RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764462|ref|YP_003064709.2| methionyl-tRNA
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(310 letters)
>gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.
Length = 309
Score = 381 bits (980), Expect = e-106
Identities = 144/314 (45%), Positives = 198/314 (63%), Gaps = 11/314 (3%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
+R+VFMGT EFAV +L+AL+ S H +V+V TQP RPAGR G K S V + A E +P
Sbjct: 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGR-GKKLTPSPVKQLALEHGIPV 59
Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
L P KL E + + NADV VVVAYG ++P+ +L+ +LG N HASLLPRWRGAAP
Sbjct: 60 LQPEKLRDPEFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAP 119
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
IQRAI+AGD ETG+ IM+MD+ LDTG + +VPI+ L +L+ L A +VE
Sbjct: 120 IQRAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVET 179
Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMI 241
+ LE L PQ E G+TYA KISK E R+++ + A + NHIR +P+PGAW E
Sbjct: 180 LKGLEDGTLTPIPQDEEGVTYAPKISKEEARIDWSKPAAELENHIRGFNPWPGAWTE--- 236
Query: 242 GNKHERIKLLESQLVE--GEGKPGEVINPN---FTIACSQGAVRIMRLQRAGGRVLDIGD 296
+R+K+LE++LVE G G PG ++ + +A +GA+R+ +LQ G + + D
Sbjct: 237 -LDGQRLKILEAELVEASGSGAPGTILAIDKDGIVVATGEGALRLTQLQPPGKKPMSAAD 295
Query: 297 FLLGCPVIIGCIVG 310
FL G + +G +G
Sbjct: 296 FLNGRRLEVGDRLG 309
>gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring
characterized proteins other than methionyl-tRNA
formyltransferase (fmt) itself are
formyltetrahydrofolate dehydrogenases. The mitochondrial
methionyl-tRNA formyltransferases are so divergent that,
in a multiple alignment of bacterial fmt, mitochondrial
fmt, and formyltetrahydrofolate dehydrogenases, the
mitochondrial fmt appears the most different. However,
because both bacterial and mitochondrial fmt are
included in the seed alignment, all credible fmt
sequences score higher than any non-fmt sequence. This
enzyme modifies Met on initiator tRNA to f-Met.
Length = 313
Score = 231 bits (590), Expect = 2e-61
Identities = 111/306 (36%), Positives = 163/306 (53%), Gaps = 13/306 (4%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
LR+VF GT F++ L+ L + +V V TQP +PAGR G K V A+E +P
Sbjct: 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGR-GKKLTPPPVKVLAEEKGIPV 59
Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
P K EE DV VVV++G ++P+ L+ G N H SLLPRWRG AP
Sbjct: 60 FQPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAP 119
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
IQRAI+ GD +TG+ IM+M +D G + PI N+ L +LS L A ++E
Sbjct: 120 IQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIET 179
Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMI 241
+ +L + PQ TYA KISK + R+++ +SAE + N IRAL+P+P AWL
Sbjct: 180 LKELPEGKNKPEPQDAEEATYAPKISKEQERIDWNQSAEELLNKIRALNPWPTAWLT--- 236
Query: 242 GNKHERIKLLESQLVEGE---GKPGEVINPN----FTIACSQGAVRIMRLQRAGGRVLDI 294
+ + IK+ ++++++ KPGE++ N G + ++ LQ G +V+
Sbjct: 237 -FEGKNIKIHKAKVIDLSTYKAKPGEIVYHNKKGILVACGKDGILLLLSLQPPGKKVMRA 295
Query: 295 GDFLLG 300
DF G
Sbjct: 296 EDFYNG 301
>gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase.
Length = 334
Score = 161 bits (409), Expect = 2e-40
Identities = 94/319 (29%), Positives = 159/319 (49%), Gaps = 26/319 (8%)
Query: 4 RVVFMGTSEFAVATLQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVHKKAQE 57
R+VF+GT E A L AL+ +S + + +V TQPP GR G K + S V + A +
Sbjct: 8 RLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGR-GRKLMPSPVAQLALD 66
Query: 58 FSLPA---LVPTKLGQEEYEQFL-SFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLL 113
P P K G+E++ L D+ + AYG ++PQ+ L+ KLG N H SLL
Sbjct: 67 RGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLL 126
Query: 114 PRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVL 173
P +RGAAP+QRA+ G NETG+++ + LD GPV +V + +I L L L
Sbjct: 127 PLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFEL 186
Query: 174 CAHAMVEAMDKLEQNNLPL--SPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSP 231
++ + + + +PQ ++ T+A KIS E+ ++F A +HN +RA +
Sbjct: 187 GTKLLLRELPSVLDGSAKDKATPQDDSKATHAPKISPEESWLSFDEEARVLHNKVRAFAG 246
Query: 232 FPGAWLEMMIGNKHE------RIKLLESQLVEGEGKPGEVIN------PNFTIACSQG-A 278
+PG + + + + +K++ +++ E G+ + + + C G
Sbjct: 247 WPGTRAKFQLVDDGDGEREVLELKIITTRVCEAGGEQTGSADAVTFKKDSLLVPCGGGTW 306
Query: 279 VRIMRLQRAGGRVLDIGDF 297
+ ++ +Q G +V+ DF
Sbjct: 307 LEVLEVQPPGKKVMKAKDF 325
>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
formyltransferase; Validated.
