HHsearch alignment for GI: 255764461 and conserved domain: pfam01406

>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00  E-value=0  Score=451.23  Aligned_cols=291  Identities=24%  Similarity=0.292  Sum_probs=218.4

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             88817997888999988322247897899999999885898036236437022799999998399989999999999999
Q gi|255764461|r    3 EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRD   82 (511)
Q Consensus         3 ~~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~   82 (511)
T Consensus         8 ~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~~~~~F~~   85 (301)
T pfam01406         8 GKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITAYTK   85 (301)
T ss_pred             CEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9378997899068--99752233689999999999997499469996778631799999998098653799999999998


Q ss_pred             HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf             99980889-88674778888999999998887543102211000-10113343015566721112222222233200003
Q gi|255764461|r   83 MADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYS-GWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWM  160 (511)
Q Consensus        83 ~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~-~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~  160 (511)
T Consensus        86 ~~~~L~I~~~d~~~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~~~~-------yg---~l~---~~~~~~~  150 (301)
T pfam01406        86 DMDALNVLPPDLEPRVTE--HIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPD-------YG---KLS---GQNLEQL  150 (301)
T ss_pred             HHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCC-------CC---CCC---CCCHHHH
T ss_conf             899849828986877543--57999999999997797687269988996667465-------44---046---4357777


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             45443446664444434443333210006765457754103456753234333777657864222146460244432200
Q gi|255764461|r  161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT  240 (511)
Q Consensus       161 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s  240 (511)
T Consensus       151 ~~~~--------~~~~~~~k~~~~df~Lwk~~~--------~~~~~~----~~-pwg~~~PgW-----hie~~~~~~~~-  203 (301)
T pfam01406       151 EAGA--------RGEVGEGKRDPLDFALWKASK--------EGEPSW----DS-PWGKGRPGW-----HIECSAMARKY-  203 (301)
T ss_pred             HCCC--------CCCCCCCCCCCCHHHEECCCC--------CCCCCC----CC-CCCCCCCCC-----CEEEEHHHHHH-
T ss_conf             5257--------766443325803533211456--------678775----57-777898975-----46650677874-


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHH-HHHCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHH
Q ss_conf             123467654310002411000045643210001024776543-3101232333430330586010000022111000000
Q gi|255764461|r  241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSA-NLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEE  319 (511)
Q Consensus       241 ~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~  319 (511)
T Consensus       204 ----~---------g~~~DiH~~G~Di~~pH~~~~~A~~~a~~~~~~~~~~~h~G~l~~~G~KMSKSlGNvv~~~dl~~~  270 (301)
T pfam01406       204 ----L---------GSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKR  270 (301)
T ss_pred             ----C---------CCCCCEECCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCEECCCCCCCCCCHHHHHHH
T ss_conf             ----1---------898733027651013552419999998519995149998527987883866647873779999876


Q ss_pred             CCCCCCCHHHEEECCCCCCCEECCCCCCCCHH
Q ss_conf             22111211100002478730111222111001
Q gi|255764461|r  320 VGVDALRYFLVREIACGKDGFYDKDGLKKRVN  351 (511)
Q Consensus       320 ~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n  351 (511)
T Consensus       271 ~g~d~~Ryfll-~~~y~~~~~fs~~~l~~a~n  301 (301)
T pfam01406       271 YDPRILRYFLL-SVHYRSPLDFSEELLEQAKN  301 (301)
T ss_pred             CCHHHHHHHHH-HCCCCCCCCCCHHHHHHHHC
T ss_conf             89999999998-46589987879999997239