RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (511 letters)



>gnl|CDD|183364 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
          Length = 511

 Score =  725 bits (1875), Expect = 0.0
 Identities = 277/512 (54%), Positives = 367/512 (71%), Gaps = 10/512 (1%)

Query: 5   EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN 64
           +K YI+T I YPN +PHIGHAY  + ADVLARF RL G DV F TGTDEHGQKI + A+ 
Sbjct: 1   KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE 60

Query: 65  AGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCY 124
           AG++ +   D+NS  F+ + + L+ISYDDFIRTT+ RH +  + +++++   GDIY G Y
Sbjct: 61  AGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKY 120

Query: 125 SGWYSLRDEAYYNDDEVYKGADGQYYNAQHN-PVQWMEEEGYFFRLSAYQDKLLSYYESH 183
            GWY +R E +Y + E+    +  Y       PV+W+EEE YFFRLS YQDKLL  YE++
Sbjct: 121 EGWYCVRCEEFYTESEL---IEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEAN 177

Query: 184 PEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTG 243
           P+FI P  RRNEVISFVKSGLKDLS+SR  FDWGI +P DP++++YVW DALTNYLT  G
Sbjct: 178 PDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALG 237

Query: 244 YLDNP---DGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG 300
           Y D+         K+WPAD+H+IGKDILRFHA+YWPAFL++A LPLPK+VF+HGF+   G
Sbjct: 238 YPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDG 297

Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
           EK+SKSLGNVIDP ++++E GVDA+RYFL+REI  G+DG + ++    R+NADLAN +GN
Sbjct: 298 EKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGN 357

Query: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
           L  R++SMI K++DG +P PGA TE+DE++L   + +L+ +R  M N    +AL  +++L
Sbjct: 358 LAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILAL 417

Query: 421 VSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL-FV 479
           V   ++Y D Q PW L KT+P+R +TVLY  +EV+R +A+LLQ  +P+LA KI D L   
Sbjct: 418 VRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477

Query: 480 ADENRCFQSL-DQRLKPGFMLHKTFDPIFPRF 510
            DENR F +L   RL PG  L K  +PIFPR 
Sbjct: 478 EDENRDFAALSWGRLAPGTTLPKP-EPIFPRL 508


>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
          Length = 648

 Score =  681 bits (1759), Expect = 0.0
 Identities = 246/513 (47%), Positives = 351/513 (68%), Gaps = 9/513 (1%)

Query: 2   KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
             ++  YI+T I YPN +PHIGHAY  I AD LAR+ RL G DV F TGTDEHGQKI +A
Sbjct: 1   MMKKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQA 60

Query: 62  AQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYK 121
           A+ AG T + +VD+ S  F+++   LDISYD FIRTT++RH    + +++K+ ++GDIYK
Sbjct: 61  AEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120

Query: 122 GCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYE 181
           G Y GWY +  E ++ + ++    DG         V+ ++EE YFFR+S YQD+LL YYE
Sbjct: 121 GEYEGWYCVSCETFFTESQL---VDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYE 177

Query: 182 SHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT 240
            +P+FI P  R+NE+I +F+K GL+DLS+SR +FDWGI +P DP++++YVWIDAL NY+T
Sbjct: 178 ENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYIT 237

Query: 241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG 300
             GY  + D    KFWPAD+H++GKDILRFHAIYWP  L++  LPLPKKVF+HG+ L K 
Sbjct: 238 ALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKD 297

Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
            K+SKS GNV+DP E+++  G+DALRY+L+RE+  G DG +  + L +R+N+DLAN +GN
Sbjct: 298 GKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGN 357

Query: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
           L++R+V+MI K +DG IP PG  TE DE ++++    L+   E M+     RAL +V  L
Sbjct: 358 LLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKL 417

Query: 421 VSEVDRYFDAQKPWELKK--TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILF 478
           +S  ++Y D   PW L K     +R +TV+Y   E +R++A+LL  F+P+ + KIF+ L 
Sbjct: 418 ISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLG 477

Query: 479 VADENRCFQSLDQ--RLKPGFMLHKTFDPIFPR 509
           + +E   ++SL +   L  G  + K  +P+FPR
Sbjct: 478 LEEELTSWESLLEWGGLPAGTKVAKG-EPLFPR 509


>gnl|CDD|161858 TIGR00398, metG, methionyl-tRNA synthetase.  The methionyl-tRNA
           synthetase (metG) is a class I amino acyl-tRNA ligase.
           This model appears to recognize the methionyl-tRNA
           synthetase of every species, including eukaryotic
           cytosolic and mitochondrial forms. The UPGMA difference
           tree calculated after search and alignment according to
           this model shows an unusual deep split between two
           families of MetG. One family contains forms from the
           Archaea, yeast cytosol, spirochetes, and E. coli, among
           others. The other family includes forms from yeast
           mitochondrion, Synechocystis sp., Bacillus subtilis, the
           Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
           The E. coli enzyme is homodimeric, although monomeric
           forms can be prepared that are fully active. Activity of
           this enzyme in bacteria includes aminoacylation of
           fMet-tRNA with Met; subsequent formylation of the Met to
           fMet is catalyzed by a separate enzyme. Note that the
           protein from Aquifex aeolicus is split into an alpha
           (large) and beta (small) subunit; this model does not
           include the C-terminal region corresponding to the beta
           chain.
          Length = 530

 Score =  488 bits (1258), Expect = e-138
 Identities = 198/533 (37%), Positives = 300/533 (56%), Gaps = 37/533 (6%)

Query: 8   YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV 67
            I+TA+ Y N +PH+GHAY  I+ADV AR+ RL G +VLF  GTDEHG KI   A+  G+
Sbjct: 2   LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGL 61

Query: 68  TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGW 127
           T K  VD+    F+D    L+IS+D FIRTT++ H +  + +++K+ + G IY+      
Sbjct: 62  TPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQL 121

Query: 128 YSLRDEAYYNDDEV-----YKGADGQYYNAQHN------PVQ--------------WMEE 162
           Y    E +  D  V       G++    +          P +                + 
Sbjct: 122 YCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDS 181

Query: 163 EGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIP 221
           E YFFRLSA++ +L  +   +PE   P         +++K GLKDL+++R    WGI +P
Sbjct: 182 EHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVP 241

Query: 222 DDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWP 276
           +DP  ++YVW DAL  Y+++ G L        K+W  D     +H IGKDI+RFH IYWP
Sbjct: 242 NDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWP 301

Query: 277 AFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACG 336
           A L+   LPLP +VFSHG++  +G K+SKSLGNV+DP +++   G D LRY+L++E   G
Sbjct: 302 AMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLG 361

Query: 337 KDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSR 396
           KDG +  +   +RVNADLAN +GNL++R++  I K ++G++P+     E D+ +L + + 
Sbjct: 362 KDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINE 421

Query: 397 VLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIR 456
            L++I E +++    +AL +++ L    ++Y D  KPWEL K +P R   +L V   +IR
Sbjct: 422 ALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSP-RLKELLAVCSMLIR 480

Query: 457 QLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHKTFDPIFPR 509
            L+ILL   +PKL+ KI   L    E      L +    G  L+K  +P+F +
Sbjct: 481 VLSILLYPIMPKLSEKILKFLNFELEWDFKLKLLE----GHKLNK-AEPLFSK 528


>gnl|CDD|117876 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M).  This family
           includes methionyl tRNA synthetases.
          Length = 388

 Score =  460 bits (1187), Expect = e-130
 Identities = 182/390 (46%), Positives = 243/390 (62%), Gaps = 34/390 (8%)

