HHsearch alignment for GI: 255764462 and conserved domain: TIGR00460
>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The top-scoring characterised proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. ; GO: 0004479 methionyl-tRNA formyltransferase activity, 0006412 translation.
Probab=100.00 E-value=0 Score=551.23 Aligned_cols=302 Identities=38% Similarity=0.621 Sum_probs=283.5
Q ss_pred CEEEEECCCHHH---HHHHHHHHHCC-----CCEEEEEEC-------CCCCCCCCCCC--CCCCHHHHHHHH----CCCC
Q ss_conf 069997798688---99999999679-----849999827-------57822757875--678988999998----5997
Q gi|255764462|r 3 LRVVFMGTSEFA---VATLQALVSSS-----HSIVSVYTQ-------PPRPAGRRGLK--SVLSAVHKKAQE----FSLP 61 (310)
Q Consensus 3 mkI~f~G~~~~~---~~~l~~l~~~~-----~~i~~vvt~-------~d~~~~~~~~~--~~~~~v~~~a~~----~~ip 61 (310)
T Consensus 1 ~~i~F~Gtp~f~nfs~~~l~~l~~~~~sCGi~~v~~VvT~qfaretlpd~~~g-R~kke~l~~~~~k~~A~~sP~~~gip 79 (385)
T TIGR00460 1 LRILFFGTPTFSNFSLPVLEELREDNDSCGIFEVVGVVTQQFARETLPDKPAG-RGKKEILTPPPVKVLALKSPLQKGIP 79 (385)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHCCCCCHHH-CCCCEECCCCCHHHHHCCCCCCCCCE
T ss_conf 95899627606665599899997568961278888862121333137630343-37630016773354301477888770
Q ss_pred EEEECCCC-C--CCHHHHHHCCC---------CCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99702434-4--20023421045---------731320242112443001211001010232221033200244443103
Q gi|255764462|r 62 ALVPTKLG-Q--EEYEQFLSFNA---------DVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG 129 (310)
Q Consensus 62 ~~~~~~~~-~--~~~~~l~~~~~---------D~~v~~~~~~ii~~~il~~~~~g~iN~H~s~LP~yRG~~pi~wai~~g 129 (310)
T Consensus 80 v~qp~~~~~~~~~~~~~v~~L~pendGsGaPfD~~vvvsfG~iL~~~~ld~~p~g~iNVHpSlLP~~RG~APIq~~il~G 159 (385)
T TIGR00460 80 VLQPEKQRLLALEELPLVEELKPENDGSGAPFDVIVVVSFGKILPKELLDLFPYGCINVHPSLLPRYRGGAPIQRAILNG 159 (385)
T ss_pred EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHCC
T ss_conf 40650002012343304550687667888852124445130112489986079974765701042336676589998667
Q ss_pred CCCCCCCEEEECCC-CCHHHHHHH-CCCCCCCCC------------C-------HHHHHHCCCCCCHHHHHHHCCH-HHC
Q ss_conf 45454320220123-320345420-145433322------------1-------0110000023301122320000-000
Q gi|255764462|r 130 DNETGIAIMKMDKH-LDTGPVAFM-RKVPISSNI------------N-------TAGLQQELSVLCAHAMVEAMDK-LEQ 187 (310)
Q Consensus 130 ~~~~g~t~~~~~~~-~D~G~Ii~q-~~~~I~~~~------------t-------~~~L~~kl~~~~~~ll~~~l~~-i~~ 187 (310)
T Consensus 160 d~~tGvTIm~~~~~R~D~G~Il~qt~~~~i~~~~skGrvndstadfnseGlPrr~~~L~~~L~~lGa~lL~~tl~~r~~~ 239 (385)
T TIGR00460 160 DKKTGVTIMQMVEKRMDAGDILKQTEEVPIEEEDSKGRVNDSTADFNSEGLPRRSGTLSDKLSELGASLLIETLKERLLE 239 (385)
T ss_pred CCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 50213178996243378640676142434565334775244412326677640258899999872604688898877513
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCC---CCCCCEEEEEECCCC---------EEEEEEEEE
Q ss_conf 24655678830001112221122221024-56888887543127---665424899405851---------466788656
Q gi|255764462|r 188 NNLPLSPQIENGITYAEKISKGETRVNFC-RSAENVHNHIRALS---PFPGAWLEMMIGNKH---------ERIKLLESQ 254 (310)
Q Consensus 188 g~~~~~~Q~~~~~sy~~k~~~~d~~Idw~-~~a~~I~n~iRA~~---P~PgA~~~~~~~~~~---------~~iki~~~~ 254 (310)
T Consensus 240 g~~~p~~q~~~~~TyA~~i~kE~~~i~w~~~sa~~~~n~iral~niiP~p~~~~~~----~~rkdaqnsvl~~i~~~~a~ 315 (385)
T TIGR00460 240 GKNKPEPQDAEEATYAPKIKKEEERIDWNRQSAEELLNKIRALNNIIPWPLAWLTL----EGRKDAQNSVLKRIKIHKAK 315 (385)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH----HHHHHHHHHHHCCEEEEEEE
T ss_conf 34686136767885563413677631267656999999998751447765010001----00122444431242588843
Q ss_pred ECCC-------C-CCCCEEEE---CCEEEEEC-CCEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 5178-------8-88737974---88799807-9869999885486971248899647999988407
Q gi|255764462|r 255 LVEG-------E-GKPGEVIN---PNFTIACS-QGAVRIMRLQRAGGRVLDIGDFLLGCPVIIGCIV 309 (310)
Q Consensus 255 ~~~~-------~-~~pG~I~~---~~l~V~c~-dG~i~I~~lq~~Gkk~m~a~df~ng~~~~~G~~l 309 (310)
T Consensus 316 ~~~~~~~~ltG~~~~pG~i~~~~~~gi~va~~~~~~l~l~~~Q~~Gkk~m~~~df~nG~~~~~~~~~ 382 (385)
T TIGR00460 316 VVDLSTYDLTGKASKPGEIVDIKRKGILVACGKDGILLLEELQPAGKKVMRAEDFYNGYRREWYDVF 382 (385)
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEHHHCCHHHHHEEEHHHHHHHHHHHCCCCC
T ss_conf 4314455435444576217864676138880787555330307001102016665522332204567