HHsearch alignment for GI: 255764461 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=0 Score=451.23 Aligned_cols=291 Identities=24% Similarity=0.292 Sum_probs=218.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 88817997888999988322247897899999999885898036236437022799999998399989999999999999
Q gi|255764461|r 3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD 82 (511)
Q Consensus 3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~ 82 (511)
T Consensus 8 ~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~~~~~F~~ 85 (301)
T pfam01406 8 GKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITAYTK 85 (301)
T ss_pred CEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9378997899068--99752233689999999999997499469996778631799999998098653799999999998
Q ss_pred HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf 99980889-88674778888999999998887543102211000-10113343015566721112222222233200003
Q gi|255764461|r 83 MADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYS-GWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWM 160 (511)
Q Consensus 83 ~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~-~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~ 160 (511)
T Consensus 86 ~~~~L~I~~~d~~~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~~~~-------yg---~l~---~~~~~~~ 150 (301)
T pfam01406 86 DMDALNVLPPDLEPRVTE--HIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPD-------YG---KLS---GQNLEQL 150 (301)
T ss_pred HHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCC-------CC---CCC---CCCHHHH
T ss_conf 899849828986877543--57999999999997797687269988996667465-------44---046---4357777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 45443446664444434443333210006765457754103456753234333777657864222146460244432200
Q gi|255764461|r 161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT 240 (511)
Q Consensus 161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s 240 (511)
T Consensus 151 ~~~~--------~~~~~~~k~~~~df~Lwk~~~--------~~~~~~----~~-pwg~~~PgW-----hie~~~~~~~~- 203 (301)
T pfam01406 151 EAGA--------RGEVGEGKRDPLDFALWKASK--------EGEPSW----DS-PWGKGRPGW-----HIECSAMARKY- 203 (301)
T ss_pred HCCC--------CCCCCCCCCCCCHHHEECCCC--------CCCCCC----CC-CCCCCCCCC-----CEEEEHHHHHH-
T ss_conf 5257--------766443325803533211456--------678775----57-777898975-----46650677874-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHH
Q ss_conf 123467654310002411000045643210001024776543-3101232333430330586010000022111000000
Q gi|255764461|r 241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEE 319 (511)
Q Consensus 241 ~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~ 319 (511)
T Consensus 204 ----~---------g~~~DiH~~G~Di~~pH~~~~~A~~~a~~~~~~~~~~~h~G~l~~~G~KMSKSlGNvv~~~dl~~~ 270 (301)
T pfam01406 204 ----L---------GSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKR 270 (301)
T ss_pred ----C---------CCCCCEECCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCEECCCCCCCCCCHHHHHHH
T ss_conf ----1---------898733027651013552419999998519995149998527987883866647873779999876
Q ss_pred CCCCCCCHHHEEECCCCCCCEECCCCCCCCHH
Q ss_conf 22111211100002478730111222111001
Q gi|255764461|r 320 VGVDALRYFLVREIACGKDGFYDKDGLKKRVN 351 (511)
Q Consensus 320 ~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n 351 (511)
T Consensus 271 ~g~d~~Ryfll-~~~y~~~~~fs~~~l~~a~n 301 (301)
T pfam01406 271 YDPRILRYFLL-SVHYRSPLDFSEELLEQAKN 301 (301)
T ss_pred CCHHHHHHHHH-HCCCCCCCCCCHHHHHHHHC
T ss_conf 89999999998-46589987879999997239