RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764462|ref|YP_003064709.2| methionyl-tRNA
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(310 letters)
>gnl|CDD|30572 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation,
ribosomal structure and biogenesis].
Length = 307
Score = 322 bits (828), Expect = 6e-89
Identities = 132/311 (42%), Positives = 190/311 (61%), Gaps = 11/311 (3%)
Query: 2 TLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLP 61
+R+VF GT EFAV +L+AL+ + H IV+V TQP +PAGR G K S V + A E +P
Sbjct: 1 MMRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGR-GKKLTPSPVKRLALELGIP 59
Query: 62 ALVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAA 120
P KL E E+ + + D+ VVVAYG ++P+ IL+ G N H SLLPR+RGAA
Sbjct: 60 VFQPEKLNDPEFLEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAA 119
Query: 121 PIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVE 180
PIQ AI+ GD ETG+ IM+MD+ LD G + R+VPI + L +L+ L A ++E
Sbjct: 120 PIQWAILNGDTETGVTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLE 179
Query: 181 AMDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMM 240
+ +LE L PQ E TYA KI+K + R+++ + A + N IRA +P+PGAW E+
Sbjct: 180 TLPQLEAGTLTPIPQDEEEATYAPKITKEDGRIDWSKPAAQILNKIRAFNPWPGAWTEL- 238
Query: 241 IGNKHERIKLLESQLVEG--EGKPGEVINPN---FTIACSQGAVRIMRLQRAGGRVLDIG 295
+RIK+ E++++EG GKPGE++ + +AC GA+R+ LQ AG + +
Sbjct: 239 ---GGKRIKIWEARVLEGASNGKPGEILAADKKGLLVACGDGALRLTELQPAGKKAMSAA 295
Query: 296 DFLLGCPVIIG 306
DFL G ++ G
Sbjct: 296 DFLNGRRLVKG 306
>gnl|CDD|38292 KOG3082, KOG3082, KOG3082, Methionyl-tRNA formyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 338
Score = 120 bits (303), Expect = 4e-28
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
L V+F+G+ EF++ L+ L+ V + + PP+ RR + + S +A L
Sbjct: 7 LNVIFLGSDEFSIPILRKLIGCVQ-RVRIVSAPPKRQSRRK-EILPSPAAMEANAKGLAY 64
Query: 63 LVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPI 122
+ G + + + + +A+ ++G ++P ++LN G N H SLLP++RGAAP+
Sbjct: 65 IKLQP-GWKNFHDLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAAPV 123
Query: 123 QRAIMAGDNETGIAIMKMDKH-LDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
QRA++ GD TG+ I +D D GP+ + ++ L LS L A+ ++ +
Sbjct: 124 QRALLNGDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPELTASLSSLGANLLIRS 183
Query: 182 MDKLEQNNLPLSPQIENGI--TYAEKISKGETRVNFCRSAENVHNHIRALSPFPG 234
+ L + Q I TYA KI E ++F S A +
Sbjct: 184 LYNLNDQLNTVKAQPHGRITDTYAPKIISKEAFISFQESWAKKITTEDAAIGWES 238
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase. This family
includes the following members. Glycinamide
ribonucleotide transformylase catalyses the third step
in de novo purine biosynthesis, the transfer of a formyl
group to 5'-phosphoribosylglycinamide.
Formyltetrahydrofolate deformylase produces formate from
formyl- tetrahydrofolate. Methionyl-tRNA
formyltransferase transfers a formyl group onto the
amino terminus of the acyl moiety of the methionyl
aminoacyl-tRNA. Inclusion of the following members is
supported by PSI-blast. HOXX_BRAJA (P31907) contains a
related domain of unknown function. PRTH_PORGI (P46071)
contains a related domain of unknown function.
Y09P_MYCTU (Q50721) contains a related domain of unknown
function.