Query: 8   YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV 67
            I+TA+ Y N  PHIGH Y  I ADV AR+ RL G DVLF TGTDEHG KI  AA+  GV
Sbjct: 2   LITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGV 61

Query: 68  TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGW 127
           T +  VD+    F+++    +IS+DDFIRTT +RH +  +  + K+ +KGDIY+G Y GW
Sbjct: 62  TPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGW 121

Query: 128 YSLRDEAYYNDDEV--------YKGADG-QYYNAQH--------NPV-------QWM-EE 162
           Y + DE +  D  V         + A G Q              NP          + EE
Sbjct: 122 YCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELKEE 181

Query: 163 EGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI-SFVKSGLKDLSLSRKTFDWGIKIP 221
           E YFFRLS +QDKLL + + +P+   P    NEV+ S++K GLKDLS++R   DWGI +P
Sbjct: 182 EHYFFRLSKFQDKLLEWIKENPD--EPPSNVNEVVLSWLKEGLKDLSITR-DLDWGIPVP 238

Query: 222 DDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPAD-----LHVIGKDILRFHAIYWP 276
            DP  ++YVW DAL  Y++ T YL        KFW  D     +H IGKDI+RFHAIYWP
Sbjct: 239 GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWP 298

Query: 277 AFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACG 336
           A L++A LPLP +VF+HG++  +G K+SKS GNV+DP E+++  GVDALRY+L RE   G
Sbjct: 299 AMLMAAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEG 358

Query: 337 KDGFYDKDGLKKRVNADLANGIGNLVSRSV 366
           KDG +  +   +RVN++LAN +GNLV+R++
Sbjct: 359 KDGDFSWEDFVERVNSELANDLGNLVNRTL 388


>gnl|CDD|183390 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
          Length = 556

 Score =  433 bits (1115), Expect = e-122
 Identities = 172/545 (31%), Positives = 275/545 (50%), Gaps = 46/545 (8%)

Query: 4   REKLYISTAIAYPNAQPHIGHAYE-MIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA 62
             ++ I++A  Y N   H+GH     + ADV AR+ RL G +VLF +G+DEHG  I  AA
Sbjct: 2   MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA 61

Query: 63  QNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122
           +  GVT +   D+     ++    L ISYD F RTT   HH+  +  + K+ + G IYK 
Sbjct: 62  KKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK 121

Query: 123 CYSGWYSLRDEAYYNDDEV-----YKGADGQYYN------AQHNPVQ------------- 158
                Y   D  +  D  V     Y G +G   +      A  +P               
Sbjct: 122 TIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTP 181

Query: 159 -WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWG 217
            + E E +F  L A+ ++L ++ ES      P    N  ++++K GLK  +++R   DWG
Sbjct: 182 EFRETEHFFLDLPAFAERLRAWIES--SGDWPPNVLNFTLNWLKEGLKPRAITR-DLDWG 238

Query: 218 IKIP--DDPQYIMYVWIDALTNYLTTTGYL----DNPDGSKAKFWP----ADLHVIGKDI 267
           I +P       + YVW DA+  Y++ +        +P+  K +FW        + IGKD 
Sbjct: 239 IPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWK-EFWLDPETKSYYFIGKDN 297

Query: 268 LRFHAIYWPAFLLSAN--LPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDAL 325
           + FH+I WPA LL +   L LP ++ S  ++  +G K SKS G  I   + +E    D L
Sbjct: 298 IPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYL 357

Query: 326 RYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTE 385
           RY+L        D  +  +   +RVN++LA+  GNLV+R +S I K + G I  PG   +
Sbjct: 358 RYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGG-IVPPGELGD 416

Query: 386 SDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRAS 445
            D  +++    + +E+ E ++     +AL +++ L  E ++Y D + PW+L KT+ +RA+
Sbjct: 417 EDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAA 476

Query: 446 TVLYVTVEVIRQLAILLQAFVPKLANKIFDIL-FVADENRCFQSLDQRLKPGFMLHKTFD 504
           TVLY  + ++R LA+LL  F+P  A KI+++L     E   ++SL   L PG  ++K  +
Sbjct: 477 TVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESLK-PLLPGHPINK-PE 534

Query: 505 PIFPR 509
           P+F +
Sbjct: 535 PLFKK 539


>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
          Length = 616

 Score =  359 bits (921), Expect = 1e-99
 Identities = 195/517 (37%), Positives = 291/517 (56%), Gaps = 14/517 (2%)

Query: 3   EREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAA 62
           E +   ++T + Y NA PH+G AY  I AD +ARF RL G  V+F TGTDEHG+KIA +A
Sbjct: 67  EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126

Query: 63  QNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG 122
              G       D  S+++R +   LDI+YD FIRTT+ +H    +  + ++   GDIY+ 
Sbjct: 127 AANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRA 186

Query: 123 CYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYES 182
            Y G Y +  E Y ++ E+    +         P    +E+ YFF LS YQ  L      
Sbjct: 187 DYEGLYCVNCEEYKDEKELL---ENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQ 243

Query: 183 HPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNY---L 239
           +P F+ P  R NEV S++KSGL+D S+SR   DWGI +PDD +  +YVW DAL  Y   L
Sbjct: 244 NPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISAL 303

Query: 240 TTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHK 299
           T      N + + +  WPA LH+IGKDILRFHA+YWPA L+SA L LPK VF HGF+   
Sbjct: 304 TEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKD 363

Query: 300 GEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIG 359
           G K+ KSLGN ++P E++++ G DA+RYF +RE+  G DG Y +D   K VNA LAN IG
Sbjct: 364 GMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423

Query: 360 NLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVIS 419
           NL++R++ ++ K+ +  +            +     +++++ + N +N  +  A   V+ 
Sbjct: 424 NLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLE 483

Query: 420 LVSEVDRYFDAQKPWELKK---TNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDI 476
           + +  + Y D + PW L K    + + A+  L + +EV+R +A+ L    P L+ +I+  
Sbjct: 484 IGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQ 543

Query: 477 L-FVADENRCFQSLDQR---LKPGFMLHKTFDPIFPR 509
           L +  D+       D +   LK G ++ +   P+F R
Sbjct: 544 LGYSEDQFNSITWSDTKWGGLKGGQVMEQA-SPVFAR 579


>gnl|CDD|178889 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
          Length = 673

 Score =  236 bits (605), Expect = 1e-62
 Identities = 100/331 (30%), Positives = 164/331 (49%), Gaps = 26/331 (7%)

Query: 161 EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDW-GIK 219
           E E +FF+L  +++ L  +     E  L     N++  +++ GL+D  +SR    + G +
Sbjct: 183 ESEHFFFKLPRFEEFLKEWITRSGE--LQPNVANKMKEWLEEGLQDWDISR-DAPYFGFE 239

Query: 220 IPDDPQYIMYVWIDALTNYLTTT-GYLDNPDGSK-AKFWPAD-----LHVIGKDILRFHA 272
           IP  P  + YVW+DA   Y+++T    D   G    ++W  D      H IGKDI+ FH 
Sbjct: 240 IPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHT 299

Query: 273 IYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVRE 332
           ++WPA L  A   LP  VF+HGF+  +G K+SKS G  I     ++ +  D LRY+L   
Sbjct: 300 LFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLA-- 357

Query: 333 IACGKDGFYDKD------GLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTES 386
               K      D        ++RVN++L   + N  SR+   I K +DG +P       +
Sbjct: 358 ---AKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPD----ALA 410

Query: 387 DESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRAST 446
           D  +L       ++I E  + +   +AL ++++L    ++Y D  +PW+L K + +R   
Sbjct: 411 DPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQA 470

