BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(511 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAK 60
MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAK
Sbjct: 1 MKEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAK 60
Query: 61 AAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120
AAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY
Sbjct: 61 AAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120
Query: 121 KGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYY 180
KGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYY
Sbjct: 121 KGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYY 180
Query: 181 ESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT 240
ESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT
Sbjct: 181 ESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLT 240
Query: 241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG 300
TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG
Sbjct: 241 TTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKKVFSHGFILHKG 300
Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN
Sbjct: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
Query: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL
Sbjct: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
Query: 421 VSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA 480
VSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA
Sbjct: 421 VSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVA 480
Query: 481 DENRCFQSLDQRLKPGFMLHKTFDPIFPRFL 511
DENRCFQSLDQRLKPGFMLHKTFDPIFPRFL
Sbjct: 481 DENRCFQSLDQRLKPGFMLHKTFDPIFPRFL 511
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
EK+SKS NVIDP++VI+ G D R F++ + +D + G+ I
Sbjct: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDS--TYQFIQQIWR 686
Query: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
L+ Y+ + T+ D S++S ++ L+ I EN QN ++A+A + L
Sbjct: 687 LI----------YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736
Query: 421 VSEVDR-YFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
V+ + + + K KK+N DR ST+ Y ++ +L I++ +P LA + + +L
Sbjct: 737 VNVISKPLMEIAK----KKSNADRISTIRY----ILEKLIIMMSPMIPHLAEECWQLL 786
Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 8/188 (4%)
Query: 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
K ++K ++ YP+ H+GH +I DV+ARF R G VL G D G A
Sbjct: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENA 90
Query: 62 AQNAGVTTKVFVDQNSRNFRDMADVLDISYD---DFIRTTEKRHHDTCRILWKKISDKGD 118
A+ V K++ QN + R + +S D DF +H + +
Sbjct: 91 AREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVI 150
Query: 119 IYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLS 178
+ K W + N+ + +G+ + + PV+ +FF++S +LL
Sbjct: 151 VRKTAQVNWDPVEQTVLANEQVI----NGRGWRSDA-PVEQRSLPQWFFKISDLSQELLD 205
Query: 179 YYESHPEF 186
E+ E+
Sbjct: 206 SIETLSEW 213
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 56.6 bits (135), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 47/269 (17%)
Query: 227 IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANL 284
I+ VW D+ + G +P + WPAD+++ G D R F + +
Sbjct: 562 ILDVWFDSACTHTILLG--KDPKLA----WPADVYLEGSDQHRGWFQHSLLESCATRGST 615
Query: 285 PLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDK 343
P + +HGF + GEK+SKS GNV+ P E+I E G D LRY+ V ++D
Sbjct: 616 PF-TSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV------NSDYHDD 668
Query: 344 DGLKKRV---NADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQE 400
L K + N D + N + + M+ D G P+ ++ +L + + Q
Sbjct: 669 QRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHD-TGNEPSLADMPALEQLMLHRLTELDQV 727
Query: 401 IRE--------NMQNQLIHRALAQVISLVSEVDRYFDAQK-------PWELKKTNPDRAS 445
+RE + QL + + A++ S YFD +K P LK R S
Sbjct: 728 VREAYDAFNFKEVVRQLTNFSNAELSSF------YFDIRKDSLYCDSPSSLK-----RLS 776
Query: 446 TVLYVTVEVIRQLAILLQAFVPKLANKIF 474
++ + + + R L I + +P A + +
Sbjct: 777 SIAVIRI-LCRHLIIWIAPILPFTAEEAW 804
Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 22/158 (13%)
Query: 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQ 63
R+ + Y N HIGHA I+ DV+ R ++ + F G D HG I +
Sbjct: 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE 112
Query: 64 NAGV--------------------TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHH 103
N + + +V S+ F+ + V D T E
Sbjct: 113 NEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ 172
Query: 104 DTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEV 141
+L KI++ IY+G +S+ ++ + E+
Sbjct: 173 IASELL--KIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 16/96 (16%)
Query: 255 FWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKK-----------VFSHGFILHK-GEK 302
++P + V G DIL F W A ++ L K V+ H + K G+K
Sbjct: 537 YYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQK 592
Query: 303 ISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKD 338
+SKS GNV+DPI+VI++ G DALR++ G+D
Sbjct: 593 MSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRD 628
Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 12 AIAYPNAQP--HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTT 69
A+ PN H+GHA+ I D++ RF R+ G +VL+ GTD +AG+ T
Sbjct: 42 AMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTD-----------HAGIAT 90
Query: 70 KVFVDQNSRNFRDMADVL-DISYDDFI 95
++ V+ SR F + DI D FI
Sbjct: 91 QITVE--SRLFAQSSLTREDIGRDAFI 115
>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 412
Score = 26.9 bits (58), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 2 KEREKLYISTAIAYPNAQPHIGHA---YEMIIADVLARFHRLDGLDVLFTTG 50
KE E+ + TA N++ + +I D+L + HR +G+D TTG
Sbjct: 120 KENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLRKLHRANGIDTNITTG 171
>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHR 39
++Y+ Y A HIG+A MI+ DVL R R
Sbjct: 27 RMYVCGPTVYDFA--HIGNARPMIVFDVLYRLLR 58
Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 293 HGFILHKGEKISKSLGNVIDPIEVIE 318
+GF+ +G K+SKS GN I E++E
Sbjct: 268 NGFLNLEGRKMSKSNGNFITINELLE 293
>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIK 219
+EE Y F L K YY +H I+ + + + D+++++ T +
Sbjct: 25 LEEIFYLFSLKWPSPKGELYYVNHFTLIVAV--------LLSAQSTDVNVNKATKHL-FE 75
Query: 220 IPDDPQYIMYVWIDALTNYLTTTG 243
I D PQ ++ + L NY+ T G
Sbjct: 76 IADTPQKMLAIGEKKLQNYIRTIG 99
>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 463
Score = 23.9 bits (50), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 425 DRYFDAQKPWELK--KTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE 482
DRY+ AQ L+ K ++ V+ + +I+Q A + + KL KI + + A E
Sbjct: 19 DRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE 78
Query: 483 NRCFQSLD 490
LD
Sbjct: 79 EVINGKLD 86
>537021.9.peg.409_1
Length = 242
Score = 23.5 bits (49), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 47 FTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRT 97
F +E +K+ + A+ + + + + +D N + ++L+IS D+ I T
Sbjct: 157 FAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEILEISNDEDIET 206
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,126
Number of Sequences: 1233
Number of extensions: 15018
Number of successful extensions: 50
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 15
length of query: 511
length of database: 328,796
effective HSP length: 78
effective length of query: 433
effective length of database: 232,622
effective search space: 100725326
effective search space used: 100725326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)