279837986630568972389999975599999999971889884015656


No 50 
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.71  E-value=4.8e-15  Score=130.30  Aligned_cols=256  Identities=21%  Similarity=0.284  Sum_probs=137.2

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CH-HH----H--HHHHH-CCC--------
Q ss_conf             81799788899998832224789789999999988589803623643702-27-99----9--99998-399--------
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH-GQ-KI----A--KAAQN-AGV--------   67 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h-g~-~i----~--~~A~~-~g~--------   67 (511)
                      ..++|-|. -.|+|.+|||+.+.-+.+|+++|-+|-+|++|.+++=+|++ |+ +|    .  ...++ .|.        
T Consensus        19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP   97 (521)
T COG1384          19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP   97 (521)
T ss_pred             CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             86898347-68988732142898989999999999748865799981487510127999998689998709964348997


Q ss_pred             --CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCH--HHHCC
Q ss_conf             --989999999999999999808898867477888--------------899999999888754310221100--01011
Q gi|255764461|r   68 --TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEK--------------RHHDTCRILWKKISDKGDIYKGCY--SGWYS  129 (511)
Q Consensus        68 --~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~--------------~~~~~~~~~~~~l~~~G~iy~~~~--~~~y~  129 (511)
                        ....+++++.+.|.+.++.+||.+..+ ++++-              +++..+++|+.+...+  -.+.++  -..+|
T Consensus        98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~-s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~--~~~e~~~P~~piC  174 (521)
T COG1384          98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV-SATELYKSGLYDEAIRIALERRDEIMEILNEYRGR--ELEEDWSPFMPIC  174 (521)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEECCCCC
T ss_conf             66533599999999999998649864998-76775644558999999986579999999985187--6667723022256


Q ss_pred             CCCCCCCCHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             3343015566721112--22222223320000345443446664444434443333210006765457754103456753
Q gi|255764461|r  130 LRDEAYYNDDEVYKGA--DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL  207 (511)
Q Consensus       130 ~~~~~~~~~~~v~~~~--~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw  207 (511)
                      ++|++-+.-.=.....  .-++-+.||+-.+                             .+...-..=+.|        
T Consensus       175 ~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~-----------------------------v~ir~g~~KL~W--------  217 (521)
T COG1384         175 EKCGRILTTPVIEWDGEGTVEYRCECGHEGE-----------------------------VDIRGGEGKLPW--------  217 (521)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCCE-----------------------------EECCCCCCCCCC--------
T ss_conf             5558703068899637844999866886104-----------------------------622336764435--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHH-HHHHH-
Q ss_conf             234333777657864222146460244432200123467654310002411000045643210001---0247-76543-
Q gi|255764461|r  208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPA-FLLSA-  282 (511)
Q Consensus       208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa-~l~~~-  282 (511)
                           |++|+-.           |        ++.+              .|+-..|||    |..   .|.. -..+. 
T Consensus       218 -----RvdWp~R-----------W--------~~lg--------------Vd~EPfGKD----H~a~ggSydtg~~I~~e  255 (521)
T COG1384         218 -----RVDWPMR-----------W--------AALG--------------VDFEPFGKD----HAAAGGSYDTGKRIARE  255 (521)
T ss_pred             -----CCCCCCH-----------H--------HCCC--------------CCCCCCCCC----CCCCCCCHHHHHHHHHH
T ss_conf             -----7675001-----------0--------0008--------------310357853----13456763789999998


Q ss_pred             --HHHCCCCCCCCCCEEECC-CCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCC
Q ss_conf             --310123233343033058-601000002211100000022111211100002478730111222
Q gi|255764461|r  283 --NLPLPKKVFSHGFILHKG-EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDG  345 (511)
Q Consensus       283 --~~~~p~~i~~~g~l~~~G-~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~  345 (511)
                        |+++|..+. -+|++++| +|||||+||+|++.|.++-+.+++|||+++...|.. -.+|+.+.
T Consensus       256 i~g~~pP~~~~-YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r-~~~~d~~~  319 (521)
T COG1384         256 IFGYEPPVPFV-YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNR-HIDFDFDL  319 (521)
T ss_pred             HCCCCCCCCCC-EEEEEECCCCCCCCCCCCEECHHHHHHHCCHHHEEEEEEECCCCC-CEECCCCC
T ss_conf             64999997775-588985488665568785785999987539847332354058874-43317887


No 51 
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=99.70  E-value=6.7e-17  Score=143.98  Aligned_cols=263  Identities=19%  Similarity=0.219  Sum_probs=140.3

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH--HHH-------HHHHHCCCC------
Q ss_conf             88179978889999883222478978999999998858980362364370227--999-------999983999------
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ--KIA-------KAAQNAGVT------   68 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~--~i~-------~~A~~~g~~------   68 (511)
                      +.+++|-|. -.|+|.+|||++|..+.+|+++|.+|.+|.+|.+++.+|+.--  +|.       .-++-.|.+      
T Consensus        18 ~~~~v~~tG-~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IPd   96 (355)
T pfam01921        18 KGEILVETG-IGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIPD   96 (355)
T ss_pred             CCCEEEECC-CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECCC
T ss_conf             985899526-6899886421560179999999999974987699998215651013788999989998736975213479


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CH----------HHHHHHHHHHHHHHHHHCCCCCCH--HHHCC
Q ss_conf             ----899999999999999998088988674778---88----------899999999888754310221100--01011
Q gi|255764461|r   69 ----TKVFVDQNSRNFRDMADVLDISYDDFIRTT---EK----------RHHDTCRILWKKISDKGDIYKGCY--SGWYS  129 (511)
Q Consensus        69 ----p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~---~~----------~~~~~~~~~~~~l~~~G~iy~~~~--~~~y~  129 (511)
                          ...+++++.+.+.+.++.+||.+..++.|.   +-          ++...+.+|+.+...+.  .+.++  -..+|
T Consensus        97 P~g~~~Sya~h~~~~~~~~L~~~gi~~ef~s~te~Y~sG~~~~~i~~~l~~~~~I~~Il~~~~g~e--~~~~y~Pf~piC  174 (355)
T pfam01921        97 PFGCHESYAEHFNAPFLEFLDRFGIEYEFISATELYKSGLYDEAILIALENRDEIMEILLPYRGEE--RQETYSPFLPIC  174 (355)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCEEEEEEEC
T ss_conf             888745599999999999999839828998678855246559999999985899999999852866--688736898885


Q ss_pred             CCCCCCCCHHHHCC----CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             33430155667211----12222222233200003454434466644444344433332100067654577541034567
Q gi|255764461|r  130 LRDEAYYNDDEVYK----GADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLK  205 (511)
Q Consensus       130 ~~~~~~~~~~~v~~----~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~  205 (511)
                      +.|++-+.- .|..    +....+-+.||+..+.                          -+...+.|   +.|    --
T Consensus       175 ~~cGrv~~t-~v~~~d~~~~~v~Y~c~cG~~~~~--------------------------~~~~g~~K---L~W----kv  220 (355)
T pfam01921       175 PKCGRVLTT-PVVEYDAEGGTITYRCECGHEGEV--------------------------DITGGNGK---LQW----KV  220 (355)
T ss_pred             CCCCCEEEE-EEEEEECCCCEEEEECCCCCEEEE--------------------------EECCCCCC---CCC----CC
T ss_conf             888937256-899996789879998699988998--------------------------41157666---787----56


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHH-H--HH-HH
Q ss_conf             53234333777657864222146460244432200123467654310002411000045643210001024-7--76-54
Q gi|255764461|r  206 DLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWP-A--FL-LS  281 (511)
Q Consensus       206 Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~p-a--~l-~~  281 (511)
                      ||+.   |  |.                             .        ...|+...|||.+--.+ -+. +  +. ..
T Consensus       221 DW~m---R--W~-----------------------------~--------lgVdfEp~GKDh~~~GG-S~~~~~~I~~~i  257 (355)
T pfam01921       221 DWAM---R--WA-----------------------------A--------LGVDFEPFGKDHAAPGG-SYDTSSRIAREI  257 (355)
T ss_pred             CCHH---E--EE-----------------------------E--------ECCEEECCCCCCCCCCC-CCHHHHHHHHHH
T ss_conf             6333---0--57-----------------------------8--------56348625743246787-622289999997


Q ss_pred             HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCC
Q ss_conf             33101232333430330-58601000002211100000022111211100002478730111222111
Q gi|255764461|r  282 ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKK  348 (511)
Q Consensus       282 ~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~  348 (511)
                      .|.++|-.+ .-+|+++ +|+|||||+||+|++.|.|+-+++++|||++++..| .+..+|+.+.+..
T Consensus       258 ~g~~pP~~~-~YE~~~~kgg~KmSsSkGn~is~~e~L~~~~pE~Lr~l~~~~~P-~~a~~l~fd~ip~  323 (355)
T pfam01921       258 LGGEPPEPF-PYELILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLMFRVKP-KKAKRLDFDVIPK  323 (355)
T ss_pred             CCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCC-CCCEEECCCHHHH
T ss_conf             099999988-65789966997104688987699999986699999999804288-8451207304466


No 52 
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.68  E-value=1.3e-16  Score=141.84  Aligned_cols=257  Identities=19%  Similarity=0.228  Sum_probs=137.7

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--------HHHHHHHHHCCCC-------
Q ss_conf             8817997888999988322247897899999999885898036236437022--------7999999983999-------
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG--------QKIAKAAQNAGVT-------   68 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg--------~~i~~~A~~~g~~-------   68 (511)
                      +.+++|-|. -.|+|.+|||++|..+.+|+++|.++.+|++|.+++.+|+.-        .| +.-++-.|.+       
T Consensus        18 k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~lRKVp~~lp-e~~~~ylg~PL~~IPdP   95 (354)
T cd00674          18 KEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDPLRKVPDNVP-ESLEQYIGMPLSSVPDP   95 (354)
T ss_pred             CCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHCCCCCCCC-HHHHHHCCCCCEECCCC
T ss_conf             985899478-7999886320550178899999999975996799998405551003755787-99998629963006897


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CH----------HHHHHHHHHHHHHHHHHCCCCCCHHH-----H
Q ss_conf             ---899999999999999998088988674778---88----------89999999988875431022110001-----0
Q gi|255764461|r   69 ---TKVFVDQNSRNFRDMADVLDISYDDFIRTT---EK----------RHHDTCRILWKKISDKGDIYKGCYSG-----W  127 (511)
Q Consensus        69 ---p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~---~~----------~~~~~~~~~~~~l~~~G~iy~~~~~~-----~  127 (511)
                         ...+++++.+.+.+.++.+||.+.....|.   +-          ++.+.+++|+.+...+     ...+.     .
T Consensus        96 ~G~~~SyaeHf~~~f~~~L~~~gi~~e~~s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~g~-----e~~~~y~P~~p  170 (354)
T cd00674          96 FGCHESYAEHFNAPFEESLDRFGIEVEFISASEMYKSGLYDEQIKRALEKRDEIMEILNEYRGR-----ELQETWYPYMP  170 (354)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE
T ss_conf             7775459999999999999984982899885660225762799999998289999999985475-----55786477764


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             11334301556672111222222223320000345443446664444434443333210006765457754103456753
Q gi|255764461|r  128 YSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL  207 (511)
Q Consensus       128 y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw  207 (511)
                      +|+.|++ +                 ..++.-.+.++..+..   +..     ..+...+.......+ +.|    --||
T Consensus       171 iC~~cGk-~-----------------~t~v~~~d~~~~~V~Y---~c~-----cG~~~~~~~~~g~gK-L~W----rvDW  219 (354)
T cd00674         171 YCEKCGK-D-----------------TTTVEEYDAEAETVRY---RCE-----CGHEGEVDIRGGGGK-LQW----RVDW  219 (354)
T ss_pred             ECCCCCC-C-----------------EEEEEEEECCCCEEEE---ECC-----CCCEEEEECCCCCCE-EEE----EECC
T ss_conf             0588881-1-----------------6768999489997999---959-----998888843788620-300----1035


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHH-H--HHHH-HH
Q ss_conf             234333777657864222146460244432200123467654310002411000045643210001024-7--7654-33
Q gi|255764461|r  208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWP-A--FLLS-AN  283 (511)
Q Consensus       208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~p-a--~l~~-~~  283 (511)
                      +.   |  |.                                     +...|+...|||.+--.. -|. +  +... .|
T Consensus       220 ~m---R--W~-------------------------------------~lgVd~Ep~GKDh~~~Gg-S~d~~~~I~~~i~g  256 (354)
T cd00674         220 AM---R--WA-------------------------------------ALGVDFEPFGKDHASSGG-SYDTSKEIAREIFG  256 (354)
T ss_pred             EE---E--EE-------------------------------------ECCEEEEECCCCCCCCCC-CHHHHHHHHHHHCC
T ss_conf             14---5--53-------------------------------------405158835742024675-25578999999709


Q ss_pred             HHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECC-CCCCCEECC
Q ss_conf             101232333430330-586010000022111000000221112111000024-787301112
Q gi|255764461|r  284 LPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA-CGKDGFYDK  343 (511)
Q Consensus       284 ~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~-~~~D~~Fs~  343 (511)
                      .++|..+. .+|+++ +|+|||||+||+|++.|.++-+++++|||+++. .| ...+++|+.
T Consensus       257 ~~pP~~~~-YE~~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~~-~p~~~k~i~fD~  316 (354)
T cd00674         257 GEPPEGVM-YEFIGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYAR-RKNPAKHIGFDL  316 (354)
T ss_pred             CCCCCCCC-EEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCC
T ss_conf             99998841-6999906998722467861289999976599999999860-998553224675


No 53 
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=99.68  E-value=6.3e-16  Score=136.81  Aligned_cols=121  Identities=18%  Similarity=0.227  Sum_probs=80.7

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH---C--------------
Q ss_conf             88817997888999988322247897899999999885898036236437022799999998---3--------------
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN---A--------------   65 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~---~--------------   65 (511)
                      +.+|++|--.=|-|+||+|+||+|+.+.+|.++|-++..||+|.=..-..|.|..|..-+.-   .              
T Consensus        17 k~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l   96 (345)
T pfam00750        17 ENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDL   96 (345)
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             99889998538999988504101527999999999998799598998768648999999999998566654556650566


Q ss_pred             -----------------------------CCCH--HHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             -----------------------------9998--9999-9999999999998088988674778888999999998887
Q gi|255764461|r   66 -----------------------------GVTT--KVFV-DQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKI  113 (511)
Q Consensus        66 -----------------------------g~~p--~e~~-~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l  113 (511)
                                                   ..++  .++. +.+.+.++++++++|+.||.|..-++-.....+.+++.+|
T Consensus        97 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~~~~~l~~l~v~fD~~~~Ese~~~~~~v~~vl~~L  176 (345)
T pfam00750        97 EDGYRGIKKDYIAEEIFAKEARNAVVLLQSGDEEFREMWVLLIFDHIKQSLNKIYDDFDVTLHEGESVYKGRMNDAVKDL  176 (345)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHH
T ss_conf             66421566888868999985899874500147999999999999999999999640537671067888445099999999


Q ss_pred             HHHHCCCCCC
Q ss_conf             5431022110
Q gi|255764461|r  114 SDKGDIYKGC  123 (511)
Q Consensus       114 ~~~G~iy~~~  123 (511)
                      .++|++|+.+
T Consensus       177 ~~~g~~~e~d  186 (345)
T pfam00750       177 KDNGLVYEND  186 (345)
T ss_pred             HHCCCEEEEC
T ss_conf             8779889748


No 54 
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.66  E-value=1.8e-15  Score=133.40  Aligned_cols=149  Identities=16%  Similarity=0.224  Sum_probs=103.1

Q ss_pred             ECCCCCCCCHHHHHHHHHHHCCHHHHHHH-H-HCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             11222111001332110221021345565-3-123321--0345558955656678999999999987750358999999
Q gi|255764461|r  341 YDKDGLKKRVNADLANGIGNLVSRSVSMI-L-KDYDGM--IPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQ  416 (511)
Q Consensus       341 Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~-~-k~~~g~--ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~  416 (511)
                      |+++++.+.++ .+++|+|| +.|.+.+- . ..++..  ......++..|+|+++++++++++++++|++|+|++|++.
T Consensus         1 F~e~~v~e~~R-~f~nklwN-a~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~   78 (183)
T cd07961           1 FSEKGVREVVR-KVLLPLWN-AYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRA   78 (183)
T ss_pred             CCHHHHHHHHH-HHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             98889999983-58999998-99999962210179954345560105588999999999999999999980119999999


Q ss_pred             HHHHH-HHHHHHHHHHCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC----CCCCCHHHHC
Q ss_conf             99999-9997886541870121699-9999999999999999999985432248999999984988----0007955510
Q gi|255764461|r  417 VISLV-SEVDRYFDAQKPWELKKTN-PDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA----DENRCFQSLD  490 (511)
Q Consensus       417 i~~l~-~~~N~yi~~~~PW~l~k~d-~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~----~~~~~~~~~~  490 (511)
                      +++|+ +.+|.|++..++ .+.+++ .+....++.++..++..+.+||||||||+||+||+.|...    .+++...+++
T Consensus        79 l~~F~~~l~~wYie~~K~-rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P  157 (183)
T cd07961          79 LLEFIDELTNWYIRRNRK-RFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWP  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf             999999998999999889-9970566388899999999999999997576402439999998602468988803200689


Q ss_pred             CC
Q ss_conf             12
Q gi|255764461|r  491 QR  492 (511)
Q Consensus       491 ~~  492 (511)
                      +.
T Consensus       158 ~~  159 (183)
T cd07961         158 EV  159 (183)
T ss_pred             CC
T ss_conf             98


No 55 
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.65  E-value=2e-15  Score=133.16  Aligned_cols=130  Identities=18%  Similarity=0.334  Sum_probs=100.8

Q ss_pred             ECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             1122211100133211022102134556531233210---3455589556566789999999999877503589999999
Q gi|255764461|r  341 YDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMI---PTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV  417 (511)
Q Consensus       341 Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~i---p~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i  417 (511)
                      ||++++...  .-+++|+||.    .+|+..+.++..   .....+.+.|+|+++++++++++++++|++|+|++|++.|
T Consensus         1 ~~e~~i~~~--~rf~nKlwN~----~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l   74 (135)
T cd07962           1 FDEKRVEGG--RNFCNKLWNA----ARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATAL   74 (135)
T ss_pred             CCHHHHHHH--HHHHHHHHHH----HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             989998999--9999999999----9999875453687546610077999999999999999999999865899999999


Q ss_pred             HHHH--HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             9999--99978865418701216999999999999999999999985432248999999984
Q gi|255764461|r  418 ISLV--SEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL  477 (511)
Q Consensus       418 ~~l~--~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L  477 (511)
                      ++|+  +.+|.|++..++ .+..++......+.+++..+++.+.++|+|||||+||+||+.|
T Consensus        75 ~~F~~~~ls~~Yie~~K~-rl~~~~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l  135 (135)
T cd07962          75 YEFFWNDFCDWYLELVKP-RLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL  135 (135)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999899998999999799-8729978999999999999999999999878799999998439


No 56 
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.56  E-value=3.5e-14  Score=123.95  Aligned_cols=135  Identities=19%  Similarity=0.258  Sum_probs=98.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHH
Q ss_conf             332110221021345565312332103-----4555895565667899999999998775035899999999999--999
Q gi|255764461|r  352 ADLANGIGNLVSRSVSMILKDYDGMIP-----TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEV  424 (511)
Q Consensus       352 ~~L~~~lgN~~~R~~~f~~k~~~g~ip-----~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~  424 (511)
                      .+...|+||    +.+|+..+.++.-+     ....+...|+|+++++++++++++++|++|+|+.|++.+.+|+  +.+
T Consensus        10 ~e~~rKiwN----t~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ls   85 (180)
T cd07960          10 AEAYRKIRN----TFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLS   85 (180)
T ss_pred             HHHHHHHHH----HHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             999999999----9999998637999433458922287989999999999999999999838999999999999402103


Q ss_pred             HHHHHHHCCCHHHC--CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCHHHHCC
Q ss_conf             78865418701216--999999999999999999999985432248999999984988--00079555101
Q gi|255764461|r  425 DRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA--DENRCFQSLDQ  491 (511)
Q Consensus       425 N~yi~~~~PW~l~k--~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~--~~~~~~~~~~~  491 (511)
                      +.|++..|+ .+..  .+..+...+.+++.+++..+..+|+|||||+||+||+.|...  .++....++++
T Consensus        86 ~~Yle~~K~-rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~  155 (180)
T cd07960          86 AFYLDIIKD-RLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPE  155 (180)
T ss_pred             HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf             599999779-7615888838999999999999999898744000453999998756689999757148999


No 57 
>pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA.
Probab=99.42  E-value=3.7e-12  Score=108.98  Aligned_cols=93  Identities=23%  Similarity=0.351  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             65667899999999998775035899999999999--9997886541870121699999999999999999999998543
Q gi|255764461|r  387 DESILSVCSRVLQEIRENMQNQLIHRALAQVISLV--SEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQA  464 (511)
Q Consensus       387 D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~--~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~P  464 (511)
                      |+|+++++++++++++++|++|+|++|++.+++|+  +.++.|++..++. +..++........+++..+++.+.++|+|
T Consensus         1 Dkwil~~l~~~i~~v~~~~e~~~f~~a~~~l~~f~~~~l~~~Yle~~K~~-l~~~~~~~~~~~~~~l~~~l~~~l~ll~P   79 (148)
T pfam08264         1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDR-LYGEDPDESKRRATTLYEVLETLLRLLAP   79 (148)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999998079999999999999999989999974052-14788067777999999999999999833


Q ss_pred             CHHHHHHHHHHHCCCC
Q ss_conf             2248999999984988
Q gi|255764461|r  465 FVPKLANKIFDILFVA  480 (511)
Q Consensus       465 i~P~~ae~i~~~Lg~~  480 (511)
                      ||||+||+||+.|+.+
T Consensus        80 ~~PfitEeiw~~~~~~   95 (148)
T pfam08264        80 FMPFITEELWQKLGLK   95 (148)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             1088899999867999


No 58 
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.41  E-value=2.2e-12  Score=110.61  Aligned_cols=116  Identities=18%  Similarity=0.370  Sum_probs=81.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             12221110013321102210213455653123321034555895565667899999999998775035899999999999
Q gi|255764461|r  342 DKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLV  421 (511)
Q Consensus       342 s~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~  421 (511)
                      |.+++....+  +++++||++.+....   . .+ .......+..|++++.+++++++++++++|+|+|+.|++.+|+|+
T Consensus         2 se~gIeg~~r--Fl~KlW~l~~~~~~~---~-~~-~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~   74 (117)
T cd07958           2 SDSGVEGAYR--FLNRVWRLVTELAEA---L-AA-PAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV   74 (117)
T ss_pred             CCCHHHHHHH--HHHHHHHHHHHHHHH---C-CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8006999999--999999999988863---1-34-556544667449999999999999999998522059999999999


Q ss_pred             HHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             99978865418701216999999999999999999999985432248999999984
Q gi|255764461|r  422 SEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL  477 (511)
Q Consensus       422 ~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L  477 (511)
                      +..+++....          .....   +..+++..+.+||+|||||+|||||+.|
T Consensus        75 N~l~~~~~~~----------~~~~~---~~~~~l~~ll~lL~P~~PHiaEElW~~L  117 (117)
T cd07958          75 NALYKYKKKD----------AQHAA---VLREALETLVLLLAPFAPHIAEELWEEL  117 (117)
T ss_pred             HHHHHHHCCC----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9998846144----------11499---9999999999998842479999998539


No 59 
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.30  E-value=3.5e-11  Score=101.76  Aligned_cols=102  Identities=24%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHCCCHHHCCCHH
Q ss_conf             345565312332103455589556566789999999999877503589999999-9999999788654187012169999
Q gi|255764461|r  364 RSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQV-ISLVSEVDRYFDAQKPWELKKTNPD  442 (511)
Q Consensus       364 R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i-~~l~~~~N~yi~~~~PW~l~k~d~~  442 (511)
                      +...++.+..+.. .+.+..+..|+|+++++++++++++++||+++|++|++.+ +++.+..++|++..+      +.  
T Consensus        15 ~~~~~~~e~~~~~-~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~~~Y~~~~~------~~--   85 (117)
T cd07959          15 RFYELAEELIETE-GELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGG------AG--   85 (117)
T ss_pred             HHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CC--
T ss_conf             9999999998625-77888977689999999999999999999878878999999999999999999845------54--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             99999999999999999985432248999999984
Q gi|255764461|r  443 RASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL  477 (511)
Q Consensus       443 ~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~L  477 (511)
                      ....++   .+++..+++||+||+||+||+||+.|
T Consensus        86 ~~~~~l---~~~l~~~~~lLaP~~PhiaEEiW~~l  117 (117)
T cd07959          86 MNKDLL---RRFIEVWTRLLAPFAPHLAEEIWHEL  117 (117)
T ss_pred             CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             149999---99999999998473348699998639


No 60 
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.29  E-value=2.1e-10  Score=96.02  Aligned_cols=268  Identities=18%  Similarity=0.199  Sum_probs=133.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998832224789789999999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      |=|+|.||||++|+.+..-.+||-.  .|.=++-+-+||.                +-.++.+.+.+.+.++.+||.+|.
T Consensus        11 PSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLRIEDTD~----------------~R~~~~~~~~I~~~L~wlgl~~DE   72 (489)
T PRK00574         11 PSPTGYLHIGNARTALFNYLFAKHN--NGKFILRIEDTDQ----------------ERNVEGGEESQLENLKWLGIDWDE   72 (489)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             8999842247899999999999964--9989998677898----------------778769999999999987988877


Q ss_pred             CCC---CC----CHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCE----E-CC
Q ss_conf             747---78----8889999999988875431022110001011334301-5566721112222222233200----0-03
Q gi|255764461|r   94 FIR---TT----EKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY-YNDDEVYKGADGQYYNAQHNPV----Q-WM  160 (511)
Q Consensus        94 ~~r---T~----~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~----~-~~  160 (511)
                      =+.   ..    ..+....=+++..+|.++|.+|..     ||...+-- .-......|..+.+.+.|.+-.    + ..
T Consensus        73 ~p~~~g~~gPY~QS~R~~~Y~~~a~~Ll~~G~AY~C-----fct~eel~~~r~~~~~~g~~~~Y~~~cr~l~~~e~~~~~  147 (489)
T PRK00574         73 GPDKGGEYGPYRQSERLDIYQKYADQLLEEGKAYYC-----FCTEEELEAEREKQEARGETPKYDGKCLGLTKEEIEEYE  147 (489)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             877788888835126899999999999974997452-----577999999899997569998787232338988899898


Q ss_pred             -CCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             -45443--446664444434443333210006765457754103456753234333777657864222146460244432
Q gi|255764461|r  161 -EEEGY--FFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTN  237 (511)
Q Consensus       161 -~~~~~--f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~g  237 (511)
                       +.+.+  =|+++.  +.         ...+...++..+. +=.+.+-|.-|=|..   |.|.-.-.. |++   |..++
T Consensus       148 ~~g~~~viRfk~p~--~~---------~~~~~D~v~G~i~-~~~~~ldD~Vi~rsD---G~PtYhla~-VVD---D~~M~  208 (489)
T PRK00574        148 AEGIPPVIRFKVPE--NG---------TYSFDDIVKGKIS-FDSSTIGDFVIVKSD---GFPTYNFAV-VVD---DHLME  208 (489)
T ss_pred             HCCCCCEEEEECCC--CC---------EEEEEEECCCCCC-CCCCCCCCEEEEECC---CCEEEEECC-CCC---CCCCC
T ss_conf             56999237653699--87---------1898642367646-575667876888148---980564121-147---51258


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCHHCC-CCC---CCCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCC-
Q ss_conf             20012346765431000241100004-564---3210001024776543310123233343033-05860100000221-
Q gi|255764461|r  238 YLTTTGYLDNPDGSKAKFWPADLHVI-GKD---ILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVI-  311 (511)
Q Consensus       238 Y~s~~~~~~~~~~~~~~~w~~d~~~~-G~D---ii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I-  311 (511)
                                           --|+| |-|   |.+-|-++|    .|+|.++|.-.. ..+++ .+|+||||.-|-.. 
T Consensus       209 ---------------------ITHVIRGedhlsnTpkqi~ly----~Alg~~~P~faH-lPLi~~~dg~KLSKR~g~~~~  262 (489)
T PRK00574        209 ---------------------ITHVIRGEDHISNTPKQIMIY----EAFGWEPPKFGH-MPLILNEDRKKLSKRDGATLQ  262 (489)
T ss_pred             ---------------------CCEEECCHHHHHHHHHHHHHH----HHHCCCCCEEEE-EEEEECCCCCCCCCCCCCHHH
T ss_conf             ---------------------764303521577639999999----982899974785-111378999816666797015


Q ss_pred             CCCCHHHH-CCCCCCCHHHEEECC--CCCCCEECCCCCCCC
Q ss_conf             11000000-221112111000024--787301112221110
Q gi|255764461|r  312 DPIEVIEE-VGVDALRYFLVREIA--CGKDGFYDKDGLKKR  349 (511)
Q Consensus       312 ~~~e~l~~-~g~D~lR~~l~~~~~--~~~D~~Fs~~~~~~~  349 (511)
                      ...++-++ |-|+++.=||+..+.  .+..--||.+++++.
T Consensus       263 sv~~yre~GylPeAl~NyLa~LGWs~~~~~Eifsl~eli~~  303 (489)
T PRK00574        263 FIEDYRELGYLPEAIFNFIALLGWSPEGEEEIFSLEELIKL  303 (489)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             79999987986669999999807999987465899999864


No 61 
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.24  E-value=1.8e-10  Score=96.47  Aligned_cols=274  Identities=18%  Similarity=0.159  Sum_probs=133.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998832224789789999999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      |-|+|.|||||||+.+....+||-  ..|.=++-+-+||.                .-.+..+.+.+.++++.+||.+|.
T Consensus         9 PSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~----------------~R~~~~~~~~i~~~L~WlGl~wDe   70 (461)
T PRK12558          9 PSPTGYIHIGNARTALFNWLFARA--HGGKFILRYDDTDV----------------ERSKQEYADAIADDLRWLGLDPDR   70 (461)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             898985327899999999999996--19989998776898----------------768879999999999987999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCE--EC----C--CCCC
Q ss_conf             747788889999999988875431022110001011334301-5566721112222222233200--00----3--4544
Q gi|255764461|r   94 FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY-YNDDEVYKGADGQYYNAQHNPV--QW----M--EEEG  164 (511)
Q Consensus        94 ~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~--~~----~--~~~~  164 (511)
                      =++  ..++...=++...+|.++|.+|..     ||...+-- ........+..+.+.+.|.+-.  +.    .  ...+
T Consensus        71 ~~~--QS~r~~~Y~~~~~~L~~~g~aY~C-----fct~eel~~~r~~~~~~~~~~~Y~~~~~~l~~~~~~~~~~~g~~p~  143 (461)
T PRK12558         71 VEY--QSKRFDRYAEAAEKLKAAGLLYAC-----YETAEELERRRKIQLARRLPPVYDRAALKLTDAEKAALEAEGRKPH  143 (461)
T ss_pred             CCH--HHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE
T ss_conf             741--643999999999999986993653-----8888999999999996699988784202299888876662479977


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             34466644444344433332100067654577541034567532343337776578642221464602444322001234
Q gi|255764461|r  165 YFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGY  244 (511)
Q Consensus       165 ~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~  244 (511)
                      +-++++........  .......+...++..+. +-.+.+.|.-|-|..   |.|.-.--. |++   |+.++       
T Consensus       144 ~r~~~~~~~~~~~~--~~~~~~~~~D~v~G~i~-~~~~~~~D~Vi~rsD---G~ptY~lA~-VVD---D~~m~-------  206 (461)
T PRK12558        144 WRFLLPNFESDPFA--TQRTEVHWDDLVRGPQT-VDLASLSDPVLVRED---GTYLYTLPS-VVD---DIDMG-------  206 (461)
T ss_pred             EEEEECCCCCCCCC--CCCCCEEEEECCCCEEE-ECCCCCCCEEEEECC---CCCEEEEEE-EEC---CCCCC-------
T ss_conf             99983542135567--76772798401463067-334345882899348---971034557-855---75578-------


Q ss_pred             CCCCCCCCCCCCCCCHHCC-CCCCC---CHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHH
Q ss_conf             6765431000241100004-56432---10001024776543310123233343033-0586010000022111000000
Q gi|255764461|r  245 LDNPDGSKAKFWPADLHVI-GKDIL---RFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEE  319 (511)
Q Consensus       245 ~~~~~~~~~~~w~~d~~~~-G~Dii---~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~  319 (511)
                                    --|+| |-|-+   +-|.+    +..++|.++|... .+.+++ .+|+|+||.-| .+...++.++
T Consensus       207 --------------IthviRg~d~l~~t~~~~~----l~~alg~~~p~~~-h~pli~~~~g~klskR~g-~~sv~~yr~~  266 (461)
T PRK12558        207 --------------VTHIIRGDDHVTNTGVQIA----LFRALGAEPPVFG-HHNLLTTASGEGLSKRTG-ALSVGSLREA  266 (461)
T ss_pred             --------------CCEEEECHHHHHHCHHHHH----HHHHHCCCCCEEE-ECCEEECCCCCCCCCCCC-CCCHHHHHHC
T ss_conf             --------------8544636858861599999----9999579998089-713456899981666689-7589999987


Q ss_pred             -CCCCCCCHHHEEECC-CCCCCEECCCCCCCC
Q ss_conf             -221112111000024-787301112221110
Q gi|255764461|r  320 -VGVDALRYFLVREIA-CGKDGFYDKDGLKKR  349 (511)
Q Consensus       320 -~g~D~lR~~l~~~~~-~~~D~~Fs~~~~~~~  349 (511)
                       |-|+++.=||+..+. .+.+-.|+.+++++.
T Consensus       267 GylPeAl~NyLalLGWs~~~~Ei~sl~eli~~  298 (461)
T PRK12558        267 GYEPMAVASLAVLLGTSENVDAAPDMAALAEH  298 (461)
T ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             99847899999984799980677648877530


No 62 
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=99.23  E-value=2e-10  Score=96.21  Aligned_cols=265  Identities=13%  Similarity=0.147  Sum_probs=132.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998832224789789999999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      |-|+|.|||||||+.+..-.+||-  ..|.=++-+-+||.                +-....+.+.+.++++.+||.+|.
T Consensus         6 PSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~----------------~R~~~~~~~~i~~~L~wlGl~wDe   67 (433)
T PRK12410          6 PSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFIIRIEDTDK----------------ERNIEGKDKEILEILNLFGISWDK   67 (433)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             797996427899999999999985--59989998787899----------------989869999999999985999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC-CCHHHHCCCCCCCCCCCCCCCE--ECC---CCCCCCC
Q ss_conf             747788889999999988875431022110001011334301-5566721112222222233200--003---4544344
Q gi|255764461|r   94 FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY-YNDDEVYKGADGQYYNAQHNPV--QWM---EEEGYFF  167 (511)
Q Consensus        94 ~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~-~~~~~v~~~~~~~~~~~~~~p~--~~~---~~~~~f~  167 (511)
                      =++  ..+..+.=++...+|.++|.+|..     ||.+.+-- .-......+..+.+.+.|.+-.  +..   ++-.|=|
T Consensus        68 ~~~--QS~R~~~Y~~~~~~L~~~g~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~c~~l~~~e~~~~~~~~~~R~  140 (433)
T PRK12410         68 LVY--QSENLKFHRQMAEKLLSEKKAFAC-----FCSEEELEAKKEKAKKQKKPYRYDGTCENLADIEVLKCEKPFVVRL  140 (433)
T ss_pred             CEE--CCCCHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
T ss_conf             831--257899999999999980996896-----5678999998888985599977887544389867974699827999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             66644444344433332100067654577541034567532343337776578642221464602444322001234676
Q gi|255764461|r  168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN  247 (511)
Q Consensus       168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~  247 (511)
                      +++.   .-..         +...++.++. +-.+.+.|.-|-|..   |.|.-.-                ++.   .+
T Consensus       141 k~p~---~~~~---------~~D~v~G~i~-~~~~~~~D~Vi~R~D---G~ptY~l----------------a~V---VD  185 (433)
T PRK12410        141 KKPN---HTMS---------FTDAIKGELS-FEPDEIDSFVILRQD---KTPTYNF----------------ACA---VD  185 (433)
T ss_pred             ECCC---CCEE---------EEECCCCEEC-CCCCCCCCEEEEECC---CCEEEEE----------------EEE---EC
T ss_conf             8799---9858---------8634475341-581105874899348---9835642----------------279---64