Query: 447 VLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
           V  V + + R LAI L+  +P+LA +    L
Sbjct: 471 VCSVGLNLFRALAIYLKPVLPELAERAEAFL 501



 Score = 95.2 bits (238), Expect = 4e-20
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 6   KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA 65
           K+ ++ A+ Y N   H+GH  E I AD+  R+ R+ G +VLF    D HG  I   A+  
Sbjct: 3   KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE 62

Query: 66  GVTTKVFVD----QNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIYK 121
           G+T +  +     ++ R+F        IS+D++  T  + + +  + ++ K+ + G IY+
Sbjct: 63  GITPEELIARYHAEHKRDFAGF----GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118


>gnl|CDD|178220 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
          Length = 801

 Score =  141 bits (357), Expect = 4e-34
 Identities = 133/530 (25%), Positives = 237/530 (44%), Gaps = 77/530 (14%)

Query: 4   REKLYISTAIAYPNAQPHIGHAYEMII-----ADVLARFHRLDGLDVLFTTGTDEHGQKI 58
           +  + I++A+ Y N  PH+G+    II     ADV AR+ RL G + ++  GTDE+G   
Sbjct: 16  KRNILITSALPYVNNVPHLGN----IIGCVLSADVFARYCRLRGYNAIYICGTDEYGTAT 71

Query: 59  AKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGD 118
              A     T K   D+     +++ D  DIS+D F RT+  +  + C+ ++KK+ +   
Sbjct: 72  ETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNW 131

Query: 119 IYKGCYSGWYSLRDEAYYNDDEV----------YKGADG-QYYNAQH--NPVQWM----- 160
           + +      Y    + +  D  V          Y  A G Q        NP + +     
Sbjct: 132 LSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCK 191

Query: 161 ---------EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVI---SFVKSGLKDLS 208
                    + +  F  L   +DKL+ Y       +     +N +    ++++ GLK   
Sbjct: 192 VCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRC 249

Query: 209 LSRKTFDWGIKIPDDPQY---IMYVWIDALTNYLT-TTGYLDNPDGSKAKFW--PADLHV 262
           ++R    WG+ +P   +Y   + YVW DA   Y++ T  Y   P+  K  +W  P ++ +
Sbjct: 250 ITRD-LKWGVPVPL-EKYKDKVFYVWFDAPIGYVSITACY--TPEWEK--WWKNPENVEL 303

Query: 263 ---IGKDILRFHAIYWPAFLL--SANLPLPKKVFSHGFILHKGEKISKS-----LGNVID 312
              +GKD + FH + +P+ LL    N  + K +    ++ ++G K SKS      GN   
Sbjct: 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAK 363

Query: 313 PIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKD 372
              +  EV     RY+L+       D  +    L+ ++N++L N +GN ++R +S I K 
Sbjct: 364 DTNIPVEV----WRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKP 419

Query: 373 ----YDGMIP-TPGAFTESDESILSVCSRV---LQEIRENMQNQLIHRALAQVISLVSEV 424
               Y  +IP  PGA  ES      +  +V   +++  E M+   + + L   +S+ SE 
Sbjct: 420 PGAGYGSVIPDAPGA--ESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEG 477

Query: 425 DRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIF 474
           + Y    + W+L K +    + V+  +V ++  LA LL+ F+P  + ++ 
Sbjct: 478 NAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVL 527


>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase.  The valyl-tRNA synthetase
           (ValS) is a class I amino acyl-tRNA ligase and is
           particularly closely related to the isoleucyl tRNA
           synthetase.
          Length = 861

 Score =  113 bits (285), Expect = 1e-25
 Identities = 93/376 (24%), Positives = 156/376 (41%), Gaps = 54/376 (14%)

Query: 154 HNPVQWMEEEGYFFRLSAYQDKLL-SYYESHPEFILPIERRNEVISFVKSGLKDLSLSRK 212
              V+ +  + +F ++    DK L +  E   +F+ P       ++++++ +KD  +SR+
Sbjct: 347 GTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFV-PKRMEKRYLNWLRN-IKDWCISRQ 404

Query: 213 TFDWGIKIP-------------------DDPQYIMYV------------WIDALTNYLTT 241
              WG +IP                   DD                   W  +     +T
Sbjct: 405 LI-WGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFST 463

Query: 242 TGYLDNPDGSKAKFWPADLHVIGKDILRFHAIY--WPAFLLSANLPLPKKVFSHGFIL-H 298
            G+ D     K KF+P DL V G DI+ F      + +  L+  +P  K+V+ HG +   
Sbjct: 464 LGWPDETKDLK-KFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPF-KEVYIHGLVRDE 521

Query: 299 KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGI 358
           +G K+SKSLGNVIDP++VIE+ G DALR+ L   +  G D  +D   ++     +  N +
Sbjct: 522 QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVES--ARNFLNKL 579

Query: 359 GNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVI 418
            N  SR V M L D   +       + +D  ILS  +R ++E+R+ +         A+  
Sbjct: 580 WN-ASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDK----YRFAEAA 634

Query: 419 SLVSE------VDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANK 472
             + E       D Y +  K   L   N             V+ +   LL  F+P +  +
Sbjct: 635 KALYEFIWNDFCDWYIELVKY-RLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEE 693

Query: 473 IFDILFVADENRCFQS 488
           I+       ++   QS
Sbjct: 694 IWQHFKEGADSIMLQS 709



 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 15  YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIA---KAAQNAGVTTKV 71
                 HIGHA    I D++AR+ R+ G +VL+  GTD  G  IA   K  +  G   K 
Sbjct: 43  NVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAG--IATQVKVEKKLGAEGKT 100

Query: 72  FVDQNSRNFRDMADVLDISYDDFIRTTEKR 101
             D     FR+            I+   KR
Sbjct: 101 KHDLGREEFREKIWEWKEESGGTIKNQIKR 130


>gnl|CDD|180364 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
          Length = 975

 Score = 90.6 bits (226), Expect = 1e-18
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 288 KKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGL 346
           K V  HG +L   G+K+SKSLGN +DP EV ++ G DALR++L+   A  +D  + +DG+
Sbjct: 577 KNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGV 636

Query: 347 KKRVNADLANGIGNLVSRSVS-MILKDYDGMIPTP--GAFTESDESILSVCSRVLQEIRE 403
           ++ V   L   + N+ S  V    L  +D         +  E D  ILS  + +++E+ E
Sbjct: 637 REVVRKFL-LTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTE 695

Query: 404 NMQNQLIHRALAQVISLVSEV---------DRYFDAQKPWELKKTNPDRAS-TVLYVTVE 453
            + N  I +A   +   V ++          R+      W+ +      A+   LY    
Sbjct: 696 ALDNYDITKAARAIRDFVDDLSNWYIRRSRRRF------WKEEDDPDKLAAYATLY---T 746

Query: 454 VIRQLAILLQAFVPKLANKIFDILFVADENR 484
           V+  L+ L   F P +A +I+  L   D   
Sbjct: 747 VLETLSRLAAPFTPFIAEEIYQNLTREDAPE 777



 Score = 40.5 bits (96), Expect = 0.001
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 39/148 (26%)

Query: 15  YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNA-GVTTK--- 70
             N  PH GH     I DV+ R+  + G  V    G D HG  +    +   G++ K   
Sbjct: 51  TANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDI 110

Query: 71  ---------------VF--VDQNSRNFRDMADVLD-----ISYD-DFIRTTEKRHHDTCR 107
                          V    D+       +   +D      + D +++ +          
Sbjct: 111 EEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMES---------- 160

Query: 108 ILW--KKISDKGDIYKGCYSGWYSLRDE 133
           + W  K++ DKG +YKG     Y  R E
Sbjct: 161 VWWALKQLYDKGLLYKGYRVVPYCPRCE 188