Length = 181
Score = 118 bits (297), Expect = 2e-27
Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 3 LRVVFM--GTSEFAVATLQALVSSSHS--IVSVYTQPPRPAGRRGLKSVLSAVHKKAQEF 58
+++ + GT A L AL H IV+V T + AG + V F
Sbjct: 1 MKIAVLISGTGSNLQALLDALRKGGHEVEIVAVVTNKDKAAGLERAEQAGIPVE----VF 56
Query: 59 SLPALVPTKLGQEEY-EQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWR 117
P E + + D+ V+ Y ++P L A N H SLLPR+R
Sbjct: 57 EHKNFTPRSQFDSELADSLAALAPDLIVLAGYMRILPPEFLQAFPGKILNIHPSLLPRFR 116
Query: 118 GAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHA 177
GAAPIQRA+ AGD ETG+ + ++D+ LDTGP+ + VPI + + L ++ L A
Sbjct: 117 GAAPIQRALEAGDKETGVTVHQVDEELDTGPILAQKAVPILPDDTSETLYNRVAELEHKA 176
Query: 178 MVEA 181
+ EA
Sbjct: 177 LPEA 180
>gnl|CDD|37663 KOG2452, KOG2452, KOG2452, Formyltetrahydrofolate dehydrogenase
[Nucleotide transport and metabolism].
Length = 881
Score = 99.0 bits (246), Expect = 1e-21
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 14/244 (5%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
+++ +G S F L H +V V+T P + G+ + +A++ +P
Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDK-DGKADPLGL------EAEKDGVPV 53
Query: 63 LVPTKLGQ------EEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRW 116
++ + ++ + A++ V+ IP I++A + G H SLLPR
Sbjct: 54 FKYSRWRAKAQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRH 113
Query: 117 RGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQE-LSVLCA 175
RGA+ I ++ GD + G +I D LDTG + ++ + + + L L
Sbjct: 114 RGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGI 173
Query: 176 HAMVEAMDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGA 235
+V+A+ + + P PQ E G TY K ++N+ + AE +HN IR PGA
Sbjct: 174 KGVVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPGA 233
Query: 236 WLEM 239
W E
Sbjct: 234 WTEA 237
>gnl|CDD|145851 pfam02911, Formyl_trans_C, Formyl transferase, C-terminal domain.
Length = 99
Score = 98.9 bits (247), Expect = 2e-21
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 205 KISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHERIKLLESQLVE--GEGKP 262
KI+K + R+++ + AE +H IRALSP+PGA+ + K R+K+L++++VE G P
Sbjct: 1 KITKEDGRIDWSQPAEEIHRLIRALSPWPGAFT--FLNGK--RVKILKAEVVEDSGGAAP 56
Query: 263 GEVINPN---FTIACSQGAVRIMRLQRAGGRVLDIGDFLLG 300
G +++ + +AC GA+ I+ LQ G + + DFL G
Sbjct: 57 GTIVSVDKGGLLVACGDGALLILELQPEGKKAMSAADFLNG 97
>gnl|CDD|30647 COG0299, PurN, Folate-dependent phosphoribosylglycinamide
formyltransferase PurN [Nucleotide transport and
metabolism].
Length = 200
Score = 61.3 bits (149), Expect = 3e-10
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 53 KKAQEFSLPALVP---TKLGQEEYEQ-----FLSFNADVAVVVAYGLVIPQRILNATKLG 104
++A + +P +V +E +++ + D+ V+ Y ++ L+ +
Sbjct: 44 ERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGR 103
Query: 105 FYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTA 164
N H SLLP + G ++A+ AG +G + + + +DTGP+ VP+
Sbjct: 104 ILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAE 163
Query: 165 GLQQELSVLCAHAMVEAMDKLEQNNLPLSPQIENGITYAEK 205
L+ + A+ L + L +IE G +
Sbjct: 164 TLEARVLEQEHRLYPLAVKLLAEGRL----KIEGGRVILDG 200
>gnl|CDD|38286 KOG3076, KOG3076, KOG3076, 5'-phosphoribosylglycinamide
formyltransferase [Carbohydrate transport and
metabolism].