Q ss_pred             CCCCCCCCCCCCHHCC-CCCCCC---HHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHHHH-CC
Q ss_conf             5431000241100004-564321---0001024776543310123233343033-0586010000022111000000-22
Q gi|255764461|r  248 PDGSKAKFWPADLHVI-GKDILR---FHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEE-VG  321 (511)
Q Consensus       248 ~~~~~~~~w~~d~~~~-G~Dii~---Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l~~-~g  321 (511)
                       +..     -.--|++ |.|-+.   -|.+    +..++|.+.|-....+.+++ .+|+|+||..|. ....++.++ |-
T Consensus       186 -D~~-----m~IThViRGeDhl~nT~kQi~----l~~aLg~~~P~~~~H~pli~~~~g~kLSKR~g~-~~i~~yre~Gyl  254 (433)
T PRK12410        186 -DML-----YDISFIIRGEDHVSNTPKQIL----IREALGYNKPITYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFL  254 (433)
T ss_pred             -CCC-----CCCCEEECCHHHHHHHHHHHH----HHHHCCCCCCCEEECCCCEECCCCCCCCCCCCC-CCHHHHHHCCCC
T ss_conf             -887-----874002642859999999999----999869999852532010018999855666898-388889767987


Q ss_pred             CCCCCHHHEEECCCCCCCEECCCCCCCC
Q ss_conf             1112111000024787301112221110
Q gi|255764461|r  322 VDALRYFLVREIACGKDGFYDKDGLKKR  349 (511)
Q Consensus       322 ~D~lR~~l~~~~~~~~D~~Fs~~~~~~~  349 (511)
                      |+++.=||+..+.....--||.+++++.
T Consensus       255 PeAl~NyLalLG~~~~~Eifs~~eli~~  282 (433)
T PRK12410        255 PEAIANYLILLGNKTPKEIFTLDEAIEW  282 (433)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHE
T ss_conf             5999999998289997331468988445


No 63 
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.20  E-value=1.8e-10  Score=96.41  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=80.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32110221021345565312332103--4555895565667899999999998775035899999999999999788654
Q gi|255764461|r  353 DLANGIGNLVSRSVSMILKDYDGMIP--TPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDA  430 (511)
Q Consensus       353 ~L~~~lgN~~~R~~~f~~k~~~g~ip--~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~  430 (511)
                      .+.+|+|| ++   +|+..+.++..|  ....+++.|+|+++++++++++++++||+|+|+.|++.|++|+...|+|++.
T Consensus         9 ~F~nKLWN-a~---rF~~~~~~~~~~~~~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~dwYie~   84 (117)
T cd07375           9 AFLNRLYR-LL---SFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDE   84 (117)
T ss_pred             HHHHHHHH-HH---HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989999-99---999856887888656322776279999999899999999999278999999999999936999999


Q ss_pred             HCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             187012169999999999999999999999854322
Q gi|255764461|r  431 QKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFV  466 (511)
Q Consensus       431 ~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~  466 (511)
                      .+|. +.+++.  ...+++++..++..+..|||||.
T Consensus        85 ~K~r-~~~e~~--~~~~~~~L~~vl~~~lkLlhPFt  117 (117)
T cd07375          85 LKPA-LQTEEL--REAVLAVLRAALVVLTKLLAPFT  117 (117)
T ss_pred             HHHH-HCCCHH--HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             6563-048275--79999999999999999819999


No 64 
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.10  E-value=7.4e-09  Score=84.57  Aligned_cols=270  Identities=20%  Similarity=0.240  Sum_probs=147.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998832224789789999999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      |=|+|.||||-|||.|.--++||-  ..|.=++=|=+||.                +-.+....+.+.+.|+.|||++|.
T Consensus         8 PSPTG~LHiGg~RTAlFNyLfAr~--~~G~F~lRiEDTD~----------------eR~~~e~~~~i~e~LkWlGi~wDE   69 (513)
T TIGR00464         8 PSPTGYLHIGGARTALFNYLFARH--TGGKFILRIEDTDL----------------ERNIEEAEESILEGLKWLGISWDE   69 (513)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEEECCC----------------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             888754353368999999999986--38937998753671----------------007244689999888745867466


Q ss_pred             -------C---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC-CCC-HH-HHCCCCCCCCCCCCCCCEE--
Q ss_conf             -------7---4778888999999998887543102211000101133430-155-66-7211122222222332000--
Q gi|255764461|r   94 -------F---IRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEA-YYN-DD-EVYKGADGQYYNAQHNPVQ--  158 (511)
Q Consensus        94 -------~---~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~-~~~-~~-~v~~~~~~~~~~~~~~p~~--  158 (511)
                             |   ..|.-   ...=++...+|.++|.+|+.     ||.+.+- -+- +. +...+..+.+.++|.+--+  
T Consensus        70 s~~~gG~Y~Py~QS~R---~~~Y~~~~~~Ll~~g~AYrC-----YCs~E~LE~~Rke~~q~~~~~~PrYd~~cr~l~~~~  141 (513)
T TIGR00464        70 SVYVGGNYGPYYQSQR---LDIYKKYIKELLEEGLAYRC-----YCSKEELERLRKEEIQKANKETPRYDGRCRNLHEEE  141 (513)
T ss_pred             CCCCCCCCEEEHHHHH---HHHHHHHHHHHHHCCCCEEE-----ECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             7568986301110136---78999999999745993442-----278467889989999970885348375334787137


Q ss_pred             ---CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC------CCCCCCCC----CCCCCCCCCCC
Q ss_conf             ---0345-4434466644444344433332100067654577541034567------53234333----77765786422
Q gi|255764461|r  159 ---WMEE-EGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLK------DLSLSRKT----FDWGIKIPDDP  224 (511)
Q Consensus       159 ---~~~~-~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~------Dw~ISR~~----~~WGipiP~~~  224 (511)
                         .+.. ...-+|+-.-.+.         ...+...+|.++. |-.+.|-      |.-|-|..    --+|+|.=+--
T Consensus       142 ~~~~l~~~~~pvvRfK~P~~~---------~~~F~D~v~G~i~-~~~~~l~~dkrydD~vi~k~DenPeeafG~PTYNfA  211 (513)
T TIGR00464       142 IENKLAKGIPPVVRFKIPQEA---------EISFNDQVRGEIT-FEGSELDNDKRYDDLVILKSDENPEEAFGSPTYNFA  211 (513)
T ss_pred             HHHHHHCCCCCEEEEECCCCC---------CEEECCEEEEEEE-ECCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEE
T ss_conf             887644379966887407998---------4245050221588-558667866441561264068883221488642506


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC-CCC---CCCHHCCHHHHHHHHHHHH-CCCCCCCCCCEE-E
Q ss_conf             214646024443220012346765431000241100004-564---3210001024776543310-123233343033-0
Q gi|255764461|r  225 QYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVI-GKD---ILRFHAIYWPAFLLSANLP-LPKKVFSHGFIL-H  298 (511)
Q Consensus       225 ~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~-G~D---ii~Fh~i~~pa~l~~~~~~-~p~~i~~~g~l~-~  298 (511)
                      . |++   |.+++ |                    -|+| |-|   |.+-|    .+++.|.|.+ .|....+. +++ .
T Consensus       212 v-vvD---D~lM~-I--------------------ThViRGedHisNTPkQ----I~iy~Alg~~~iP~f~H~p-~I~~~  261 (513)
T TIGR00464       212 V-VVD---DYLMK-I--------------------THVIRGEDHISNTPKQ----ILIYKALGWKRIPTFAHLP-LILNE  261 (513)
T ss_pred             E-EEE---CCCCC-C--------------------CEEEECCHHHCCCHHH----HHHHHHCCCCCCCCEEEEE-EEECC
T ss_conf             7-885---33255-4--------------------5144120200671899----9999970889888155353-58569


Q ss_pred             CCCCCCHHHC-CCCCCCCHHHH-CCCCCCCHHHEEECCCCC-------CCEECCCCCCCC
Q ss_conf             5860100000-22111000000-221112111000024787-------301112221110
Q gi|255764461|r  299 KGEKISKSLG-NVIDPIEVIEE-VGVDALRYFLVREIACGK-------DGFYDKDGLKKR  349 (511)
Q Consensus       299 ~G~KMSKS~G-N~I~~~e~l~~-~g~D~lR~~l~~~~~~~~-------D~~Fs~~~~~~~  349 (511)
                      +|+||||.-| -+..++++.+. |=|+||==||+.-+....       .--||.+++.+.
T Consensus       262 ~gKKLSKRdg~~~~si~q~~~~GyLPEAl~Nyl~lLGW~~~~dlas~~~E~Fs~~elie~  321 (513)
T TIGR00464       262 DGKKLSKRDGKTATSIEQFKEQGYLPEALINYLALLGWSPPDDLASKDQEIFSLEELIEI  321 (513)
T ss_pred             CCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf             884001206402576899986688778999999984689652334465663677999820


No 65 
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.04  E-value=3.4e-10  Score=94.45  Aligned_cols=264  Identities=20%  Similarity=0.250  Sum_probs=138.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998832224789789999999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      |-|+|.||||+||+.+..-.+||  +..|.=++-+-+||.                +-.++.+.+.+.++++.+||.+|.
T Consensus         9 PSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtD~----------------~R~~~~~~~~i~~~l~wlgi~~de   70 (467)
T PRK01406          9 PSPTGYLHVGGARTALFNWLFAR--HHGGKFILRIEDTDL----------------ERSTPEAVDAILDGLKWLGLDWDE   70 (467)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             99998422478999999999999--729969999687998----------------878779999999999987999998


Q ss_pred             --CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC-CCCHHHHCCCCCCCCCCCCCCCEE--C---C-CCCC
Q ss_conf             --74778888999999998887543102211000101133430-155667211122222222332000--0---3-4544
Q gi|255764461|r   94 --FIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEA-YYNDDEVYKGADGQYYNAQHNPVQ--W---M-EEEG  164 (511)
Q Consensus        94 --~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~-~~~~~~v~~~~~~~~~~~~~~p~~--~---~-~~~~  164 (511)
                        |.   ..+....=+++..+|.++|.+|..     ||.+.+- -........|..+.+.+.|.+-.+  .   . +.+.
T Consensus        71 ~p~~---QS~r~~~y~~~~~~L~~~g~aY~c-----fcs~e~l~~~r~~~~~~~~~~~Y~~~~r~l~~~~~~~~~~~g~~  142 (467)
T PRK01406         71 GPYR---QSERFDRYKEVAEQLLEKGKAYYC-----YCTPEELEAMREEQLARGEPPRYDGRCRDLTPEEVAAREAEGRP  142 (467)
T ss_pred             CCEE---HHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCC
T ss_conf             8861---744899999999999984998644-----77899999869999847999888855533898788767646998


Q ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             --344666444443444333321000676545775410345675323433377765786422214646024443220012
Q gi|255764461|r  165 --YFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTT  242 (511)
Q Consensus       165 --~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~  242 (511)
                        |=|+++.  +.-.         .+...++.++. +-.+.+-|.-|-|..   |.|.-.-.. |++   |+.++     
T Consensus       143 ~viR~k~~~--~~~~---------~~~D~i~G~i~-~~~~~~~D~vi~r~d---g~pty~~a~-vvD---D~~m~-----  198 (467)
T PRK01406        143 PVIRFKVPQ--EGEI---------VWDDLVRGEIE-FSNSELDDLVILRSD---GTPTYNLAV-VVD---DHDMG-----  198 (467)
T ss_pred             CEEEEECCC--CCCE---------EEEHHHCCCCC-CCCCCCCCEEEEECC---CCCEEEECC-CCC---CCCCC-----
T ss_conf             259986688--8865---------76403046655-575556881688069---983342020-057---62368-----


Q ss_pred             CCCCCCCCCCCCCCCCCHHCC-CCCC---CCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCCCCCCCCHH
Q ss_conf             346765431000241100004-5643---210001024776543310123233343033-05860100000221110000
Q gi|255764461|r  243 GYLDNPDGSKAKFWPADLHVI-GKDI---LRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVI  317 (511)
Q Consensus       243 ~~~~~~~~~~~~~w~~d~~~~-G~Di---i~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~~~e~l  317 (511)
                                      --|+| |-|-   .+-|.+    +..++|.+.|... ++.+++ .+|+||||.-| .+...++.
T Consensus       199 ----------------it~virg~d~~~~t~~~~~----l~~~l~~~~p~~~-H~pli~~~~g~kLSKR~~-~~~i~~~~  256 (467)
T PRK01406        199 ----------------ITHVIRGEDHLSNTPRQIL----LYEALGWEVPVFA-HLPLILGEDGKKLSKRHG-ATSVMQYR  256 (467)
T ss_pred             ----------------CCEEECCCCCHHHHHHHHH----HHHHHCCCCCEEE-EEECEECCCCCCCCCCCC-CCCHHHHH
T ss_conf             ----------------8654037535888999999----9998389997167-301114899981556688-52199999


Q ss_pred             HH-CCCCCCCHHHEEECC-CCCCCEECCCCCCCC
Q ss_conf             00-221112111000024-787301112221110
Q gi|255764461|r  318 EE-VGVDALRYFLVREIA-CGKDGFYDKDGLKKR  349 (511)
Q Consensus       318 ~~-~g~D~lR~~l~~~~~-~~~D~~Fs~~~~~~~  349 (511)
                      ++ |-|+++.=||+..+. .+.+--||.+++++.
T Consensus       257 ~~GylPeAllNyLa~LGWs~~~~Eifsl~eli~~  290 (467)
T PRK01406        257 DMGYLPEALLNYLARLGWSHGDQEIFSLEELIEL  290 (467)
T ss_pred             HCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHHHH
T ss_conf             8599889999999984799984142058999973


No 66 
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.04  E-value=6.1e-10  Score=92.59  Aligned_cols=95  Identities=20%  Similarity=0.228  Sum_probs=70.1

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r    8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL   87 (511)
Q Consensus         8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~   87 (511)
                      ++|==.|-|||.||||||++.+....+||.  ..|.=++-+-+||                |+--...+.+.+.++++.|
T Consensus        10 v~tRFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WL   71 (472)
T COG0008          10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTD----------------PERETPEAEDAILEDLEWL   71 (472)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCHHHHHHHHHHHHHC
T ss_conf             489779599985426889999997999998--3997999964799----------------8878878999999999866


Q ss_pred             CCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             889886-74778888999999998887543102211
Q gi|255764461|r   88 DISYDD-FIRTTEKRHHDTCRILWKKISDKGDIYKG  122 (511)
Q Consensus        88 ~i~~D~-~~rT~~~~~~~~~~~~~~~l~~~G~iy~~  122 (511)
                      |+..|. -++  ..++...-++...+|.++|.+|..
T Consensus        72 Gl~wde~~~~--QS~r~~~Y~~~~~~Li~~G~AY~c  105 (472)
T COG0008          72 GLDWDEGPYY--QSERFDIYYEYAEKLIEKGKAYVC  105 (472)
T ss_pred             CCCCCCCEEE--HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             8888976143--642399999999999987996886


No 67 
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=99.04  E-value=3.4e-10  Score=94.42  Aligned_cols=90  Identities=20%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             89999883222478978999999998858980362364370227999999983999899999999999999998088988
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD   92 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D   92 (511)
                      .|-|||+||||||++.+....+||-  ..|.=++-+-++|.                .-...++.+.|.++++.||+.+|
T Consensus         7 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~----------------~R~~~e~~~~I~~dL~wLGl~wD   68 (314)
T pfam00749         7 APSPTGYLHIGHARTALFNYLFAKN--YNGKFILRFDDTDP----------------EREKPEYEESILEDLKWLGIKWD   68 (314)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             8898986448999999999999998--09989999687898----------------86876899999999999537899


Q ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             67-4778888999999998887543102211
Q gi|255764461|r   93 DF-IRTTEKRHHDTCRILWKKISDKGDIYKG  122 (511)
Q Consensus        93 ~~-~rT~~~~~~~~~~~~~~~l~~~G~iy~~  122 (511)
                      .= ++  ..++...-++...+|.++|.+|..
T Consensus        69 e~~~~--QS~r~~~Y~~~~~~L~~~g~aY~C   97 (314)
T pfam00749        69 EKPYY--QSDRFDIYYKYAEELIEKGLAYVC   97 (314)
T ss_pred             CCCEE--HHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             88355--202099999999999974995225


No 68 
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.01  E-value=1.6e-09  Score=89.49  Aligned_cols=282  Identities=17%  Similarity=0.170  Sum_probs=144.2

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r    8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL   87 (511)
Q Consensus         8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~   87 (511)
                      .||-=+|-|||+||||||++.+.-..+||-  ..|.=++-+-+||.           +.   +.-..++.+.+.++++.|
T Consensus       101 V~tRFaP~P~G~LHiGhar~al~N~~~Ak~--~~G~~iLR~eDTdp-----------~~---~r~~~e~~~~I~~dl~WL  164 (566)
T PRK04156        101 VVMRFAPNPSGPLHLGHARAAILNDEYAKR--YGGKFILRFEDTDP-----------RT---KRPDPEAYDMIREDLKWL  164 (566)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC-----------CC---CCCCHHHHHHHHHHHHHH
T ss_conf             899528699987618999999996999998--09989999658883-----------32---556378999999999982


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf             88988674778888999999998887543102211000101133430155667211122222222332000034544344
Q gi|255764461|r   88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFF  167 (511)
Q Consensus        88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~  167 (511)
                      |+.+|.-+++|  ++...-.+...+|.++|.+|..     +|..++ +-..     ...+..|.+...+++    ++   
T Consensus       165 G~~~de~~~qS--dr~~~y~~~a~~Li~~G~AY~c-----~c~~ee-~~~~-----r~~~~~~p~R~~~~e----~n---  224 (566)
T PRK04156        165 GVKPDEVVIQS--DRLEIYYEYARKLIEMGGAYVC-----TCDPEE-FKEL-----KDKGEACPHRDQSPE----EN---  224 (566)
T ss_pred             CCCCCCCEEHH--HHHHHHHHHHHHHHHCCCEEEC-----CCCHHH-HHHH-----HHCCCCCCCCCCCHH----HH---
T ss_conf             99978016657--6199999999999987992777-----899999-9999-----865876876689978----88---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             66644444344433332100067654577541034567532343337776578642221464602444322001234676
Q gi|255764461|r  168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN  247 (511)
Q Consensus       168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~  247 (511)
                       +..|++.+..-+......+   ..|.. ++.-...++||.+-|-.   ..|-|-..++ .-||.               
T Consensus       225 -l~~~~~m~~g~~~~g~~vl---R~K~d-~~~~n~~~rD~v~~Ri~---~~~H~r~g~k-~~v~P---------------  280 (566)
T PRK04156        225 -LELWEKMLDGEYKEGEAVV---RIKTD-LNHPNPAVRDWVAFRII---DTPHPRTGDK-YRVWP---------------  280 (566)
T ss_pred             -HHHHHHHHCCCCCCCCEEE---EEECC-CCCCCCCCCCCEEEEEC---CCCCCCCCCC-CCCCC---------------
T ss_conf             -8899876514566787699---99722-67898632235567851---6777635775-44464---------------


Q ss_pred             CCCCCCCCCCCCHHCC-------CCCC---CCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHC------CCC
Q ss_conf             5431000241100004-------5643---21000102477654331012323334303305860100000------221
Q gi|255764461|r  248 PDGSKAKFWPADLHVI-------GKDI---LRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLG------NVI  311 (511)
Q Consensus       248 ~~~~~~~~w~~d~~~~-------G~Di---i~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~G------N~I  311 (511)
                       .-+|+-  +.|-|++       |+|-   .+-|..    ++.+.|...|.. +..|-|.++|-.||||+=      +.+
T Consensus       281 -tYdfa~--~idD~l~gITHviRg~e~~~~t~~q~~----ly~~lg~~~P~~-~~fgRln~~~~vlSKrkl~~lVe~g~v  352 (566)
T PRK04156        281 -LMNFAV--AVDDHLLGVTHVLRGKDHIVNTEKQRY----IYKYFGWEYPEY-IHYGRLKIEGFVLSTSKIRKGIESGEY  352 (566)
T ss_pred             -CCCEEE--EEEHHHCCCCCEEECCCCCCCHHHHHH----HHHHCCCCCCEE-EEEEEEECCCEEEEHHHHHHHHHCCCC
T ss_conf             -424002--451110478715644301134477899----999729877505-777677515313108899999862988


Q ss_pred             CCCC--------HHH--HCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf             1100--------000--0221112111000024787301112221110013321102
Q gi|255764461|r  312 DPIE--------VIE--EVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGI  358 (511)
Q Consensus       312 ~~~e--------~l~--~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~l  358 (511)
                      +.-|        .+.  .|.++++|-|....+.-..|+.++|+.+.+. |.+.++.-
T Consensus       353 ~GWDDPRlpTl~glrRRG~~peAir~f~~~iGvsk~d~~i~~~~L~a~-nRk~lD~~  408 (566)
T PRK04156        353 SGWDDPRLPTLRALRRRGILPEAIRELIIEVGLKETDATISWENLYAL-NRKIIDPI  408 (566)
T ss_pred             CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHHHHHC
T ss_conf             888788427789998679999999999999685544532259999999-99876515


No 69 
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.90  E-value=1.1e-08  Score=83.43  Aligned_cols=96  Identities=18%  Similarity=0.255  Sum_probs=67.5

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r    8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL   87 (511)
Q Consensus         8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~   87 (511)
                      +||==-|-|+|+||||||++.+....+||-  ..|.=++=+-++|.                .-....+.+.+.++++.+
T Consensus         5 ~v~RFAPSPTG~LHlG~~rtAl~n~l~Ar~--~~G~~iLRIEDtD~----------------~R~~~~~~~~Il~~L~wl   66 (299)
T PRK05710          5 YVGRFAPSPSGPLHFGSLVSALLSYLDARA--QGGRWLVRIEDIDP----------------PREVPGAAAAILADLEWL   66 (299)
T ss_pred             CCEEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHH
T ss_conf             857179699985328999999999999998--29989998677897----------------658768999999999995


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88988674778888999999998887543102211
Q gi|255764461|r   88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG  122 (511)
Q Consensus        88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~  122 (511)
                      |+.+|-=+. ...++.+.=+++.++|.++|.+|..
T Consensus        67 Gl~wD~~~~-~QS~R~~~Y~~~~~~L~~~g~aY~C  100 (299)
T PRK05710         67 GLHWDGPVR-RQSERHDAYRAALDRLAAAGLVYPC  100 (299)
T ss_pred             CCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             688887404-8885899999999999976990250


No 70 
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers.  Archaea, cellular organelles, and some bacteria lack GlnRS.  In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=98.73  E-value=1.1e-07  Score=76.00  Aligned_cols=85  Identities=21%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             89999883222478978999999998858980362364370227999999983999899999999999999998088988
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD   92 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D   92 (511)
                      .|-|||.||||||++.+....+||-  ..|.=++-+-++|                |+....++.+.+.++++.+|+.+|
T Consensus         7 APsPtG~LHiG~ar~al~n~~~Ak~--~~G~~~LRieDTD----------------~~r~~~e~~~~I~~dL~wLGl~~d   68 (223)
T cd00418           7 APSPTGYLHIGHARAALLNYLYAKK--YGGKFILRFDDTD----------------PEREVEEAEDSILEDLKWLGIKWD   68 (223)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             8898985428999999999999998--5998999723688----------------640188899999999999189999


Q ss_pred             C-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6-747788889999999988875431
Q gi|255764461|r   93 D-FIRTTEKRHHDTCRILWKKISDKG  117 (511)
Q Consensus        93 ~-~~rT~~~~~~~~~~~~~~~l~~~G  117 (511)
                      . -++  ..++...-++...+|.++|
T Consensus        69 ~~~~~--QS~r~~~y~~~~~~Li~~G   92 (223)
T cd00418          69 EGPYY--QSDRFDIYYEYAEKLIEEG   92 (223)
T ss_pred             CCEEE--HHHHHHHHHHHHHHHHHCC
T ss_conf             86853--8758999999999997569


No 71 
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found  primarily in archaea and a few bacteria,  lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.66  E-value=2.3e-07  Score=73.54  Aligned_cols=58  Identities=29%  Similarity=0.415  Sum_probs=46.8

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf             1799788899998832224789789999999988589803623643702279999999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQ   63 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~   63 (511)
                      |++|--.=|-|+||+|+||+|+.+.+|.++|-++..|++|.=..--.|.|+.+..-+.
T Consensus         1 KI~vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~   58 (267)
T cd00671           1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGLLIL   58 (267)
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             9598855899999850310363899999999999879958898850786099999999


No 72 
>KOG1149 consensus
Probab=98.38  E-value=5.4e-05  Score=56.00  Aligned_cols=267  Identities=16%  Similarity=0.170  Sum_probs=125.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998832224789789999999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      |-|.|-||||-+|+.+.-=++||-  ..|.=++-+-+||.                +-++.--.+.+.++++.+||.+|.
T Consensus        40 PSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~nl~~DE  101 (524)
T KOG1149          40 PSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWANLDWDE  101 (524)
T ss_pred             CCCCCCEEHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             898763220138999999999873--28848998515651----------------000464477899999862999655


Q ss_pred             CCCC---CCH----HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCC---------------------CCCHHHHCCCC
Q ss_conf             7477---888----8999999998887543102211000101133430---------------------15566721112
Q gi|255764461|r   94 FIRT---TEK----RHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEA---------------------YYNDDEVYKGA  145 (511)
Q Consensus        94 ~~rT---~~~----~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~---------------------~~~~~~v~~~~  145 (511)
                      =.+.   -.|    +-.++-++..++|.+.|++|+.     ||.....                     -++++++..  
T Consensus       102 gP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC-----FCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~--  174 (524)
T KOG1149         102 GPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC-----FCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ--  174 (524)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHH--
T ss_conf             888689888524578999999999999865975674-----1588899999886531478874020213357999999--


Q ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222223320000345443446664444434443333210006765457754103456753234333777657864222
Q gi|255764461|r  146 DGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQ  225 (511)
Q Consensus       146 ~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~  225 (511)
                          ..+.|.|-      .+=|++++-...+.+            .+..++.--++.-.-|.-|-+..   |.|.-..-+
T Consensus       175 ----~lakg~pf------~iRFrl~~~~~~f~D------------LvyG~v~~~~d~~~gD~VvmKSD---gfPTYHfAn  229 (524)
T KOG1149         175 ----KLAKGTPF------TIRFRLPKESPPFTD------------LVYGKVNHNVDSNEGDPVVMKSD---GFPTYHFAN  229 (524)
T ss_pred             ----HHHCCCCE------EEEEECCCCCCCHHH------------HHHHHHHCCCCCCCCCCEEEECC---CCCCEEEEE
T ss_conf             ----97469980------699736877887024------------44202102555567981798148---986212221


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCH
Q ss_conf             14646024443220012346765431000241100004564321000102477654331012323334303305860100
Q gi|255764461|r  226 YIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKGEKISK  305 (511)
Q Consensus       226 ~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~KMSK  305 (511)
                       |++   |.++| ||..-.       -+.|-|..    +     =|+++    ..|.|.++|+-+..-=.+..+|.|.||
T Consensus       230 -VVD---Dh~M~-IsHViR-------GeEWlpST----~-----KH~lL----YkAfgW~pPkFaHlpLl~n~d~sKLSK  284 (524)
T KOG1149         230 -VVD---DHLMG-ISHVIR-------GEEWLPST----L-----KHILL----YKAFGWQPPKFAHLPLLLNPDGSKLSK  284 (524)
T ss_pred             -EEC---CHHCC-HHHEEE-------CCHHCCCC----H-----HHHHH----HHHHCCCCCCEEEEEEEECCCCCHHHH
T ss_conf             -222---00012-021130-------20105640----8-----89999----998289998513423466588540002


Q ss_pred             HHCCCCCCCCHHHH-CCCCCCCHHHEEEC--CCCCCCEECCCCCCCCHHHHHHH
Q ss_conf             00022111000000-22111211100002--47873011122211100133211
Q gi|255764461|r  306 SLGNVIDPIEVIEE-VGVDALRYFLVREI--ACGKDGFYDKDGLKKRVNADLAN  356 (511)
Q Consensus       306 S~GN~I~~~e~l~~-~g~D~lR~~l~~~~--~~~~D~~Fs~~~~~~~~n~~L~~  356 (511)
                      ..|-+ ....+.++ |=|+++==|++..+  ....+--|+.+++++..|=+.++
T Consensus       285 RqgD~-~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~lt  337 (524)
T KOG1149         285 RQGDA-SVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLT  337 (524)
T ss_pred             HCCCC-HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHC
T ss_conf             03752-388898748773999999998088864102354699999883633204


No 73 
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.35  E-value=3.2e-06  Score=65.10  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=67.3

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             81799788899998832224789789999999988589803623643702279999999839998999999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA   84 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   84 (511)
                      +.=+||-=+|=|||.||||||...++-+-+|+-  ..|.=.+-.-+|+                |..--.+|.+.+++++
T Consensus        27 ~gkVvtRFpPePnG~LHiGHaka~~lN~~~a~~--y~G~~~LRfDDTN----------------P~~e~~e~~~~I~~d~   88 (556)
T PRK05347         27 HTKVHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTN----------------PEKEDQEYVDSIKEDV   88 (556)
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----------------CCCCCHHHHHHHHHHH
T ss_conf             683998049899987618888999866999997--0998999835899----------------8745489999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             980889886747788889999999988875431022110
Q gi|255764461|r   85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGC  123 (511)
Q Consensus        85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~  123 (511)
                      +.||+.++.=+ |.+..+-....+...+|.++|.+|..+
T Consensus        89 ~wLg~~~~~~i-~~~Sd~f~~~y~~a~~LI~~g~AYv~~  126 (556)
T PRK05347         89 RWLGFDWGGEL-RYASDYFDQLYEYAVELIKKGKAYVDD  126 (556)
T ss_pred             HHCCCCCCCEE-EEEHHHHHHHHHHHHHHHHCCCCEECC
T ss_conf             87499889827-881342999999999998648813568


No 74 
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.31  E-value=2.9e-06  Score=65.41  Aligned_cols=92  Identities=22%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             97888999988322247897899999999885898036236437022799999998399989999999999999999808
Q gi|255764461|r    9 ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLD   88 (511)
Q Consensus         9 vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~   88 (511)
                      ||-=.|-|||.||||||++.+....+||-  ..|.=++-+-+||                |+....++.+.+.++++.+|
T Consensus         3 ~tRFAPsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDTD----------------~~r~~~e~~~~I~~~L~wLG   64 (238)
T cd00807           3 VTRFPPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDTN----------------PKKEDEEAYDSILEDLEWLG   64 (238)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCCHHHHHHHHHHHHHC
T ss_conf             69608898986438999999999999998--2996999867789----------------87676168999999999848


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             89886747788889999999988875431022
Q gi|255764461|r   89 ISYDDFIRTTEKRHHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        89 i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy  120 (511)
                      +.+|.-+..+  ++.+.-++...+|.++|.+|
T Consensus        65 l~~De~~~QS--~r~~~y~~~a~~Li~~G~AY   94 (238)
T cd00807          65 IKPDEITYAS--DYFDLYYEYAEKLIKMGKAY   94 (238)
T ss_pred             CCCCCCEECC--CCHHHHHHHHHHHHHCCCCC
T ss_conf             9999315636--67999999999999879987


No 75 
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.28  E-value=6.4e-07  Score=70.25  Aligned_cols=278  Identities=18%  Similarity=0.208  Sum_probs=143.6

Q ss_pred             EEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHHHHH
Q ss_conf             997-888999988322247897899999999885898036236437022799999998399989--99999999999999
Q gi|255764461|r    8 YIS-TAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTK--VFVDQNSRNFRDMA   84 (511)
Q Consensus         8 ~vt-~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~--e~~~~~~~~~~~~~   84 (511)
                      .|+ .| |-||||||||||+..|+=+=+||-  ..|.=.+=+-+||                |+  .--.+..+-+.+++
T Consensus       102 VV~RFa-PnPsGpLhiGhArAa~lN~~fa~~--Y~GklIlR~dDTd----------------P~tkr~~~Eayd~i~eDL  162 (600)
T TIGR00463       102 VVMRFA-PNPSGPLHIGHARAAILNQYFAKK--YEGKLILRFDDTD----------------PRTKRVKPEAYDMILEDL  162 (600)
T ss_pred             EEEECC-CCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEECCC----------------CCCCCCCHHHHHHHHHHH
T ss_conf             577318-545458752335422320466854--1881799975587----------------887888724665248778


Q ss_pred             HHHCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCC
Q ss_conf             980889886747788--889999999988875431022110001011334301556672111222222223320000345
Q gi|255764461|r   85 DVLDISYDDFIRTTE--KRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEE  162 (511)
Q Consensus        85 ~~~~i~~D~~~rT~~--~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~  162 (511)
                      +.|||..|.-+=.|+  +.+++    .-.+|.+.|.+|-..     |+      ++.+=+...+|.-|.+-..-++  + 
T Consensus       163 dwLG~k~Dev~y~Sdr~~~yYd----Y~~kLIe~G~AY~C~-----c~------~Eefre~r~~G~~c~~R~~sve--e-  224 (600)
T TIGR00463       163 DWLGVKGDEVVYQSDRIEIYYD----YARKLIEMGKAYVCD-----CS------PEEFRELRNKGVACACRDRSVE--E-  224 (600)
T ss_pred             HHCCCCEEEEEEEECCHHHHHH----HHHHHHHCCCCEECC-----CC------CHHHHHHHCCCCCCCCCCCCHH--H-
T ss_conf             7528420068983053015689----999998669834327-----98------4468886338887777875124--5-


Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             44344666444443444-33332100067654577541034567532343337776578642221464602444322001
Q gi|255764461|r  163 EGYFFRLSAYQDKLLSY-YESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTT  241 (511)
Q Consensus       163 ~~~f~~l~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~  241 (511)
                           .|.-|.+++++- .+.....+   .+|.- ++-....++||.|=|=. .=-+|-.|+. .++|==+         
T Consensus       225 -----nL~~wte~M~~G~~E~~~~~v---R~KtD-~~h~npaiRD~v~fR~~-~~~HprtG~~-Y~vYP~~---------  284 (600)
T TIGR00463       225 -----NLEIWTEEMLEGEEEEGKVVV---RVKTD-LKHKNPAIRDWVIFRIV-KTPHPRTGDK-YKVYPTM---------  284 (600)
T ss_pred             -----HHHHHHHHHCCCCCCCCCEEE---EEEEC-CCCCCCCCCCCCEEEEE-CCCCCCCCCC-EEECCCC---------
T ss_conf             -----788999871577301660289---98713-67887863476135777-5788886882-2681222---------


Q ss_pred             CCCCCCCCCCCCCCCCCCHHCC-------CCCCCCH--HCCHHHHHHHHHHHHCCCCCCCCCCEEECCC-CCCHH-HCCC
Q ss_conf             2346765431000241100004-------5643210--0010247765433101232333430330586-01000-0022
Q gi|255764461|r  242 TGYLDNPDGSKAKFWPADLHVI-------GKDILRF--HAIYWPAFLLSANLPLPKKVFSHGFILHKGE-KISKS-LGNV  310 (511)
Q Consensus       242 ~~~~~~~~~~~~~~w~~d~~~~-------G~Dii~F--h~i~~pa~l~~~~~~~p~~i~~~g~l~~~G~-KMSKS-~GN~  310 (511)
                               +|.-  |.+-|+.       |||-+--  -.-|   +.+-.|+.+|+ +.+-|++.++-- +.|+| ..-.
T Consensus       285 ---------dF~v--ai~DhllGvTH~LRgkd~~~n~~~q~Y---~Y~y~gw~~p~-~~hyg~~ki~~v~~Lsts~~~~~  349 (600)
T TIGR00463       285 ---------DFSV--AIDDHLLGVTHVLRGKDHIDNERKQQY---IYKYFGWELPE-FIHYGRLKINDVRTLSTSSIKKG  349 (600)
T ss_pred             ---------CCCC--HHHHHCCCCHHHHHHHHHHHHHHHHHH---HHHHHCCCCCC-EEEEEEEEHHHHHHHHHHHHHHH
T ss_conf             ---------6654--243210232032310245521267889---99983223880-23441155113323210345411