>gnl|CDD|161854 TIGR00392, ileS, isoleucyl-tRNA synthetase.  The isoleucyl tRNA
           synthetase (IleS) is a class I amino acyl-tRNA ligase
           and is particularly closely related to the valyl tRNA
           synthetase. This model may recognize IleS from every
           species, including eukaryotic cytosolic and
           mitochondrial forms.
          Length = 861

 Score = 87.4 bits (217), Expect = 8e-18
 Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 218 IKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYW 275
            ++PD    ++ VW D+ +    +  Y    +    + +PAD  + G D  R  F++   
Sbjct: 530 RRVPD----VLDVWFDSGSMPYASIHYPFENE-KFKEVFPADFILEGSDQTRGWFYSSLA 584

Query: 276 PAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA 334
               L    P  K V +HGF L  KG K+SKSLGNV+DP++VI + G D LR ++     
Sbjct: 585 IGTALFGQAPY-KNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-D 642

Query: 335 CGKDGFYDKDGLKKRVNADLANGIGNLVSRSVS-MILKDYDGM--IPTPGAFTESDESIL 391
             +D  +  + L K+V         N     ++   L  +D +        F E D  IL
Sbjct: 643 PWEDLRFSDEIL-KQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWIL 701

Query: 392 SVCSRVLQEIRENMQNQLIHRALAQVISLVSEV--DRYFDAQKP--WELKKTNPDRAS-T 446
           S  + +++E+ E ++    H+ L  +   + E   + Y    +   +   K N  RA+ T
Sbjct: 702 SRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQT 761

Query: 447 VLYVTVEVIRQLAILLQAFVPKLANKIF-DILFVADENRCFQSLDQRLKPGFML 499
            LY     +  L  LL  F+P  A +I+ ++    +E     +L   +   F+ 
Sbjct: 762 TLY---YALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFID 812



 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 15  YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIA-KAAQNAGVTTK 70
           Y N   H+GHA   I+ D++ R+  + G +V    G D HG  I  K  +  G++ K
Sbjct: 46  YANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGK 102


>gnl|CDD|180225 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
          Length = 874

 Score = 85.5 bits (213), Expect = 3e-17
 Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 48/247 (19%)

Query: 245 LDNPDGSK--AKFWPADLHVIGKDILRFHAIYWPA--------------FLLSANLPLPK 288
           L  P+ ++   +F+P  + V G DI+ F    W A              F         K
Sbjct: 459 LGWPEKTEDLKRFYPTSVLVTGFDIIFF----WVARMIMMGLHFTGQVPF---------K 505

Query: 289 KVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLK 347
            V+ HG +   +G K+SKS GNVIDP+++I++ G DALR+ L    + G+D  +D++   
Sbjct: 506 DVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEE--- 562

Query: 348 KRVNA--DLANGIGNLVSRSVSM-ILKDYDGMIPTPGAFTESDESILSVCSRVLQEIREN 404
            RV    + AN + N  SR V M +     G +P P   + +D  ILS  +R + E+ E 
Sbjct: 563 -RVEGYRNFANKLWN-ASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEA 620

Query: 405 MQNQLIHRALAQVISLVSEVDRYFDAQKPW--ELKKT--NPDRASTVLYVTVEVIRQLAI 460
           +       A   +   +   + + D    W  EL K                 V+ Q+  
Sbjct: 621 LDKYRFDEAARALYEFI--WNEFCD----WYLELAKPVLQEAAKRATRATLAYVLEQILR 674

Query: 461 LLQAFVP 467
           LL  F+P
Sbjct: 675 LLHPFMP 681



 Score = 45.5 bits (109), Expect = 4e-05
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 21 HIGHAYEMIIADVLARFHRLDGLDVLFTTGTD 52
          H+GHA    + D+L R+ R+ G + L+  GTD
Sbjct: 52 HMGHALNNTLQDILIRYKRMQGYNTLWLPGTD 83


>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
          Length = 800

 Score = 80.2 bits (199), Expect = 1e-15
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 17/194 (8%)

Query: 227 IMYVWID-ALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIY--WPAFLLSAN 283
           +M  W   ++T  L  TG+  + D  +  F P DL   G DI+R    Y    A+LL+  
Sbjct: 457 VMDTWATSSIT-PLIVTGWERDEDLFEKVF-PMDLRPQGHDIIRTWLFYTILRAYLLTGK 514

Query: 284 LPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYD 342
           LP  K +   G +L   G+K+SKS GNV+ P E++E+ G DA+RY+       G D  +D
Sbjct: 515 LPW-KNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFD 572

Query: 343 KDGLK--KRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQE 400
           +  +K  +R    L   + N  SR V     D +            D  IL+  ++V+++
Sbjct: 573 EKQVKIGRR----LLTKLWN-ASRFVLHFSADPE--PDKAEVLEPLDRWILAKLAKVVEK 625

Query: 401 IRENMQNQLIHRAL 414
             E ++N    +AL
Sbjct: 626 ATEALENYDFAKAL 639



 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 3   EREKLY-ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
           ER+ +Y I T     +   HIGH +     D +AR+ R+ G +V F  G D++G    + 
Sbjct: 35  ERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERK 94

Query: 62  AQNAGVTTKVFVDQNSR-NFRDM 83
            +       +  D  SR  F ++
Sbjct: 95  VEK---YYGIRKDDISREEFIEL 114


>gnl|CDD|184893 PRK14900, valS, valyl-tRNA synthetase; Provisional.
          Length = 1052

 Score = 73.9 bits (181), Expect = 1e-13
 Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 25/252 (9%)

Query: 239 LTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILH 298
            +T G+ +  D  +  F+P  +   G DI+ F    W A ++   L    +V      LH
Sbjct: 474 FSTMGWPEQTDTLRT-FYPTSVMETGHDIIFF----WVARMMMMGLHFMGEVPFRTVYLH 528

Query: 299 ------KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKD---GLKKR 349
                 KG+K+SK+ GNVIDP+ + E+ G DALR+ L    A G+D    K+   G +  
Sbjct: 529 PMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRA- 587

Query: 350 VNADLANGIGNLVSRSVSMILKDY--DGMIPTPGAFTESDESILSVCSRVLQEIRENMQN 407
                AN + N  SR   M L  Y   G  P   A T +D  IL+   R + E  E ++ 
Sbjct: 588 ----FANKLWN-ASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEA 642

Query: 408 QLIHRALAQVISLV-SEV-DRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAF 465
              + A   V + V  E+ D Y +  K   L   +P+   +V  V V  ++    LL  F
Sbjct: 643 FRFNDAANAVYAFVWHELCDWYIELAKE-ALASEDPEARRSVQAVLVHCLQTSYRLLHPF 701

Query: 466 VPKLANKIFDIL 477
           +P +  +++ +L
Sbjct: 702 MPFITEELWHVL 713



 Score = 39.2 bits (91), Expect = 0.003
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 11/58 (18%)

Query: 21  HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSR 78
           H+GHA    + DVL R+ R+ G + L+  GTD           +AG+ T++ V++  +
Sbjct: 64  HLGHALTATLQDVLIRWKRMSGFNTLWLPGTD-----------HAGIATQMIVEKELK 110


>gnl|CDD|184337 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
          Length = 961

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 34/115 (29%)

Query: 227 IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKD--------------ILRFHA 272
           I+ VW D+ + +      L++    K   WPADL++ G D                R  A
Sbjct: 559 ILDVWFDSGSTH---AFVLEDRPDLK---WPADLYLEGSDQHRGWFNSSLLESCGTRGRA 612