Length = 206
Score = 53.4 bits (128), Expect = 8e-08
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 54 KAQEFSLPALVPTKLGQEEYEQF--------LSFNADVAVVVAYGLVIPQRILNATKLGF 105
+A + +P LV E++ L D+ + Y ++ L+
Sbjct: 53 RAADAGIPTLVIPHKRFASREKYDNELAEVLLELGTDLVCLAGYMRILSGEFLSQLPKRI 112
Query: 106 YNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAG 165
N H +LLP ++G I++A+ AG +G + + + +DTGP+ VP+
Sbjct: 113 INIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIEEVDTGPIIAQMAVPVIPGDTLES 172
Query: 166 LQQELSVLCAHAMVEAMDKLEQNNLPLSP 194
L+Q + A VEA+ + + +
Sbjct: 173 LEQRVHDAEHKAFVEAIKAVCEGRVLPYE 201
>gnl|CDD|31131 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide
transport and metabolism].
Length = 287
Score = 32.1 bits (73), Expect = 0.18
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 58 FSLPALVPTKLGQEE--YEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPR 115
+P K E E + AD+ V+ Y ++ + N H S LP
Sbjct: 142 HHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPA 201
Query: 116 WRGAAPIQRAIMAGDNETGIAIMKMDKH-----LDTGPVAFMRKVPISSNINTAGLQQ 168
+ GA P +A E G+ ++ H LD GP+ + + + L +
Sbjct: 202 FIGANPYHQAY-----ERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSVEDLVR 254
>gnl|CDD|58618 cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acetyl-L-glutamate
kinase (NAGK) of the fungal arginine-biosynthetic
pathway (fArgBP). The nuclear-encoded, mitochondrial
polyprotein precursor with an N-terminal NAGK (ArgB)
domain (this CD), a central DUF619 domain, and a
C-terminal reductase domain (ArgC, N-Acetylglutamate
Phosphate Reductase, NAGPR). The precursor is cleaved in
the mitochondria into two distinct enzymes (NAGK-DUF619
and NAGPR). Native molecular weights of these proteins
indicate that the kinase is an octamer whereas the
reductase is a dimer. This CD also includes some
gamma-proteobacteria (Xanthomonas and Xylella) NAG
kinases with an N-terminal NAGK (ArgB) domain (this CD)
and a C-terminal DUF619 domain. The DUF619 domain is
described as a putative distant homolog of the
acetyltransferase, ArgA, predicted to function in NAG
synthase association in fungi. Eukaryotic sequences have
an N-terminal mitochondrial transit peptide. Members of
this NAG kinase domain CD belong to the Amino Acid
Kinase Superfamily (AAK)..
Length = 248
Score = 31.0 bits (70), Expect = 0.37
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 4 RVVFMGTSEFAVATLQALVSSSHSIVS-VYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
R VF+ + V L+ + + I S V+ + GL ++ V+K E ++ A
Sbjct: 70 RKVFLEENLKLVEALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRA 129
Query: 63 -LVP--TKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLL 113
+P T L + Q L+ NADVA A L R+L K+ F N LL
Sbjct: 130 GYLPILTSLAETPSGQLLNVNADVA---AGELA---RVLEPLKIVFLNETGGLL 177
>gnl|CDD|30791 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 500
Score = 29.4 bits (66), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 37 RPAGRRGLKSVLSAVHKK-----AQEFSLPALVPTKLGQE--EYEQF 76
P G R L+ + + + ++ AQE P L+P +L +E +E F
Sbjct: 43 LPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGF 89
>gnl|CDD|37118 KOG1907, KOG1907, KOG1907, Phosphoribosylformylglycinamidine
synthase [Nucleotide transport and metabolism].
Length = 1320
Score = 27.6 bits (61), Expect = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 212 RVNFCRSAENVHNHIRALSPFPGA 235
+ AE HNH A+SPFPGA
Sbjct: 303 PSDLLFKAET-HNHPTAVSPFPGA 325
>gnl|CDD|145541 pfam02455, Hex_IIIa, Hexon-associated protein (IIIa). The major
capsid protein of the adenovirus strain is also known
as a hexon. This is a family of hexon-associated
proteins (protein IIIa).
Length = 491
Score = 26.6 bits (59), Expect = 8.6
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 59 SLPALVPTKLGQEEYEQFLS 78
+LPA V GQE YE F S
Sbjct: 78 TLPATVE--RGQENYEAFKS 95
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,647,107
Number of extensions: 187255
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 17
Length of query: 310
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 216
Effective length of database: 4,232,491
Effective search space: 914218056
Effective search space used: 914218056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)