Q ss_pred             CCCCCH--------------HH--HCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf             111000--------------00--0221112111000024787301112221110013321102
Q gi|255764461|r  311 IDPIEV--------------IE--EVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGI  358 (511)
Q Consensus       311 I~~~e~--------------l~--~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~l  358 (511)
                      |.-.++              +.  .+-|+++|=++++.++-..|+++||+.+=+ .|..+++.-
T Consensus       350 i~~g~y~GnWDDpRLpTlRa~rRRG~~pEai~~~~~~~G~~~nd~~~sw~~lYA-~Nk~~id~~  412 (600)
T TIGR00463       350 IVRGDYSGNWDDPRLPTLRAVRRRGIKPEAIREFMLSIGVKRNDVKLSWKNLYA-LNKKIIDKK  412 (600)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHH-HHHHHCCCC
T ss_conf             012651246568886302332117881578999999719961244312567766-235540324


No 76 
>KOG1147 consensus
Probab=97.96  E-value=7e-05  Score=55.16  Aligned_cols=98  Identities=16%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             97888999988322247897899999999885898036236437022799999998399989999999999999999808
Q gi|255764461|r    9 ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLD   88 (511)
Q Consensus         9 vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~   88 (511)
                      ||-=+|-|||.||||||...++--    |...++.--+.+-=.|+              .|..=-+++...+.+++..||
T Consensus       202 v~RFPPEpSGyLHIGHAKAALLNq----Yfa~~~~G~LIvRFDDT--------------NPaKE~~eFe~~IleDl~~Lg  263 (712)
T KOG1147         202 VTRFPPEPSGYLHIGHAKAALLNQ----YFAQAYQGKLIVRFDDT--------------NPAKENEEFEDVILEDLSLLG  263 (712)
T ss_pred             EEECCCCCCCEEEHHHHHHHHHHH----HHHHHCCCEEEEEECCC--------------CCCHHHHHHHHHHHHHHHHHC
T ss_conf             785698977602411679999999----99985286299982699--------------920216789999987788708


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             89886747788889999999988875431022110001
Q gi|255764461|r   89 ISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSG  126 (511)
Q Consensus        89 i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~  126 (511)
                      |.+|.++.|+  .|-......-.+|...|-+|..++++
T Consensus       264 Ikpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp~  299 (712)
T KOG1147         264 IKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTPT  299 (712)
T ss_pred             CCCCEEEECH--HHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             5764445313--55999999999998637431369968


No 77 
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA.  Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.84  E-value=6.8e-05  Score=55.27  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             89999883222478978999999998858980362364370227999999983999899999999999999998088988
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD   92 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D   92 (511)
                      .|-|||.||||||++.+....+||-  ..|.=++-+-++|.                +--..++.+.+.++++.+|+.+|
T Consensus         7 APsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~LRieDtD~----------------~R~~~e~~~~I~~dL~wLGl~wD   68 (239)
T cd00808           7 APSPTGYLHIGGARTALFNYLFAKK--HGGKFILRIEDTDQ----------------ERSVEEAEEAILEDLKWLGIDWD   68 (239)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             8898985338999999999999998--19989998456898----------------87876999999999998188877


Q ss_pred             C
Q ss_conf             6
Q gi|255764461|r   93 D   93 (511)
Q Consensus        93 ~   93 (511)
                      .
T Consensus        69 e   69 (239)
T cd00808          69 E   69 (239)
T ss_pred             C
T ss_conf             4


No 78 
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.67  E-value=0.00073  Score=47.64  Aligned_cols=119  Identities=14%  Similarity=0.198  Sum_probs=81.2

Q ss_pred             HHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCC--CC---CCCCHHHHHHH
Q ss_conf             002211121110000247873011122211100133211022102-1345565312332103--45---55895565667
Q gi|255764461|r  318 EEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIP--TP---GAFTESDESIL  391 (511)
Q Consensus       318 ~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip--~~---~~~~~~D~~ll  391 (511)
                      ++.|.|++||++++. ...++.+|+++.+... +++ -+-+.... .|+.+...|.-....+  ..   ....+.+..++
T Consensus         1 e~Ig~~Airy~~L~~-~~~~~~~FD~d~~~~~-~gn-t~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li   77 (156)
T cd07956           1 EEVGVGAVKYQDLSN-KRIKDYTFDWERMLSF-EGD-TGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLI   77 (156)
T ss_pred             CCCCHHHHHHHHHHC-CCCCCCEECHHHHHCC-CCC-CCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHH
T ss_conf             964235788899863-8999845529998623-689-8511248999999999972454533222542004998999999


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH
Q ss_conf             899999999998775035899999999999999788654187012169999
Q gi|255764461|r  392 SVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPD  442 (511)
Q Consensus       392 ~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~  442 (511)
                      ..+.+.++.+..+.++++.+..+..+.+++...|+|.+..+   ..+++.+
T Consensus        78 ~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~~---Ii~~~~~  125 (156)
T cd07956          78 LLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP---VLGAEEE  125 (156)
T ss_pred             HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCHH
T ss_conf             99965728999999970706999999999999999997498---8789889


No 79 
>TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.59  E-value=0.0018  Score=44.78  Aligned_cols=87  Identities=18%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHH-----HHH---HHH-HCCC------C--
Q ss_conf             1799788899998832224789789999999988589803623643702279-----999---999-8399------9--
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQK-----IAK---AAQ-NAGV------T--   68 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~-----i~~---~A~-~~g~------~--   68 (511)
                      .+.|.++ -.|+|.+|+|+++..+.+|.++|-++-.|-++.++--+|++..-     ..-   ... -.|.      .  
T Consensus        20 ~~~~~~g-~~p~g~~~~g~~~~~~~~d~~~~~l~~~g~~~~~~~~~d~~d~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~   98 (539)
T TIGR00467        20 LYTVASG-ITPSGHIHLGNLREVLTADAIARALLDSGGEAKLIYIADDYDPLRKLYPFLPEQEELETYLGLPLTKIPDPE   98 (539)
T ss_pred             CEEEECC-CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             1033204-676660330421456768888888750676147888524510344304567506788887410122067854


Q ss_pred             --HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             --8999999999999999980889886
Q gi|255764461|r   69 --TKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        69 --p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                        ...+++.+...+.+.+..+|+....
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~g~~~~~  125 (539)
T TIGR00467        99 GCCDSYAEHFLRPFLESLPVLGIPPEF  125 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             202456666665667642211676021


No 80 
>KOG1148 consensus
Probab=97.35  E-value=0.00094  Score=46.86  Aligned_cols=95  Identities=20%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r    8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL   87 (511)
Q Consensus         8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~   87 (511)
                      .+|-=||=|||-||||||-.--.-=-+|++   .| -|-|.--+|+              .|+.=.++|.+.|+++...|
T Consensus       249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk~---~~-G~cyLRfDDT--------------NPEkEee~yf~sI~e~V~WL  310 (764)
T KOG1148         249 VVTRFPPEPNGILHIGHAKAINVNFGYAKA---HG-GVCYLRFDDT--------------NPEKEEEEYFESIKEMVAWL  310 (764)
T ss_pred             EEEECCCCCCCEEEECCHHHEEECHHHHHH---HC-CEEEEECCCC--------------CCCHHHHHHHHHHHHHHHHH
T ss_conf             677179898856563213430101244665---09-7689962789--------------82033689999999999871


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88988674778888999999998887543102211
Q gi|255764461|r   88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG  122 (511)
Q Consensus        88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~  122 (511)
                      |...  |--|.+..|-...-+.-..|..+|.+|..
T Consensus       311 G~~P--~kvTysSDyFdqLy~~av~LIrkG~AYVc  343 (764)
T KOG1148         311 GFEP--YKVTYSSDYFDQLYELAVELIRKGKAYVC  343 (764)
T ss_pred             CCCC--EEEECCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             8785--04412416799999999999866864677


No 81 
>KOG4426 consensus
Probab=97.22  E-value=0.0064  Score=40.68  Aligned_cols=53  Identities=25%  Similarity=0.421  Sum_probs=42.9

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH
Q ss_conf             88179978889999883222478978999999998858980362364370227
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ   56 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~   56 (511)
                      .||.+|...-|..--..|+||+|+.|.+|.+.|-+...|++|+-+--.-+-||
T Consensus       187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGT  239 (656)
T KOG4426         187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGT  239 (656)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf             03689835897377776310456566768899999860761675224550577


No 82 
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.08  E-value=0.0034  Score=42.73  Aligned_cols=77  Identities=17%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CCCCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             88881799788-89999883222478978999999998858980362364370227999999983999899999999999
Q gi|255764461|r    2 KEREKLYISTA-IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         2 ~~~~~~~vt~~-~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      ++++++.|-++ -|  +|++||||..+.   .-+++++. .|++|.+.-++. |.. +     ....+|++ +.+....+
T Consensus        26 ~~~~~~rv~~G~~P--TG~lHLGh~v~~---~k~~~lQd-~g~~~~~~IaD~-hA~-i-----~~~~~~~~-~r~~~~~~   91 (333)
T PRK08560         26 ESGEEPKAYIGFEP--SGFIHLGHLVTM---NKLADLQK-AGFKVTVLLADW-HAW-L-----NDKGDLEE-IRKVAEYN   91 (333)
T ss_pred             HCCCCCEEEECCCC--CCCCHHHHHHHH---HHHHHHHH-CCCCEEEEECCC-EEE-C-----CCCCCHHH-HHHHHHHH
T ss_conf             46999889966178--984538999999---99999997-799189996132-233-3-----89999999-99999999


Q ss_pred             HHHHHHHCCCCC
Q ss_conf             999998088988
Q gi|255764461|r   81 RDMADVLDISYD   92 (511)
Q Consensus        81 ~~~~~~~~i~~D   92 (511)
                      .+++.++|++.+
T Consensus        92 ~~~~~A~GlDp~  103 (333)
T PRK08560         92 KKVFEALGLDPD  103 (333)
T ss_pred             HHHHHHHCCCCC
T ss_conf             999997078964


No 83 
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.02  E-value=0.0064  Score=40.69  Aligned_cols=91  Identities=12%  Similarity=0.153  Sum_probs=57.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf             99883222478978999999998858980362364370227999999983999899999999999999998088988---
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD---   92 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D---   92 (511)
                      |+|.|||||-.+.+.--+  +.....+++++|.- .|-|-+-       .-.+|++ ..++.-++..+|=++||+.+   
T Consensus        11 PTG~lHLGNY~GAik~~v--~~~~q~~~e~f~fI-AD~HALT-------~~~dp~~-l~~~t~eiaa~~LA~GlDPekst   79 (436)
T PRK12284         11 TTGTPHLGNYVGAIRPAI--AASRQPGVESFYFL-ADYHALI-------KCDDPAR-IQRSTLEIAATWLAAGLDPERVT   79 (436)
T ss_pred             CCCCCHHHHHHHHHHHHH--HHHHCCCCCEEEEE-ECCCCCC-------CCCCHHH-HHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             899752888999999999--98638998669999-6400056-------8899999-99999999999998586802225


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             67477888899999999888754310
Q gi|255764461|r   93 DFIRTTEKRHHDTCRILWKKISDKGD  118 (511)
Q Consensus        93 ~~~rT~~~~~~~~~~~~~~~l~~~G~  118 (511)
                      .|....-|+|.+.. +++.-+.-.|.
T Consensus        80 ~f~QS~VPE~~EL~-wiLs~~t~~g~  104 (436)
T PRK12284         80 FYRQSDIPEIPELT-WLLTCVAGKGL  104 (436)
T ss_pred             EEECCCCHHHHHHH-HHHHCCCCHHH
T ss_conf             88788877999999-99976384888


No 84 
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.01  E-value=0.012  Score=38.80  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             88881799788899998832224789789999999988589803623643702279999999839998999999999999
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      ++.++++|-|+ --|+|++||||+.++..    ++|+.-.|-+|...-.+|+   +-..    .+.+-+|.-....++..
T Consensus        62 e~g~~f~lyTG-rgPSg~mHlGH~ipf~~----~k~lQ~fg~~l~I~iaDdE---kfl~----r~~t~ee~~~~a~eeni  129 (369)
T PRK12285         62 KNGKPFAVYTG-RMPSGKMHIGHKMVFDQ----LKWFQEFGADVYIQIADLE---AYSA----RGMSLEETREIAIEEYI  129 (369)
T ss_pred             HCCCCEEEEEC-CCCCCCCCCCHHHHHHH----HHHHHHCCCCEEEEECCHH---HHHH----CCCCHHHHHHHHHHHHH
T ss_conf             83997699936-68888755201509999----9999987996899935579---9872----79989999999999888


Q ss_pred             HHHHHHCCCCC
Q ss_conf             99998088988
Q gi|255764461|r   82 DMADVLDISYD   92 (511)
Q Consensus        82 ~~~~~~~i~~D   92 (511)
                      .++-++|...|
T Consensus       130 kdiiAlGfdp~  140 (369)
T PRK12285        130 LNYIALGFDPD  140 (369)
T ss_pred             HHHHHCCCCCC
T ss_conf             88987087800


No 85 
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.00  E-value=0.00027  Score=50.86  Aligned_cols=45  Identities=27%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf             899998832224789789999999988589803623643702279999999
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQ   63 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~   63 (511)
                      .++++|++|+||+.....++.++|      +++..+...++++.++...+.
T Consensus         3 ~~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~   47 (147)
T cd02156           3 APGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPIKKLKG   47 (147)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCHHHCCC
T ss_conf             986048767899999999999999------769928999789991453378


No 86 
>KOG1195 consensus
Probab=96.96  E-value=0.014  Score=38.15  Aligned_cols=146  Identities=13%  Similarity=0.111  Sum_probs=77.8

Q ss_pred             HHHHHHHHCCCCCCCCCCEEEC-CCCCCHHHCCCCCCCCHHHH----------------------------CCCCCCCHH
Q ss_conf             7654331012323334303305-86010000022111000000----------------------------221112111
Q gi|255764461|r  278 FLLSANLPLPKKVFSHGFILHK-GEKISKSLGNVIDPIEVIEE----------------------------VGVDALRYF  328 (511)
Q Consensus       278 ~l~~~~~~~p~~i~~~g~l~~~-G~KMSKS~GN~I~~~e~l~~----------------------------~g~D~lR~~  328 (511)
                      ++...|..|.+.+   .|+... ++=||+-+|.++-..|++++                            .|.-++..=
T Consensus       345 ilk~mg~~~a~~~---qHV~~G~v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~  421 (567)
T KOG1195         345 ILKKMGFDWAKKL---QHVNFGRVQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQ  421 (567)
T ss_pred             HHHHHCCHHHHHC---CEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999584256435---1441121125435677423189999999999999997365777777887899988745778799


Q ss_pred             HEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCCC------CCCCCHH-HHHHHHHHHHHHHH
Q ss_conf             0000247873011122211100133211022102-13455653123321034------5558955-65667899999999
Q gi|255764461|r  329 LVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIPT------PGAFTES-DESILSVCSRVLQE  400 (511)
Q Consensus       329 l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip~------~~~~~~~-D~~ll~~l~~~~~~  400 (511)
                      .. .+...++-.|+|+..-+- |.+ -+.+-... +|.-+. +++|....+.      ...+++. -..++..+....+-
T Consensus       422 d~-k~rr~s~yeF~w~~~~~~-~gd-tg~yLQY~HsRL~Sl-erk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~v  497 (567)
T KOG1195         422 DF-KGRRISNYEFSWNRVLSF-EGD-TGPYLQYTHSRLRSL-ERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEV  497 (567)
T ss_pred             HH-HHHHCCCCEEEHHHHHEE-CCC-CHHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             98-887505636770030021-688-447888878789999-98625667044410216651773699999998500899


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998775035899999999999999788654
Q gi|255764461|r  401 IRENMQNQLIHRALAQVISLVSEVDRYFDA  430 (511)
Q Consensus       401 v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~  430 (511)
                      +..++|.++.+..+..++.++..++.....
T Consensus       498 ve~s~e~lE~~~lV~YL~~La~a~s~~yk~  527 (567)
T KOG1195         498 VEKSMEQLEPCTLVTYLFKLAHAVSSAYKI  527 (567)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999997624343799999999999867761


No 87 
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.84  E-value=0.019  Score=37.26  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             88881799788899998832224789789999999988589-80362364370227999999983999899999999999
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDG-LDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G-~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      ...++.++|.-.|+  |++||||-.+.+.    .+++-..+ ++++|. =.|.|..-+      .+..+++-..+...+.
T Consensus         2 ~~~~~~vlSG~~PS--G~lHLGny~ga~~----~~v~~q~~~~~~f~~-IaDlha~t~------~~~~~~~~l~~~~~e~   68 (314)
T COG0180           2 NMKKFRVLSGIQPS--GKLHLGNYLGAIR----NWVLLQEEYYECFFF-IADLHAITV------RQDPTEEDLRQATREV   68 (314)
T ss_pred             CCCCCEEEECCCCC--CCCCHHHHHHHHH----HHHHHHCCCCCEEEE-EECHHHHHC------CCCCHHHHHHHHHHHH
T ss_conf             98885677567889--9752157699999----999985355754999-962777554------8887699999999999


Q ss_pred             HHHHHHHCCCCC---CCCCCCCHHHHHHHHHH
Q ss_conf             999998088988---67477888899999999
Q gi|255764461|r   81 RDMADVLDISYD---DFIRTTEKRHHDTCRIL  109 (511)
Q Consensus        81 ~~~~~~~~i~~D---~~~rT~~~~~~~~~~~~  109 (511)
                      ..++=++||+++   .|..+.-++|.+....+
T Consensus        69 ~a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l  100 (314)
T COG0180          69 AADYLAVGLDPEKSTIFLQSEVPEHAELAWLL  100 (314)
T ss_pred             HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             99998704685602799806866799999999


No 88 
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=96.79  E-value=0.0073  Score=40.27  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf             99883222478978999999998858980362364370227999999983999899999999999999998088988---
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD---   92 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D---   92 (511)
                      |+|++||||..+.+.   ...++. .|++|.+.-+++ |..  ..    .+.+|++ +.++..+..+++-++|++.+   
T Consensus         9 PTG~~HlG~~v~~~k---~~~~~~-~g~~~~i~iaD~-ha~--t~----~~~~~~~-~~~~~~~~~~~~lA~G~Dp~k~~   76 (282)
T cd00806           9 PSGSLHLGHYLGAIR---NWVLQQ-EGYELFFFIADL-HAL--TV----KQSDPEE-LRQNTRENAADYLACGLDPEKST   76 (282)
T ss_pred             CCCCCHHHHHHHHHH---HHHHHH-CCCCEEEEEECH-HHH--HC----CCCCHHH-HHHHHHHHHHHHHHCCCCHHHEE
T ss_conf             897147888999999---999997-899199998043-888--67----9999999-99999999999999198888908


Q ss_pred             CCCCCCCHHHHHH
Q ss_conf             6747788889999
Q gi|255764461|r   93 DFIRTTEKRHHDT  105 (511)
Q Consensus        93 ~~~rT~~~~~~~~  105 (511)
                      .|..+..++|.+.
T Consensus        77 i~~qS~~~~~~el   89 (282)
T cd00806          77 IFFQSDVPEHYEL   89 (282)
T ss_pred             EEEECCCHHHHHH
T ss_conf             9983742789999


No 89 
>TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.72  E-value=0.0018  Score=44.78  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=59.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999988322247897899999999885898-036236437022799999998399989999999999999999808898
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGL-DVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISY   91 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~-~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~   91 (511)
                      ||=|||-|||||+-+-.+-==+|++  .+|. +-+    .||             +.|..=.-+|.+.++.+.+.||...
T Consensus         6 PPEPNGYLHIGHaK~I~~NFG~Ak~--y~G~C~LR----FDD-------------TNP~KE~~EY~eSIK~~V~WLGFkw   66 (564)
T TIGR00440         6 PPEPNGYLHIGHAKSICLNFGLAKE--YKGTCNLR----FDD-------------TNPVKEDVEYVESIKRDVEWLGFKW   66 (564)
T ss_pred             CCCCCCCEEHHHHHHHHHHCCCCCC--CCCCEEEE----CCC-------------CCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             8557873001024313442032020--17636442----167-------------8886466017888752222225124


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8674778888999999998887543102211
Q gi|255764461|r   92 DDFIRTTEKRHHDTCRILWKKISDKGDIYKG  122 (511)
Q Consensus        92 D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~  122 (511)
                      ..=+ |-+..|-......-..|.++|.+|..
T Consensus        67 ~g~~-~YsSDYFD~Ly~~A~~LI~~G~AYV~   96 (564)
T TIGR00440        67 EGKI-RYSSDYFDELYRYAVELIKKGLAYVD   96 (564)
T ss_pred             CCCE-EECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             7731-33304688999999999867960675


No 90 
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA.  TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.65  E-value=0.00081  Score=47.30  Aligned_cols=71  Identities=18%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             CCC-CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             998-83222478978999999998858980362364370227---99999998399989999999999999999808898
Q gi|255764461|r   16 PNA-QPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ---KIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISY   91 (511)
Q Consensus        16 ~ng-~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~---~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~   91 (511)
                      |+| .|||||..+.+.   +.+. ...|+++.++-|.- |+.   |--....+...+ .+.+....+.+.+++.+++.+.
T Consensus         9 PTG~~lHLGhyv~~~~---~~~~-q~~g~~~~~~IaD~-hAli~dp~~~~~~r~~~~-~e~i~~~~~~~~~~~~~~~~~~   82 (268)
T cd00805           9 PTAPSLHLGHLVPLMK---LRDF-QQAGHEVIVLIGDA-TAMIGDPSGKSEERKLLT-EEEILENAKYIKKQIKAILKFI   82 (268)
T ss_pred             CCCCCCCHHHHHHHHH---HHHH-HHCCCCEEEEEECC-EEECCCCCCCCHHHCCCC-HHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999724999999999---9999-87899589999542-014058976502221461-9999998873899998852589


Q ss_pred             C
Q ss_conf             8
Q gi|255764461|r   92 D   92 (511)
Q Consensus        92 D   92 (511)
                      |
T Consensus        83 ~   83 (268)
T cd00805          83 P   83 (268)
T ss_pred             C
T ss_conf             9


No 91 
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.56  E-value=0.038  Score=35.00  Aligned_cols=91  Identities=16%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             98888179978889999883222478978999999998858980362364370227999999983999899999999999
Q gi|255764461|r    1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         1 m~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      |+  ||.+++.--|+  |.|||||-.+.+.-  +++.+...+++++|. =.|-|-+-       ...+|+++ .++....
T Consensus         1 m~--k~~i~SGiqPT--G~lHLGNYlGaik~--~v~l~~~~~~~~~~~-IaDlHalT-------~~~dp~~l-~~~~~~~   65 (328)
T PRK12556          1 MS--EKIMLTGIKPT--GYPHLGNYIGAIKP--ALQMSKNNEGKALYF-IADYHALN-------AVHDPEQF-SSYTKEV   65 (328)
T ss_pred             CC--CCEEEECCCCC--CCCCHHHHHHHHHH--HHHHHHCCCCCEEEE-EECHHHCC-------CCCCHHHH-HHHHHHH
T ss_conf             99--99688577989--97508889999999--999754799877999-85142235-------88999999-9999999


Q ss_pred             HHHHHHHCCCCC--CCCCCCCHHHHHHH
Q ss_conf             999998088988--67477888899999
Q gi|255764461|r   81 RDMADVLDISYD--DFIRTTEKRHHDTC  106 (511)
Q Consensus        81 ~~~~~~~~i~~D--~~~rT~~~~~~~~~  106 (511)
                      ..++-+.||+++  .|...+-|+|.+..
T Consensus        66 ~a~~LA~GlDP~~~~f~QS~Vpeh~eL~   93 (328)
T PRK12556         66 AATWLSLGLGEDVIFYRQTEVPEILELA   93 (328)
T ss_pred             HHHHHHCCCCCCEEEEECCCCHHHHHHH
T ss_conf             9999975899874999878973999999


No 92 
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.46  E-value=0.029  Score=35.89  Aligned_cols=93  Identities=12%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             CEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHH--HCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             81799788899998-832224789789999999988--589803623643702279999999839998999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNA-QPHIGHAYEMIIADVLARFHR--LDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus         5 ~~~~vt~~~Py~ng-~lHlGH~~~~i~~D~~~R~~r--~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      +++++|.-.|.  | .+||||-.+.+.    .++.-  ..|++.++.-.++ |  .|..+   .+++-.+.......++.
T Consensus         2 ~~~~~tG~~PS--Gd~~HlGnylg~~~----~~~~~~~q~~~~~~~~~aD~-h--a~~~~---~~l~~~~~~~~~~~e~~   69 (366)
T TIGR00233         2 KFRVLTGIQPS--GDKMHLGNYLGAIR----LKVLQEEQEGYELFFCIADL-H--AITVK---QDLTDPDTLRKAREELV   69 (366)
T ss_pred             CCEEEECCCCC--CCCCCCCCHHHHHH----HHHHHHHHCCCCEEEEEECC-H--HHHCC---CCCCHHHHHHHHHHHHH
T ss_conf             84788354576--87644330066788----88777431689768997372-5--65146---78881778999999999


Q ss_pred             HHHHHHCCCCC---CCCCCCCH---HHHHHHHHH
Q ss_conf             99998088988---67477888---899999999
Q gi|255764461|r   82 DMADVLDISYD---DFIRTTEK---RHHDTCRIL  109 (511)
Q Consensus        82 ~~~~~~~i~~D---~~~rT~~~---~~~~~~~~~  109 (511)
                      .++=++||+++   .|..+.-+   +|.+.+.-+
T Consensus        70 ~~~lA~GlDP~K~~~f~QS~~~G~~~~~~l~~~l  103 (366)
T TIGR00233        70 ADYLAVGLDPEKTTIFLQSEVPGGTEHYELAWLL  103 (366)
T ss_pred             HHHHHHCCCHHHEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9998726473146787505766514578999999


No 93 
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.34  E-value=0.0015  Score=45.31  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=43.8

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC--CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             1799788899998832224789789999999988589803623643--70227999999983999899999999999999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT--DEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM   83 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~--D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~   83 (511)
                      ++|+-.= |++ .+|||||+.+...   + |.....||.|..+-|.  -.=|-|.-...++.-.++++ +.++.+.++++
T Consensus        39 ~vy~GfD-PTa-~sLHlGhlv~l~~---L-~~fq~~Gh~~i~liGg~T~~IGDPSgk~~~R~~l~~e~-i~~N~~~~~~q  111 (405)
T PRK13354         39 TLKLGLD-PTA-PDIHIGHLVVLRK---L-KQFQDAGHRAVILIGDFTGKIGDPTGKSKERKLLTDEQ-VQHNADTYTEQ  111 (405)
T ss_pred             EEEEEEC-CCC-CCCHHHHHHHHHH---H-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH
T ss_conf             8999546-998-8520764999999---9-99998699479996786542569999854566767999-99999999999


Q ss_pred             HHHH
Q ss_conf             9980
Q gi|255764461|r   84 ADVL   87 (511)
Q Consensus        84 ~~~~   87 (511)
                      +.++
T Consensus       112 ~~~~  115 (405)
T PRK13354        112 IFKL  115 (405)
T ss_pred             HHHH
T ss_conf             9986


No 94 
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.27  E-value=0.07  Score=33.02  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r    8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL   87 (511)
Q Consensus         8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~   87 (511)
                      ++|.-.|+  |.|||||-.+.+.  -+++.+  .+++++|. =.|-|-+-+.      ..+|+++ .++.-++..++=++
T Consensus         5 vlSGiqPT--G~lHLGNylGai~--~~v~lQ--~~~~~~~~-IaDlHAlT~~------~~~p~~l-~~~~~~~~a~~LA~   70 (398)
T PRK12283          5 VLSGMRPT--GRLHLGHYHGVLK--NWVKLQ--HEYPCFFF-VADWHALTTH------YETPEVI-EKNVWDMVIDWLAA   70 (398)
T ss_pred             CEECCCCC--CCCCHHHHHHHHH--HHHHHH--HCCCEEEE-EECHHHHCCC------CCCHHHH-HHHHHHHHHHHHHC
T ss_conf             75271789--9861688999999--999986--03770899-9536552078------7899999-99999999999975


Q ss_pred             CCCCC---CCCCCCCHHHHHHHH
Q ss_conf             88988---674778888999999
Q gi|255764461|r   88 DISYD---DFIRTTEKRHHDTCR  107 (511)
Q Consensus        88 ~i~~D---~~~rT~~~~~~~~~~  107 (511)
                      ||+++   .|....-|+|.+...
T Consensus        71 GlDP~ks~if~QS~Vpeh~eL~w   93 (398)
T PRK12283         71 GVDPAQATLFIQSKVPEHAELHL   93 (398)
T ss_pred             CCCCCCCEEEECCCCHHHHHHHH
T ss_conf             88813075886788689999999


No 95 
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=96.13  E-value=0.074  Score=32.81  Aligned_cols=88  Identities=8%  Similarity=0.043  Sum_probs=54.5

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             81799788899998832224789789999999988589803623643702279999999839998999999999999999
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA   84 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   84 (511)
                      ||+++|.--|+  |.+||||..+.+..-  +..+  ..++++|. =.|-|-.-.      ...+|+++ .++..+...++
T Consensus         2 k~~ilSGiqPT--G~~HLGnylGai~~~--v~lQ--~~~~~~~~-IaDlHalT~------~~~~~~~l-~~~~~~~aa~~   67 (333)
T PRK12282          2 KPIILTGDRPT--GKLHLGHYVGSLKNR--VALQ--NEHKQFVL-IADTQALTD------NAHNPEKI-RENILEVALDY   67 (333)
T ss_pred             CCEEEECCCCC--CCCHHHHHHHHHHHH--HHHH--CCCCCEEE-EECHHHHHC------CCCCHHHH-HHHHHHHHHHH
T ss_conf             99788490878--835488789999999--9997--16880799-844788745------89999999-99999999999


Q ss_pred             HHHCCCCC---CCCCCCCHHHHHHH
Q ss_conf             98088988---67477888899999
Q gi|255764461|r   85 DVLDISYD---DFIRTTEKRHHDTC  106 (511)
Q Consensus        85 ~~~~i~~D---~~~rT~~~~~~~~~  106 (511)
                      -++|++++   .|..+.-|+|.+..
T Consensus        68 lA~GlDP~k~~if~QS~v~eh~eL~   92 (333)
T PRK12282         68 LAVGIDPAKSTIFVQSQIPALAELT   92 (333)
T ss_pred             HHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf             9758985642899737866889999


No 96 
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.89  E-value=0.028  Score=35.92  Aligned_cols=66  Identities=17%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99883222478978999999998858980362364370227999999983999899999999999999998088988
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD   92 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D   92 (511)
                      |+|++||||+.+.+   ...++++. |++|.+.-|.+. ..  ...   -..+++ -+.++...+..++.++|+..+
T Consensus         9 PTg~lHlG~~v~~~---~~~~~q~~-g~~~~~~iaD~~-a~--~~d---~~~~~~-~i~~~~~~~~~~~~a~g~d~~   74 (274)
T cd00395           9 PTGSLHLGHYVGAI---KLKVLQQA-GHEVIILIADLH-AL--TGD---PSLDPE-EIRKNAREIAKQILALGLDPE   74 (274)
T ss_pred             CCCCCHHHHHHHHH---HHHHHHHC-CCCEEEEEECCC-CC--CCC---CCCCHH-HHHHHHHHHHHHHHHHCCCHH
T ss_conf             88714689999999---99999988-998899990771-14--379---999999-999999999999999779947


No 97 
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=95.86  E-value=0.0046  Score=41.77  Aligned_cols=53  Identities=34%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             CCHHCCCCCCCCHHCCHHHHHHHHHHH---------HCCCCCCCCCCEE-ECC-CCCCHHHCC-CCCCCCHHH
Q ss_conf             100004564321000102477654331---------0123233343033-058-601000002-211100000
Q gi|255764461|r  258 ADLHVIGKDILRFHAIYWPAFLLSANL---------PLPKKVFSHGFIL-HKG-EKISKSLGN-VIDPIEVIE  318 (511)
Q Consensus       258 ~d~~~~G~Dii~Fh~i~~pa~l~~~~~---------~~p~~i~~~g~l~-~~G-~KMSKS~GN-~I~~~e~l~  318 (511)
                      .++.+.|.|+       ||-+.++.++         +.|. .+++-++. .+| +|||||.|| .|+..|-.+
T Consensus       150 ~~i~~gG~DQ-------~~~~~l~rdl~~k~~~~~~~~p~-~l~~~ll~~~~G~~KMSKS~~nsaI~L~d~~~  214 (291)
T pfam00579       150 ADLQPGGSDQ-------WGHIELGRDLARRFNKKVFKKPV-GLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKE  214 (291)
T ss_pred             CCCCCCCCCH-------HHHHHHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCEEECCCCHH
T ss_conf             6756656004-------89999999999995785678834-87416622667876636789997266679867


No 98 
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=95.43  E-value=0.15  Score=30.48  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=21.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             999999999999999999999985432248999999984988
Q gi|255764461|r  439 TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA  480 (511)
Q Consensus       439 ~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P~~ae~i~~~Lg~~  480 (511)
                      +|++....+|....+-.|.+|       =.+.+++.+.+|+.
T Consensus       296 ~d~~~l~~iL~~Ga~kAr~iA-------~~tl~~Vr~~~Gl~  330 (333)
T PRK12282        296 KDKGAVYDMLKEGSEKAREVA-------AQTLDEVKDAMGLN  330 (333)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCC
T ss_conf             099999999999999999999-------99999999970886


No 99 
>pfam01927 DUF82 Protein of unknown function DUF82. This prokaryotic protein family has no known function. The protein contains four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=95.25  E-value=0.047  Score=34.31  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=26.3

Q ss_pred             HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf             999998858980362364370227999999983999
Q gi|255764461|r   33 VLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT   68 (511)
Q Consensus        33 ~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~   68 (511)
                      -+|||+|+.|+|+.|..+.++  ..+...|.+++..
T Consensus        11 ~LAr~LR~lG~Dt~~~~~~~D--~~l~~~A~~E~Ri   44 (146)
T pfam01927        11 KLARWLRLLGYDTLYDNDFED--DELLAIAAKEGRI   44 (146)
T ss_pred             HHHHHHHHCCCCEEECCCCCH--HHHHHHHHHCCCE
T ss_conf             999999986988701599985--9999998664989


No 100
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.14  E-value=0.22  Score=29.39  Aligned_cols=32  Identities=31%  Similarity=0.370  Sum_probs=22.2

Q ss_pred             HHCCCCCCCC-CC-E-EECCCCCCHHHCCCCCCCC
Q ss_conf             1012323334-30-3-3058601000002211100
Q gi|255764461|r  284 LPLPKKVFSH-GF-I-LHKGEKISKSLGNVIDPIE  315 (511)
Q Consensus       284 ~~~p~~i~~~-g~-l-~~~G~KMSKS~GN~I~~~e  315 (511)
                      .+.|..++.. .- | -+||+|||||.||.|...+
T Consensus       181 F~~Pea~i~e~~a~lpGlDGrKMSKSy~NtI~Lf~  215 (436)
T PRK12284        181 FVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFS  215 (436)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             37884423688772249998705578898064878