Query: 273 IYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALR 326
            Y             K V +HGF L  KGEK+SKSLGN + P +VI++ G D LR
Sbjct: 613 PY-------------KAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILR 654



 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 15  YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG----QKIAKAAQNAGV 67
           Y N   HIGHA   I+ DV+ R  ++ G D  +  G D HG     KI +  +  G 
Sbjct: 64  YANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGK 120


>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
           mitochondrial family.  The leucyl-tRNA synthetases
           belong to two families so broadly different that they
           are represented by separate models. This model includes
           both eubacterial and mitochondrial leucyl-tRNA
           synthetases. It generates higher scores for some
           valyl-tRNA synthetases than for any archaeal or
           eukaryotic cytosolic leucyl-tRNA synthetase. Note that
           the enzyme from Aquifex aeolicus is split into alpha and
           beta chains; neither chain is long enough to score above
           the trusted cutoff, but the alpha chain scores well
           above the noise cutoff. The beta chain must be found by
           a model and search designed for partial length matches.
          Length = 842

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 2   KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
             + K YI     YP+   H+GH     I DVL+R++R+ G +VL   G D  G     A
Sbjct: 26  SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENA 85

Query: 62  AQNAGVTTKVFVDQNSRNFRDMADVL--DISYDDFIRTTEKRHHDTCRILWKKISDKGDI 119
           A   G+    +  +N  N +     L     +D  I T +  ++   + ++ ++ +KG  
Sbjct: 86  AIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLA 145

Query: 120 YKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLL 177
           Y       +   D     +++V   +DG+ +     PV+  E + +F +++AY ++LL
Sbjct: 146 YVKEADVNWCPNDGTVLANEQVD--SDGRSWRGGT-PVEKKELKQWFLKITAYAEELL 200



 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 51/149 (34%)

Query: 228 MYVWIDALTNYLTTTGYLD--NP----DGSKAKFW-PADLHVIGKDILRFHAIY---WPA 277
           M  +  +   YL    YLD  N     D  KA++W P DL++ G +    H +Y   W  
Sbjct: 487 MDTFAGSSWYYL---RYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHK 543

Query: 278 FLLSANL-----PLPKKVFSHGFIL--------------------------------HKG 300
           FL          P  KK+ + G +L                                   
Sbjct: 544 FLYDIGYVSTKEPF-KKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGY 602

Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFL 329
           EK+SKS GN IDP E++++ G DALR ++
Sbjct: 603 EKMSKSKGNGIDPQEIVKKHGADALRLYI 631


>gnl|CDD|180231 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
          Length = 912

 Score = 64.0 bits (157), Expect = 1e-10
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 42/136 (30%)

Query: 214 FDWGIK--IPDDP-QY-----IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGK 265
           F+   K  +PD+  +Y     I+ VW D+ +   +    L+         +PADL++ G 
Sbjct: 500 FELDAKELLPDEADEYEKETDILDVWFDSGS---SHAAVLEQRPELG---YPADLYLEGS 553

Query: 266 D--------------ILRFHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNV 310
           D                R  A Y             K+V +HGF +  KG K+SKSLGNV
Sbjct: 554 DQHRGWFQSSLLTSVATRGKAPY-------------KQVLTHGFTVDGKGRKMSKSLGNV 600

Query: 311 IDPIEVIEEVGVDALR 326
           IDP +VI++ G D LR
Sbjct: 601 IDPQDVIKKYGADILR 616



 Score = 35.5 bits (83), Expect = 0.030
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 15  YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG----QKIAK 60
           Y N   HIGHA   I+ D++ +   + G D  +  G D HG     K+ K
Sbjct: 59  YANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEK 108


>gnl|CDD|166584 PLN02943, PLN02943, aminoacyl-tRNA ligase.
          Length = 958

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 52/209 (24%)

Query: 165 YFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIP--- 221
           +F  +    +K L   E+    I+P ER  ++ +   S +KD  +SR+ + WG +IP   
Sbjct: 410 WFVTMEPLAEKALKAVENGELTIIP-ERFEKIYNHWLSNIKDWCISRQLW-WGHRIPVWY 467

Query: 222 ----------------------------------DDPQYIMYVWIDALTNYLTTTGYLDN 247
                                              DP  ++  W  +     +T G+ D 
Sbjct: 468 IVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPD-VLDTWFSSALWPFSTLGWPDV 526

Query: 248 PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLL------SANLPLPKKVFSHGFILH-KG 300
                 KF+P  +   G DIL F    W A ++      +  +P    V+ HG I   +G
Sbjct: 527 SAEDFKKFYPTTVLETGHDILFF----WVARMVMMGIEFTGTVPF-SYVYLHGLIRDSQG 581

Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFL 329
            K+SK+LGNVIDP++ I+E G DALR+ L
Sbjct: 582 RKMSKTLGNVIDPLDTIKEFGTDALRFTL 610



 Score = 36.8 bits (85), Expect = 0.012
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 11/55 (20%)

Query: 21  HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQ 75
           H+GHA  + + D++ R++R+ G   L+  GTD           +AG+ T++ V++
Sbjct: 104 HMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTD-----------HAGIATQLVVEK 147


>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
           Provisional.
          Length = 995

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 12/79 (15%)

Query: 254 KFWPADLHVIGKDILRFHAIYWPA------FLLSANLPLPKKVFSHGFILHK-GEKISKS 306
           +F+P  L   G DIL F    W A        L+  LP  K VF H  +    GEK+SKS
Sbjct: 535 RFFPTSLLETGSDILFF----WVARMVMMSLHLTDKLPF-KTVFLHAMVRDSQGEKMSKS 589

Query: 307 LGNVIDPIEVIEEVGVDAL 325
            GNVIDP+EVIE + +  L
Sbjct: 590 KGNVIDPLEVIEGISLQDL 608



 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 11/53 (20%)

Query: 21  HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFV 73
           HIGHA    I D L R+HR+ G + L+  GTD H          AG+ T+V V
Sbjct: 76  HIGHALTGAIQDSLIRYHRMKGDETLWVPGTD-H----------AGIATQVVV 117


>gnl|CDD|178436 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
          Length = 974

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 14/96 (14%)

Query: 228 MYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLS---ANL 284
           M VW D+ +++    G L + +G     +PADL++ G D    H  ++ + LL+      
Sbjct: 541 MDVWFDSGSSW---AGVLGSREGLS---YPADLYLEGSDQ---HRGWFQSSLLTSVATKG 591

Query: 285 PLP-KKVFSHGFIL-HKGEKISKSLGNVIDPIEVIE 318
             P K V +HGF+L  KG K+SKSLGNV+DP  VIE
Sbjct: 592 KAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIE 627



 Score = 37.8 bits (88), Expect = 0.007
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 15 YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKI 58
          Y N   HIGHA   I+ D + R+  L G  V +  G D HG  I
Sbjct: 42 YANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPI 85


>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
          Length = 1066

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 17/127 (13%)

Query: 239 LTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFL------LSANLPLPKKVFS 292
           L+  G+ D+ D  KA F+P  +   G DIL F    W A +      L  ++P  +KV+ 
Sbjct: 591 LSVLGWPDDTDDLKA-FYPTSVLETGHDILFF----WVARMVMMGMQLGGDVPF-RKVYL 644

Query: 293 HGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVN 351
           H  I    G K+SKSLGNVIDP+EVI  + ++ L   L       K+    K+G KK   
Sbjct: 645 HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKK--- 701

Query: 352 ADLANGI 358
            D  NGI
Sbjct: 702 -DFPNGI 707



 Score = 36.8 bits (85), Expect = 0.015
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 11/55 (20%)