No 101
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.13  E-value=0.26  Score=28.76  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf             99883222478978999999998858980362364370227999999983999899999999999999998088988---
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYD---   92 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D---   92 (511)
                      |+|.+||||..+.+.  -+.+.+  .++++++. =.|-|.+.       ...+|.++ .++...+..++-++|++++   
T Consensus         9 PtG~~HlGny~g~i~--~~~~lq--~~~~~~~~-iaD~halt-------~~~~~~~l-~~~~~~~~~~~lA~GlDp~k~~   75 (325)
T PRK00927          9 PTGKLHLGNYLGAIK--NWVELQ--DDYECFFC-IADLHAIT-------VPQDPKEL-RENTRELAADYLACGIDPEKST   75 (325)
T ss_pred             CCCCCHHHHHHHHHH--HHHHHH--HCCCEEEE-EECHHHHC-------CCCCHHHH-HHHHHHHHHHHHHCCCCCCCCE
T ss_conf             898254887999999--999986--02764999-85687864-------68889999-9999999999997297810087


Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             67477888899999
Q gi|255764461|r   93 DFIRTTEKRHHDTC  106 (511)
Q Consensus        93 ~~~rT~~~~~~~~~  106 (511)
                      .|....-|+|.+..
T Consensus        76 ~f~QS~v~~~~eL~   89 (325)
T PRK00927         76 IFVQSHVPEHAELA   89 (325)
T ss_pred             EEECCCCHHHHHHH
T ss_conf             98778970688999


No 102
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=94.98  E-value=0.11  Score=31.59  Aligned_cols=88  Identities=18%  Similarity=0.256  Sum_probs=47.7

Q ss_pred             HHHHHHHHCCCCEEECC-CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999885898036236-43702279999999839998999999999999999980889886747788889999999988
Q gi|255764461|r   33 VLARFHRLDGLDVLFTT-GTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWK  111 (511)
Q Consensus        33 ~~~R~~r~~G~~v~~~~-g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~  111 (511)
                      -+||++|+.||++.|.+ .+|+   .|..-|.++|.-   +..+-.+-+++.  ++|+. -.|+++++++  +...++..
T Consensus        17 ~LARwLRllGydt~~~~~~~d~---~i~~i~~~e~rI---llTRDr~L~~r~--k~g~~-~i~i~~~s~~--~Ql~e~~~   85 (165)
T COG1656          17 KLARWLRLLGYDTVYSSNESDD---EIILIAKKEGRI---LLTRDRELYKRA--KLGIK-AILIRSDSIE--EQLAEFLA   85 (165)
T ss_pred             HHHHHHHHCCCCEEEECCCCCH---HHHHHHHCCCEE---EEECCHHHHHHH--HCCCC-EEEEECCCHH--HHHHHHHH
T ss_conf             9999999808842542367838---899987447808---996229999986--42673-2897179879--99999999


Q ss_pred             HHHHHHCCCCCCHHHHCCCCCCC
Q ss_conf             87543102211000101133430
Q gi|255764461|r  112 KISDKGDIYKGCYSGWYSLRDEA  134 (511)
Q Consensus       112 ~l~~~G~iy~~~~~~~y~~~~~~  134 (511)
                      ++-.++-.   ..+.--||.|..
T Consensus        86 ~~~l~~~~---~~e~~RCp~CN~  105 (165)
T COG1656          86 RLGLKPRL---FPEFSRCPECNG  105 (165)
T ss_pred             HHCCCHHC---CCCCCCCCCCCC
T ss_conf             83522001---601032743497


No 103
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.72  E-value=0.017  Score=37.59  Aligned_cols=69  Identities=20%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             CCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEE-ECC-CCCCHHHCCCCC-CCCHHHHCCCCCCCHHHEEEC
Q ss_conf             1000045643210001024776543-310123233343033-058-601000002211-100000022111211100002
Q gi|255764461|r  258 ADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFIL-HKG-EKISKSLGNVID-PIEVIEEVGVDALRYFLVREI  333 (511)
Q Consensus       258 ~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~-~~G-~KMSKS~GN~I~-~~e~l~~~g~D~lR~~l~~~~  333 (511)
                      .++.+.|.|+..++.+-= -+.... +++.|..+. +-++. .+| +|||||.||.+. ..|     +++.++=.+.+..
T Consensus       142 ~~~v~~G~DQ~~~~~l~R-dia~k~~~~~~p~~l~-~~~l~~l~G~~KMSKS~~ns~i~l~D-----sp~~i~~KI~~a~  214 (274)
T cd00395         142 ADLVPGGSDQDPHIELGR-DLARRFNGFKKPVALT-SPLLTGLDGGKKMSKSDGNAIIFLLD-----SPEEIYKKIMKAY  214 (274)
T ss_pred             CCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCEEECCC-----CHHHHHHHHEECC
T ss_conf             654555611799999999-9999944999986872-37744689976745789984465469-----9999999872240


No 104
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA.  TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.44  E-value=0.12  Score=31.30  Aligned_cols=47  Identities=26%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             CCHHCCCCCCCCHHCCHHHHHHHHH------HHHCCCCCCCCCCEE-ECCCCCCHHHCCCCC
Q ss_conf             1000045643210001024776543------310123233343033-058601000002211
Q gi|255764461|r  258 ADLHVIGKDILRFHAIYWPAFLLSA------NLPLPKKVFSHGFIL-HKGEKISKSLGNVID  312 (511)
Q Consensus       258 ~d~~~~G~Dii~Fh~i~~pa~l~~~------~~~~p~~i~~~g~l~-~~G~KMSKS~GN~I~  312 (511)
                      .++.+.|.|+..++       .++.      +.+.| .++++.++. .+|+|||||.||.|+
T Consensus       151 ~~~vpvG~DQ~~hi-------el~Rdia~r~n~~~~-~~l~~pll~g~dG~KMSKS~~N~i~  204 (268)
T cd00805         151 VDIQLGGSDQRGNI-------TLGRDLIRRLGYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW  204 (268)
T ss_pred             CCCEECCHHHHHHH-------HHHHHHHHHHCCCCC-EEEEECEEECCCCCCCCCCCCCCCC
T ss_conf             77146060089999-------999999998289761-4553110008998744678999501


No 105
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.40  E-value=0.41  Score=27.36  Aligned_cols=29  Identities=31%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             EECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHE
Q ss_conf             3058601000002211100000022111211100
Q gi|255764461|r  297 LHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLV  330 (511)
Q Consensus       297 ~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~  330 (511)
                      -.||+|||||.||.|...|-     +|.+|--+.
T Consensus       259 glDGkKMSKS~~n~I~L~D~-----~~~I~KKI~  287 (398)
T PRK12283        259 GLDGQKMSKSYGNTIGLRED-----PETVTKKIR  287 (398)
T ss_pred             CCCCCCCCCCCCCEEECCCC-----HHHHHHHHH
T ss_conf             99986457999997555289-----999999997


No 106
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=94.12  E-value=0.092  Score=32.12  Aligned_cols=42  Identities=24%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             CEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             81799788-8999988322247897899999999885898036236437
Q gi|255764461|r    5 EKLYISTA-IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         5 ~~~~vt~~-~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      +++.|-+. -|  +|+|||||+++.   -.+.++++ .|++|.++-|..
T Consensus         4 k~~~vy~G~~P--Tg~lHlGhl~~~---~~~~~lq~-~g~~~~~liad~   46 (291)
T pfam00579         4 RPLRVYTGFDP--TGPLHLGYLVPL---MKLVQFQQ-AGHEVFFLIGDL   46 (291)
T ss_pred             CCCEEEEEECC--CCHHHHHHHHHH---HHHHHHHH-CCCCEEEEECCC
T ss_conf             98189973488--963077989999---99999997-899099997383


No 107
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=94.09  E-value=0.021  Score=36.90  Aligned_cols=57  Identities=32%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             CCHHCCCCCCCCHHCCHHHHHHHHHH------HHCCCCCCCCC-CEE--ECC-CCCCHHHCC-CCCCCC
Q ss_conf             10000456432100010247765433------10123233343-033--058-601000002-211100
Q gi|255764461|r  258 ADLHVIGKDILRFHAIYWPAFLLSAN------LPLPKKVFSHG-FIL--HKG-EKISKSLGN-VIDPIE  315 (511)
Q Consensus       258 ~d~~~~G~Dii~Fh~i~~pa~l~~~~------~~~p~~i~~~g-~l~--~~G-~KMSKS~GN-~I~~~e  315 (511)
                      .|+-+.|.|+. +|-.+=--+..-.|      ++.|..++..+ ++.  .+| +|||||.+| .|...|
T Consensus       139 ~d~vp~G~DQ~-~h~~laRdia~k~n~~~~~~~~~P~~~~~~~~~i~~l~~g~~KMSKS~~ns~I~l~D  206 (282)
T cd00806         139 ADLVPVGEDQD-PHLELTRDIARRFNKLYGEIFPKPEALISKGARIPSLTGPSKKMSKSDPNTIIFLLD  206 (282)
T ss_pred             CCCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             65052220479-999999999999865506534664110155551667889767555689997445417


No 108
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.95  E-value=0.42  Score=27.28  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             HHCCCCCCC-CC-CE---EECCCCCCHHHCC---CCCCCCH
Q ss_conf             101232333-43-03---3058601000002---2111000
Q gi|255764461|r  284 LPLPKKVFS-HG-FI---LHKGEKISKSLGN---VIDPIEV  316 (511)
Q Consensus       284 ~~~p~~i~~-~g-~l---~~~G~KMSKS~GN---~I~~~e~  316 (511)
                      .+.|+.++. ++ .+   ..+|+|||||.+|   .|...|-
T Consensus       169 f~~P~~~~~~~~~~i~~L~~~~~KMSKS~~n~~s~I~l~d~  209 (325)
T PRK00927        169 FPVPEPLIPKVGARVMSLQDPTKKMSKSDGNDNSTINLLDD  209 (325)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             26775500777660678989551014467997655651389


No 109
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=93.82  E-value=0.03  Score=35.69  Aligned_cols=75  Identities=17%  Similarity=0.200  Sum_probs=44.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             17997888999988322247897899999999885898036236437--0227999999983999899999999999999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD--EHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM   83 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D--~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~   83 (511)
                      ++|+-.- |++ .+||+||+.+...    -|.....||.+..+-|.=  -=|-|.=..+++.-.+. |-++++.+.++++
T Consensus        34 ~~y~G~D-PTa-~sLH~Ghlv~l~~----L~~fq~~Gh~~i~lvGg~T~~IGDPSGk~~~R~~l~~-e~i~~N~~~i~~q  106 (402)
T PRK05912         34 RIKLGFD-PTA-PDLHLGHLVVLLK----LRRFQDLGHKPIFLIGDFTGMIGDPSGKSATRKLLTR-EQVLENAETYKEQ  106 (402)
T ss_pred             EEEEEEC-CCC-CCCCHHHHHHHHH----HHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCCCH-HHHHHHHHHHHHH
T ss_conf             7998146-998-7520652999999----9999986996499967752450189998655668899-9999999999999


Q ss_pred             HHHH
Q ss_conf             9980
Q gi|255764461|r   84 ADVL   87 (511)
Q Consensus        84 ~~~~   87 (511)
                      +.++
T Consensus       107 ~~~~  110 (402)
T PRK05912        107 LFKI  110 (402)
T ss_pred             HHHH
T ss_conf             9987


No 110
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.75  E-value=0.031  Score=35.61  Aligned_cols=74  Identities=22%  Similarity=0.319  Sum_probs=39.7

Q ss_pred             CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             881799788899998-8322247897899999999885898036236437--0227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNA-QPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD--EHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng-~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D--~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
                      +.++|+-.-   |+| +|||||+.+.   -.++|+ ...|++|..+-|.=  -=|-|. -+.++...-.+|.+.++.+.+
T Consensus        32 ~~~~Y~GfD---PTa~slHlGhlv~l---~kL~~f-Q~aGh~~ivLigd~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i  103 (401)
T COG0162          32 PLRVYIGFD---PTAPSLHLGHLVPL---MKLRRF-QDAGHKPIVLIGDATAMIGDPS-GKSEERKLLTRETVLENAETI  103 (401)
T ss_pred             CCEEEEEEC---CCCCCCCHHHHHHH---HHHHHH-HHCCCEEEEEECCCCEECCCCC-CCHHHHHHCCHHHHHHHHHHH
T ss_conf             944999537---89875336668999---999999-9879918999644402427988-888887530499999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|255764461|r   81 RDMAD   85 (511)
Q Consensus        81 ~~~~~   85 (511)
                      ++++.
T Consensus       104 ~~ql~  108 (401)
T COG0162         104 KKQLG  108 (401)
T ss_pred             HHHHC
T ss_conf             99962


No 111
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.65  E-value=0.022  Score=36.79  Aligned_cols=33  Identities=42%  Similarity=0.551  Sum_probs=21.8

Q ss_pred             HHCCCCCCC-CCCE--EECCCCCCHHHCCCCCCCCH
Q ss_conf             101232333-4303--30586010000022111000
Q gi|255764461|r  284 LPLPKKVFS-HGFI--LHKGEKISKSLGNVIDPIEV  316 (511)
Q Consensus       284 ~~~p~~i~~-~g~l--~~~G~KMSKS~GN~I~~~e~  316 (511)
                      .+.|+.++. .+-+  ..+|+|||||.||.|...|-
T Consensus       180 f~~P~~~i~~~~~~i~gldgkKMSKS~~n~I~L~D~  215 (328)
T PRK12556        180 FTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFAE  215 (328)
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             678643337654331089987655687881347689


No 112
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=92.50  E-value=0.36  Score=27.74  Aligned_cols=52  Identities=35%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             CCCHHCCCCCCCCHHCCHHHHHHHHHHH-----HCCCCCCCCCCEE-ECC-CCCCHHHCCCCCCCC
Q ss_conf             1100004564321000102477654331-----0123233343033-058-601000002211100
Q gi|255764461|r  257 PADLHVIGKDILRFHAIYWPAFLLSANL-----PLPKKVFSHGFIL-HKG-EKISKSLGNVIDPIE  315 (511)
Q Consensus       257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~-----~~p~~i~~~g~l~-~~G-~KMSKS~GN~I~~~e  315 (511)
                      .+++++.|-|. ||      -++.+.++     .-|...++.-.++ .+| +|||||.||+||..+
T Consensus       185 ~~~iqiGGsDQ-~g------Ni~~G~dL~r~~~~~~~~~lT~PLL~~~dG~~KmgKS~gnaIwLd~  243 (405)
T PRK13354        185 DADIELGGTDQ-WF------NILMGRDLQRKLGEEKQVGITMPLLEGLDGTEKMSKSLGNYIGLDE  243 (405)
T ss_pred             CCCEEEECHHH-HH------HHHHHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCEECCC
T ss_conf             88379950868-88------9997999999857898359960615788775532501278631479


No 113
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.47  E-value=0.047  Score=34.27  Aligned_cols=35  Identities=31%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             HHCCCCCCCC-CCEE-ECC-CCCCHHHCC-CCCCCCHHH
Q ss_conf             1012323334-3033-058-601000002-211100000
Q gi|255764461|r  284 LPLPKKVFSH-GFIL-HKG-EKISKSLGN-VIDPIEVIE  318 (511)
Q Consensus       284 ~~~p~~i~~~-g~l~-~~G-~KMSKS~GN-~I~~~e~l~  318 (511)
                      ++.|..++.- .++. ++| .|||||.+| +|...|--+
T Consensus       177 f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~~~  215 (314)
T COG0180         177 FPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDDPK  215 (314)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHH
T ss_conf             378600144777464789998666669998245049989


No 114
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=92.24  E-value=0.4  Score=27.43  Aligned_cols=52  Identities=37%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             CCCHHCCCCCCCCHHCCHHHHHHHHHHH-----HCCCCCCCCCCEE-ECCCC-CCHHHCCCCCCCC
Q ss_conf             1100004564321000102477654331-----0123233343033-05860-1000002211100
Q gi|255764461|r  257 PADLHVIGKDILRFHAIYWPAFLLSANL-----PLPKKVFSHGFIL-HKGEK-ISKSLGNVIDPIE  315 (511)
Q Consensus       257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~-----~~p~~i~~~g~l~-~~G~K-MSKS~GN~I~~~e  315 (511)
                      .+++++.|-|. ||      -++.+.++     .-|-..++.-.++ .+|+| ||||.||+||.++
T Consensus       181 ~~~lqiGGsDQ-wg------Ni~~G~dLir~~~~~~~~glT~PLLt~~dG~K~gsKS~gnaIwLd~  239 (402)
T PRK05912        181 NADLELGGTDQ-WF------NILVGRDLQRRYGQEPQFGLTMPLLTGLDGVKKMSKSLGNYIWLDE  239 (402)
T ss_pred             CCCEEEECHHH-HH------HHHHHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCEECCC
T ss_conf             03347730548-99------9998999999856898379984505778768435667998701789


No 115
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=91.86  E-value=0.075  Score=32.81  Aligned_cols=60  Identities=25%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             CCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-ECC-------CCCCHH-HCCCCCCCCHHH
Q ss_conf             11000045643210001024776543310123233343033-058-------601000-002211100000
Q gi|255764461|r  257 PADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKG-------EKISKS-LGNVIDPIEVIE  318 (511)
Q Consensus       257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~~G-------~KMSKS-~GN~I~~~e~l~  318 (511)
                      .+|+-+.|.|+..+|-+- --+....|++.|-.+. +-++. ++|       +||||| .+|.|...|--+
T Consensus       169 ~adi~~~G~DQ~~~~~L~-Rdia~rf~~~~p~~l~-~p~l~gl~g~~~~~~~~KMSkS~~~~~I~l~D~~~  237 (333)
T PRK08560        169 DVDIAVGGMDQRKAHMLA-REVLPKLGYKKPVAIH-TPLLTGLDGGGEVLAEIKMSKSKPGSAIFVHDSPE  237 (333)
T ss_pred             CCCCCCCCCCHHHHHHHH-HHHHHHCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHH
T ss_conf             799553154308999999-9999983999975752-57545687877779988678899999474158999


No 116
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.80  E-value=0.71  Score=25.58  Aligned_cols=52  Identities=27%  Similarity=0.373  Sum_probs=29.5

Q ss_pred             CCCHHCCCCCCCCHHCCHHHHHHHHHHH----HCCCCC-CCCCCEE-ECCCCCCHHHCCCCCCCC
Q ss_conf             1100004564321000102477654331----012323-3343033-058601000002211100
Q gi|255764461|r  257 PADLHVIGKDILRFHAIYWPAFLLSANL----PLPKKV-FSHGFIL-HKGEKISKSLGNVIDPIE  315 (511)
Q Consensus       257 ~~d~~~~G~Dii~Fh~i~~pa~l~~~~~----~~p~~i-~~~g~l~-~~G~KMSKS~GN~I~~~e  315 (511)
                      ..|+++.|-|.       |-.+++|.++    .-.+.+ +++-.|+ .+|.|||||.||.+|...
T Consensus       180 ~~dlq~GG~DQ-------~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~a~~~~s  237 (401)
T COG0162         180 NKDLQLGGSDQ-------WGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDS  237 (401)
T ss_pred             CCCHHCCCHHH-------HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCC
T ss_conf             45231187678-------99999999999980899728998355038988815666778677037


No 117
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=90.67  E-value=1.3  Score=23.57  Aligned_cols=57  Identities=12%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH
Q ss_conf             895565667899999999998775035899999999999999788654187012169999
Q gi|255764461|r  383 FTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPD  442 (511)
Q Consensus       383 ~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~  442 (511)
                      .++.++.++..+....+.+..+.++++.+..+..+++++...|.|.+..+   ..+++.+
T Consensus        30 ~~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~---Il~~~~~   86 (117)
T pfam05746        30 LEEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFHSFYNNCR---VLDEDDE   86 (117)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHH
T ss_conf             99999999998805299999999866869999999999999999997196---7489889


No 118
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=88.33  E-value=0.16  Score=30.37  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=43.2

Q ss_pred             HHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCC-CCC------CC--------HH-HHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             765433101232333430330586010000022-111------00--------00-002211121110000247873011
Q gi|255764461|r  278 FLLSANLPLPKKVFSHGFILHKGEKISKSLGNV-IDP------IE--------VI-EEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       278 ~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~-I~~------~e--------~l-~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
                      ++.++|.+.|.... .+.|..+|.||||+++-- |..      +|        +- ..|-|++++=|++..+....|..+
T Consensus       141 l~~aLg~~~P~~~h-~~~l~~~~~klSKR~~~~~i~~g~v~gwdDprl~Tl~~~rr~G~~peAi~n~l~~lG~s~~d~~~  219 (238)
T cd00807         141 LYEYLGWRKPEQIE-FGRLNLEYTVLSKRKLKKLVEEGEVEGWDDPRLPTLRGLRRRGITPEAIREFILEVGVSKADVTI  219 (238)
T ss_pred             HHHHCCCCCCCEEE-EEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf             99984999986788-75487999705461515402458636776754065999998799899999999997899788676


Q ss_pred             CCCCCC
Q ss_conf             122211
Q gi|255764461|r  342 DKDGLK  347 (511)
Q Consensus       342 s~~~~~  347 (511)
                      +++.+.
T Consensus       220 ~~~~le  225 (238)
T cd00807         220 SWAKLE  225 (238)
T ss_pred             CHHHHH
T ss_conf             399999


No 119
>pfam09190 DALR_2 DALR domain. This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=86.87  E-value=1.3  Score=23.54  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=25.8

Q ss_pred             HHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99877-5035899999999999999788654
Q gi|255764461|r  401 IRENM-QNQLIHRALAQVISLVSEVDRYFDA  430 (511)
Q Consensus       401 v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~  430 (511)
                      +.++| |.++.+.|+..++++++.+|++++.
T Consensus         2 F~~AMdDDfNTp~Ala~lfel~k~iN~~~~~   32 (62)
T pfam09190         2 FIEAMDDDFNTPEAIAVLFELAKEINRALNE   32 (62)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             5777651447599999999999999987054


No 120
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA.  Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=86.66  E-value=0.18  Score=30.07  Aligned_cols=69  Identities=22%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             HHHHHHHHCCCCCCCCCCE-EECCCCCCHHHCCCCCCCCHHHH-CCCCCCCHHHEEECCC-CC-CCEECCCCCCC
Q ss_conf             7654331012323334303-30586010000022111000000-2211121110000247-87-30111222111
Q gi|255764461|r  278 FLLSANLPLPKKVFSHGFI-LHKGEKISKSLGNVIDPIEVIEE-VGVDALRYFLVREIAC-GK-DGFYDKDGLKK  348 (511)
Q Consensus       278 ~l~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~I~~~e~l~~-~g~D~lR~~l~~~~~~-~~-D~~Fs~~~~~~  348 (511)
                      +..++|.+.|... .+..+ ..+|+||||..|. +...++-++ |.|++++=||+..+.. .. ...|+.++++.
T Consensus       138 l~~~Lg~~~P~f~-Hlpli~~~~g~kLSKR~~~-~si~~~r~~G~~Peai~n~l~~lG~s~~~~~e~~~~~eli~  210 (239)
T cd00808         138 LYEALGWEPPKFA-HLPLILNPDGKKLSKRHGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIE  210 (239)
T ss_pred             HHHHCCCCCCEEE-CCCCEECCCCCCCCCCCCH-HCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             9996489998032-6624268998977670872-16999998699879999999997599987644389999997


No 121
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=85.64  E-value=2.7  Score=21.32  Aligned_cols=49  Identities=12%  Similarity=0.240  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9556566789999999999877503589999999999999978865418
Q gi|255764461|r  384 TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQK  432 (511)
Q Consensus       384 ~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~  432 (511)
                      ++.++.++..+....+.+..+.++++.+..+..+++++...|.|.+..+
T Consensus        35 ~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~   83 (122)
T smart00836       35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCR   83 (122)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999997789999999976958999999999999999984384


No 122
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=84.44  E-value=2.3  Score=21.78  Aligned_cols=45  Identities=16%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             17997888999988322247897899999999885898036236437
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ||++.|+..+|..|+++|=+-.++  --++|.+.-+|++|..+|..|
T Consensus         2 kI~~v~~~~~p~pP~~~GG~e~~~--~~La~~L~~~Gh~V~v~~~~~   46 (335)
T cd03802           2 RIALVAPPREPVPPPAYGGTERVV--AALTEGLVARGHEVTLFASGD   46 (335)
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHH--HHHHHHHHHCCCEEEEEECCC
T ss_conf             869988840036999989799999--999999997699899996289


No 123
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=84.02  E-value=3.1  Score=20.82  Aligned_cols=85  Identities=14%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
Q ss_conf             213455653123---32103455589556566789999999999877503589999999999999978865418701216
Q gi|255764461|r  362 VSRSVSMILKDY---DGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKK  438 (511)
Q Consensus       362 ~~R~~~f~~k~~---~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k  438 (511)
                      .+|+...+.+.-   .+.+...--.++.++.+.+.+..+...+.+++..-+|..|+..+.++..-++.|++..-   ...
T Consensus       584 ~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~Vm---Vm~  660 (691)
T COG0751         584 NKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVM---VMA  660 (691)
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEC
T ss_conf             98999998734555677669678528899999999999777788887423599999999985426999856726---647


Q ss_pred             CCHHHHHHHHH
Q ss_conf             99999999999
Q gi|255764461|r  439 TNPDRASTVLY  449 (511)
Q Consensus       439 ~d~~~~~~vl~  449 (511)
                      +|..-.++-|.
T Consensus       661 eD~~iR~NRLa  671 (691)
T COG0751         661 EDEALRNNRLA  671 (691)
T ss_pred             CCHHHHHHHHH
T ss_conf             87899999999


No 124
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=83.78  E-value=3.2  Score=20.75  Aligned_cols=64  Identities=13%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHH
Q ss_conf             9556566789999999999877503589999999999999978865418701216999999999999
Q gi|255764461|r  384 TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYV  450 (511)
Q Consensus       384 ~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~  450 (511)
                      .+.++.+.+.+..+.+++..+++.-+|..++..+.++...+|.|++...   ...+|.+-..+-|.+
T Consensus       605 ~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~L~~L~~~Id~FFD~Vm---Vm~~d~~iR~NRL~L  668 (687)
T PRK01233        605 EDAEKALYEALQALRPAVQPAFAAGDYQAALEALAALRPPVDAFFDNVM---VMAEDEALRANRLAL  668 (687)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE---ECCCCHHHHHHHHHH
T ss_conf             9999999999999999999887543599999999974048999848897---738988999999999


No 125
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.10  E-value=2.8  Score=21.13  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99883222478978999999998858980362364370227999999983999899999999999999998088988674
Q gi|255764461|r   16 PNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFI   95 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~   95 (511)
                      +-|+.|      -+...++++.++..|++|.|.-               .+++|+++++.-.+.   .-+.+++|.    
T Consensus         7 v~gD~H------~iG~~iv~~~l~~~G~~V~~lG---------------~~vp~e~~v~~a~~~---~~d~I~lS~----   58 (119)
T cd02067           7 VGGDGH------DIGKNIVARALRDAGFEVIDLG---------------VDVPPEEIVEAAKEE---DADAIGLSG----   58 (119)
T ss_pred             CCCCHH------HHHHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHHC---CCCEEEEEC----
T ss_conf             398567------7899999999997899899899---------------999999999999970---999999962----


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             77888899999999888754310
Q gi|255764461|r   96 RTTEKRHHDTCRILWKKISDKGD  118 (511)
Q Consensus        96 rT~~~~~~~~~~~~~~~l~~~G~  118 (511)
                        +...|...++++.+.|.++|.
T Consensus        59 --~~~~~~~~~~~~i~~l~~~g~   79 (119)
T cd02067          59 --LLTTHMTLMKEVIEELKEAGL   79 (119)
T ss_pred             --CCCCCHHHHHHHHHHHHHCCC
T ss_conf             --202426899999999997699


No 126
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=81.77  E-value=0.56  Score=26.31  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             CCCCCCCCHHCC---HHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCHHHCC-CCCCCCHHHHCCCCCCCHHH
Q ss_conf             045643210001---024776543310123233343033-058601000002-21110000002211121110
Q gi|255764461|r  262 VIGKDILRFHAI---YWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGN-VIDPIEVIEEVGVDALRYFL  329 (511)
Q Consensus       262 ~~G~Dii~Fh~i---~~pa~l~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN-~I~~~e~l~~~g~D~lR~~l  329 (511)
                      ..|.|.-++.-+   +=|-|...+|+..|-.+. |-|+. +.|.|||.|.+| +|...|--+..- .-+++++
T Consensus       210 P~giDQDP~fRltRDiA~r~~~~lg~~kPa~ih-~~flpgL~G~KMSsS~p~saI~ltDtp~~ik-kKIk~Af  280 (369)
T PRK12285        210 PVGIDQDPHIRLTRDIAERMRISLGFIKPASTY-HKFMTGLTGGKMSSSKPESAIYLTDDPETAK-KKIKNAL  280 (369)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH-CCCCCCCCCCCCCCCCCCCEEEECCCHHHHH-HHHHHHH
T ss_conf             403454468899998888740114888727775-1145677889876899985368508999999-9999854


No 127
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=81.40  E-value=3.9  Score=20.13  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=23.8

Q ss_pred             HHHHHH-HCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998775-0358999999999999997886
Q gi|255764461|r  401 IRENMQ-NQLIHRALAQVISLVSEVDRYF  428 (511)
Q Consensus       401 v~~a~e-~~~~~~Al~~i~~l~~~~N~yi  428 (511)
                      +.++|+ .++.+.|+..++++++.+|+..
T Consensus         2 F~~AMdDDfNTp~Ala~lfel~k~~N~~~   30 (56)
T smart00840        2 FEEAMDDDFNTPEALAVLFELAREINRLL   30 (56)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             47775442475999999999999999864


No 128
>PRK09620 hypothetical protein; Provisional
Probab=80.12  E-value=3.3  Score=20.68  Aligned_cols=48  Identities=17%  Similarity=0.172  Sum_probs=37.1

Q ss_pred             CCEEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             88179978889999-88-32224789789999999988589803623643
Q gi|255764461|r    4 REKLYISTAIAYPN-AQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGT   51 (511)
Q Consensus         4 ~~~~~vt~~~Py~n-g~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~   51 (511)
                      -||++||+.+-+-. .| -.|++..+=-++=.+||....+|.+|.+++|.
T Consensus         3 GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli~g~   52 (229)
T PRK09620          3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY   52 (229)
T ss_pred             CCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             98999958887566688456277682399999999999779979999458


No 129
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=79.05  E-value=2.3  Score=21.86  Aligned_cols=121  Identities=17%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             EEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf             33058601000002211100000022111211100002478730111222111001332110221021345565312332
Q gi|255764461|r  296 ILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDG  375 (511)
Q Consensus       296 l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g  375 (511)
                      +..+-++|+.+--|+.-  -.+|+=+.+++ +.|.+..+         +.+...+           .|||........+.
T Consensus        94 II~~Ae~Mt~~AANALL--KtLEEPp~nt~-fIL~t~~~---------~~LLPTI-----------rSRC~~~~~~~~~~  150 (262)
T PRK05818         94 IIYGIEKLNKQSANSLL--KLIEEPPKNTY-GIFTTRNE---------NNILNTI-----------LSRCVQYVVLSKEK  150 (262)
T ss_pred             EECCHHHHCHHHHHHHH--HHHCCCCCCEE-EEEEECCH---------HHCCCHH-----------HHHCCCCCCCCHHH
T ss_conf             98777874999999999--86128987838-99973881---------4373088-----------87701446664346


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             1034555895565667899999999998775035899999999999999788654187012169
Q gi|255764461|r  376 MIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKT  439 (511)
Q Consensus       376 ~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~  439 (511)
                      +++.....+......+..-...+.++.+++++-.+++++..+..++...|+.++..+-|++-++
T Consensus       151 ~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~n~~~~~~~~~~l~~~  214 (262)
T PRK05818        151 KVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKT  214 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHC
T ss_conf             6788887408889876410110799998861676888999999998756884339999999831


No 130
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=79.04  E-value=4.6  Score=19.59  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999877-503589999999999999978865
Q gi|255764461|r  396 RVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFD  429 (511)
Q Consensus       396 ~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~  429 (511)
                      ...+++.++| +.++++.|+..++++++.+|+..+
T Consensus        33 ~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~~~   67 (156)
T cd07963          33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKK   67 (156)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             89999999987634879999999999999998604


No 131
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=76.29  E-value=5.4  Score=19.05  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999998858980362364370227999999983999899999999999999998088988674778888999999998
Q gi|255764461|r   31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILW  110 (511)
Q Consensus        31 ~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~  110 (511)
                      +-+++|.++..|++|.|.-               ...||+|+++.-.+   +.-+..++|-      ..-.|...++++.
T Consensus        16 ~~iva~~l~d~GfeVi~lG---------------~~~s~eeiv~~A~~---e~ad~IglSs------L~g~h~~~~~~l~   71 (122)
T cd02071          16 AKVIARALRDAGFEVIYTG---------------LRQTPEEIVEAAIQ---EDVDVIGLSS------LSGGHMTLFPEVI   71 (122)
T ss_pred             HHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHH---CCCCEEEEEC------CCCCHHHHHHHHH
T ss_conf             9999999997897699679---------------98899999999997---3998999964------6554478999999


Q ss_pred             HHHHHHHC
Q ss_conf             88754310
Q gi|255764461|r  111 KKISDKGD  118 (511)
Q Consensus       111 ~~l~~~G~  118 (511)
                      ..|.++|.
T Consensus        72 ~~L~e~G~   79 (122)
T cd02071          72 ELLRELGA   79 (122)
T ss_pred             HHHHHCCC
T ss_conf             99997699


No 132
>KOG2144 consensus
Probab=75.81  E-value=1.1  Score=24.06  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=33.5

Q ss_pred             CCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEE-E-CCCCCCHHHCCC-CCC
Q ss_conf             4310002411000045643210001024776543310123233343033-0-586010000022-111
Q gi|255764461|r  249 DGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-H-KGEKISKSLGNV-IDP  313 (511)
Q Consensus       249 ~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p~~i~~~g~l~-~-~G~KMSKS~GN~-I~~  313 (511)
                      ...++.|...|++|.|-|.-.-.++ =--.|-.+|++ -+-++.|.||- + .|+|||+|--+. |+.
T Consensus       169 QalDe~~L~vD~qfgGvDQRKIf~~-A~eylp~l~yk-KrihLmnpMvPGL~q~~KMSsSd~~SkIdl  234 (360)
T KOG2144         169 QALDEFYLEVDAQFGGVDQRKIFVL-AEEYLPDLGYK-KRIHLMNPMVPGLAQGEKMSSSDPLSKIDL  234 (360)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7766998730377548119999999-99861541766-552323777855344576666785232311


No 133
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry contains a number of enzyme families:  Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase    All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=75.50  E-value=5.7  Score=18.91  Aligned_cols=15  Identities=0%  Similarity=-0.035  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999980
Q gi|255764461|r   73 VDQNSRNFRDMADVL   87 (511)
Q Consensus        73 ~~~~~~~~~~~~~~~   87 (511)
                      +-++|+++++.+.+|
T Consensus        76 Tl~lH~eLE~~LA~F   90 (392)
T TIGR01825        76 TLELHEELEEKLAKF   90 (392)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             778999999998755


No 134
>KOG2145 consensus
Probab=73.22  E-value=2.9  Score=21.10  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=25.8

Q ss_pred             HHHCCCCCCCCCCEEEC--CCCCCHHHCCC-CCCCCHHHHCCCCCCCHHH
Q ss_conf             31012323334303305--86010000022-1110000002211121110
Q gi|255764461|r  283 NLPLPKKVFSHGFILHK--GEKISKSLGNV-IDPIEVIEEVGVDALRYFL  329 (511)
Q Consensus       283 ~~~~p~~i~~~g~l~~~--G~KMSKS~GN~-I~~~e~l~~~g~D~lR~~l  329 (511)
                      |++-|--+...-|=.+.  ..|||-|--|. |...|..++.---+.||.+
T Consensus       257 g~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~af  306 (397)
T KOG2145         257 GYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAF  306 (397)
T ss_pred             CCCCCCEEEHHHCHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHC
T ss_conf             89984210011021210754455567997437862758999999988631


No 135
>pfam06940 DUF1287 Domain of unknown function (DUF1287). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. This family is related to pfam00877.
Probab=72.95  E-value=2.7  Score=21.31  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             89999883222478978999999998858980
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLD   44 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~   44 (511)
                      ++||||+.-.+.-.+.   ||+.|..|..|++
T Consensus        22 ~~YP~GDvp~~~GVCT---DVViRA~R~~g~D   50 (164)
T pfam06940        22 LGYPGGDVPLNTGVCT---DVVIRAYRDQGYD   50 (164)
T ss_pred             CCCCCCCCCCCCCCCH---HHHHHHHHHCCCC
T ss_conf             4899998887767428---8999999984976


No 136
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=72.91  E-value=6.5  Score=18.47  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC
Q ss_conf             799999998399989999999-9999999998088
Q gi|255764461|r   56 QKIAKAAQNAGVTTKVFVDQN-SRNFRDMADVLDI   89 (511)
Q Consensus        56 ~~i~~~A~~~g~~p~e~~~~~-~~~~~~~~~~~~i   89 (511)
                      ..+..++...|.+|.++.++. ...+.+.-+.+.-
T Consensus        14 ~~~v~~~l~~G~~~~~i~~~~l~pam~~vG~~w~~   48 (201)
T cd02070          14 VELVKKALEAGIDPQDIIEEGLAPGMDIVGDKYEE   48 (201)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999869998999999899999999999838


No 137
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=72.61  E-value=6.5  Score=18.44  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=27.1

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             817997888999988322247897899999999885898036236437
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ||+++++.   -+|    ||..+.+.   ++..++.+|++|+|++...
T Consensus         2 kkI~i~~G---GTG----GHi~Pala---la~~L~~~g~ev~~ig~~~   39 (359)
T PRK00726          2 KKILLAGG---GTG----GHVFPALA---LAEELKKRGWEVLWLGTKR   39 (359)
T ss_pred             CEEEEEEC---CCH----HHHHHHHH---HHHHHHHCCCEEEEEECCC
T ss_conf             88999958---868----99999999---9999983879899997882


No 138
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.48  E-value=6.4  Score=18.54  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             88817997888999988322247897899999999885898036236437022799999998399989999999999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD   82 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~   82 (511)
                      .|+|++|.+    +-++.|   -   +.+.+++|.++-.|++|.+.-               ...+|+++++..   ..+
T Consensus         2 rr~~vvi~~----~g~D~H---d---~G~~iva~~l~~~GfeVi~lG---------------~~~~pe~~v~~A---~~~   53 (137)
T PRK02261          2 KKPTVVLGV----IGADCH---A---VGNKILDRALTEAGFEVINLG---------------VMTSQEEFIDAA---IET   53 (137)
T ss_pred             CCCEEEEEE----ECCCHH---H---HHHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHH---HHC
T ss_conf             988799982----188611---7---889999999997897498468---------------879999999999---873


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             999808898867477888899999999888754310
Q gi|255764461|r   83 MADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGD  118 (511)
Q Consensus        83 ~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~  118 (511)
                      .-+..++|-      .+-.|....+.+...|.+.|.
T Consensus        54 ~ad~igiSs------l~G~~~~~~~~l~~~l~~~g~   83 (137)
T PRK02261         54 DADAILVSS------LYGHGEIDCRGLREKCIEAGL   83 (137)
T ss_pred             CCCEEEECC------CCCCCCHHHHHHHHHHHHCCC
T ss_conf             999999711------112661279999999996799


No 139
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=70.99  E-value=7.1  Score=18.16  Aligned_cols=75  Identities=11%  Similarity=0.149  Sum_probs=37.3

Q ss_pred             CCEEEEECCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             881799788899998832224-7897899999999885898036-23643702279999999839998999999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGH-AYEMIIADVLARFHRLDGLDVL-FTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH-~~~~i~~D~~~R~~r~~G~~v~-~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      .+++|+-+.   |+|.+|||+ +.+.+-   ++++++. |-+|. ++.+|=.  .  ..  .|.|- +-+.+....+.++
T Consensus        82 ~P~cY~Gfe---PSGr~Hig~g~v~~ik---vn~l~~A-Gc~v~illADwhA--~--LN--nKmgg-dlekIr~~~~Y~~  147 (399)
T PTZ00126         82 YPICYDGFE---PSGRMHIAQGLLKAIN---VNKLTKA-GCTFVFWIADWFA--M--LN--NKMGG-DLKKIKKVGEYFI  147 (399)
T ss_pred             CCEEEECCC---CCCCCCHHHHHHHHHH---HHHHHHC-CCEEEEEEEHHHH--H--HC--CCCCC-CHHHHHHHHHHHH
T ss_conf             986986747---8898610546788999---9999978-9979999742468--7--56--76799-9999999999999


Q ss_pred             HHHHHHCCCCC
Q ss_conf             99998088988
Q gi|255764461|r   82 DMADVLDISYD   92 (511)
Q Consensus        82 ~~~~~~~i~~D   92 (511)
                      +.|++.|++.|
T Consensus       148 ev~kA~Gm~~d  158 (399)
T PTZ00126        148 HVWKAAGMNME  158 (399)
T ss_pred             HHHHHCCCCCC
T ss_conf             99998599824


No 140
>cd02167 NMNAT_NadR The NMNAT domain of NadR protein. The NadR protein (hiNadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=70.19  E-value=5.1  Score=19.24  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             88322247897899999999885898036236437-02279999999839998999999999999
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD-EHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D-~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      .|||+||.      +++.|.+++--.=...||+.+ ++|        +.+++.+.-..-+.+.|.
T Consensus         8 ~P~H~GH~------~lI~~A~~~~d~l~Vvv~~~~~~~~--------~~~i~~~~R~rWl~~~f~   58 (157)
T cd02167           8 APLHTGHQ------YLIYTAAAQVDELHVIVSGDPEEDG--------QIGITLEDRLRWLREAFP   58 (157)
T ss_pred             CCCCCCHH------HHHHHHHHHCCEEEEEEECCCCCCC--------CCCCCHHHHHHHHHHHCC
T ss_conf             79973789------9999999868969999847886555--------668999999999999779


No 141
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=70.14  E-value=7.4  Score=18.06  Aligned_cols=65  Identities=18%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999885898036236437022799999998399989999999999999999808898867477888899999999
Q gi|255764461|r   30 IADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRIL  109 (511)
Q Consensus        30 ~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~  109 (511)
                      ...+++|.++-.|++|.+.-               ...+|+++++...+.   .-+..++|-      ..-.|....+.+
T Consensus        15 G~~iva~~l~~~GfeVi~lG---------------~~~~~e~~~~~a~e~---~ad~i~vSs------l~g~~~~~~~~l   70 (128)
T cd02072          15 GNKILDHAFTEAGFNVVNLG---------------VLSPQEEFIDAAIET---DADAILVSS------LYGHGEIDCKGL   70 (128)
T ss_pred             HHHHHHHHHHHCCCEEEECC---------------CCCCHHHHHHHHHHC---CCCEEEECC------CCCCCCHHHHHH
T ss_conf             89999999997897298479---------------889999999999873---999999823------202562489999


Q ss_pred             HHHHHHHHC
Q ss_conf             888754310
Q gi|255764461|r  110 WKKISDKGD  118 (511)
Q Consensus       110 ~~~l~~~G~  118 (511)
                      .+.|.++|.
T Consensus        71 ~~~L~e~G~   79 (128)
T cd02072          71 REKCDEAGL   79 (128)
T ss_pred             HHHHHHCCC
T ss_conf             999996799


No 142
>pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.
Probab=69.93  E-value=7.5  Score=18.01  Aligned_cols=49  Identities=12%  Similarity=0.129  Sum_probs=36.3

Q ss_pred             CCEEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             88179978889999-88-322247897899999999885898036236437
Q gi|255764461|r    4 REKLYISTAIAYPN-AQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         4 ~~~~~vt~~~Py~n-g~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      -|+++||+.+-+-. .+ -.|++.-+=-++-.+|+..+.+|.+|.+++|--
T Consensus         2 gk~vlITaG~T~E~ID~VR~ItN~SSGkmG~alA~~~~~~Ga~V~li~g~~   52 (197)
T pfam04127         2 GRRVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLIAGKG   52 (197)
T ss_pred             CCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             989999368864443883153626955999999999997899389972356


No 143
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773    Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=68.99  E-value=3.5  Score=20.49  Aligned_cols=11  Identities=18%  Similarity=0.507  Sum_probs=4.0

Q ss_pred             CCCCCCCCCCC
Q ss_conf             44444344433
Q gi|255764461|r  171 AYQDKLLSYYE  181 (511)
Q Consensus       171 ~~~~~l~~~~~  181 (511)
                      +++++|.+|+.
T Consensus        55 ~~K~~L~~Yl~   65 (413)
T TIGR02407        55 KLKQALIDYLA   65 (413)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 144
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=67.27  E-value=8.4  Score=17.63  Aligned_cols=46  Identities=15%  Similarity=0.136  Sum_probs=33.8

Q ss_pred             EEEEECCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             179978889999-88-32224789789999999988589803623643
Q gi|255764461|r    6 KLYISTAIAYPN-AQ-PHIGHAYEMIIADVLARFHRLDGLDVLFTTGT   51 (511)
Q Consensus         6 ~~~vt~~~Py~n-g~-lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~   51 (511)
                      |++||+++-+-. .+ --|++.-+=-++-.+|++...+|++|.+++|-
T Consensus         2 kvLITaG~T~E~ID~VR~IsN~SSGk~G~aiA~~~~~~Ga~Vtli~g~   49 (228)
T PRK06732          2 KILITSGGTTEPIDAVRGITNHSTGQLGKIIAETFLQAGHEVTLVTTK   49 (228)
T ss_pred             EEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             899957887667688447676781499999999999789989999567


No 145
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=67.03  E-value=8.5  Score=17.59  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf             89999999999999999808898-8674
Q gi|255764461|r   69 TKVFVDQNSRNFRDMADVLDISY-DDFI   95 (511)
Q Consensus        69 p~e~~~~~~~~~~~~~~~~~i~~-D~~~   95 (511)
                      |.+--+++...+.+++++++.++ |.|.
T Consensus        88 ~~~~~edm~r~fneqLekl~~Dy~D~yl  115 (391)
T COG1453          88 PVKDREDMERIFNEQLEKLGTDYIDYYL  115 (391)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             3447999999999999984886101020


No 146
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=65.19  E-value=9.2  Score=17.35  Aligned_cols=13  Identities=15%  Similarity=0.194  Sum_probs=5.6

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             3999899999999
Q gi|255764461|r   65 AGVTTKVFVDQNS   77 (511)
Q Consensus        65 ~g~~p~e~~~~~~   77 (511)
                      .|++|++-+....
T Consensus        24 ~g~~~e~aAa~iA   36 (412)
T TIGR03326        24 EGVSIEDAAGRVA   36 (412)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9989999999987


No 147
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=61.81  E-value=8.3  Score=17.68  Aligned_cols=47  Identities=17%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             HHHHHHHCCCCEEE--------------CCCCCCCCHHHHHHHH------HCCCCHHHHHHHHHHHH
Q ss_conf             99998858980362--------------3643702279999999------83999899999999999
Q gi|255764461|r   34 LARFHRLDGLDVLF--------------TTGTDEHGQKIAKAAQ------NAGVTTKVFVDQNSRNF   80 (511)
Q Consensus        34 ~~R~~r~~G~~v~~--------------~~g~D~hg~~i~~~A~------~~g~~p~e~~~~~~~~~   80 (511)
                      +..|++.+||+|.-              +||-|.+=.-|+....      ..|.||+|++.+..+..
T Consensus        13 v~e~L~~~Gy~Vv~l~~~~~~~~~da~VitG~d~N~mGi~d~~t~~pVI~A~G~TaeEI~~~ve~rl   79 (80)
T pfam03698        13 IEEALKEKGYEVVRLKNEQDAQGCDACVVTGLDSNMMGIEDTVTKAPVIDASGLTAEEICQEVEERL   79 (80)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf             9999997798788678703256658899958986521441334568748668999999999999860


No 148
>KOG2713 consensus
Probab=61.51  E-value=11  Score=16.88  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             17997888999988322247897899999999885--8980362364370227999999983999899999999999999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRL--DGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDM   83 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~--~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~   83 (511)
                      +.+++.--|+  |.+|||+-.+.+-  .|++-+..  +|-.|+| +=.|-|       |.-...+|. .-.+.+-.+...
T Consensus        14 ~rvfSGIQPT--G~~HLGNYLGai~--~Wv~LQ~~~d~~~~~~f-~vvDlH-------aITvp~dp~-~lrq~~~dm~A~   80 (347)
T KOG2713          14 KRVFSGIQPT--GIPHLGNYLGAIK--PWVQLQNEYDKNILVLF-SVVDLH-------AITVPQDPA-ELRQATHDMAAS   80 (347)
T ss_pred             CEEEECCCCC--CCCHHHHHHHHHH--HHHHHHHHHCCCCEEEE-EEEECE-------EECCCCCHH-HHHHHHHHHHHH
T ss_conf             3467426778--8721443542536--89999887537862799-986110-------012799848-998889999999


Q ss_pred             HHHHCCCCC---CCCCCCCHHHHHHH
Q ss_conf             998088988---67477888899999
Q gi|255764461|r   84 ADVLDISYD---DFIRTTEKRHHDTC  106 (511)
Q Consensus        84 ~~~~~i~~D---~~~rT~~~~~~~~~  106 (511)
                      +-+.||++.   .|....-|+|-++.
T Consensus        81 lLAcGIdp~Ks~lF~QS~Vpqh~el~  106 (347)
T KOG2713          81 LLACGIDPEKSSLFVQSDVPQHAELS  106 (347)
T ss_pred             HHHHCCCCCCCEEEEECCCHHHHHHH
T ss_conf             99835682222166402435888999


No 149
>pfam05559 DUF763 Protein of unknown function (DUF763). This family consists of several uncharacterized bacterial and archaeal proteins of unknown function.
Probab=61.43  E-value=8.4  Score=17.63  Aligned_cols=15  Identities=20%  Similarity=0.233  Sum_probs=10.9

Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             998832224789789
Q gi|255764461|r   16 PNAQPHIGHAYEMII   30 (511)
Q Consensus        16 ~ng~lHlGH~~~~i~   30 (511)
                      ++=|||=||+=+++.
T Consensus         3 adLPLH~G~vP~WL~   17 (319)
T pfam05559         3 ADLPLHGGHVPPWLA   17 (319)
T ss_pred             CCCCCCCCCCCHHHH
T ss_conf             777887998986899


No 150
>PRK03094 hypothetical protein; Provisional
Probab=61.32  E-value=6.7  Score=18.39  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=27.0

Q ss_pred             HHHHHHHCCCCEEE--------------CCCCCCCCHHHHHHHH------HCCCCHHHHHHHHHHHH
Q ss_conf             99998858980362--------------3643702279999999------83999899999999999
Q gi|255764461|r   34 LARFHRLDGLDVLF--------------TTGTDEHGQKIAKAAQ------NAGVTTKVFVDQNSRNF   80 (511)
Q Consensus        34 ~~R~~r~~G~~v~~--------------~~g~D~hg~~i~~~A~------~~g~~p~e~~~~~~~~~   80 (511)
                      +..|++.+||+|.-              +||-|.+=.=|+..+.      ..|.||+|++.+..+..
T Consensus        13 v~~~L~~~GY~Vv~l~~~~~a~~~Da~ViTG~d~N~mGiqd~~t~~pVI~A~GlTaeEI~~~ve~r~   79 (80)
T PRK03094         13 VQQALKQKGYEVVTLNSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRT   79 (80)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf             9999997798789668714335678899958976522644134568748678999999999999861


No 151
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=60.31  E-value=5.2  Score=19.16  Aligned_cols=11  Identities=27%  Similarity=0.480  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHC
Q ss_conf             48999999984
Q gi|255764461|r  467 PKLANKIFDIL  477 (511)
Q Consensus       467 P~~ae~i~~~L  477 (511)
                      |..++.|.+.+
T Consensus       367 PEV~~vl~k~~  377 (397)
T COG2046         367 PEVADVLRKSL  377 (397)
T ss_pred             HHHHHHHHHHC
T ss_conf             88999998732


No 152
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology.  The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=59.71  E-value=11  Score=16.67  Aligned_cols=37  Identities=27%  Similarity=0.446  Sum_probs=24.7

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             17997888999988322247897899999999885898036236437
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      |++|++.   -+|    ||..+-+   .+++.++.+|++|.|++..+
T Consensus         1 ki~i~~G---GTG----GHi~Pal---ala~~L~~~g~~V~~i~~~~   37 (350)
T cd03785           1 RILIAGG---GTG----GHIFPAL---ALAEELRERGAEVLFLGTKR   37 (350)
T ss_pred             CEEEEEC---CCH----HHHHHHH---HHHHHHHHCCCEEEEEECCC
T ss_conf             9899947---858----9999999---99999997879899998783


No 153
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=57.75  E-value=12  Score=16.44  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=12.0

Q ss_pred             HHHHHCCCHHHHHHHH-HHHCC
Q ss_conf             9998543224899999-99849
Q gi|255764461|r  458 LAILLQAFVPKLANKI-FDILF  478 (511)
Q Consensus       458 l~ilL~Pi~P~~ae~i-~~~Lg  478 (511)
                      ++.++-|++|.++-+| |-+|-
T Consensus       717 ~a~~~~~~~Pl~p~qiL~~Nli  738 (900)
T PRK10517        717 VASAFLPFLPMLPLHLLIQNLL  738 (900)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9999706440679999999998


No 154
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.35  E-value=12  Score=16.39  Aligned_cols=82  Identities=21%  Similarity=0.222  Sum_probs=46.5

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             88817997888999988322247897899999999885898036236437022799999998399989999999999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD   82 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~   82 (511)
                      .|+|++|-.+     |  -=||-++   +.+++|-++-.|++|.+.....               ||+|.++.-   +++
T Consensus        11 ~rprvlvak~-----G--lDgHd~g---akvia~~l~d~GfeVi~~g~~~---------------tp~e~v~aA---~~~   62 (143)
T COG2185          11 ARPRVLVAKL-----G--LDGHDRG---AKVIARALADAGFEVINLGLFQ---------------TPEEAVRAA---VEE   62 (143)
T ss_pred             CCCEEEEECC-----C--CCCCCCC---HHHHHHHHHHCCCEEEECCCCC---------------CHHHHHHHH---HHC
T ss_conf             9866999536-----7--6544313---1999999985793798158758---------------999999999---864


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             999808898867477888899999999888754310
Q gi|255764461|r   83 MADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGD  118 (511)
Q Consensus        83 ~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~  118 (511)
                      +-...++|-      .+-.|...+..+.+.|.++|.
T Consensus        63 dv~vIgvSs------l~g~h~~l~~~lve~lre~G~   92 (143)
T COG2185          63 DVDVIGVSS------LDGGHLTLVPGLVEALREAGV   92 (143)
T ss_pred             CCCEEEEEE------CCCHHHHHHHHHHHHHHHHCC
T ss_conf             798899973------440478999999999998197


No 155
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=56.37  E-value=8.5  Score=17.59  Aligned_cols=22  Identities=32%  Similarity=0.134  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             247897899999999885898036236
Q gi|255764461|r   23 GHAYEMIIADVLARFHRLDGLDVLFTT   49 (511)
Q Consensus        23 GH~~~~i~~D~~~R~~r~~G~~v~~~~   49 (511)
                      |||+.-.. -    .....|..|..++
T Consensus         8 GhAG~EAA-~----aaAr~G~~v~Lit   29 (391)
T pfam01134         8 GHAGCEAA-L----AAARMGAKVLLIT   29 (391)
T ss_pred             CHHHHHHH-H----HHHHCCCCEEEEE
T ss_conf             78999999-9----9986899689997


No 156
>TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'; InterPro: IPR012758   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.    This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0008270 zinc ion binding, 0006350 transcription.
Probab=56.03  E-value=13  Score=16.24  Aligned_cols=39  Identities=31%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             CCCCCCEE---ECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             33343033---05860100000221110000002211121110
Q gi|255764461|r  290 VFSHGFIL---HKGEKISKSLGNVIDPIEVIEEVGVDALRYFL  329 (511)
Q Consensus       290 i~~~g~l~---~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l  329 (511)
                      |+.||-|+   +|-+=.+--.||-|. ..++.+||++.-|.||
T Consensus       615 VI~NG~Ll~GViDk~a~G~e~g~~il-~~i~~~yG~e~ar~~l  656 (901)
T TIGR02390       615 VIKNGKLLKGVIDKKAIGAEKGDKIL-DRIVREYGPEAARRFL  656 (901)
T ss_pred             EEECCEEEEEECCHHHCCCCCHHHHH-HHHHHHHCCHHHHHHH
T ss_conf             98668043203020112746637899-9998760746899999


No 157
>COG3911 Predicted ATPase [General function prediction only]
Probab=54.37  E-value=14  Score=16.05  Aligned_cols=18  Identities=17%  Similarity=0.163  Sum_probs=8.3

Q ss_pred             HHHHHHCCCCEEECCCCC
Q ss_conf             999885898036236437
Q gi|255764461|r   35 ARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus        35 ~R~~r~~G~~v~~~~g~D   52 (511)
                      -+-++-+|+-+.-..|.|
T Consensus        26 L~aLa~~Gfatvee~~r~   43 (183)
T COG3911          26 LAALARAGFATVEEAGRD   43 (183)
T ss_pred             HHHHHHCCCEEECCCHHH
T ss_conf             999997586350134166


No 158
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=51.97  E-value=15  Score=15.79  Aligned_cols=109  Identities=13%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CCCCCEEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC--CHHHHHH-
Q ss_conf             988881799---7888999988322247897899999999885898036236437022799999998399--9899999-
Q gi|255764461|r    1 MKEREKLYI---STAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV--TTKVFVD-   74 (511)
Q Consensus         1 m~~~~~~~v---t~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~--~p~e~~~-   74 (511)
                      |++.||+.|   |+-+-.++|.+..+-+...+  +.++ .++.+|++|..||--     .|..-...+|.  .|.++.+ 
T Consensus         5 ~~~~krIVIKiGSs~Lt~~~g~l~~~~i~~l~--~~I~-~L~~~G~evilVSSG-----AIa~G~~~L~~~~rp~~l~~~   76 (372)
T PRK05429          5 LSDARRIVVKVGSSLLTDDGGGLDRARIAELA--RQIA-ALRAAGHEVVLVSSG-----AVAAGRSRLGLPKRPKTLAEK   76 (372)
T ss_pred             HCCCCEEEEECCCCEEECCCCCCCHHHHHHHH--HHHH-HHHHCCCEEEEECCH-----HHHHHHHHCCCCCCCCCHHHH
T ss_conf             51287899991743368988888899999999--9999-999789999998840-----798627760999885637788


Q ss_pred             ---------HHHHHHHHHHHHHCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             ---------999999999998088-------9886747788889999999988875431022
Q gi|255764461|r   75 ---------QNSRNFRDMADVLDI-------SYDDFIRTTEKRHHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        75 ---------~~~~~~~~~~~~~~i-------~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy  120 (511)
                               +..+.+.+.|..+|+       +.|.|   .+..++.-++..+..|.+.|.|-
T Consensus        77 QA~AAvGQ~~Lm~~Y~~~f~~~~~~~aQiLlT~~D~---~~r~rylN~r~tl~~Ll~~gvIP  135 (372)
T PRK05429         77 QAAAAVGQSRLMQAYEELFARYGITVAQILLTRDDL---SDRERYLNARATLRTLLELGVVP  135 (372)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCHHHH---CCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             899871569999999999986398557886266564---04589999999999998779600


No 159
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490; InterPro: IPR006385   This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase. Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the proteins in this family possess PSPase activity. .
Probab=51.19  E-value=15  Score=15.70  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=10.5

Q ss_pred             CCHHHHCCCCCCCHHHEEECCCCCCCEEC
Q ss_conf             00000022111211100002478730111
Q gi|255764461|r  314 IEVIEEVGVDALRYFLVREIACGKDGFYD  342 (511)
Q Consensus       314 ~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs  342 (511)
                      ..+.+.+|.|.+.   +...+..+|.-|+
T Consensus       120 ~~~A~~~G~~~~~---g~~~~~~~dG~~t  145 (204)
T TIGR01490       120 KPLARKLGIDNAI---GTRLEEAEDGIYT  145 (204)
T ss_pred             HHHHHHCCCCEEE---EEEEEEECCCEEE
T ss_conf             9999871866030---1200210277055


No 160
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.81  E-value=6.7  Score=18.36  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             CCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCH
Q ss_conf             3033058601000002211100000022111211
Q gi|255764461|r  294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRY  327 (511)
Q Consensus       294 g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~  327 (511)
                      .+|-+||+|||+|+.-.-+-.++=+.-.-=++|+
T Consensus        30 DlLvvdG~K~SgsLlk~k~~iel~~g~hQiVfRv   63 (216)
T COG3110          30 DLLVVDGKKVSGSLLKGKDSIELDDGPHQIVFRV   63 (216)
T ss_pred             CEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEE
T ss_conf             0899628645541005741035468970699998


No 161
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=49.47  E-value=16  Score=15.52  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=10.8

Q ss_pred             HCCCCEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf             58980362364370227999999983999
Q gi|255764461|r   40 LDGLDVLFTTGTDEHGQKIAKAAQNAGVT   68 (511)
Q Consensus        40 ~~G~~v~~~~g~D~hg~~i~~~A~~~g~~   68 (511)
                      ..|.+|..+||.+.  ..+..+|+++|+.
T Consensus        65 ~~Gi~v~iISg~~s--~~v~~Ra~~Lgi~   91 (186)
T PRK09484         65 TSGIEVAIITGRKS--KIVEDRMTTLGIT   91 (186)
T ss_pred             HCCCEEEEEECCCC--HHHHHHHHHHCCC
T ss_conf             87996999947888--8999999961898


No 162
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=49.42  E-value=16  Score=15.51  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=26.9

Q ss_pred             HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHH
Q ss_conf             9999885898036236437022799999998399989
Q gi|255764461|r   34 LARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTK   70 (511)
Q Consensus        34 ~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~   70 (511)
                      +||++..+|++|   +|+|..-.+...+-+++|+...
T Consensus        24 lA~~l~~~G~~V---~gsD~~~~~~~~~L~~~Gi~v~   57 (459)
T PRK00421         24 LAEVLLNLGYKV---SGSDLKESAVTQRLLELGAIIF   57 (459)
T ss_pred             HHHHHHHCCCEE---EEECCCCCHHHHHHHHCCCEEE
T ss_conf             999999689939---9988989978999997879997


No 163
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=48.94  E-value=17  Score=15.46  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=18.6

Q ss_pred             HHHHHHCCCCEEECCCCCCCCHHHHHH---HHHCCCCHHHHHHHHHHH
Q ss_conf             999885898036236437022799999---998399989999999999
Q gi|255764461|r   35 ARFHRLDGLDVLFTTGTDEHGQKIAKA---AQNAGVTTKVFVDQNSRN   79 (511)
Q Consensus        35 ~R~~r~~G~~v~~~~g~D~hg~~i~~~---A~~~g~~p~e~~~~~~~~   79 (511)
                      .||..|.=++--|+++.++    |...   .=+.|++|+|-+.....+
T Consensus         5 ~~y~~~~~~~~~~~~~~~d----ila~fr~~P~~gv~~~eaaa~vAaE   48 (459)
T PRK13475          5 NRYADLSLKEEDLIAGGRH----VLCAYKMKPKAGFGYLETAAHFAAE   48 (459)
T ss_pred             CHHHHCCCCCCCCCCCCCE----EEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             0344266789755548966----9999985389987989998898870


No 164
>pfam06948 consensus
Probab=48.70  E-value=17  Score=15.44  Aligned_cols=58  Identities=16%  Similarity=0.093  Sum_probs=37.7

Q ss_pred             CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6437022799999998399989999999999--9999998088988674778888999999998887543102
Q gi|255764461|r   49 TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRN--FRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDI  119 (511)
Q Consensus        49 ~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~--~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~i  119 (511)
                      ...|.+..++..+..+.|+.|.. |..+.+.  +.+.++.+||...+..            +...++.++||.
T Consensus        49 ae~d~~~~~~l~el~~~gv~~~A-C~~~Ae~~gi~~~L~~~gi~v~~vG------------~~it~~l~~Gy~  108 (112)
T pfam06948        49 AEGDQEVLKILSELLQLGETPLA-CQRVAENFGIAEDLQKQGIRVEYVG------------EIIAELLEKGYE  108 (112)
T ss_pred             HCCCHHHHHHHHHHHHCCCEEHH-HHHHHHHCCCHHHHHHCCCEEEECC------------HHHHHHHHCCCE
T ss_conf             44869999999999986981637-8899987494678985796799865------------989999988997


No 165
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=48.04  E-value=17  Score=15.37  Aligned_cols=85  Identities=19%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             EEEEE-CCCCCCCCCCCHHHHHHHHH-HHH----HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHH
Q ss_conf             17997-88899998832224789789-999----99998858980362364370227999999983999-8999999999
Q gi|255764461|r    6 KLYIS-TAIAYPNAQPHIGHAYEMII-ADV----LARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT-TKVFVDQNSR   78 (511)
Q Consensus         6 ~~~vt-~~~Py~ng~lHlGH~~~~i~-~D~----~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~-p~e~~~~~~~   78 (511)
                      |.+|+ .-=--.+|.+|.++-+..+- +.+    =.+-+...|-+|-.+||.|.  ..++.+|+++|++ .-+=...-..
T Consensus         9 kLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~s--~ive~Ra~~LGI~~~~qG~~dK~~   86 (170)
T COG1778           9 KLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRDS--PIVEKRAKDLGIKHLYQGISDKLA   86 (170)
T ss_pred             EEEEEECCCEEECCEEEECCCCCEEEEEECCCCHHHHHHHHCCCEEEEEECCCC--HHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             289994564056674888489756543303576999999985992899967878--789999997597002424186899


Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999998088988
Q gi|255764461|r   79 NFRDMADVLDISYD   92 (511)
Q Consensus        79 ~~~~~~~~~~i~~D   92 (511)
                      .+++.++++|+++.
T Consensus        87 a~~~L~~~~~l~~e  100 (170)
T COG1778          87 AFEELLKKLNLDPE  100 (170)
T ss_pred             HHHHHHHHHCCCHH
T ss_conf             99999999489989


No 166
>PRK11890 phosphate acetyltransferase; Provisional
Probab=47.85  E-value=17  Score=15.35  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8999999998858980362364370227999999983999-899999999999999998088988674778888999999
Q gi|255764461|r   29 IIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT-TKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCR  107 (511)
Q Consensus        29 i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~-p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~  107 (511)
                      -..+++.+-++.....|.++.+.|+.=+.-...|.++|+- |-  .-=..+++++..+.+|++.+.|- -.++++.+..-
T Consensus         9 ~~~~li~~a~~~~pkrvava~aed~~vL~Aa~~a~~eGia~PI--LvG~~~~I~~~a~~~gldl~~~e-Iid~~~~~~~a   85 (312)
T PRK11890          9 KYERLIARARTLPPLPTAVVHPCDESSLRGAVEAAQLGLITPI--LVGPRARIRAVAEECGLDLSDYQ-IVDAPHSHAAA   85 (312)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE--EECCHHHHHHHHHHCCCCCCCCE-EECCCCCHHHH
T ss_conf             9999999985489962999847997999999999986983799--98999999999998599978886-87899828999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99888754310
Q gi|255764461|r  108 ILWKKISDKGD  118 (511)
Q Consensus       108 ~~~~~l~~~G~  118 (511)
                      +.-.+|..+|.
T Consensus        86 ~~av~lv~~g~   96 (312)
T PRK11890         86 AKAVELVRAGE   96 (312)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999833788


No 167
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .   The S4 domain is a small domain consisting of 60-65 amino acid residues that probably mediates binding to RNA. This family consists of organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=47.39  E-value=7  Score=18.22  Aligned_cols=29  Identities=34%  Similarity=0.612  Sum_probs=19.9

Q ss_pred             CCCCCCCCCEEECCCCCCH-----HHCCCCCCCC
Q ss_conf             2323334303305860100-----0002211100
Q gi|255764461|r  287 PKKVFSHGFILHKGEKISK-----SLGNVIDPIE  315 (511)
Q Consensus       287 p~~i~~~g~l~~~G~KMSK-----S~GN~I~~~e  315 (511)
                      -+.++.|||+++||+|-.-     |-|-.|..+|
T Consensus       118 ARQLVsHGhi~vNGk~VdIPSy~v~~Gd~i~ikE  151 (217)
T TIGR01017       118 ARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKE  151 (217)
T ss_pred             HHHHHHCCEEEECCEEECCCEEEECCCCEEEEEE
T ss_conf             6356408807879818522406707998899810


No 168
>PRK12565 30S ribosomal protein S4; Provisional
Probab=47.31  E-value=7.1  Score=18.19  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             CCCCCCCCCEEECCCCCCH-----HHCCCCCCCCH
Q ss_conf             2323334303305860100-----00022111000
Q gi|255764461|r  287 PKKVFSHGFILHKGEKISK-----SLGNVIDPIEV  316 (511)
Q Consensus       287 p~~i~~~g~l~~~G~KMSK-----S~GN~I~~~e~  316 (511)
                      -+.++.|||+++||+|+.-     +-|-+|...+-
T Consensus       106 ARQlV~Hghi~vng~kVdIPSy~vk~GDvI~vkek  140 (197)
T PRK12565        106 ARQMVNHGHILVNGKKVNIPSYEVKVGDEITLREK  140 (197)
T ss_pred             HHHHHHCCCEEECCEEECCCCEEECCCCEEEECHH
T ss_conf             86674078889799895588767069999997332


No 169
>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.
Probab=46.32  E-value=18  Score=15.18  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=56.2

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHHH
Q ss_conf             9999998858980362364370227999999983999899999999999999998088988674---7788889999999
Q gi|255764461|r   32 DVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFI---RTTEKRHHDTCRI  108 (511)
Q Consensus        32 D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~---rT~~~~~~~~~~~  108 (511)
                      -++.|-+ .....+.|.-|.|+.=+.....+.++|+----++ =..+.+++..+.+|++.+.+.   -++++...+.++.
T Consensus         5 ~i~~~ak-~~~krIvf~eged~rvl~Aa~~~~~egi~~PILv-G~~~~I~~~~~~~gl~~~~~eIid~~~~~~~~~y~~~   82 (319)
T pfam01515         5 RIFERAK-SAKKRIVFPEGEDERVLKAAKELLEEGIADPILI-GNEIEIKAKALGLGLDLSGIEIVDPETSPRDEEYADE   82 (319)
T ss_pred             HHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf             9999998-4899899958799799999999998699279998-8999999999976989667789888887679999999


Q ss_pred             HHHHHHHHHCCCCCCHH
Q ss_conf             98887543102211000
Q gi|255764461|r  109 LWKKISDKGDIYKGCYS  125 (511)
Q Consensus       109 ~~~~l~~~G~iy~~~~~  125 (511)
                      ++++...||..++....
T Consensus        83 ~~~~~~rkG~~~~~a~~   99 (319)
T pfam01515        83 FYELRKHKGMTPEIARE   99 (319)
T ss_pred             HHHHHHCCCCCHHHHHH
T ss_conf             99997238999999999


No 170
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=46.00  E-value=18  Score=15.15  Aligned_cols=53  Identities=6%  Similarity=-0.068  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHC--CCCCCCCCCCCCCC
Q ss_conf             999999888754310221100010113343015566721--11222222223320
Q gi|255764461|r  104 DTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVY--KGADGQYYNAQHNP  156 (511)
Q Consensus       104 ~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~--~~~~~~~~~~~~~p  156 (511)
                      ..+-.+...|.+.|++...+..+.+-.+...+...-.+.  +...|++|+..|-+
T Consensus        49 p~v~~i~~~l~~egiv~~~~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeGrgi~  103 (354)
T COG1568          49 PLVASILEILEDEGIVKIEEGGVELTEKGEELAEELGIKKKYDYTCECCEGRGIS  103 (354)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             6899999999866818985484764262699999848774666414665686503


No 171
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.86  E-value=19  Score=15.03  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=19.5