Query: 21  HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQ 75
           HIGHA    I D + R+ R+ G + L+  G D           +AG+ T+V V++
Sbjct: 144 HIGHALTAAIEDTIIRWKRMSGYNALWVPGVD-----------HAGIATQVVVEK 187


>gnl|CDD|161856 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
          cytosolic family.  The leucyl-tRNA synthetases belong
          to two families so broadly different that they are
          represented by separate models. This model includes
          both archaeal and cytosolic eukaryotic leucyl-tRNA
          synthetases; the eubacterial and mitochondrial forms
          differ so substantially that some other tRNA ligases
          score higher by this model than does any eubacterial
          LeuS.
          Length = 938

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1  MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG 50
            +REK +++ A  Y N   H GH     I +V ARF R+ G +VLF  G
Sbjct: 21 PDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLG 70



 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 29/229 (12%)

Query: 255 FWPADLHVIGKDILRFHAIYWPAFLLSANLP---LPKKVFSHGFILHKGEKISKSLGNVI 311
           ++P D  + GKD++  H  ++  F   A  P    P+ +  +G+++ +G+K+SKS GNV+
Sbjct: 571 WYPLDWRISGKDLIPNHLTFY-IFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVL 629

Query: 312 DPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNL--VSRSVSMI 369
              + +E+ G D  R +    IA   +   D D  +  V       +  L   +  ++  
Sbjct: 630 TLEQAVEKFGADVARLY----IADAAETVQDADWKESEVEG-TILRLERLYEFAEEITKE 684

Query: 370 LKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRAL-AQVISLVSEVDRYF 428
                G        +  D  + S  +  ++E  E M+N    +A+   +  L ++VD Y 
Sbjct: 685 SNLETGEE-----TSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWY- 738

Query: 429 DAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
                   ++        VL   +E       LL  F P  A ++++ +
Sbjct: 739 --------RRRGGVNHKDVLARYLETW---IKLLAPFAPHFAEEMWEEV 776


>gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase.
          Length = 1084

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 255 FW-PADLHVIGKDILRFH---AIYWPAFLLSANLPLPKKVFSHGFILHKGEKISKSLGNV 310
           +W P DL V GKD+++ H   AIY    +  A    P+    +G ++   EK+SKS GN 
Sbjct: 668 YWYPFDLRVSGKDLIQNHLTFAIYNHTAIW-AEEHWPRGFRCNGHLMLNSEKMSKSTGNF 726

Query: 311 IDPIEVIEEVGVDALRYFL 329
           +   + IEE   DA R+ L
Sbjct: 727 LTLRQAIEEFSADATRFAL 745



 Score = 37.0 bits (86), Expect = 0.012
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 2  KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLF 47
          K  EK + +    Y N   H+GHA+ +   +  A +HRL G +VL 
Sbjct: 42 KPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87


>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
          Length = 963

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 21/183 (11%)

Query: 6   KLYISTAIAYPN-AQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQN 64
           K Y+     YP+ A  H+GH       D+LAR+ R+ G +VL   G D  G    + A  
Sbjct: 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIE 170

Query: 65  AGVTTKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKG 122
            G   K+   +N   FR     L  SYD    I TTE  ++   + ++ ++  +G  Y+ 
Sbjct: 171 TGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQA 230

Query: 123 CYS-GWYSLRDEAYYNDDEVYKGADGQYYNAQHNPV------QWMEEEGYFFRLSAYQDK 175
                W         N++ V    DG      H PV      QWM       +++AY D+
Sbjct: 231 EVPVNWCPALGTVLANEEVV----DGLSERGGH-PVIRKPMRQWM------LKITAYADR 279

Query: 176 LLS 178
           LL 
Sbjct: 280 LLE 282



 Score = 37.9 bits (88), Expect = 0.007
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 302 KISKSLGNVIDPIEVIEEVGVDALRYF 328
           K+SKS GNV++P +V+ E G D+LR +
Sbjct: 723 KMSKSRGNVVNPDDVVSEYGADSLRLY 749


>gnl|CDD|183418 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
          Length = 897

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 22/184 (11%)

Query: 294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNAD 353
           GF+L +G+K+SKS GNVI   + IEE G D +R +    +    +   D D         
Sbjct: 569 GFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLY----LTSSAELLQDAD-----WREK 619

Query: 354 LANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRA 413
               +   + R   +  +  +  I         D+ +LS  +R+++E  E M++     A
Sbjct: 620 EVESVRRQLERFYELAKELIE--IGGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDA 677

Query: 414 LAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKI 473
              V     E+         W L++           V  EV+     LL  F P LA ++
Sbjct: 678 ---VQEAFYELLNDLR----WYLRRVG----EANNKVLREVLEIWIRLLAPFTPHLAEEL 726

Query: 474 FDIL 477
           +  L
Sbjct: 727 WHKL 730



 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 20 PHIGHAYEMIIADVLARFHRLDGLDVLFT-----TGT 51
           H+GH     I DV+AR+ R+ G +VLF      TGT
Sbjct: 1  LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGT 37


>gnl|CDD|178996 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
          Length = 805

 Score = 47.4 bits (114), Expect = 9e-06
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 41/189 (21%)

Query: 288 KKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKD--- 344
           KK+ + G +     K+SKS GNV+DP ++IE+ G D  R F +        G  +KD   
Sbjct: 561 KKLLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMF------AGPPEKDLEW 609

Query: 345 ---GLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEI 401
              G++         G    + R   +++           A    D+ +     + ++++
Sbjct: 610 SDSGVE---------GAYRFLQRVWRLVVDAKGEAGALDVAALSEDKELRRKLHKTIKKV 660

Query: 402 RENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAIL 461
            E+++    + A+A ++ LV+ + +  D Q          D+A     V  E +  L  L
Sbjct: 661 TEDIERLRFNTAIAALMELVNALYKAEDEQ----------DKA-----VLREALEILVRL 705

Query: 462 LQAFVPKLA 470
           L  F P LA
Sbjct: 706 LAPFAPHLA 714



 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 16/86 (18%)

Query: 15  YPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA----AQNAGVTTK 70
           YP+   H+GH     I DV+AR+ R+ G +VL   G D        A    A+NA + T 
Sbjct: 42  YPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD--------AFGLPAENAAIKTG 93

Query: 71  V----FVDQNSRNFRDMADVLDISYD 92
                +  +N  N +     L  SYD
Sbjct: 94  THPAEWTYENIANMKKQLKSLGFSYD 119


>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
          Length = 463

 Score = 44.7 bits (107), Expect = 6e-05
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 294 GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329
           GF+   GEK+SKSLGN     +++++   + LR+FL
Sbjct: 258 GFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL 293



 Score = 40.9 bits (97), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 20  PHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQN 76
            HIGHA   ++ DVL R+ R  G  V +    T  D+   KI K A   G + K   ++ 
Sbjct: 37  AHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDD---KIIKRANEEGESIKELTERY 93

Query: 77  SRNFRDMADVLDI 89
              F +  D L++
Sbjct: 94  IAAFHEDMDALNV 106


>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
          Length = 1159

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 300 GEKISKSLGNVIDPIEVIEEVGVDALRYFLV 330
           G+K+SKSL N  DP EVI++ G DALR +L+
Sbjct: 612 GKKMSKSLKNYPDPNEVIDKYGADALRLYLI 642


>gnl|CDD|149360 pfam08264, Anticodon_1, Anticodon-binding domain.  This domain is
           found valyl and leucyl tRNA synthetases. It binds to the
           anticodon of the tRNA.
          Length = 148

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 387 DESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEV--DRYFDAQKP--WELKKTNPD 442
           D  ILS  +++++E+ E  +    + A + +         D Y +  K   +        
Sbjct: 1   DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESK 60