Q ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             988881799788899998832224789789999999988589803623
Q gi|255764461|r    1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT   48 (511)
Q Consensus         1 m~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~   48 (511)
                      |-+-||+++.     +.|.     +-.|=..| ++|-++..|++|.-+
T Consensus         1 mL~gK~Illg-----VtGs-----IAayK~~~-L~r~L~k~G~~V~vv   37 (392)
T PRK05579          1 MLAGKRIVLG-----VSGG-----IAAYKALE-LVRRLRKAGADVRVV   37 (392)
T ss_pred             CCCCCEEEEE-----ECCH-----HHHHHHHH-HHHHHHHCCCEEEEE
T ss_conf             9999989999-----8337-----99999999-999998789989999


No 172
>PRK01904 hypothetical protein; Provisional
Probab=44.42  E-value=14  Score=16.02  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=26.1

Q ss_pred             HHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHC-CCCCCCH
Q ss_conf             7654331012323334303305860100000221110000002-2111211
Q gi|255764461|r  278 FLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEV-GVDALRY  327 (511)
Q Consensus       278 ~l~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~-g~D~lR~  327 (511)
                      ..+|..+++|..|   .+|.+||+|+|+|+=+.-...++-+.- .-=++||
T Consensus        18 ~a~A~tL~lp~~i---elL~vdG~k~~~slf~~~~sl~L~~G~~HQIvfRy   65 (217)
T PRK01904         18 ASFAGMVTTSSNV---EFLAIDGQKASKSLLGKAKSFNVDDTQVHQVVVRV   65 (217)
T ss_pred             HHHHHHCCCCCCC---EEEEECCEECCCCCCCCCCCEECCCCCCEEEEEEE
T ss_conf             9887514078871---38997682777654567761563799704899998


No 173
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=43.74  E-value=8  Score=17.82  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCEEECCCCCCH-----HHCCCCCCCC
Q ss_conf             12323334303305860100-----0002211100
Q gi|255764461|r  286 LPKKVFSHGFILHKGEKISK-----SLGNVIDPIE  315 (511)
Q Consensus       286 ~p~~i~~~g~l~~~G~KMSK-----S~GN~I~~~e  315 (511)
                      --+.++.|||+++||+|+.-     .-|-+|...+
T Consensus       106 ~ARQlV~HgHi~VNgkkVnIPSy~vk~GDvI~v~~  140 (201)
T CHL00113        106 AARQLVNHGHILVNGRIVDIPSYRCKPRDIITIKD  140 (201)
T ss_pred             HHHHEEECCEEEECCEEECCCCEEEECCCEEEECC
T ss_conf             76105846629989989337875842799899753


No 174
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family; InterPro: IPR012741    This entry describes a subfamily of the B12 binding domain proteins that include corrinoid proteins specific to four different, mutually non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.; GO: 0031419 cobalamin binding, 0050897 cobalt ion binding, 0015948 methanogenesis.
Probab=42.97  E-value=7.6  Score=17.97  Aligned_cols=72  Identities=21%  Similarity=0.326  Sum_probs=42.7

Q ss_pred             CHHCCCCCCCCHHCCHHHHHHHHHHHHCC---CCCCCCCCE------------EECCCCCCHHHCCCCCCCCHHHHCCC-
Q ss_conf             00004564321000102477654331012---323334303------------30586010000022111000000221-
Q gi|255764461|r  259 DLHVIGKDILRFHAIYWPAFLLSANLPLP---KKVFSHGFI------------LHKGEKISKSLGNVIDPIEVIEEVGV-  322 (511)
Q Consensus       259 d~~~~G~Dii~Fh~i~~pa~l~~~~~~~p---~~i~~~g~l------------~~~G~KMSKS~GN~I~~~e~l~~~g~-  322 (511)
                      |||=|||+|+-       +||.+.|+..-   +.|+++.|+            +..-.=|-+|--|..+..|.|.+-|. 
T Consensus        97 DvHdIGk~iV~-------~mL~~~GF~v~DLGrDVp~~~vvE~v~~~~~~kv~l~~sALMTTtM~~qk~i~d~L~E~g~R  169 (201)
T TIGR02370        97 DVHDIGKNIVV-------TMLRANGFDVIDLGRDVPIDTVVEKVKKEKPEKVMLTGSALMTTTMLGQKDIEDKLKEEGLR  169 (201)
T ss_pred             CCCHHHHHHHH-------HHHHCCCCEEEECCCCCCCCCCEEHHEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             31110137999-------98750696688737555552011012100786678863124788768899999987425886


Q ss_pred             CCCCHHHEEECCCCCC
Q ss_conf             1121110000247873
Q gi|255764461|r  323 DALRYFLVREIACGKD  338 (511)
Q Consensus       323 D~lR~~l~~~~~~~~D  338 (511)
                      |.+..- .--+|.++|
T Consensus       170 d~vk~m-~GGApv~q~  184 (201)
T TIGR02370       170 DRVKVM-VGGAPVTQD  184 (201)
T ss_pred             CCCCEE-ECCCCCCHH
T ss_conf             535622-568764557


No 175
>PRK03641 hypothetical protein; Provisional
Probab=42.61  E-value=15  Score=15.74  Aligned_cols=46  Identities=26%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             HHHHHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHH
Q ss_conf             5433101232333430330586010000022111000000221112111
Q gi|255764461|r  280 LSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYF  328 (511)
Q Consensus       280 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~  328 (511)
                      +|..+++|..|   ..|.+||+|+|.|+-..-...++-+.-.-=++||-
T Consensus        19 ~A~tL~lp~~i---elL~vnGk~v~~slf~~~~~l~L~~G~hQIvfry~   64 (220)
T PRK03641         19 FATTLRLSPEV---DLLVLDGKKVSSSLLRGADSIELDNGPHQLVFRVE   64 (220)
T ss_pred             HEEEEECCCCE---EEEEECCEECCCCCCCCCCEEEECCCCEEEEEEEE
T ss_conf             50466479864---69998898854434567752671799448999971


No 176
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.45  E-value=21  Score=14.77  Aligned_cols=18  Identities=11%  Similarity=0.206  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHCCH
Q ss_conf             999999999987750358
Q gi|255764461|r  393 VCSRVLQEIRENMQNQLI  410 (511)
Q Consensus       393 ~l~~~~~~v~~a~e~~~~  410 (511)
                      ++.++..+..+.+....|
T Consensus       120 ev~E~vreLse~~~E~~~  137 (204)
T COG3286         120 EVVELVRELSEVYREARF  137 (204)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999872


No 177
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=42.42  E-value=21  Score=14.77  Aligned_cols=19  Identities=21%  Similarity=0.291  Sum_probs=9.4

Q ss_pred             HHHHHHHHCCCCHHHHHHH
Q ss_conf             9999999839998999999
Q gi|255764461|r   57 KIAKAAQNAGVTTKVFVDQ   75 (511)
Q Consensus        57 ~i~~~A~~~g~~p~e~~~~   75 (511)
                      +...+-+++|.+..++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~   24 (411)
T PRK08099          6 YLKTAIKQQGCTLQQVADA   24 (411)
T ss_pred             HHHHHHHHHCCCHHHHHHH
T ss_conf             9999999848829887654


No 178
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=42.01  E-value=8.6  Score=17.55  Aligned_cols=29  Identities=38%  Similarity=0.658  Sum_probs=20.6

Q ss_pred             CCCCCCCCCEEECCCCCCHH-----HCCCCCCCC
Q ss_conf             23233343033058601000-----002211100
Q gi|255764461|r  287 PKKVFSHGFILHKGEKISKS-----LGNVIDPIE  315 (511)
Q Consensus       287 p~~i~~~g~l~~~G~KMSKS-----~GN~I~~~e  315 (511)
                      -+.++.|||+++||+|+.-.     -|-+|...+
T Consensus       110 ARQ~v~Hghi~vNg~~v~ips~~~k~gd~i~vke  143 (201)
T PRK05327        110 ARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVRE  143 (201)
T ss_pred             HHHEEEEEEEEECCEEECCCCEECCCCCEEEECC
T ss_conf             6200644059989998357874738999999770


No 179
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=41.71  E-value=21  Score=14.69  Aligned_cols=13  Identities=15%  Similarity=0.184  Sum_probs=4.8

Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             9998999999999
Q gi|255764461|r   66 GVTTKVFVDQNSR   78 (511)
Q Consensus        66 g~~p~e~~~~~~~   78 (511)
                      +.+.+++.+.+-+
T Consensus        83 ~~t~e~i~~~FG~   95 (701)
T COG0317          83 PVTEELIEEIFGK   95 (701)
T ss_pred             CCCHHHHHHHHCH
T ss_conf             8899999988788


No 180
>pfam10009 DUF2252 Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=41.43  E-value=21  Score=14.66  Aligned_cols=94  Identities=18%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC------------CHHHHHHHHHCCCCHH---HHHHHHH
Q ss_conf             899998832224789789999999988589803623643702------------2799999998399989---9999999
Q gi|255764461|r   13 IAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH------------GQKIAKAAQNAGVTTK---VFVDQNS   77 (511)
Q Consensus        13 ~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h------------g~~i~~~A~~~g~~p~---e~~~~~~   77 (511)
                      .....|+.|+++.|.|-         .-.|.-|+=+-+.||=            .+-+.+.|...|.+..   ++++.+.
T Consensus        41 ~v~icGD~Hl~NFG~~~---------s~eg~lvFdiNDFDEa~~gp~ewDlkRLa~S~~laa~~~gl~~~~~~~~v~~~~  111 (383)
T pfam10009        41 RVWICGDCHLENFGLFA---------SPEGRLVFDINDFDEALPGPFEWDLKRLAASLVLAARENGLSEKDARRLVRAFA  111 (383)
T ss_pred             CEEEECCCHHHHCCCCC---------CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             54686351164157763---------889867756887653454872999999999999999986989899999999999


Q ss_pred             HHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999980889--88674778888999999998887543
Q gi|255764461|r   78 RNFRDMADVLDIS--YDDFIRTTEKRHHDTCRILWKKISDK  116 (511)
Q Consensus        78 ~~~~~~~~~~~i~--~D~~~rT~~~~~~~~~~~~~~~l~~~  116 (511)
                      +.+.+.+..+.=.  .+.|+-|. ..-...+++++++...+
T Consensus       112 ~~Y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ka~~r  151 (383)
T pfam10009       112 RSYRERLRDYAERDLLDRWYFTS-DNTRGVVRKALKKARKR  151 (383)
T ss_pred             HHHHHHHHHHCCCCHHHHHHCCH-HHHHHHHHHHHHHHHHH
T ss_conf             99999999871698777553251-33469999999999986


No 181
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115   This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii  but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=41.28  E-value=12  Score=16.39  Aligned_cols=15  Identities=33%  Similarity=0.780  Sum_probs=5.8

Q ss_pred             CCCCCCHHCCCCCCC
Q ss_conf             024110000456432
Q gi|255764461|r  254 KFWPADLHVIGKDIL  268 (511)
Q Consensus       254 ~~w~~d~~~~G~Dii  268 (511)
                      +|.|.|-|--|.||.
T Consensus       105 rylPddaqtaGrdia  119 (359)
T TIGR01819       105 RYLPDDAQTAGRDIA  119 (359)
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             657641223222446


No 182
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=41.27  E-value=21  Score=14.64  Aligned_cols=11  Identities=18%  Similarity=0.277  Sum_probs=5.3

Q ss_pred             CCCCHHHHCCC
Q ss_conf             11000000221
Q gi|255764461|r  312 DPIEVIEEVGV  322 (511)
Q Consensus       312 ~~~e~l~~~g~  322 (511)
                      ...++++++|.
T Consensus       121 ~~k~ll~klGi  131 (222)
T cd07018         121 FFKGLLDKLGV  131 (222)
T ss_pred             CHHHHHHHCCC
T ss_conf             27889998698


No 183
>KOG0517 consensus
Probab=40.58  E-value=22  Score=14.57  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=11.3

Q ss_pred             EEECCCCCCCEECCCCCCCCHHHHHHHHHHHC
Q ss_conf             00024787301112221110013321102210
Q gi|255764461|r  330 VREIACGKDGFYDKDGLKKRVNADLANGIGNL  361 (511)
Q Consensus       330 ~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~  361 (511)
                      ++....|.|- .+...+..+. .+|...+-|+
T Consensus       759 vss~d~G~DE-~saq~LlkrH-~~l~~El~a~  788 (2473)
T KOG0517         759 VSSEDVGHDE-ASAQALLKRH-RDLEEELRAY  788 (2473)
T ss_pred             CCCHHCCCCH-HHHHHHHHHH-HHHHHHHHHH
T ss_conf             1402027864-8899999999-9999999984


No 184
>pfam03185 CaKB Calcium-activated potassium channel, beta subunit.
Probab=40.33  E-value=11  Score=16.83  Aligned_cols=16  Identities=25%  Similarity=0.926  Sum_probs=11.8

Q ss_pred             CCHHCCHHHHHHHHHH
Q ss_conf             2100010247765433
Q gi|255764461|r  268 LRFHAIYWPAFLLSAN  283 (511)
Q Consensus       268 i~Fh~i~~pa~l~~~~  283 (511)
                      +-||+++||.+++..|
T Consensus       166 ~lfH~lfWP~l~l~gG  181 (201)
T pfam03185       166 VLLHCLLWPTLMLTGG  181 (201)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999889999762


No 185
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=39.63  E-value=4.9  Score=19.36  Aligned_cols=45  Identities=27%  Similarity=0.428  Sum_probs=35.9

Q ss_pred             HHHCCCCCCCCCCEEEC--CCCCCHH--HCCCCCCCCHHHHCCCCCCCH
Q ss_conf             31012323334303305--8601000--002211100000022111211
Q gi|255764461|r  283 NLPLPKKVFSHGFILHK--GEKISKS--LGNVIDPIEVIEEVGVDALRY  327 (511)
Q Consensus       283 ~~~~p~~i~~~g~l~~~--G~KMSKS--~GN~I~~~e~l~~~g~D~lR~  327 (511)
                      +.+|||.|+.|+.=.++  |-+|-..  -|-.|++++|+++||-|++=.
T Consensus       187 efRLpKei~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~~~YGfDAVFI  235 (462)
T TIGR01316       187 EFRLPKEIVETEVKKLKKLGVKFRTDYLVGKTVTLEELLEKYGFDAVFI  235 (462)
T ss_pred             CCCCCHHHHHHHHHHHHHCCEEEEECCEECCCHHHHHHHHHCCCCEEEE
T ss_conf             8548757889888876326637994437505112888887519707999


No 186
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase; InterPro: IPR001980   Temperature-sensitive mutants of Escherichia coli, defective in the transfer of 3-deoxy-D-manno-octulosonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A, have been used to map KDO transferase activity on the E. coli chromosome . The KDO transferase gene, designated kdtA, was shown to code for a 43kDa polypeptide. Overexpression of this single gene product greatly stimulates incorporation of two stereochemically distinct KDO residues during lipopolysaccharide biosynthesis in extracts of E. coli .   From these experiments this protein was thought to play a role in lipopolysaccharide biosynthesis, however now it is annotated as phosphopantetheine adenylyltransferase (2.7.7.3 from EC), which catalyses the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine to give dephospho-CoA (DPCOA) and pyrophosphate in the fourth (and penultimate) step of coenzyme A biosynthesis .; GO: 0004595 pantetheine-phosphate adenylyltransferase activity, 0015937 coenzyme A biosynthetic process.
Probab=39.47  E-value=18  Score=15.13  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH-HCCCCCCC
Q ss_conf             883222478978999999998858980362364370227999999983-999899999999999999998-08898867
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTTKVFVDQNSRNFRDMADV-LDISYDDF   94 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~-g~~p~e~~~~~~~~~~~~~~~-~~i~~D~~   94 (511)
                      .|+|.||+      |++.|-.++  .|=.+|-        |...-.|. =-|.+|=++...+..++.+++ -|+..+.|
T Consensus         9 DP~T~GHL------DiikRa~~l--FDeV~Va--------v~~N~~K~~~f~~eeR~~~~~~~tk~~l~~~~NV~V~~f   71 (163)
T TIGR01510         9 DPITNGHL------DIIKRALKL--FDEVIVA--------VAINPSKKPLFSLEERVELIEDATKKHLKKIPNVEVDVF   71 (163)
T ss_pred             CCCCCCHH------HHHHHHHHH--CCEEEEE--------EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             98743638------899999862--2177788--------887488985689899999999999997236981489840


No 187
>TIGR01057 topA_arch DNA topoisomerase I; InterPro: IPR005739   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA.     This entry describes topoisomerase I from archaea, which is more closely related to bacterial than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils.    More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=39.17  E-value=23  Score=14.42  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=33.2

Q ss_pred             CCCEEE-CCCCCCCCHHHHHHHHHCCCCHHH-HHHHH------HHHHHHHHHHHCCCCC
Q ss_conf             980362-364370227999999983999899-99999------9999999998088988
Q gi|255764461|r   42 GLDVLF-TTGTDEHGQKIAKAAQNAGVTTKV-FVDQN------SRNFRDMADVLDISYD   92 (511)
Q Consensus        42 G~~v~~-~~g~D~hg~~i~~~A~~~g~~p~e-~~~~~------~~~~~~~~~~~~i~~D   92 (511)
                      |-+-++ -|++|-=|+=|==+|.|-+...+. .+.+|      .+++.+-|+.+.+..|
T Consensus        97 ~a~~y~~AcDYDiEG~lIGf~alky~Cg~~~~~A~RMkFStLt~~di~rAy~n~e~~~d  155 (637)
T TIGR01057        97 GADEYIVACDYDIEGELIGFKALKYACGVEKLKAKRMKFSTLTKKDIRRAYKNPEIEID  155 (637)
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCEEC
T ss_conf             35435676210356530767898750886400013343000237999999738894430


No 188
>pfam05045 RgpF Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.
Probab=38.59  E-value=23  Score=14.36  Aligned_cols=17  Identities=12%  Similarity=0.288  Sum_probs=7.1

Q ss_pred             CEECCCCCCCCCCCCCC
Q ss_conf             00003454434466644
Q gi|255764461|r  156 PVQWMEEEGYFFRLSAY  172 (511)
Q Consensus       156 p~~~~~~~~~f~~l~~~  172 (511)
                      |+.+.+-+..|.+...+
T Consensus       185 ~~~IlKrr~~F~k~~~~  201 (498)
T pfam05045       185 RTPILKRRVFFHDVKAL  201 (498)
T ss_pred             CCHHHHCCCCCCCCHHH
T ss_conf             32676436875440454


No 189
>PRK08655 prephenate dehydrogenase; Provisional
Probab=37.99  E-value=24  Score=14.29  Aligned_cols=36  Identities=31%  Similarity=0.456  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf             999999998858980362364370227999999983999
Q gi|255764461|r   30 IADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT   68 (511)
Q Consensus        30 ~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~   68 (511)
                      ++-.++|+++..||+| -++|.|..  +-+..|.++|+.
T Consensus        12 MG~~Fa~~f~~sGyeV-~I~gRd~~--k~~~va~~LGv~   47 (441)
T PRK08655         12 LGKWFARFLKDKGYEV-IVWGRDPK--KGKEVAKELGVE   47 (441)
T ss_pred             HHHHHHHHHHHCCCEE-EEEECCCC--HHHHHHHHHCCC
T ss_conf             7799999998679889-99815731--356788873862


No 190
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=37.74  E-value=24  Score=14.27  Aligned_cols=33  Identities=15%  Similarity=-0.013  Sum_probs=14.7

Q ss_pred             CCCCEEECCCCCCHHHCCCCCCCC----HHHHCCCCCC
Q ss_conf             343033058601000002211100----0000221112
Q gi|255764461|r  292 SHGFILHKGEKISKSLGNVIDPIE----VIEEVGVDAL  325 (511)
Q Consensus       292 ~~g~l~~~G~KMSKS~GN~I~~~e----~l~~~g~D~l  325 (511)
                      +|+|=..-|. |+.|..+.|...-    +.--.|+|.+
T Consensus       262 I~aHrA~~ga-~tr~p~~Gis~~~~l~KL~RLaGaD~~  298 (411)
T PRK09549        262 IMAHPAVSGA-YTASKLYGISSPLLLGKLLRYAGADFS  298 (411)
T ss_pred             EEECCCCCCE-EECCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             7631354412-204865651299999999999088844


No 191
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily; InterPro: IPR014344   Members of this entry belong to the family of polysaccharide deacetylases. All are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the gene coding region for the EpsH homologue that is the putative exosortase gene..
Probab=37.68  E-value=24  Score=14.26  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=39.9

Q ss_pred             HHHHHHHCCCCHHHH------HHHHHHHHHHHHHHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999839998999------99999999999998088988674778---88899999999888754310
Q gi|255764461|r   58 IAKAAQNAGVTTKVF------VDQNSRNFRDMADVLDISYDDFIRTT---EKRHHDTCRILWKKISDKGD  118 (511)
Q Consensus        58 i~~~A~~~g~~p~e~------~~~~~~~~~~~~~~~~i~~D~~~rT~---~~~~~~~~~~~~~~l~~~G~  118 (511)
                      =++.|-+.-+++.++      |++|++.+.++|+.-+++-+.|  |.   -+.|...|++|..    +||
T Consensus        11 FQVsAfa~~i~r~~Wd~l~~RVErNt~~iL~Ll~~~~~kATFF--tLGWvAERyP~LVr~Iv~----~GH   74 (274)
T TIGR03006        11 FQVSAFAGHIPRSEWDSLPCRVERNTDRILDLLDRHGVKATFF--TLGWVAERYPELVRRIVA----AGH   74 (274)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHCCHHHHHHHHH----CCC
T ss_conf             3588650468802367886127788899999997168815542--403475405288999997----198


No 192
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=37.26  E-value=24  Score=14.34  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=18.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             8832224789789999999988589803623643
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT   51 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~   51 (511)
                      .|+|.||+      |++.|-.++-. +|..+.|.
T Consensus        11 DPit~GHl------dii~ra~~lfD-~viv~v~~   37 (159)
T PRK00168         11 DPITNGHL------DIIERASKLFD-EVIVAVAI   37 (159)
T ss_pred             CCCCHHHH------HHHHHHHHHCC-EEEEECCC
T ss_conf             98844799------99999998679-99994056


No 193
>pfam00797 Acetyltransf_2 N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid.
Probab=36.36  E-value=21  Score=14.66  Aligned_cols=13  Identities=15%  Similarity=-0.146  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999999808
Q gi|255764461|r   76 NSRNFRDMADVLD   88 (511)
Q Consensus        76 ~~~~~~~~~~~~~   88 (511)
                      ...-+...++.+|
T Consensus        52 lN~Lf~~~L~~LG   64 (240)
T pfam00797        52 LNGLFYWALTELG   64 (240)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             3399999999869


No 194
>pfam11062 DUF2863 Protein of unknown function (DUF2863). This bacterial family of proteins have no known function.
Probab=35.94  E-value=13  Score=16.28  Aligned_cols=11  Identities=18%  Similarity=0.483  Sum_probs=4.6

Q ss_pred             CCCHHHHHHHH
Q ss_conf             43224899999
Q gi|255764461|r  463 QAFVPKLANKI  473 (511)
Q Consensus       463 ~Pi~P~~ae~i  473 (511)
                      +=|-|..|+..
T Consensus       360 ~~f~~EyCdDC  370 (398)
T pfam11062       360 ERFPPEYCEDC  370 (398)
T ss_pred             HCCCCHHHCCC
T ss_conf             11894333146


No 195
>pfam10266 Strumpellin Hereditary spastic paraplegia protein strumpellin. This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies.
Probab=35.54  E-value=26  Score=14.02  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=10.2

Q ss_pred             CCCEEECCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             9803623643702279999999839998
Q gi|255764461|r   42 GLDVLFTTGTDEHGQKIAKAAQNAGVTT   69 (511)
Q Consensus        42 G~~v~~~~g~D~hg~~i~~~A~~~g~~p   69 (511)
                      |.-|-...+||.+  |....|...-++|
T Consensus       271 G~tvnL~~~W~~y--kAA~~Al~nt~~~  296 (1080)
T pfam10266       271 GITVDLSVAWEPF--KAARTAINNTITQ  296 (1080)
T ss_pred             CEEEEHHHHHHCC--HHHHHHHHHHCCH
T ss_conf             2787657467422--9899999835688


No 196
>PRK12496 hypothetical protein; Provisional
Probab=35.46  E-value=26  Score=14.02  Aligned_cols=28  Identities=11%  Similarity=0.202  Sum_probs=18.6

Q ss_pred             HCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEC
Q ss_conf             011334301556672111222222223320000
Q gi|255764461|r  127 WYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQW  159 (511)
Q Consensus       127 ~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~  159 (511)
                      ++|..|++.++..     ...+.|+.||+|+..
T Consensus       130 ~~C~gC~~~~~~~-----~~~~~C~~CGs~l~r  157 (166)
T PRK12496        130 YVCKGCKKMYPEN-----YPDEVCDVCGSPVKR  157 (166)
T ss_pred             EECCCCCCCCCCC-----CCCCCCCCCCCHHHH
T ss_conf             9999878717788-----998838788989999


No 197
>cd02163 PPAT_a Phosphopantetheine adenylyltransferase (PPAT) is an essential enzyme in bacteria that catalyses a rate-limiting step in coenzyme A (CoA) biosynthesis, by transferring an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA). Each phosphopantetheine adenylyltransferase (PPAT) subunit displays a dinucleotide-binding fold that is structurally similar to that in class I aminoacyl-tRNA synthetases. Superposition of bound adenylyl moieties from dPCoA in PPAT and ATP in aminoacyl-tRNA synthetases suggests nucleophilic attack by the 4'-phosphopantetheine on the -phosphate of ATP. The proposed catalytic mechanism implicates transition state stabilization by PPAT without involving functional groups of the enzyme in a chemical sense in the reaction. The homologous active site attachment of ATP and the structural distribution of predicted sequence-binding motifs in PPAT classify the enzyme as belonging to the nucleotidyltransferase superfamily.
Probab=34.94  E-value=26  Score=14.02  Aligned_cols=18  Identities=33%  Similarity=0.412  Sum_probs=14.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             883222478978999999998858
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLD   41 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~   41 (511)
                      .|+|.||+      |++.|..++=
T Consensus         8 DP~t~GHl------dii~ra~~lF   25 (152)
T cd02163           8 DPITNGHL------DIIERASRLF   25 (152)
T ss_pred             CCCCCCHH------HHHHHHHHHC
T ss_conf             98840099------9999999878


No 198
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit; InterPro: IPR014279   Nitrogenase, also called dinitrogenase, is the enzyme which catalyses the conversion of molecular nitrogen to ammonia (biological nitrogen fixation). The most widespread and most efficient nitrogenase contains a molybdenum cofactor. This entry, also known as the VnfG family, represents the delta subunit of the vanadium-containing V nitrogenase. It is homologous to AnfG, the delta subunit of the iron-only nitrogenase..
Probab=34.93  E-value=26  Score=13.96  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=16.2

Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65312332103455589556566789999999999877
Q gi|255764461|r  368 MILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENM  405 (511)
Q Consensus       368 f~~k~~~g~ip~~~~~~~~D~~ll~~l~~~~~~v~~a~  405 (511)
                      +..+-+.|..+  ..-|+.|+-+.+...-++..+.+.|
T Consensus        34 ~~~~Ll~GE~~--~~eTp~dklFYaDA~~l~~d~k~~~   69 (109)
T TIGR02930        34 KAGKLLNGEKV--KKETPMDKLFYADAKVLVSDLKERF   69 (109)
T ss_pred             HHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99787508723--2025124656764899999976317


No 199
>TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein; InterPro: IPR011980    Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of Escherichia coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule ..
Probab=34.78  E-value=22  Score=14.60  Aligned_cols=55  Identities=16%  Similarity=0.381  Sum_probs=36.9

Q ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             332000034544344666444443444333321000676545775410345675323433377765
Q gi|255764461|r  153 QHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGI  218 (511)
Q Consensus       153 ~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGi  218 (511)
                      .-+|+.|+.+..+=++=..-++-+++.+.+.| |++.+..+++...|.+|.         + |||=
T Consensus       139 ~~RP~RF~sp~~FP~~~~tt~~gvK~PiGTGP-W~l~e~K~~EY~~F~RN~---------n-YWGe  193 (513)
T TIGR02294       139 MVRPLRFLSPSDFPKKNDTTKDGVKKPIGTGP-WMLKESKQDEYAVFVRNE---------N-YWGE  193 (513)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCCCCEEECCC---------C-CCCC
T ss_conf             24876760602278887887576127658987-312102178755331076---------6-7888


No 200
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=34.29  E-value=27  Score=13.89  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=56.2

Q ss_pred             CCCCCEEEE---ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCCCHHHHH-----------HHHHC
Q ss_conf             988881799---7888999988322247897899999999885898036236-43702279999-----------99983
Q gi|255764461|r    1 MKEREKLYI---STAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTT-GTDEHGQKIAK-----------AAQNA   65 (511)
Q Consensus         1 m~~~~~~~v---t~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~-g~D~hg~~i~~-----------~A~~~   65 (511)
                      |+.-||+.|   |+-+-..+|.+....+...  ++.+++ ++.+|++|..|| |.=.-|.....           ++..-
T Consensus         2 ~~~~kRIVIKiGSs~lt~~~g~l~~~~i~~l--~~~I~~-L~~~G~evilVSSGAia~G~~~L~~~~rp~l~~kQA~AAv   78 (363)
T PRK13402          2 DSPWKRIVVKVGSALITPHKQGCSSHYLLGI--AQFIVY-LRAQGHQVVLVSSGSVAAGYHKLGFIDRPSVPEKKAMAAA   78 (363)
T ss_pred             CCCCCEEEEEECCCEEECCCCCCCHHHHHHH--HHHHHH-HHHCCCEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             9988669999670106899998789999999--999999-9978998999887879964776099768975788899985


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9998999999999999999980889886747788889999999988875431022
Q gi|255764461|r   66 GVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        66 g~~p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy  120 (511)
                      |.  -.+...|.+.|--...++=++.|.|   .+.+.+.-++..+..|.+.|.|-
T Consensus        79 GQ--~~Lm~~Y~~~F~~~~AQiLLT~~D~---~~r~rylN~r~Tl~~Ll~~gvIP  128 (363)
T PRK13402         79 GQ--GDMMATWSKLFDFPAAQLLLTHGDL---RDRERYISIRNTINVLLEHGILP  128 (363)
T ss_pred             HH--HHHHHHHHHHHCCHHHHHHCCHHHH---CCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             39--9999999998473576771888786---16478899999999999689422


No 201
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=34.16  E-value=27  Score=13.87  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             67899999999998775035899999999999999
Q gi|255764461|r  390 ILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEV  424 (511)
Q Consensus       390 ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~  424 (511)
                      ++.-+.+++++.  -+.+.+...|++.+-++++.+
T Consensus       336 ~I~~l~~~ve~a--~lg~~e~~~~lkrl~e~~~~~  368 (373)
T COG1415         336 LIEFLEELVEKA--RLGRQEKLRALKRLAELSKFP  368 (373)
T ss_pred             HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999864--158689999999999865316


No 202
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase; InterPro: IPR014074   This entry describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and other carboxysome shell proteins..
Probab=34.03  E-value=24  Score=14.21  Aligned_cols=27  Identities=11%  Similarity=0.311  Sum_probs=18.7

Q ss_pred             CHHHHHH-HHHHHHHHHHHHHC---CCCEEE
Q ss_conf             2224789-78999999998858---980362
Q gi|255764461|r   21 HIGHAYE-MIIADVLARFHRLD---GLDVLF   47 (511)
Q Consensus        21 HlGH~~~-~i~~D~~~R~~r~~---G~~v~~   47 (511)
                      -|||..| -++-|-|.+-+-|+   .++.+|
T Consensus        53 ~LG~~LP~~LLedaW~sgLdm~sqkafqaL~   83 (463)
T TIGR02701        53 KLGFKLPEELLEDAWVSGLDMKSQKAFQALY   83 (463)
T ss_pred             HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             4063315875389876420412568888999


No 203
>TIGR00373 TIGR00373 conserved hypothetical protein TIGR00373; InterPro: IPR005241    This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. .
Probab=33.89  E-value=27  Score=13.84  Aligned_cols=107  Identities=11%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             CCCCCCCHHHHHHHHHCCC-CHHHHHHHHH---HHH-HHHHHHHCCCCCCCCCCCCHH------------------HHHH
Q ss_conf             6437022799999998399-9899999999---999-999998088988674778888------------------9999
Q gi|255764461|r   49 TGTDEHGQKIAKAAQNAGV-TTKVFVDQNS---RNF-RDMADVLDISYDDFIRTTEKR------------------HHDT  105 (511)
Q Consensus        49 ~g~D~hg~~i~~~A~~~g~-~p~e~~~~~~---~~~-~~~~~~~~i~~D~~~rT~~~~------------------~~~~  105 (511)
                      .|-|+-|.+|.-.-...|. |-++++.+..   +.+ +-+++.+++..-.|.|.-|++                  -++.
T Consensus        12 ~eGdEe~~~vl~~L~~kGe~Tdeeis~elg~klN~vRk~Ly~LYdagladYkR~kD~eT~Wy~YtW~~~~eK~~~v~Krk   91 (168)
T TIGR00373        12 AEGDEEAIEVLESLLIKGEVTDEEISKELGIKLNVVRKLLYKLYDAGLADYKRRKDDETNWYEYTWKIELEKVLDVVKRK   91 (168)
T ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             47753213444222026874778888883840557889999873030100021368988852365166702147898788


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHCCCCCC-CCCCHHHHCCCCCCCCCCCCCCCEEC
Q ss_conf             9999888754310221100010113343-01556672111222222223320000
Q gi|255764461|r  106 CRILWKKISDKGDIYKGCYSGWYSLRDE-AYYNDDEVYKGADGQYYNAQHNPVQW  159 (511)
Q Consensus       106 ~~~~~~~l~~~G~iy~~~~~~~y~~~~~-~~~~~~~v~~~~~~~~~~~~~~p~~~  159 (511)
                      ..++.++|.++=-+ +...--+.||.|. +|-.++-..   -+=-|..||+.++.
T Consensus        92 ~~e~~kkLreklEf-E~nn~ff~CpN~~vrftf~eAme---~nFtCP~CG~~l~~  142 (168)
T TIGR00373        92 LEELVKKLREKLEF-EKNNMFFVCPNMNVRFTFDEAME---LNFTCPECGAMLDY  142 (168)
T ss_pred             HHHHHHHHHHHHHH-HCCCEEEEECCCEEEEEHHHHHC---CCCCCCCCCCHHHH
T ss_conf             99999999987423-10772587138405740422311---67988331323224


No 204
>PRK11823 DNA repair protein RadA; Provisional
Probab=32.76  E-value=29  Score=13.71  Aligned_cols=29  Identities=24%  Similarity=0.437  Sum_probs=11.6

Q ss_pred             CCCCCCEEECCC-CCCHHHCCCCCCCCHHH
Q ss_conf             333430330586-01000002211100000
Q gi|255764461|r  290 VFSHGFILHKGE-KISKSLGNVIDPIEVIE  318 (511)
Q Consensus       290 i~~~g~l~~~G~-KMSKS~GN~I~~~e~l~  318 (511)
                      ++.-||++.||. -==|.+-|.||.-=.++
T Consensus       210 ~~lVGHVTKdG~iAGPkvLEHmVDtVl~fE  239 (454)
T PRK11823        210 VFLVGHVTKEGAIAGPRVLEHMVDTVLYFE  239 (454)
T ss_pred             EEEEEEECCCCCCCCCHHHHHHHCEEEEEC
T ss_conf             899997726776466145222010468751


No 205
>TIGR02889 spore_YpeB germination protein YpeB; InterPro: IPR014239   Proteins in this entry include the sporulation protein YpeB from Bacillus subtilis. YpeB and the putative spore-cortex-lytic enzyme SleB are required for normal germination. These proteins appear to be restricted to endospore-forming species in the Firmicutes lineage of bacteria, and have been found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary for SleB to function..
Probab=32.42  E-value=29  Score=13.68  Aligned_cols=30  Identities=17%  Similarity=0.051  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             4443444333321000676545775410345
Q gi|255764461|r  173 QDKLLSYYESHPEFILPIERRNEVISFVKSG  203 (511)
Q Consensus       173 ~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~g  203 (511)
                      .+++.+.+.. +.-+...+++..+..++..+
T Consensus       225 ~p~~~~~l~g-k~kiS~~EA~~~~~~~~g~~  254 (465)
T TIGR02889       225 TPKGKEALKG-KEKISKEEAKQIARDFLGDN  254 (465)
T ss_pred             CCHHHHHHCC-CCHHHHHHHHHHHHHHCCCC
T ss_conf             8103443037-75021899999999854745


No 206
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=32.27  E-value=29  Score=13.66  Aligned_cols=48  Identities=25%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf             179978889999883222478978999999998858980362364370227999999983999
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT   68 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~   68 (511)
                      |+++. +.|.      -||+.+.+.   +++-++.+|++|.|++..+     ....++..|.+
T Consensus         2 ril~~-~~~~------~GH~~P~l~---lA~~L~~rGh~Vt~~~~~~-----~~~~i~~~g~~   49 (401)
T cd03784           2 RVLIT-TIGS------RGDVQPLVA---LAWALRAAGHEVRVATPPE-----FADLVEAAGLE   49 (401)
T ss_pred             EEEEE-CCCC------HHHHHHHHH---HHHHHHHCCCEEEEEECHH-----HHHHHHHCCCE
T ss_conf             79998-7985------758999999---9999998899599993878-----88899977986


No 207
>PRK10949 protease 4; Provisional
Probab=32.19  E-value=29  Score=13.65  Aligned_cols=41  Identities=17%  Similarity=0.238  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHCCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf             999999999980889886------------7477-8888999999998887543
Q gi|255764461|r   76 NSRNFRDMADVLDISYDD------------FIRT-TEKRHHDTCRILWKKISDK  116 (511)
Q Consensus        76 ~~~~~~~~~~~~~i~~D~------------~~rT-~~~~~~~~~~~~~~~l~~~  116 (511)
                      +.--+++.++++||.+..            |+|+ .++++++..+.++..|+++
T Consensus       185 ~~~y~K~lLdKlgI~~~vfrvG~YKSAvEpf~r~~MS~e~re~~~~~l~~lw~~  238 (618)
T PRK10949        185 NGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQN  238 (618)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             177899999974982899981375674651114459999999999999999999


No 208
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=32.13  E-value=29  Score=13.64  Aligned_cols=17  Identities=0%  Similarity=-0.027  Sum_probs=7.1

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             88889999999988875
Q gi|255764461|r   98 TEKRHHDTCRILWKKIS  114 (511)
Q Consensus        98 ~~~~~~~~~~~~~~~l~  114 (511)
                      +.|.--..++.|.+.+.
T Consensus        27 sGpNtl~~vs~ii~~i~   43 (331)
T pfam03492        27 SGPNTFLAVSNIIDTVE   43 (331)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             97528999999999999


No 209
>KOG4284 consensus
Probab=31.78  E-value=30  Score=13.60  Aligned_cols=31  Identities=29%  Similarity=0.580  Sum_probs=20.6

Q ss_pred             CHHHHH---HHHHH----------HHHHHHHHHCCCCEEECCCC
Q ss_conf             222478---97899----------99999988589803623643
Q gi|255764461|r   21 HIGHAY---EMIIA----------DVLARFHRLDGLDVLFTTGT   51 (511)
Q Consensus        21 HlGH~~---~~i~~----------D~~~R~~r~~G~~v~~~~g~   51 (511)
                      ||||+.   +|.+|          |-++-+++.+|.+|.+++|.
T Consensus       262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISga  305 (980)
T KOG4284         262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGA  305 (980)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99999860726777765413421047887751169871774141


No 210
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=31.64  E-value=30  Score=13.59  Aligned_cols=42  Identities=21%  Similarity=0.150  Sum_probs=28.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             179978889999883222478978999999998858980362364370
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDE   53 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~   53 (511)
                      ||.+-|...||    |+|=+..++  --+++.+..+|++|..+|..+.
T Consensus         1 kIaivt~~y~P----~~GG~~~~~--~~La~~L~~~GheV~Vit~~~~   42 (374)
T cd03817           1 KIGIFTDTYLP----QVNGVATSI--RRLAEELEKRGHEVYVVAPSYP   42 (374)
T ss_pred             CEEEECCCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECCCC
T ss_conf             98999589899----998099999--9999999977998999972798


No 211
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases.  Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=31.55  E-value=30  Score=13.58  Aligned_cols=57  Identities=25%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCC
Q ss_conf             88899998832224789789--999999988589803623--6437022799999998399
Q gi|255764461|r   11 TAIAYPNAQPHIGHAYEMII--ADVLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGV   67 (511)
Q Consensus        11 ~~~Py~ng~lHlGH~~~~i~--~D~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~   67 (511)
                      .-+|.+++..|.++...+..  +=-.++.+...|.+|.++  .|.|++|-.+....++.|+
T Consensus        17 ~~~P~~g~~~~a~~~~~~~GG~a~N~A~~la~LG~~~~~i~~vG~D~~G~~~~~~l~~~gv   77 (265)
T cd01947          17 DAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELESGGD   77 (265)
T ss_pred             CCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             8889999889852678922878999999999879975799732487289999999986899


No 212
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235    Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=31.47  E-value=15  Score=15.69  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999980889886747788889999999988875431022
Q gi|255764461|r   74 DQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        74 ~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy  120 (511)
                      +=|+.++.+.|+.=.+.-..|+..+   |.+..-++.+||.+.|||.
T Consensus        49 nGYT~kILDVLKe~~V~AaFFVTgh---Y~K~~pdLvKRM~~EGHiv   92 (225)
T TIGR02884        49 NGYTPKILDVLKENKVPAAFFVTGH---YIKTQPDLVKRMVDEGHIV   92 (225)
T ss_pred             CCCCHHHHHHHHCCCCCEEEEEECC---CCCCCHHHHHHHHHCCCEE
T ss_conf             5770334233203788311464077---3147667666555458343


No 213
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308   These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=31.20  E-value=30  Score=13.54  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=22.7

Q ss_pred             HHHCCCCCCCC--CCHHHHCCCCC--CCCCCCCC--CCEE
Q ss_conf             01011334301--55667211122--22222233--2000
Q gi|255764461|r  125 SGWYSLRDEAY--YNDDEVYKGAD--GQYYNAQH--NPVQ  158 (511)
Q Consensus       125 ~~~y~~~~~~~--~~~~~v~~~~~--~~~~~~~~--~p~~  158 (511)
                      |=|-||.|+.|  ..|..+..|=|  .+-|..||  +|..
T Consensus       716 PHY~Cp~Cky~Ef~~D~~~~~GfDLp~K~CP~Cgak~pl~  755 (1264)
T TIGR01405       716 PHYLCPNCKYSEFVTDGSVGSGFDLPDKDCPKCGAKAPLK  755 (1264)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8750878735530037877887768578888888777634


No 214
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413   This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump  represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=30.83  E-value=31  Score=13.49  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=13.3

Q ss_pred             CHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             000002211121110000247873011
Q gi|255764461|r  315 EVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       315 e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
                      +.-.+.+++.||-. +.+.-...++-|
T Consensus       467 ~~~~~Ma~~GLRv~-A~A~~~~~~L~F  492 (856)
T TIGR01522       467 EEAAEMASEGLRVI-AFASGTEKDLVF  492 (856)
T ss_pred             HHHHHHHCCCCEEE-EEEECCCCCCEE
T ss_conf             98763200666466-565225687157


No 215
>PRK04527 argininosuccinate synthase; Provisional
Probab=30.74  E-value=31  Score=13.48  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHCCCCEEECC---C--CCCCCHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHH
Q ss_conf             9999999885898036236---4--3702279999999839998---99999999999999998088988-674778888
Q gi|255764461|r   31 ADVLARFHRLDGLDVLFTT---G--TDEHGQKIAKAAQNAGVTT---KVFVDQNSRNFRDMADVLDISYD-DFIRTTEKR  101 (511)
Q Consensus        31 ~D~~~R~~r~~G~~v~~~~---g--~D~hg~~i~~~A~~~g~~p---~e~~~~~~~~~~~~~~~~~i~~D-~~~rT~~~~  101 (511)
                      .-++..|++-+|++|.=++   |  .|+--..++.+|.+.|.+-   .+.-+++.+.+..-+-+.|..|- .|.-.++ .
T Consensus        16 TSv~l~wL~e~g~~Vi~~~ad~G~~~~e~~~~i~~kA~~~GA~~~~v~D~~~ef~~~~v~~~i~ana~Yeg~YpL~ts-a   94 (397)
T PRK04527         16 TSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVS-D   94 (397)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCHHHCCCCCCCCC-H
T ss_conf             999999998759947999997899861515789999998199779997289999999999998606454185556321-0


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999988875431
Q gi|255764461|r  102 HHDTCRILWKKISDKG  117 (511)
Q Consensus       102 ~~~~~~~~~~~l~~~G  117 (511)
                      ..-+++.+.+...+.|
T Consensus        95 RplIak~~ve~A~~~g  110 (397)
T PRK04527         95 RYLIVDAALKRAEELG  110 (397)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             7999999999999729


No 216
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337   Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes..
Probab=30.74  E-value=29  Score=13.66  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00676545775410345675--323433377765786422214
Q gi|255764461|r  187 ILPIERRNEVISFVKSGLKD--LSLSRKTFDWGIKIPDDPQYI  227 (511)
Q Consensus       187 ~~p~~~~~~~~~wl~~gl~D--w~ISR~~~~WGipiP~~~~~~  227 (511)
                      ..|+-.+..+.++   |++|  |.||    .||.=|||=.-.+
T Consensus        58 ~~PdvA~aifK~l---Gi~dVn~~~t----e~G~lIPGL~AgR   93 (285)
T TIGR02995        58 AAPDVARAIFKRL---GIKDVNASVT----EYGALIPGLKAGR   93 (285)
T ss_pred             CCHHHHHHHHHHC---CCEEEEEEEC----CCCCCCCCCCCCH
T ss_conf             8557899999854---8110000035----6403145410102


No 217
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=30.70  E-value=31  Score=13.48  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             17997888999988322247897899999999885898036236437
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ||.+.||  |   ++..|=+..|+  --+++.+..+|++|..++-.+
T Consensus         1 kI~~i~~--y---pP~~GGi~~~~--~~La~~L~~~Gh~V~v~~~~~   40 (366)
T cd03822           1 RIALVSP--Y---PPRKCGIATFT--TDLVNALSARGPDVLVVSVAA   40 (366)
T ss_pred             CEEEEEC--C---CCCCCCHHHHH--HHHHHHHHHCCCEEEEEECCC
T ss_conf             9899918--9---99998389999--999999986799899995888


No 218
>KOG0572 consensus
Probab=30.62  E-value=31  Score=13.47  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=47.5

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHH----HHHHHH
Q ss_conf             8881799788899998832224789789999999988589803623643702279999999839998999----999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVF----VDQNSR   78 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~----~~~~~~   78 (511)
                      +-+.|+|-|  ||  |.|-++|-++.+-+--+.|++-..|.  .+.|++|.     ++-+.-.-.+|+..    ......
T Consensus        87 n~QPFvv~t--~~--G~lavAHNGnLVN~~~Lrr~l~~~g~--~l~T~SDS-----Elil~~~a~~~~~~~~~~~~d~~~  155 (474)
T KOG0572          87 NVQPFVVNT--PH--GSLAVAHNGNLVNYKSLRRELLEEGV--GLNTSSDS-----ELILQLIAYAPEDVYRVDAPDWFA  155 (474)
T ss_pred             CCCCEEEEC--CC--CEEEEECCCCCCCHHHHHHHHHHCCC--CCCCCCCH-----HHHHHHHHHCHHHHHCCCCCCHHH
T ss_conf             556558724--77--22787306732366999999986075--01468828-----999999973657662244763899


Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999998088988
Q gi|255764461|r   79 NFRDMADVLDISYD   92 (511)
Q Consensus        79 ~~~~~~~~~~i~~D   92 (511)
                      .+...+++++-+|.
T Consensus       156 ri~~~~~~~~g~Ys  169 (474)
T KOG0572         156 RIRDVMELLPGAYS  169 (474)
T ss_pred             HHHHHHHHCCCCEE
T ss_conf             99999986677526


No 219
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=30.47  E-value=31  Score=13.45  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCH
Q ss_conf             999999988589803623643702279999999839998
Q gi|255764461|r   31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTT   69 (511)
Q Consensus        31 ~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p   69 (511)
                      .--+|+.++.+||+|   +|+|-.-++...+.+++|+.+
T Consensus        20 MsglA~iL~~~G~~V---sGSD~~~~~~t~~L~~~G~~i   55 (459)
T COG0773          20 MSGLAEILLNLGYKV---SGSDLAESPMTQRLEALGIEI   55 (459)
T ss_pred             HHHHHHHHHHCCCCE---ECCCCCCCHHHHHHHHCCCEE
T ss_conf             799999999679911---771665267789999789968


No 220
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Probab=30.07  E-value=31  Score=13.40  Aligned_cols=31  Identities=16%  Similarity=0.101  Sum_probs=13.6

Q ss_pred             CHHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             95565667-----89999999999877503589999
Q gi|255764461|r  384 TESDESIL-----SVCSRVLQEIRENMQNQLIHRAL  414 (511)
Q Consensus       384 ~~~D~~ll-----~~l~~~~~~v~~a~e~~~~~~Al  414 (511)
                      .+.-.|+-     -...++-.++...+.+.+-.+.+
T Consensus       470 ~Ps~dWLn~~lgfV~TskARskIr~~~k~~~re~~i  505 (743)
T PRK10872        470 NPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNI  505 (743)
T ss_pred             CCCHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf             969579456567576667799999999874599999


No 221
>PRK10132 hypothetical protein; Provisional
Probab=29.96  E-value=32  Score=13.39  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=32.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             95565667899999999998775035899999999999999788654187012
Q gi|255764461|r  384 TESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWEL  436 (511)
Q Consensus       384 ~~~D~~ll~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l  436 (511)
                      .+.-..+.++..+..++...-+..-  ....+..-+.+..++.|+.+ +||.-
T Consensus        40 k~e~~~lR~kAe~~LketR~rL~~~--~~v~~~ar~aa~~AD~YVre-nPW~s   89 (108)
T PRK10132         40 KGEAEAARRKAQALLKETRARMHGR--TRVQQAARDAVGCADTFVRE-RPWCS   89 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHC-CCCHH
T ss_conf             7899999999999999999987454--69999999999868888864-89504


No 222
>TIGR02015 BchY chlorophyllide reductase subunit Y; InterPro: IPR010245   This entry represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.; GO: 0016731 oxidoreductase activity acting on iron-sulfur proteins as donors NAD or NADP as acceptor, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process, 0016021 integral to membrane.
Probab=29.87  E-value=32  Score=13.38  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=14.9

Q ss_pred             CCCCHHHHHHHHHH------HHHHHHHHHHHHHCCHHHH
Q ss_conf             55895565667899------9999999987750358999
Q gi|255764461|r  381 GAFTESDESILSVC------SRVLQEIRENMQNQLIHRA  413 (511)
Q Consensus       381 ~~~~~~D~~ll~~l------~~~~~~v~~a~e~~~~~~A  413 (511)
                      ..++..|+.+++..      ...+++=.++++.|+..-+
T Consensus       325 T~~~~~D~~~L~~~G~~VkyR~~LE~D~~Av~~f~PDL~  363 (426)
T TIGR02015       325 TAWGAEDKEWLEALGVEVKYRASLEDDMEAVEEFEPDLA  363 (426)
T ss_pred             CCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCEE
T ss_conf             754266799998479558860223678999961699757


No 223
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=29.82  E-value=32  Score=13.37  Aligned_cols=14  Identities=21%  Similarity=0.460  Sum_probs=8.6

Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             88875431022110
Q gi|255764461|r  110 WKKISDKGDIYKGC  123 (511)
Q Consensus       110 ~~~l~~~G~iy~~~  123 (511)
                      +.+..++|.||--+
T Consensus        96 ~~~~~~~GdihiHD  109 (625)
T PRK08271         96 YLRQIENGEIYVHD  109 (625)
T ss_pred             HHHHHHCCCEEEEC
T ss_conf             99998748858713


No 224
>pfam08673 RsbU_N Phosphoserine phosphatase RsbU, N-terminal domain. RsbU is a phosphoserine phosphatase which acts as a positive regulator of the general stress-response factor of gram positive organisms, sigma-B. The phosphatase activity of RsbU is stimulated by association with the RsbT kinase. Deletions in the N terminal domain are deleterious to the activity of RsbU.
Probab=29.43  E-value=32  Score=13.33  Aligned_cols=45  Identities=9%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999988589803623643702279999999839998999999999999
Q gi|255764461|r   31 ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFR   81 (511)
Q Consensus        31 ~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~   81 (511)
                      .+++.+|+.-+....+|.      +.+...++.+.+++|+|+++--...+.
T Consensus         5 k~iL~~yL~~~~E~~Ly~------~q~fsr~~iek~IsPEeIV~iH~~~l~   49 (77)
T pfam08673         5 KRLLDEYLASQDEQSLYK------CEKFSRELIEKDISPEEIVSIHKSVLE   49 (77)
T ss_pred             HHHHHHHHHCCCHHHHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999880876999999------999889999807999999999999999


No 225
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=29.03  E-value=33  Score=13.28  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=19.2

Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             980889886747788889999999988875431022
Q gi|255764461|r   85 DVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        85 ~~~~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy  120 (511)
                      +.+||..|.=-||..|++-+.-.+..+.+.+++.++
T Consensus        77 R~LGI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~  112 (113)
T COG4352          77 RTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVF  112 (113)
T ss_pred             HHHCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             760861000102478889999999999998458668


No 226
>KOG2623 consensus
Probab=28.83  E-value=33  Score=13.26  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=17.5

Q ss_pred             CEE-ECCCCCCHHHCCCCCCCCH
Q ss_conf             033-0586010000022111000
Q gi|255764461|r  295 FIL-HKGEKISKSLGNVIDPIEV  316 (511)
Q Consensus       295 ~l~-~~G~KMSKS~GN~I~~~e~  316 (511)
                      .++ ..|+|+-||-||+||.+--
T Consensus       265 LlTsstG~KlGKSaGnAvWLdp~  287 (467)
T KOG2623         265 LLTSSTGAKLGKSAGNAVWLDPS  287 (467)
T ss_pred             EEECCCCHHHCCCCCCEEEECCC
T ss_conf             57657511323477862884676


No 227
>COG4889 Predicted helicase [General function prediction only]
Probab=28.70  E-value=33  Score=13.24  Aligned_cols=72  Identities=21%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             999988589803623643702279999999839998999--99999999999998088988674778888999999998
Q gi|255764461|r   34 LARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVF--VDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILW  110 (511)
Q Consensus        34 ~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~--~~~~~~~~~~~~~~~~i~~D~~~rT~~~~~~~~~~~~~  110 (511)
                      +..++|..|.-|.|.|--   .+|...+|+++|..+-++  |++-|..--.++.  +=+-..|+|.|+..+.+..++++
T Consensus       272 ~~~~~k~~~~~vvFsTYQ---Sl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a--~dd~saFt~vHs~~niKa~kRlY  345 (1518)
T COG4889         272 MEHRQKANGLTVVFSTYQ---SLPRIKEAQEAGLDEFDLIICDEAHRTTGATLA--GDDKSAFTRVHSDQNIKAAKRLY  345 (1518)
T ss_pred             HHHHHCCCCCEEEEECCC---CHHHHHHHHHCCCCCCCEEEECCHHCCCCCEEC--CCCCCCCEEECCCCCHHHHHHHH
T ss_conf             987533378389997021---148789999749997537974400014462322--57720104533764158887666


No 228
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.69  E-value=33  Score=13.24  Aligned_cols=11  Identities=18%  Similarity=0.325  Sum_probs=6.2

Q ss_pred             CCCHHHHHHHH
Q ss_conf             43224899999
Q gi|255764461|r  463 QAFVPKLANKI  473 (511)
Q Consensus       463 ~Pi~P~~ae~i  473 (511)
                      .|+.|+.+..+
T Consensus       727 ~~~~p~~~~ql  737 (917)
T COG0474         727 LFFLPLTPLQL  737 (917)
T ss_pred             CCCCCCCHHHH
T ss_conf             57777578999


No 229
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=28.63  E-value=17  Score=15.30  Aligned_cols=36  Identities=8%  Similarity=0.027  Sum_probs=23.4

Q ss_pred             HHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE
Q ss_conf             543102211000101133430155667211122222222332000
Q gi|255764461|r  114 SDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQ  158 (511)
Q Consensus       114 ~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~  158 (511)
                      .+++-.+.+..+.|||.+|.--+..+         .|..||+.++
T Consensus         2 ~kk~~~~~gk~~iyWCe~cNlPl~~~---------~c~~cg~~~~   37 (202)
T COG5270           2 RKKMPVVLGKFPIYWCEKCNLPLLGR---------RCSVCGSKVE   37 (202)
T ss_pred             CCCCCEEECCCCEEEHHHCCCCCCCC---------CCCCCCCCCE
T ss_conf             75553030543064132288743555---------2456677600


No 230
>pfam11243 DUF3045 Protein of unknown function (DUF3045). Members in this family of proteins are annotated as gene protein 30.1. Currently no function is known.
Probab=28.24  E-value=34  Score=13.19  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=18.3

Q ss_pred             CCHHHH-HHHHHHHHHHHHHHCCCCCCH
Q ss_conf             888899-999999888754310221100
Q gi|255764461|r   98 TEKRHH-DTCRILWKKISDKGDIYKGCY  124 (511)
Q Consensus        98 ~~~~~~-~~~~~~~~~l~~~G~iy~~~~  124 (511)
                      ..|++. ..-.+||+++.++|.||..++
T Consensus        27 ~nP~fr~~KD~~IFk~CVeqGFiYvse~   54 (90)
T pfam11243        27 CNPEFRAQKDAEIFKECVEQGFIYISEH   54 (90)
T ss_pred             CCHHHHHHCHHHHHHHHHHCCEEEEEHH
T ss_conf             4889886231899999997053886576


No 231
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2.   This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases .   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=28.20  E-value=34  Score=13.18  Aligned_cols=10  Identities=30%  Similarity=0.763  Sum_probs=6.2

Q ss_pred             CCCCHHHHHH
Q ss_conf             6460244432
Q gi|255764461|r  228 MYVWIDALTN  237 (511)
Q Consensus       228 ~YVWfDa~~g  237 (511)
                      |-+|+.|++-
T Consensus       205 f~~W~~Al~~  214 (545)
T TIGR01511       205 FVIWLFALET  214 (545)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999987


No 232
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715    L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis  ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate.    Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=27.76  E-value=34  Score=13.13  Aligned_cols=103  Identities=11%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             ECCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCC--HHHHHHHH---------
Q ss_conf             7888999988--3222478978999999998858980362364370227999999983999--89999999---------
Q gi|255764461|r   10 STAIAYPNAQ--PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVT--TKVFVDQN---------   76 (511)
Q Consensus        10 t~~~Py~ng~--lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~--p~e~~~~~---------   76 (511)
                      |+-+-.+.|.  |+.+|+..-+- .|-  -++..|++|..||-=     +|..-...+|.+  |++++.+=         
T Consensus         9 sS~Lt~~~g~h~l~~~~i~~lv~-~v~--~L~~~Gh~vviVSSG-----A~AaG~~~LG~~~rP~~la~KQAlAAVGQ~~   80 (379)
T TIGR01027         9 SSSLTGSSGSHELDRSRIAELVE-QVA--ALHAAGHEVVIVSSG-----AVAAGFEALGLPERPKTLAEKQALAAVGQVR   80 (379)
T ss_pred             CCEEECCCCCCEECHHHHHHHHH-HHH--HHHHCCCEEEEEECC-----HHHHHHHHCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf             32111788874137799999999-999--998659989998167-----5886234455699986256788787314568


Q ss_pred             -HHHHHHHHHHHCCCCCC--CCCC--CCHH--HHHHHHHHHHHHHHHHCCC
Q ss_conf             -99999999980889886--7477--8888--9999999988875431022
Q gi|255764461|r   77 -SRNFRDMADVLDISYDD--FIRT--TEKR--HHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        77 -~~~~~~~~~~~~i~~D~--~~rT--~~~~--~~~~~~~~~~~l~~~G~iy  120 (511)
                       .+.+...|..+|+..=.  -+|-  .+-+  -+.=.+.-+.+|.+.|.|-
T Consensus        81 Lm~~y~~~F~~Yg~~~aQiLLTr~D~~~R~eeRy~NAr~TL~~Ll~~gvvP  131 (379)
T TIGR01027        81 LMQLYENLFSSYGLKVAQILLTRADFSKREEERYLNARNTLEALLELGVVP  131 (379)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             999999999754882224340579886337899999999999998659478


No 233
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=27.65  E-value=34  Score=13.11  Aligned_cols=18  Identities=11%  Similarity=0.183  Sum_probs=13.3

Q ss_pred             CCCCCHHHHCCCCCCCHH
Q ss_conf             111000000221112111
Q gi|255764461|r  311 IDPIEVIEEVGVDALRYF  328 (511)
Q Consensus       311 I~~~e~l~~~g~D~lR~~  328 (511)
                      |-.+|++.+=-.+--|+|
T Consensus       411 VlIDDLvtkGv~EPYRMF  428 (621)
T PRK05192        411 VLIDDLVTKGTKEPYRMF  428 (621)
T ss_pred             HHHHHHHHCCCCCCCCCC
T ss_conf             415667607999641033


No 234
>KOG2384 consensus
Probab=27.10  E-value=35  Score=13.05  Aligned_cols=27  Identities=33%  Similarity=0.362  Sum_probs=18.1

Q ss_pred             CCCCEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf             898036236437022799999998399
Q gi|255764461|r   41 DGLDVLFTTGTDEHGQKIAKAAQNAGV   67 (511)
Q Consensus        41 ~G~~v~~~~g~D~hg~~i~~~A~~~g~   67 (511)
                      .|.-|.+|--+|.||.-+..-|++.|.
T Consensus        32 lgrg~a~vgv~d~ssldaaqlaek~g~   58 (223)
T KOG2384          32 LGRGVAFVGVTDESSLDAAQLAEKGGA   58 (223)
T ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHCCH
T ss_conf             616755444334445308999986270


No 235
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=27.04  E-value=35  Score=13.04  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=26.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             8817997888999988322247897899999999885898036236437
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ++|+++-..     |.  .||+.+.+.   ++|-++.+||+|.|.|.-+
T Consensus         1 ~mkil~~~~-----~~--~Ghv~p~~a---L~~eL~~~gheV~~~~~~~   39 (406)
T COG1819           1 RMKILFVVC-----GA--YGHVNPCLA---LGKELRRRGHEVVFASTGK   39 (406)
T ss_pred             CCEEEEEEC-----CC--CCCHHHHHH---HHHHHHHCCCEEEEEECHH
T ss_conf             957999817-----76--432266699---9999997697499973778


No 236
>KOG0780 consensus
Probab=26.77  E-value=36  Score=13.00  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=16.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999998399989999999999999999808
Q gi|255764461|r   58 IAKAAQNAGVTTKVFVDQNSRNFRDMADVLD   88 (511)
Q Consensus        58 i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~   88 (511)
                      |..+-.+..++|. ++.+..+.+++....-+
T Consensus        35 I~~ALLesDV~~~-lV~~l~~nir~~i~~~~   64 (483)
T KOG0780          35 ICRALLESDVNPR-LVKELRENIRKIINLEK   64 (483)
T ss_pred             HHHHHHHCCCCHH-HHHHHHHHHHHHHCHHH
T ss_conf             9999985258888-99999999998746242


No 237
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division.  The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=26.63  E-value=12  Score=16.55  Aligned_cols=60  Identities=15%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             CCCCCCCCCCEEEC-CCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCE--ECCCCCCC
Q ss_conf             12323334303305-86010000022111000000221112111000024787301--11222111
Q gi|255764461|r  286 LPKKVFSHGFILHK-GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGF--YDKDGLKK  348 (511)
Q Consensus       286 ~p~~i~~~g~l~~~-G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~--Fs~~~~~~  348 (511)
                      ++..-++|||+++- ..+|+.+.--+-...-.+ .||.|-+||-  +-.+.++.+.  ++..++..
T Consensus        53 pfg~tIAHGfltLSl~~~~~~~~~~~~~~~~~v-NYG~dkvRF~--~PV~vGs~vR~~~~l~~v~~  115 (149)
T cd03450          53 PFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGV-NYGLDKVRFP--APVPVGSRVRGRFTLLSVEE  115 (149)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE-ECCCCCEEEC--CCCCCCCEEEEEEEEEEEEE
T ss_conf             888734650669999998875266767843333-0033526706--87567999999999999899


No 238
>pfam09176 Mpt_N Methylene-tetrahydromethanopterin dehydrogenase, N-terminal. Members of this family adopt a alpha-beta structure, with a core comprising three alpha/beta/alpha layers, in which each sheet contains four strands. They are predominantly found in prokaryotic methylene-tetrahydromethanopterin dehydrogenase, which catalyses the dehydrogenation of methylene-tetrahydromethanopterin and the reversible dehydrogenation of methylene-H(4)F.
Probab=26.33  E-value=22  Score=14.55  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=20.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             99998832224789789999999988589803623643702
Q gi|255764461|r   14 AYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH   54 (511)
Q Consensus        14 Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h   54 (511)
                      ||  |..-+....+.++.-|+.|--+-.-...+|+.|.|.+
T Consensus        17 ~y--~~V~~~~V~~LVqdaIFsR~p~~~~~TaIFiGG~d~~   55 (81)
T pfam09176        17 PY--GNVTPEEVTGLVQDAIFSRGPKDLKRTAIFIGGRDMA   55 (81)
T ss_pred             CC--CCCCHHHHHHHHCCEEECCCCCCCCEEEEEECCCCHH
T ss_conf             33--7717889442214636714876772068998886599


No 239
>TIGR02967 guan_deamin guanine deaminase; InterPro: IPR014311   This entry describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as more distantly related homologs which are not included in this entry. .
Probab=26.18  E-value=28  Score=13.80  Aligned_cols=23  Identities=13%  Similarity=0.186  Sum_probs=14.8

Q ss_pred             HHHHHHHHHCC-CC-CCCCCCCCCCC
Q ss_conf             65457754103-45-67532343337
Q gi|255764461|r  191 ERRNEVISFVK-SG-LKDLSLSRKTF  214 (511)
Q Consensus       191 ~~~~~~~~wl~-~g-l~Dw~ISR~~~  214 (511)
                      +.+.-+.+|.. .| +-...|| +|+
T Consensus       167 ~s~~LI~~WhgLkGnR~~YavT-PRF  191 (426)
T TIGR02967       167 ESKALIERWHGLKGNRLLYAVT-PRF  191 (426)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEC-CCC
T ss_conf             9999999987420563673354-667


No 240
>cd01095 Nitrilotriacetate_monoxgenase nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.
Probab=26.08  E-value=37  Score=12.92  Aligned_cols=22  Identities=9%  Similarity=0.218  Sum_probs=9.8

Q ss_pred             CHHHHHHH--HHHHCCCCCCCCCC
Q ss_conf             06765457--75410345675323
Q gi|255764461|r  188 LPIERRNE--VISFVKSGLKDLSL  209 (511)
Q Consensus       188 ~p~~~~~~--~~~wl~~gl~Dw~I  209 (511)
                      .|-...++  .++.+++|.--|.|
T Consensus        95 ~P~~~AR~~aTLDhiS~GR~gwNi  118 (358)
T cd01095          95 EPYHLARRFASLDHISGGRAGWNV  118 (358)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             889999999767774388248998


No 241
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=26.04  E-value=37  Score=12.91  Aligned_cols=25  Identities=12%  Similarity=-0.056  Sum_probs=12.9

Q ss_pred             CCCHHHCCCCCCCC----HHHHCCCCCCC
Q ss_conf             01000002211100----00002211121
Q gi|255764461|r  302 KISKSLGNVIDPIE----VIEEVGVDALR  326 (511)
Q Consensus       302 KMSKS~GN~I~~~e----~l~~~g~D~lR  326 (511)
                      -|+-|..+.|...-    +..-.|+|.+-
T Consensus       270 a~~r~~~~Gis~~~~l~Kl~RLaGaD~~~  298 (407)
T TIGR03332       270 AYTSSPFYGVSHSLLLGKLLRYAGADFSL  298 (407)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             66327777742999999999981989776


No 242
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1; InterPro: IPR004403 These proteins are translation factors that have been characterised in eukaryotes as the non-GTP-binding subunit of a cytosolic heterodimer that acts as a translation release factor for all three stop codons. Members of this orthologous family are found in Eukarya and Archaea. The name used should be eRF1 for the Archaea and aRF1 for the Eukarya. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=26.00  E-value=30  Score=13.59  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=9.6

Q ss_pred             CCEEECCC--CCCHHHCCCCCCCC
Q ss_conf             30330586--01000002211100
Q gi|255764461|r  294 GFILHKGE--KISKSLGNVIDPIE  315 (511)
Q Consensus       294 g~l~~~G~--KMSKS~GN~I~~~e  315 (511)
                      |++.+||+  -+..=+||-|+..+
T Consensus       145 GlivlDr~eat~g~vkG~~i~vL~  168 (425)
T TIGR00108       145 GLIVLDRKEATIGLVKGKRIEVLK  168 (425)
T ss_pred             CEEEECCCCEEEEEEECCCEEECH
T ss_conf             258980886079886077012231


No 243
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=25.86  E-value=37  Score=12.89  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=10.4

Q ss_pred             CCCCCCHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf             5860100000221110000002211121
Q gi|255764461|r  299 KGEKISKSLGNVIDPIEVIEEVGVDALR  326 (511)
Q Consensus       299 ~G~KMSKS~GN~I~~~e~l~~~g~D~lR  326 (511)
                      .|-|||=  |--  |..-.++|-+|+=|
T Consensus        48 ~nTk~sl--GkC--p~~H~~k~K~~YeR   71 (258)
T COG5200          48 RNTKRSL--GKC--PTSHEEKYKAEYER   71 (258)
T ss_pred             HCCCCCC--CCC--CCHHHHHHHHHHHH
T ss_conf             3250124--789--61468898889865


No 244
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=25.61  E-value=37  Score=12.86  Aligned_cols=14  Identities=7%  Similarity=0.178  Sum_probs=9.0

Q ss_pred             HHHHHHHCCCCCCC
Q ss_conf             99999984988000
Q gi|255764461|r  470 ANKIFDILFVADEN  483 (511)
Q Consensus       470 ae~i~~~Lg~~~~~  483 (511)
                      .+++.+.||+++++
T Consensus       360 ~~~~r~~LgL~~~S  373 (396)
T TIGR03528       360 YKELREKLQLDENS  373 (396)
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             59999976989998


No 245
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=25.59  E-value=37  Score=12.86  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=27.9

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             17997888999988322247897899999999885898036236437
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      |+++.++-.+|    +.|=+-.++  --+++.+..+|++|..+|..+
T Consensus         1 KIl~i~~~~~P----~~GG~e~~~--~~la~~L~~~Gh~V~v~t~~~   41 (375)
T cd03821           1 KILHVIPSFDP----KYGGPVRVV--LNLSKALAKLGHEVTVATTDA   41 (375)
T ss_pred             CEEEEECCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECCC
T ss_conf             98999598899----999899999--999999997799899997079


No 246
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=25.35  E-value=38  Score=12.83  Aligned_cols=38  Identities=13%  Similarity=0.201  Sum_probs=25.6

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             817997888999988322247897899999999885898036236437
Q gi|255764461|r    5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ||+++++.   -+    =||..|-+   .+++.++.+|++|.|++...
T Consensus         2 kkIii~~G---GT----GGHi~Pal---ala~~L~~~~~~v~~ig~~~   39 (352)
T PRK12446          2 KKIVFTGG---GS----AGHVTPNL---AIIPKLIEDNWDISYIGSHQ   39 (352)
T ss_pred             CEEEEEEC---CC----HHHHHHHH---HHHHHHHHCCCEEEEEECCC
T ss_conf             87999958---75----88899999---99999984899599998896