Query: 443 RASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
           R +T LY   EV+  L  LL  F+P +  +++  L
Sbjct: 61  RRATTLY---EVLETLLRLLAPFMPFITEELWQKL 92


>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
          Length = 1205

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 254 KFWPADLHVIGKDILR--FHAIYWPAFLLSANLPLPKKVFSHGFIL-HKGEKISKSLGNV 310
           K +PAD    G D  R  F+ +   + LL    P  K +  +G +L   G+K+SK L N 
Sbjct: 670 KIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPF-KNLICNGLVLASDGKKMSKRLKNY 728

Query: 311 IDPIEVIEEVGVDALRYFLVREIA 334
            DP+ ++++ G D+LR +L+  +A
Sbjct: 729 PDPLYILDKYGADSLRLYLINSVA 752



 Score = 28.4 bits (63), Expect = 4.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 20  PHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKI 58
           PH GH    II D + R+    G  V    G D HG  I
Sbjct: 117 PHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPI 155


>gnl|CDD|161877 TIGR00435, cysS, cysteinyl-tRNA synthetase.  This model finds the
           cysteinyl-tRNA synthetase from most but not from all
           species. The enzyme from one archaeal species,
           Archaeoglobus fulgidus, is found but the equivalent
           enzymes from some other Archaea, including Methanococcus
           jannaschii, are not found, although biochemical evidence
           suggests that tRNA(Cys) in these species are charged
           directly with Cys rather than through a misacylation and
           correction pathway as for tRNA(Gln).
          Length = 465

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 21  HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80
           HIGHA   I+ DVL R+ R  G  V +     +   KI K A+  G +     ++    +
Sbjct: 36  HIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAY 95

Query: 81  RDMADVLDISYDDF-IRTTEKRHH--DTCRILWKK----ISDKGDIY 120
            +    L++   D   R TE      +    L +K    +SD GD+Y
Sbjct: 96  FEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVY 142



 Score = 37.0 bits (86), Expect = 0.013
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 289 KVFSH-GFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329
           K + H GF++   EK+SKSLGN     +V++    + LRYFL
Sbjct: 251 KYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFL 292


>gnl|CDD|179109 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
          Length = 510

 Score = 36.7 bits (86), Expect = 0.013
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 295 FILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFL 329
           F+  KGEKISKS GNVI   + +E    ++LR F+
Sbjct: 273 FLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFM 307


>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
          Length = 699

 Score = 36.6 bits (84), Expect = 0.017
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 293 HGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVR 331
           +GFI   GEK+SKSLGN     EV+++   + +R+F++R
Sbjct: 499 NGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537



 Score = 31.6 bits (71), Expect = 0.48
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 21  HIGHAYEMIIADVLARFHRLDGLDVLFTTG-TDEHGQKIAKAAQNA 65
           H+GHA  M++ D++AR+ R  G  + +    TD   + IA+AA+N 
Sbjct: 263 HLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENG 308


>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
            This small subfamily includes diaminopropionate
           ammonia-lyase from Salmonella typhimurium and a small
           number of close homologs, about 50 % identical in
           sequence. The enzyme is a pyridoxal phosphate-binding
           homodimer homologous to threonine dehydratase (threonine
           deaminase).
          Length = 376

 Score = 32.6 bits (74), Expect = 0.23
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 44  DVLFTTGTD-EHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA--------DVLDISYDDF 94
              F T TD  HG+ +A AAQ  G    V++ + S   R            + D++YDD 
Sbjct: 94  QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDT 153

Query: 95  IRTTEKRHHDTCRILWKKISDKG--DIYKGCYSGWYSLRDEAY 135
           +R   +       ++ +  + +G   I      G+ +L DEA 
Sbjct: 154 VRLAMQMAQQHGWVVVQDTAWEGYEKIPTWIMQGYATLADEAV 196


>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
          Length = 507

 Score = 32.4 bits (75), Expect = 0.30
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 17/50 (34%)

Query: 299 KGEKISKSLGNVIDPIEVIEE-----------------VGVDALRYFLVR 331
           +G K+S   GNV+   ++++E                 VG+DA+RYF + 
Sbjct: 319 EGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLS 368


>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
          Length = 557

 Score = 32.2 bits (73), Expect = 0.33
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 293 HGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLV 330
           +GF+    EK+SKSLGN     +VI+     ALR FL+
Sbjct: 314 NGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLL 351



 Score = 29.9 bits (67), Expect = 1.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 7   LYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTG-TDEHGQKIAKAAQ 63
           +Y+    AY  +  HIGHA   +  DVL R+ +  G +V +    TD   + IA+A +
Sbjct: 83  MYVCGVTAYDLS--HIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE 138


>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
          Length = 2052

 Score = 32.1 bits (72), Expect = 0.40
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 31  ADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNS 77
           A++LAR ++L   D +     D   Q +A AA+N G   +VF+D N+
Sbjct: 396 AELLARLNQLAAADKVLARDPDTFEQFVANAAEN-GPVQQVFIDANT 441


>gnl|CDD|161886 TIGR00456, argS, arginyl-tRNA synthetase.  This model recognizes
           arginyl-tRNA synthetase in every completed genome to
           date. An interesting feature of the alignment of all
           arginyl-tRNA synthetases is a fairly deep split between
           two families. One family includes archaeal, eukaryotic
           and organellar, spirochete, E. coli, and Synechocystis
           sp. The second, sharing a deletion of about 25 residues
           in the central region relative to the first, includes
           Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
           Mycobacteria, and the Gram-negative bacterium
           Helicobacter pylori.
          Length = 566

 Score = 31.2 bits (71), Expect = 0.67
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 2   KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVL 46
            + +K+ I  + A P    HIGH    II D LAR     G DV+
Sbjct: 109 LKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153


>gnl|CDD|152856 pfam12422, Condensin2nSMC, Condensin II non structural maintenance
           of chromosomes subunit.  This domain family is found in
           eukaryotes, and is approximately 150 amino acids in
           length. This family is part of a non-SMC subunit of
           condensin II which is involved in maintenance of the
           structural integrity of chromosomes. Condensin II is
           made up of SMC (structural maintenance of chromosomes)
           and non-SMC subunits. The non-SMC subunits bind to the
           catalytic ends of the SMC subunit dimer. The condensin
           holocomplex is able to introduce superhelical tension
           into DNA in an ATP hydrolysis- dependent manner,
           resulting in the formation of positive supercoils in the
           presence of topoisomerase I and of positive knots in the
           presence of topoisomerase II.
          Length = 152

 Score = 30.3 bits (69), Expect = 1.3
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 22/130 (16%)

Query: 382 AFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNP 441
           +F  S  SIL       +EI   ++NQ+   + + V+    E+   F A   W  K  + 
Sbjct: 21  SFLFSLSSILI------KEIHTLIKNQIPKLSKS-VLEAYGEI--LFRA---W--KNASG 66

Query: 442 DRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQRLKPGFMLHK 501
                +  V ++ + + AI  +   P LA K  ++L      +  + +D+      +L +
Sbjct: 67  ALKEEIEEVIIQDLMEGAIHAET--PLLAKKFREVLSSFHNKKARKGVDK------LLLR 118

Query: 502 TFDPIFPRFL 511
            ++PI  R L
Sbjct: 119 LYEPILWRAL 128


>gnl|CDD|184153 PRK13572, PRK13572, anthranilate synthase component I; Provisional.
          Length = 435