No 247
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981    This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=25.23  E-value=28  Score=13.81  Aligned_cols=47  Identities=23%  Similarity=0.198  Sum_probs=28.6

Q ss_pred             HCC-CCCCCCCCEE--E--CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCC
Q ss_conf             012-3233343033--0--586010000022111000000221112111000024787301112221110
Q gi|255764461|r  285 PLP-KKVFSHGFIL--H--KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKR  349 (511)
Q Consensus       285 ~~p-~~i~~~g~l~--~--~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~  349 (511)
                      .-| ++=++|+|.+  .  ||..              ||-|..|.++.    ...-...+.+|+++..+|
T Consensus       244 RGPGRHG~SNAffLYlrDPDghR--------------IElYt~DY~t~----D~Dk~~Pi~W~~~d~~~R  295 (312)
T TIGR02295       244 RGPGRHGVSNAFFLYLRDPDGHR--------------IELYTGDYLTG----DPDKLPPIRWTLDDPRQR  295 (312)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCE--------------EEEECCCCEEE----CCCCCCCEEECCCCCHHC
T ss_conf             07787652220043334689978--------------99982882254----278898746234421000


No 248
>pfam00998 RdRP_3 Viral RNA dependent RNA polymerase. This family includes viral RNA dependent RNA polymerase enzymes from hepatitis C virus and various plant viruses.
Probab=25.18  E-value=38  Score=12.80  Aligned_cols=18  Identities=33%  Similarity=0.388  Sum_probs=12.2

Q ss_pred             ECCCCCC----HHHCCCCCCCC
Q ss_conf             0586010----00002211100
Q gi|255764461|r  298 HKGEKIS----KSLGNVIDPIE  315 (511)
Q Consensus       298 ~~G~KMS----KS~GN~I~~~e  315 (511)
                      .+|-.||    +|+||.+..--
T Consensus       263 ~rgcR~SGd~~TS~GN~l~~~~  284 (485)
T pfam00998       263 VRGCRMSGDMNTSLGNCLLMCL  284 (485)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHH
T ss_conf             6872677875630458999999


No 249
>TIGR02058 lin0512_fam conserved hypothetical protein; InterPro: IPR011719   This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus..
Probab=25.01  E-value=33  Score=13.24  Aligned_cols=16  Identities=56%  Similarity=0.858  Sum_probs=7.1

Q ss_pred             CCCCCCCHHHHHHHHH
Q ss_conf             6437022799999998
Q gi|255764461|r   49 TGTDEHGQKIAKAAQN   64 (511)
Q Consensus        49 ~g~D~hg~~i~~~A~~   64 (511)
                      .|-|.||.-|..+|.+
T Consensus         9 ~G~D~HGQ~~T~AA~r   24 (120)
T TIGR02058         9 MGVDQHGQNITKAAAR   24 (120)
T ss_pred             CCEEECCCCHHHHHHH
T ss_conf             6244358886789999


No 250
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.98  E-value=38  Score=12.78  Aligned_cols=68  Identities=22%  Similarity=0.356  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHCCC
Q ss_conf             883222478978999999998858980362364370227999999983999899---9999999999999980889
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKV---FVDQNSRNFRDMADVLDIS   90 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e---~~~~~~~~~~~~~~~~~i~   90 (511)
                      |++-||-  +.++--+.+|+-...  .|+||||-.. ..-|.++|+++|++-..   +++-+.+.+.+.++...-+
T Consensus       100 GdPGIGK--STLLLQva~~lA~~~--~vLYVsGEES-~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~  170 (456)
T COG1066         100 GDPGIGK--STLLLQVAARLAKRG--KVLYVSGEES-LQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD  170 (456)
T ss_pred             CCCCCCH--HHHHHHHHHHHHHCC--CEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHCCCC
T ss_conf             6898779--899999999987059--5799967767-899999999828996455774112899999999854997


No 251
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=24.85  E-value=30  Score=13.51  Aligned_cols=16  Identities=19%  Similarity=0.210  Sum_probs=7.4

Q ss_pred             CHHHHHHHH--HHHCCCC
Q ss_conf             067654577--5410345
Q gi|255764461|r  188 LPIERRNEV--ISFVKSG  203 (511)
Q Consensus       188 ~p~~~~~~~--~~wl~~g  203 (511)
                      .|-...+++  ++.+++|
T Consensus        93 ~P~~~Ar~~aTlD~iS~G  110 (355)
T TIGR03612        93 PPAIVARMASTIDSISNG  110 (355)
T ss_pred             CHHHHHHHHHHHHHHCCC
T ss_conf             989999999978876098


No 252
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen.  It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=24.85  E-value=38  Score=12.76  Aligned_cols=43  Identities=23%  Similarity=0.184  Sum_probs=29.0

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             1799788899998832224789789999999988589803623643702
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEH   54 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~h   54 (511)
                      ||++.++-.+    ++.|=+..++  --++|.+..+|++|..+|+...+
T Consensus         1 KIlii~~~fp----P~~gG~~~~~--~~la~~L~~~Gh~V~v~t~~~~~   43 (394)
T cd03794           1 KILILSQYFP----PELGGGAFRT--TELAEELVKRGHEVTVITGSPNY   43 (394)
T ss_pred             CEEEECCCCC----CCCCCHHHHH--HHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9899917778----9898299999--99999999779979999547877


No 253
>pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Probab=24.63  E-value=35  Score=13.03  Aligned_cols=48  Identities=21%  Similarity=0.447  Sum_probs=22.5

Q ss_pred             HHCCHHHHHHHHHHH--HCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHE
Q ss_conf             000102477654331--0123233343033058601000002211100000022111211100
Q gi|255764461|r  270 FHAIYWPAFLLSANL--PLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLV  330 (511)
Q Consensus       270 Fh~i~~pa~l~~~~~--~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~  330 (511)
                      ||+  +|.++..+=+  +-..++.+|||         |-.|+.-+|-|+.-.-..|  ||-|+
T Consensus       106 fHG--Yp~lI~~L~~~R~n~~n~hV~GY---------~EeGttTTPFDM~v~N~~d--RfhLa  155 (203)
T pfam09363       106 FHG--YPWLIHRLTYRRTNHHNLHVRGY---------KEEGTTTTPFDMRVLNELD--RFHLA  155 (203)
T ss_pred             CCC--CHHHHHHHHCCCCCCCCEEEEEE---------CCCCCCCCCHHHHHHCCCC--HHHHH
T ss_conf             179--88899998557899884578710---------0178878716788770766--89999


No 254
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=24.59  E-value=39  Score=12.73  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999988589803623643702279999999839998999999999999999980889886
Q gi|255764461|r   32 DVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDD   93 (511)
Q Consensus        32 D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~D~   93 (511)
                      +.+. .++.+|+.+..||.    |+-|     ..|.-..+-++..++.+.+.+...|+.+|.
T Consensus        36 ~al~-~l~~~g~~~~ivTN----QsGI-----~rG~~t~~~~~~i~~~m~~~l~~~g~~id~   87 (181)
T PRK08942         36 EAIA-RLKQAGYRVVVATN----QSGI-----ARGLFTEAQLNALHEKMDWSLADRGGDLDG   87 (181)
T ss_pred             HHHH-HHHHCCCEEEEEEC----CHHH-----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9999-99987996999958----7134-----258677999999999999999976994313


No 255
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I  is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=24.31  E-value=39  Score=12.69  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCC
Q ss_conf             88881799788899998832224789789999999988589803623-64370
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT-TGTDE   53 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~-~g~D~   53 (511)
                      ++-||+..|+. -+  ..+|.||+.-.-       ..+..|.. +.| -.+|.
T Consensus         1 ~~gkkiv~~~G-~F--Dl~H~GHi~~l~-------~Ak~~gd~-LiVgv~sD~   42 (143)
T cd02172           1 AEGKKVVLTHG-CF--DLLHAGHVRHLL-------AARSLGDI-LVVGLTSDR   42 (143)
T ss_pred             CCCCEEEEECC-EE--CCCCHHHHHHHH-------HHHHCCCE-EEEEEECCH
T ss_conf             98898999927-33--778999999999-------99974998-999996898


No 256
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=24.29  E-value=39  Score=12.69  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             HHHCCCCCCC--CCCHHHHCCCCC--CCCCCCCCCCE
Q ss_conf             0101133430--155667211122--22222233200
Q gi|255764461|r  125 SGWYSLRDEA--YYNDDEVYKGAD--GQYYNAQHNPV  157 (511)
Q Consensus       125 ~~~y~~~~~~--~~~~~~v~~~~~--~~~~~~~~~p~  157 (511)
                      +-|-||.|+-  |..|..+..|-|  ..-|..||.|.
T Consensus       913 PHY~Cp~Cky~Ef~~d~svgsGfDLpdK~CPkCg~pl  949 (1444)
T COG2176         913 PHYLCPECKYSEFIDDGSVGSGFDLPDKDCPKCGTPL  949 (1444)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6532888740466237876778888999898679943


No 257
>PRK06526 transposase; Provisional
Probab=24.21  E-value=39  Score=12.68  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHH---------HHHHHHHHHHHHHCCC
Q ss_conf             9999998858980362364370227999999983999899999---------9999999999980889
Q gi|255764461|r   32 DVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVD---------QNSRNFRDMADVLDIS   90 (511)
Q Consensus        32 D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~---------~~~~~~~~~~~~~~i~   90 (511)
                      +.+.|-+|+.|..-.+        ..+...|.+++.++.|+..         +-...+...++..++.
T Consensus         6 ~~llr~LrL~~ma~~~--------~~~~~~a~~~~~s~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp   65 (254)
T PRK06526          6 AYLTRALKAPSLAGAV--------ERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIRAARFP   65 (254)
T ss_pred             HHHHHHCCHHHHHHHH--------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999983837899999--------99998887659999999999999999999998999999977979


No 258
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=24.15  E-value=40  Score=12.67  Aligned_cols=14  Identities=21%  Similarity=0.216  Sum_probs=8.8

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             39998999999999
Q gi|255764461|r   65 AGVTTKVFVDQNSR   78 (511)
Q Consensus        65 ~g~~p~e~~~~~~~   78 (511)
                      .|.+++|.+.....
T Consensus        32 ~G~~~ee~a~~iA~   45 (429)
T COG1850          32 SGVSTEEAAAAIAG   45 (429)
T ss_pred             CCCCHHHHHHHHCC
T ss_conf             99897998776303


No 259
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=24.01  E-value=25  Score=14.15  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             CCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHH
Q ss_conf             32333430330586010000022111000000221112111
Q gi|255764461|r  288 KKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYF  328 (511)
Q Consensus       288 ~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~  328 (511)
                      +.++.|||+.+||++-       =.|.-++..-..+.+++.
T Consensus       113 RQlV~HGHI~VnGk~V-------~iPSy~V~~gdei~V~~k  146 (205)
T COG0522         113 RQLVSHGHILVNGKRV-------NIPSYLVSPGDEISVREK  146 (205)
T ss_pred             HHHHHCCEEEECCEEE-------CCCCEEECCCCEEEEECC
T ss_conf             9884066289999995-------267379637778875203


No 260
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=23.97  E-value=35  Score=13.06  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=13.4

Q ss_pred             CCCCCHHHHCCCC---CCCHHHEEECCCCCCCEEC
Q ss_conf             1110000002211---1211100002478730111
Q gi|255764461|r  311 IDPIEVIEEVGVD---ALRYFLVREIACGKDGFYD  342 (511)
Q Consensus       311 I~~~e~l~~~g~D---~lR~~l~~~~~~~~D~~Fs  342 (511)
                      +.+.++++..+..   .+.++=--...+|.|.||.
T Consensus       267 lsl~~~v~~~s~nPAki~gl~~kG~i~~G~dADlv  301 (337)
T cd01302         267 LSLETLVEILSENPARIFGLYPKGTIAVGYDADLV  301 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf             99999999997889999598988861689957889


No 261
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=23.48  E-value=41  Score=12.58  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             CCCCCCEEECCC-CCCHHHCCCCCCCCHHHHCCCCCCCH
Q ss_conf             333430330586-01000002211100000022111211
Q gi|255764461|r  290 VFSHGFILHKGE-KISKSLGNVIDPIEVIEEVGVDALRY  327 (511)
Q Consensus       290 i~~~g~l~~~G~-KMSKS~GN~I~~~e~l~~~g~D~lR~  327 (511)
                      ++.-||++.||. -=-|-+-|.||.-=.++.-.-..+|.
T Consensus       203 ~~lVGHVTK~G~iAGPkvLEHmVDtVl~fEgd~~~~~R~  241 (372)
T cd01121         203 IFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRI  241 (372)
T ss_pred             EEEEEEECCCCCCCCCHHHEEEEEEEEEECCCCCCCEEE
T ss_conf             999987626886377403100213688751577655035


No 262
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=23.42  E-value=41  Score=12.57  Aligned_cols=113  Identities=9%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             CCCCCEEEEE---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC-CCCCCHHHHHHHHHCCCCHHHHHH--
Q ss_conf             9888817997---8889999883222478978999999998858980362364-370227999999983999899999--
Q gi|255764461|r    1 MKEREKLYIS---TAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG-TDEHGQKIAKAAQNAGVTTKVFVD--   74 (511)
Q Consensus         1 m~~~~~~~vt---~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g-~D~hg~~i~~~A~~~g~~p~e~~~--   74 (511)
                      |++.||+.|-   +-+--.+|.+....+...  ++.+++. +.+|++|..|++ .=.-|.+..    +....|.++.+  
T Consensus         6 ~~~~krIViKiG~s~lt~~~g~~~~~~i~~l--a~~I~~l-~~~G~~vvlVsSGav~~G~~~l----~~~~~~~~~~~~q   78 (265)
T PRK12314          6 LESAKRIVIKVGSSSLSYENGKINLERIEQL--VFVISDL-MNKGKEVILVSSGAIGAGLTKL----KLDKRPTNLAEKQ   78 (265)
T ss_pred             HCCCCEEEEEECHHHEECCCCCCCHHHHHHH--HHHHHHH-HHCCCEEEEECCCHHHCCCCCC----CCCCCCCCHHHHH
T ss_conf             5308789999661126789998599999999--9999999-9789989998637443150013----8877876246799


Q ss_pred             --------HHHHHHHHHHHHHCCCCCCC--CC--CCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             --------99999999999808898867--47--788889999999988875431022
Q gi|255764461|r   75 --------QNSRNFRDMADVLDISYDDF--IR--TTEKRHHDTCRILWKKISDKGDIY  120 (511)
Q Consensus        75 --------~~~~~~~~~~~~~~i~~D~~--~r--T~~~~~~~~~~~~~~~l~~~G~iy  120 (511)
                              .....+.+.|..+|+....-  ++  ..++.+..-++..+.+|.+.|.|-
T Consensus        79 a~aavGq~~Lm~~y~~~f~~~~~~~aQiLlt~~d~~~~~~~~n~~~tl~~ll~~g~IP  136 (265)
T PRK12314         79 ALAAVGQPELMSLYSQFFARYGIVVGQILLTRDDFDSPKSRANVKNTFESLLELGILP  136 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             9999727999999998865449815888504432127999999999999998489566


No 263
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=23.39  E-value=41  Score=12.57  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=24.8

Q ss_pred             CCCHHHH-HHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             8322247-897899999999885898036236437
Q gi|255764461|r   19 QPHIGHA-YEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus        19 ~lHlGH~-~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ..-+||. |+-    .++|.++.+|..++|++++|
T Consensus        12 ~iGmGHV~R~l----~LA~~l~k~~~~~~fl~k~~   42 (318)
T COG3980          12 EIGMGHVMRTL----TLARELEKRGFACLFLTKQD   42 (318)
T ss_pred             CCCCCHHHHHH----HHHHHHHHCCCEEEEECCCC
T ss_conf             55751345599----99999985174688840662


No 264
>PRK08181 transposase; Validated
Probab=23.34  E-value=41  Score=12.56  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=20.5

Q ss_pred             HHHHHHHHCCCCHHHHHHH---------HHHHHHHHHHHHCCC
Q ss_conf             9999999839998999999---------999999999980889
Q gi|255764461|r   57 KIAKAAQNAGVTTKVFVDQ---------NSRNFRDMADVLDIS   90 (511)
Q Consensus        57 ~i~~~A~~~g~~p~e~~~~---------~~~~~~~~~~~~~i~   90 (511)
                      .+...|.+++.++.|+...         -...+...++..++.
T Consensus        30 ~~~~~a~~~~~s~~e~L~~Lle~E~~~R~~rr~~rrlk~A~fp   72 (269)
T PRK08181         30 QFAEQADKEGWPAARFLAAIAEHEIAERARRRIERHLAEAHLP   72 (269)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999998759999999999999999999999999999868979


No 265
>PRK09850 hypothetical protein; Provisional
Probab=23.22  E-value=41  Score=12.55  Aligned_cols=68  Identities=21%  Similarity=0.207  Sum_probs=34.4

Q ss_pred             CCCCCEEEEECCC----------CCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCC
Q ss_conf             9888817997888----------99998832224789789--999999988589803623--643702279999999839
Q gi|255764461|r    1 MKEREKLYISTAI----------AYPNAQPHIGHAYEMII--ADVLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAG   66 (511)
Q Consensus         1 m~~~~~~~vt~~~----------Py~ng~lHlGH~~~~i~--~D~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g   66 (511)
                      |+++++++|....          |..-|.-+.|...-...  +==.|.-....|.+|.++  -|.|.+|..+....+++|
T Consensus         1 ~~~~~~I~ViGs~n~D~~~~~~~~~~~get~~g~~~~~~GGkg~N~A~~~arLG~~v~~i~~VG~D~~G~~l~~~l~~~G   80 (313)
T PRK09850          1 MREKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSG   80 (313)
T ss_pred             CCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCC
T ss_conf             99799689988556877763388999998666607988884799999999976998079998608668999999999849


Q ss_pred             CC
Q ss_conf             99
Q gi|255764461|r   67 VT   68 (511)
Q Consensus        67 ~~   68 (511)
                      +.
T Consensus        81 V~   82 (313)
T PRK09850         81 VY   82 (313)
T ss_pred             CC
T ss_conf             97


No 266
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=23.21  E-value=41  Score=12.54  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=26.7

Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             888817997888999988322247-89789999999988589803623643
Q gi|255764461|r    2 KEREKLYISTAIAYPNAQPHIGHA-YEMIIADVLARFHRLDGLDVLFTTGT   51 (511)
Q Consensus         2 ~~~~~~~vt~~~Py~ng~lHlGH~-~~~i~~D~~~R~~r~~G~~v~~~~g~   51 (511)
                      ++.+|++     -|.-.-+-|||+ |+...+-.++  ....|.+|+++||.
T Consensus         7 ~~~~Ri~-----~Yshd~~GlGHlrR~~~Ia~aLv--~d~~~~~Il~IsG~   50 (400)
T COG4671           7 SKRPRIL-----FYSHDLLGLGHLRRALRIAHALV--EDYLGFDILIISGG   50 (400)
T ss_pred             HCCCEEE-----EEEHHHCCCHHHHHHHHHHHHHH--HCCCCCEEEEEECC
T ss_conf             0062578-----98601013048999999999985--25568439999589


No 267
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=23.01  E-value=42  Score=12.52  Aligned_cols=10  Identities=20%  Similarity=0.361  Sum_probs=4.5

Q ss_pred             ECCCCCCHHH
Q ss_conf             0586010000
Q gi|255764461|r  298 HKGEKISKSL  307 (511)
Q Consensus       298 ~~G~KMSKS~  307 (511)
                      .+|-|+|+.+
T Consensus       140 idG~~ls~a~  149 (395)
T PRK06939        140 IDGVRLCKAK  149 (395)
T ss_pred             HHHHHHCCCC
T ss_conf             9999865894


No 268
>PRK09183 transposase/IS protein; Provisional
Probab=22.85  E-value=42  Score=12.49  Aligned_cols=34  Identities=12%  Similarity=0.161  Sum_probs=21.4

Q ss_pred             HHHHHHHHCCCCHHHHHH---------HHHHHHHHHHHHHCCC
Q ss_conf             999999983999899999---------9999999999980889
Q gi|255764461|r   57 KIAKAAQNAGVTTKVFVD---------QNSRNFRDMADVLDIS   90 (511)
Q Consensus        57 ~i~~~A~~~g~~p~e~~~---------~~~~~~~~~~~~~~i~   90 (511)
                      .....|.+++.++.|+..         +-.......++..++.
T Consensus        26 ~~~~~a~~~~~s~~e~L~~Ll~~E~~~R~~rr~~r~lk~A~fp   68 (258)
T PRK09183         26 ALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFP   68 (258)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999887639999999999999999999999999999977999


No 269
>PRK05629 hypothetical protein; Validated
Probab=22.76  E-value=42  Score=12.48  Aligned_cols=43  Identities=16%  Similarity=0.105  Sum_probs=18.5

Q ss_pred             HHCCCCCCC--CCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCH
Q ss_conf             101232333--43033058601000002211100000022111211
Q gi|255764461|r  284 LPLPKKVFS--HGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRY  327 (511)
Q Consensus       284 ~~~p~~i~~--~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~  327 (511)
                      -+.|.++++  |.- ...++|+-|.+...=...+.-..++.|..+|
T Consensus       102 ~p~p~t~LV~~~~~-~dkrkkl~k~l~k~g~v~e~~~l~~~~l~~w  146 (331)
T PRK05629        102 DPSPGTYLIVMHSG-GGRSKSMVKKLEKVAVVHDAAKLKDRDRPGW  146 (331)
T ss_pred             CCCCCEEEEEEECC-CCCCHHHHHHHHCCEEEEECCCCCHHHHHHH
T ss_conf             99996499998458-7510679999860746986688999999999


No 270
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.37  E-value=43  Score=12.43  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=26.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             17997888999988322247897899999999885898036236437
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      ||.+.|   |    +++|=+..+  .--++|.+..+|++|..+|...
T Consensus         2 kI~i~~---~----P~~GG~e~~--v~~La~~L~~~GHeV~vit~~~   39 (371)
T cd04962           2 KIGIVC---Y----PTYGGSGVV--ATELGKALARRGHEVHFITSSR   39 (371)
T ss_pred             EEEEEC---C----CCCCCHHHH--HHHHHHHHHHCCCEEEEEECCC
T ss_conf             799989---9----999869999--9999999997599999995689


No 271
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=22.18  E-value=43  Score=12.40  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf             9999998887543102211000101
Q gi|255764461|r  104 DTCRILWKKISDKGDIYKGCYSGWY  128 (511)
Q Consensus       104 ~~~~~~~~~l~~~G~iy~~~~~~~y  128 (511)
                      ..+++.+..|.+.|+++.....|.|
T Consensus        35 ~tvr~A~~~L~~~G~i~~~~g~G~~   59 (60)
T smart00345       35 TTVREALSRLEAEGLVQRRPGSGTF   59 (60)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCEEE
T ss_conf             9999999999988978996685467


No 272
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=22.07  E-value=43  Score=12.39  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             1799788899998832224789789999999988589803623643
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGT   51 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~   51 (511)
                      ||++.|+..||    ++|=+-.++  --++|.+..+|++|..+|..
T Consensus         1 RI~ivt~~f~P----~iGG~e~~v--~~La~~L~~~Gh~V~Vit~~   40 (398)
T cd03796           1 RICMVSDFFYP----NLGGVETHI--YQLSQCLIKRGHKVVVITHA   40 (398)
T ss_pred             CEEEEECCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECC
T ss_conf             98999488799----999779999--99999999769989999689


No 273
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.99  E-value=43  Score=12.38  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=29.0

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             17997888999988322247897899999999885898036236437
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTD   52 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D   52 (511)
                      |+++.+...||    ++|=+..++  --+++.+..+|++|..+|..+
T Consensus         1 kIL~i~~~f~P----~~GG~e~~~--~~L~~~L~~~Gh~V~v~~~~~   41 (357)
T cd03795           1 RVLHVGKFYPP----DRGGIEQVI--RDLAEGLAARGIEVAVLCASP   41 (357)
T ss_pred             CEEEECCCCCC----CCCCHHHHH--HHHHHHHHHCCCEEEEEECCC
T ss_conf             99999382899----898299999--999999997799899998279


No 274
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=21.92  E-value=44  Score=12.37  Aligned_cols=20  Identities=25%  Similarity=0.306  Sum_probs=15.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             88322247897899999999885898
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLDGL   43 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~G~   43 (511)
                      .|+|.||+      |++.|-.++=..
T Consensus        11 DPiT~GHl------DIi~RA~~lFD~   30 (140)
T PRK13964         11 DPFHNGHI------NILKKALKLFDK   30 (140)
T ss_pred             CCCCCCHH------HHHHHHHHHCCE
T ss_conf             98854289------999999986898


No 275
>PRK11367 hypothetical protein; Provisional
Probab=21.66  E-value=37  Score=12.89  Aligned_cols=18  Identities=11%  Similarity=0.239  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999998088
Q gi|255764461|r   72 FVDQNSRNFRDMADVLDI   89 (511)
Q Consensus        72 ~~~~~~~~~~~~~~~~~i   89 (511)
                      ++++..++.+...-..++
T Consensus        35 ~v~~~N~~lk~~~p~~~~   52 (476)
T PRK11367         35 FIKDFNDAKKKGEHAYDM   52 (476)
T ss_pred             HHHHHHHHHHHCCCCCCE
T ss_conf             999999998753877670


No 276
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=21.39  E-value=43  Score=12.43  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.4

Q ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             0227999999983999899999999
Q gi|255764461|r   53 EHGQKIAKAAQNAGVTTKVFVDQNS   77 (511)
Q Consensus        53 ~hg~~i~~~A~~~g~~p~e~~~~~~   77 (511)
                      +||-.|...|++.|++|++++|-.+
T Consensus         3 ~HGGni~~~a~~~G~~~~~iiDfSs   27 (330)
T PRK05664          3 EHGGRLRRAAQRYGIPLADWLDLST   27 (330)
T ss_pred             CCCCHHHHHHHHHCCCHHHEEECCC
T ss_conf             6885199999996949999155378


No 277
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.21  E-value=29  Score=13.68  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCHH--HHHHHHCCC
Q ss_conf             86422214646024--443220012
Q gi|255764461|r  220 IPDDPQYIMYVWID--ALTNYLTTT  242 (511)
Q Consensus       220 iP~~~~~~~YVWfD--a~~gY~s~~  242 (511)
                      .|.-.+++||-|||  +|.+|++..
T Consensus         2 ~~~~~~ktIef~fdf~SP~ayL~~~   26 (203)
T COG3917           2 PPEGMNKTIEFYFDFSSPYAYLAWP   26 (203)
T ss_pred             CCCCCCCEEEEEEECCCCHHHHHHH
T ss_conf             8778886069999658815876024


No 278
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=21.09  E-value=45  Score=12.25  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHCC--CCE-EECCC--CCCCCH--HHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHCCCC
Q ss_conf             9789999999988589--803-62364--370227--9999999839998999999999999--9999808898
Q gi|255764461|r   27 EMIIADVLARFHRLDG--LDV-LFTTG--TDEHGQ--KIAKAAQNAGVTTKVFVDQNSRNFR--DMADVLDISY   91 (511)
Q Consensus        27 ~~i~~D~~~R~~r~~G--~~v-~~~~g--~D~hg~--~i~~~A~~~g~~p~e~~~~~~~~~~--~~~~~~~i~~   91 (511)
                      +.+.+=+++||++..|  -.| .++++  +|.||.  .+..++.+.|++--=-||==..++.  +..+..|+++
T Consensus        68 GiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~~~~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dV  141 (705)
T TIGR00644        68 GITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEALRELKENGVSLIITVDNGISAHEEIEYAKELGIDV  141 (705)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf             68999999999995099732466626635777788989999998669839998268742699999998669819


No 279
>cd01945 ribokinase_group_B Ribokinase-like subgroup B.  Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily.  Its oligomerization state is unknown at this time. .
Probab=21.01  E-value=45  Score=12.24  Aligned_cols=58  Identities=16%  Similarity=-0.004  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCCC
Q ss_conf             88899998832224789789--999999988589803623--64370227999999983999
Q gi|255764461|r   11 TAIAYPNAQPHIGHAYEMII--ADVLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGVT   68 (511)
Q Consensus        11 ~~~Py~ng~lHlGH~~~~i~--~D~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~~   68 (511)
                      .-+|-+....+.-+......  +==.++.+...|.+|.|+  -|.|.+|..+....+++|++
T Consensus        17 ~~~P~~ge~~~~~~~~~~~GG~~~NvA~~larLG~~~~~ig~vG~D~~G~~l~~~L~~~gV~   78 (284)
T cd01945          17 ASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVD   78 (284)
T ss_pred             CCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf             67899998799804688128589999999998699768999854846899999999982998


No 280
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=20.99  E-value=45  Score=12.23  Aligned_cols=11  Identities=27%  Similarity=0.613  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99888754310
Q gi|255764461|r  108 ILWKKISDKGD  118 (511)
Q Consensus       108 ~~~~~l~~~G~  118 (511)
                      ++|.++.++||
T Consensus        34 ~l~~~i~~nGY   44 (157)
T smart00775       34 KLYRDIQNNGY   44 (157)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999997894


No 281
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form 
Probab=20.90  E-value=46  Score=12.22  Aligned_cols=12  Identities=17%  Similarity=0.169  Sum_probs=4.7

Q ss_pred             HHHHHCCCCCCC
Q ss_conf             999984988000
Q gi|255764461|r  472 KIFDILFVADEN  483 (511)
Q Consensus       472 ~i~~~Lg~~~~~  483 (511)
                      +.+..+|++.+.
T Consensus       218 ~~L~~~Gv~~~~  229 (235)
T cd06217         218 RLLLELGVPRDR  229 (235)
T ss_pred             HHHHHCCCCHHH
T ss_conf             999986997899


No 282
>pfam01467 CTP_transf_2 Cytidylyltransferase. This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase.
Probab=20.88  E-value=46  Score=12.22  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=14.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCC-EEECCC
Q ss_conf             883222478978999999998858980-362364
Q gi|255764461|r   18 AQPHIGHAYEMIIADVLARFHRLDGLD-VLFTTG   50 (511)
Q Consensus        18 g~lHlGH~~~~i~~D~~~R~~r~~G~~-v~~~~g   50 (511)
                      .|+|+||+.-      ..+.++..+.+ |.++.+
T Consensus         7 dP~H~GHl~i------~~~a~~~~~~d~v~~ip~   34 (148)
T pfam01467         7 DPIHLGHLRL------LEQAKELFDLDKIVGVPS   34 (148)
T ss_pred             CCCCHHHHHH------HHHHHHHCCCCEEEEEEC
T ss_conf             9887999999------999999769987999976


No 283
>pfam10929 DUF2811 Protein of unknown function (DUF2811). This is a bacterial family of uncharacterized proteins.
Probab=20.88  E-value=19  Score=14.95  Aligned_cols=11  Identities=27%  Similarity=0.625  Sum_probs=4.3

Q ss_pred             CCCCCCCCCCC
Q ss_conf             34567532343
Q gi|255764461|r  201 KSGLKDLSLSR  211 (511)
Q Consensus       201 ~~gl~Dw~ISR  211 (511)
                      .+|-.|++++|
T Consensus        40 QnG~~~r~vtr   50 (57)
T pfam10929        40 QNGCQDRAVTR   50 (57)
T ss_pred             HCCCCCHHHHH
T ss_conf             84886228899


No 284
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=20.86  E-value=46  Score=12.22  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=17.3

Q ss_pred             HHCCCCCCC--CCCHHHHCCCCC--CCCCCCCCCCE
Q ss_conf             101133430--155667211122--22222233200
Q gi|255764461|r  126 GWYSLRDEA--YYNDDEVYKGAD--GQYYNAQHNPV  157 (511)
Q Consensus       126 ~~y~~~~~~--~~~~~~v~~~~~--~~~~~~~~~p~  157 (511)
                      -|+||.|+-  |..+..+..|.|  ...|..||.+.
T Consensus       907 HY~Cp~Cky~ef~~~g~~~sGyDLpdk~CP~Cg~~l  942 (1436)
T PRK00448        907 HYVCPNCKYSEFFTDGSVGSGYDLPDKDCPKCGTKL  942 (1436)
T ss_pred             CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             225765540000246654657778656686434300


No 285
>KOG0743 consensus
Probab=20.80  E-value=46  Score=12.21  Aligned_cols=32  Identities=9%  Similarity=0.162  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHH
Q ss_conf             6789999999999877503--5899999999999
Q gi|255764461|r  390 ILSVCSRVLQEIRENMQNQ--LIHRALAQVISLV  421 (511)
Q Consensus       390 ll~~l~~~~~~v~~a~e~~--~~~~Al~~i~~l~  421 (511)
                      ++....-.+.++.+.+-..  +-..|++.+.+..
T Consensus       398 l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l  431 (457)
T KOG0743         398 LIEETEVTPAQVAEELMKNKNDADVALKGLVEAL  431 (457)
T ss_pred             HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             7633746899999998635653889999999998


No 286
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=20.67  E-value=46  Score=12.19  Aligned_cols=11  Identities=27%  Similarity=0.453  Sum_probs=5.3

Q ss_pred             HHHHHHHHHCC
Q ss_conf             98887543102
Q gi|255764461|r  109 LWKKISDKGDI  119 (511)
Q Consensus       109 ~~~~l~~~G~i  119 (511)
                      ...+|.++|.|
T Consensus         6 Lv~~l~~~g~i   16 (205)
T pfam01135         6 LIENLKNYGVI   16 (205)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999983998


No 287
>pfam06354 consensus
Probab=20.32  E-value=47  Score=12.14  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=14.4

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCHH
Q ss_conf             36437022799999998399989
Q gi|255764461|r   48 TTGTDEHGQKIAKAAQNAGVTTK   70 (511)
Q Consensus        48 ~~g~D~hg~~i~~~A~~~g~~p~   70 (511)
                      |+||...|.++....--.+=+|.
T Consensus        60 IPgTg~~G~~~AaalG~v~Gd~~   82 (429)
T pfam06354        60 VPGTGKVGLVIAAALGALLGKSE   82 (429)
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCC
T ss_conf             48999847699999988717940


No 288
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=20.26  E-value=47  Score=12.13  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             9999999988589803623643702
Q gi|255764461|r   30 IADVLARFHRLDGLDVLFTTGTDEH   54 (511)
Q Consensus        30 ~~D~~~R~~r~~G~~v~~~~g~D~h   54 (511)
                      ..--+++.+..+||+|..+|..+..
T Consensus        15 ~~~~La~~L~~~Gh~V~vit~~~~~   39 (359)
T cd03808          15 FRLPLIKALRAAGYEVHVVAPPGDE   39 (359)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             9999999999769999999707987


No 289
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=20.18  E-value=47  Score=12.12  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             HHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCCCH
Q ss_conf             99988589803623--643702279999999839998
Q gi|255764461|r   35 ARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGVTT   69 (511)
Q Consensus        35 ~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~~p   69 (511)
                      +..+...|.+|.++  -|.|.+|..+....++.|++.
T Consensus        43 A~~la~LG~~~~~~~~vG~D~~G~~i~~~l~~~gV~~   79 (292)
T cd01174          43 AVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDV   79 (292)
T ss_pred             HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             9999987998699997458807899999998628875


No 290
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=20.04  E-value=47  Score=12.10  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             HHHHHHHHCCCCEEEC--CCCCCCCHHHHHHHHHCCCCH
Q ss_conf             9999988589803623--643702279999999839998
Q gi|255764461|r   33 VLARFHRLDGLDVLFT--TGTDEHGQKIAKAAQNAGVTT   69 (511)
Q Consensus        33 ~~~R~~r~~G~~v~~~--~g~D~hg~~i~~~A~~~g~~p   69 (511)
                      -.+..++..|.+|.|+  .|.|.+|..+....++.|+..
T Consensus        44 NvA~~la~LG~~~~~i~~vG~D~~G~~i~~~L~~~gV~~   82 (304)
T cd01172          44 NVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGIDT   82 (304)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             999999986996799985069868999999999709975


Done!