 Score = 30.1 bits (68), Expect = 1.4
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 160 MEEEGYFFRL-SAYQDKL---LSYYESHPEFILPIERR----NEVISFVKSGLKDLSLSR 211
           + +EGY F L SA + +     +Y  ++PEF++ I  +     E IS   +  K L  + 
Sbjct: 18  LRDEGYPFILESAEKGQRKARYTYISANPEFMVRIGNKTKVDGETISKESNPFKALKENF 77

Query: 212 KTFDWGIKIPDDPQYIMYVWIDALTNYL 239
           K    G +      ++ Y+  DA+ NY+
Sbjct: 78  KITQSGDRFTGG--FVGYIAYDAVHNYI 103


>gnl|CDD|179068 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
            Provisional.
          Length = 1156

 Score = 29.7 bits (68), Expect = 1.9
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 298  HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREI 333
              G+K++   G+ IDP +++  +GV+A++ +LV E+
Sbjct: 979  EAGDKLTD--GS-IDPHDILRVLGVEAVQNYLVNEV 1011


>gnl|CDD|182559 PRK10573, PRK10573, type IV pilin biogenesis protein; Provisional.
          Length = 399

 Score = 28.7 bits (65), Expect = 3.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 453 EVIRQLAILLQAFVP 467
           E IRQLA LLQA +P
Sbjct: 63  EFIRQLATLLQAGLP 77


>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
           YlqF.  Members of this protein family are GTP-binding
           proteins involved in ribosome biogenesis, including the
           essential YlqF protein of Bacillus subtilis, which is an
           essential protein. They are related to Era, EngA, and
           other GTPases of ribosome biogenesis, but are circularly
           permuted. This family is not universal, and is not
           present in Escherichia coli, and so is not as well
           studied as some other GTPases. This model is built for
           bacterial members.
          Length = 276

 Score = 28.6 bits (65), Expect = 3.9
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 23/87 (26%)

Query: 55  GQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKIS 114
           G+K+AK     GVT         + +  ++D L++              DT  ILW K  
Sbjct: 140 GKKVAKVGNRPGVTK-------GQQWIKLSDGLELL-------------DTPGILWPKFE 179

Query: 115 DKGDIYKGCYSGWYSLRDEAYYNDDEV 141
           D+    K   +G  +++DEA  + ++V
Sbjct: 180 DQEVGLKLAATG--AIKDEA-LDLEDV 203


>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
           4-aminotransferase.  This family of enzymes are
           aminotransferases of the pfam01041 family involved in
           the biosynthesis of pseudaminic acid. They convert
           UDP-4-keto-6-deoxy-N-acetylglucosamine into
           UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
           acid has a role in surface polysaccharide in Pseudomonas
           as well as in the modification of flagellin in
           Campylobacter and Helicobacter species.
          Length = 380

 Score = 28.4 bits (64), Expect = 4.7
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 155 NPVQW---MEEEGYFFRLSAYQDKL-LSYYESHPEFILPIERRNEVISFVKSGLKDL 207
           +   W    +E G+ +R++  Q  L LS  +    F+    +R E+ +     LKDL
Sbjct: 225 DEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFV---AKRREIAARYDRLLKDL 278


>gnl|CDD|177900 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
          Length = 590

 Score = 28.1 bits (63), Expect = 4.8
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 376 MIPTPGAFTESDESILSVCSRVLQEIRENM 405
           M P    F ESDES+ S    VL EIR N+
Sbjct: 423 MTPPDSIFNESDESLRS----VLSEIRLNL 448


>gnl|CDD|147899 pfam05990, DUF900, Alpha/beta hydrolase of unknown function
           (DUF900).  This family consists of several hypothetical
           proteins of unknown function mostly found in Rhizobium
           species. Members of this family have an alpha/beta
           hydrolase fold.
          Length = 230

 Score = 28.1 bits (63), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 449 YVTVEVIRQLAILLQAFVPKLANKIFD-ILFVADENR 484
           ++ +E +RQLAI  +A  P +  KI + IL   D + 
Sbjct: 106 WLVMEALRQLAI--EADEPDVVAKIGNVILAAPDIDV 140


>gnl|CDD|132323 TIGR03280, methan_mark_11, putative methanogenesis marker protein
           11.  Members of this protein family, to date, are found
           in a completed prokaryotic genome if and only if the
           species is one of the archaeal methanogens. The exact
           function is unknown, but likely is linked to
           methanogenesis or a process closely connected to it.
          Length = 292

 Score = 28.2 bits (63), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 185 EFILPIERRNEVISFVKSGLKDLSLSRKT 213
           EF +  E + ++    K  LK+ +LS +T
Sbjct: 194 EFAVYPEYKEKLAREFKKLLKEYTLSDET 222


>gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii
           family.  The seryl-tRNA synthetases from a few of the
           Archaea, represented by this model, are very different
           from the set of mutually more closely related seryl-tRNA
           synthetases from Eubacteria, Eukaryotes, and other
           Archaea. Although distantly homologous, the present set
           differs enough not to be recognized by the pfam model
           tRNA-synt_2b that recognizes the remainder of seryl-tRNA
           synthetases among oither class II amino-acyl tRNA
           synthetases.
          Length = 520

 Score = 28.0 bits (62), Expect = 6.5
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 26/115 (22%)

Query: 142 YKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLS----------YYESHPEFILPIE 191
           Y+  +G+  +A+  P+++ +  G+ +R  A   K L            + + PE     E
Sbjct: 321 YQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETE--E 378

Query: 192 RRNEVISFVKSGLKDLSLS--------------RKTFDWGIKIPDDPQYIMYVWI 232
            R++ +   +    +L L               RK  D GI+ PD P+Y M + +
Sbjct: 379 IRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSL 433


>gnl|CDD|178741 PLN03200, PLN03200, cellulose synthase-interactive protein;
           Provisional.
          Length = 2102

 Score = 27.8 bits (62), Expect = 6.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)

Query: 242 TGYLDNPDGSKAKFWPADLHVIGKDIL 268
           TG L N  GS   FW A L   G DIL
Sbjct: 168 TGALRNLCGSTDGFWSATLEAGGVDIL 194


>gnl|CDD|150150 pfam09381, Porin_OmpG, Outer membrane protein G (OmpG).  Porins are
           channel proteins in the outer membrane of gram negative
           bacteria which mediate the uptake of molecules required
           for growth and survival. Escherichia coli OmpG forms a
           14 stranded beta-barrel and in contrast to most porins,
           appears to function as a monomer. The central pore of
           OmpG is wider than other E. coli porins and it is
           speculated that it may form a non-specific channel for
           the transport of larger oligosaccharides.
          Length = 280

 Score = 27.7 bits (61), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 215 DWGIKIPDDPQYIMYVWIDALTNYLTTTGYLD 246
           DW +K+ DD ++  ++ +    N L TTGY D
Sbjct: 117 DWDVKLTDDLRFNGWLSMYKFANDLNTTGYAD 148


>gnl|CDD|180405 PRK06110, PRK06110, hypothetical protein; Provisional.
          Length = 322

 Score = 27.7 bits (62), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 54  HGQKIAKAAQNAGVTTKVFVDQ-NSR 78
           HGQ +A AA+  G+   + V   NS 
Sbjct: 81  HGQSVAFAARRHGLAATIVVPHGNSV 106


>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
          Length = 332

 Score = 27.4 bits (61), Expect = 8.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 50  GTDEHGQKIAKAAQNAGVTTKVFVDQNS 77
           G D+ G+++ K A  AGV    + D+++
Sbjct: 79  GKDKFGEEMKKCATAAGVNVHYYEDEST 106


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0829    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,705,655
Number of extensions: 583510
Number of successful extensions: 1293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1241
Number of HSP's successfully gapped: 91
Length of query: 511
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,876,889
Effective search space: 1601155157
Effective search space used: 1601155157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)