Length = 660
Score = 118 bits (299), Expect = 1e-27
Identities = 70/277 (25%), Positives = 135/277 (48%), Gaps = 13/277 (4%)
Query: 18 LQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEEY-EQF 76
++AL+++ + I +V+T P G +V + A E +P P + + E+
Sbjct: 16 IEALLAAGYEIAAVFTHTDNP----GENHFFGSVARLAAELGIPVYAPEDVNHPLWVERI 71
Query: 77 LSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIA 136
DV Y ++ IL G +N H SLLP++RG AP+ ++ G+ ETG+
Sbjct: 72 RELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVT 131
Query: 137 IMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSPQI 196
+ +M K D G + ++V I+ + L +L + + + ++ N+P PQ
Sbjct: 132 LHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIPQD 191
Query: 197 ENGITYAEKISKGETRVNFCRSAENVHNHIRALS-PFPGAWLEMMIGNKHERIKLLESQL 255
E+ TY + + + +++ + A +HN +RA++ P+PGA+ +G + + + S++
Sbjct: 192 ESQATYFGRRTPADGLIDWHKPASTLHNLVRAVTDPWPGAF--SYVGEQ--KFTVWSSRV 247
Query: 256 VEGE--GKPGEVINPN-FTIACSQGAVRIMRLQRAGG 289
+ +PG V++ IAC +GA+ I+ Q G
Sbjct: 248 LPDASGAQPGTVLSVAPLRIACGEGALEIVTGQAGDG 284
>gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional.
Length = 312
Score = 86.3 bits (214), Expect = 9e-18
Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 22/301 (7%)
Query: 1 MTLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSL 60
M R V V LQ L++ + V T P SV + A E +
Sbjct: 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAV----AAEHGI 56
Query: 61 PALVPTKLGQEEYEQFLS-FNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGA 119
P + P E ++ D Y +IP +L G YN H SLLP++RG
Sbjct: 57 PVITPADPNDPELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGR 116
Query: 120 APIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMV 179
P+ A++ G+ ETG + +M D G + VPI + A + +++V +
Sbjct: 117 VPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLW 176
Query: 180 EAMDKLEQNNLPLSPQ-IENGITYA-EKISKGETRVNFCRSAENVHNHIRALS-PFPGAW 236
+ L P P + G + K G R+++ + A V+N IRA++ P+PGA+
Sbjct: 177 RVLPALLAGEAPHLPNDLAQGSYFGGRKPEDG--RIDWSKPAAQVYNLIRAVAPPYPGAF 234
Query: 237 LEMMIGNKHERIKLLESQLVEGEG------KPGEVI--NPNFTIACSQGAVRIMRLQRAG 288
++ R + ++L PG + N F + AV I+ L+R
Sbjct: 235 TDL----GGTRFVVARARLAAPGAAAARDLPPGLHVSDNALFGVCGDGRAVSILELRRQQ 290
Query: 289 G 289
Sbjct: 291 D 291
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase,
formyltetrahydrofolate-dependent. In phylogenetic
analyses, the member from Saccharomyces cerevisiae shows
a long branch length but membership in the family, while
the formyltetrahydrofolate deformylases form a closely
related outgroup.
Length = 190
Score = 51.6 bits (124), Expect = 3e-07
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 37/160 (23%)
Query: 18 LQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALV------P 65
LQA++ + +V V + P G ++A + +P V P
Sbjct: 14 LQAIIDACKEGKIPASVVLVISNKPDAYGL-----------ERAAQAGIPTFVLSLKDFP 62
Query: 66 TKLGQEEYEQFLSFN---ADVAVVVAYGLVIPQRILNATKLGFYNG-----HASLLPRWR 117
++ E ++Q + +V +VV G + RIL T L + G H SLLP +
Sbjct: 63 SR---EAFDQAIIEELRAHEVDLVVLAGFM---RILGPTFLSRFAGRILNIHPSLLPAFP 116
Query: 118 GAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPI 157
G +++A+ AG E+G + +D+ +DTGP+ KVPI
Sbjct: 117 GLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPI 156
>gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase;
Reviewed.
Length = 200
Score = 50.9 bits (123), Expect = 5e-07
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 96 RILNATKLGFYNG-----HASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVA 150
RIL T + Y G H SLLP + G ++A+ AG G + +D+ LDTGP+
Sbjct: 91 RILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGPII 150
Query: 151 FMRKVPI 157
VP+
Sbjct: 151 AQAAVPV 157
>gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase. This model
describes formyltetrahydrofolate deformylases. The
enzyme is a homohexamer. Sequences from a related enzyme
formyl tetrahydrofolate-specific enzyme,
phosphoribosylglycinamide formyltransferase, serve as an
outgroup for phylogenetic analysis. Putative members of
this family, scoring below the trusted cutoff, include a
sequence from Rhodobacter capsulatus that lacks an
otherwise conserved C-terminal region.
Length = 280
Score = 35.1 bits (81), Expect = 0.024
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 38/144 (26%)
Query: 55 AQEFSLP-ALVP-TKLGQEEYEQFL-----SFNADVAVVVAYGLV--------IPQRILN 99
+ F +P +P TK + E+E+ + D+ V+ Y + P +I+N
Sbjct: 128 VERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIIN 187
Query: 100 ATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKH-----LDTGPVAFMRK 154
H S LP + GA P QRA E G+ I+ H LD GP+
Sbjct: 188 I--------HHSFLPAFIGANPYQRAY-----ERGVKIIGATAHYVTEELDEGPIIEQDV 234
Query: 155 VPISSNINT-----AGLQQELSVL 173
V + N AG E VL
Sbjct: 235 VRVDHTDNVEDLIRAGRDIEKVVL 258
>gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional.
Length = 245
Score = 34.1 bits (78), Expect = 0.044
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 107 NGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGL 166
N H P RG P +I+ + G I +MD+ LD GP+ R+V I S ++ +
Sbjct: 90 NIHPGFNPYNRGWFPQVFSII-NGLKIGATIHEMDEQLDHGPIIAQREVEIESWDSSGSV 148
Query: 167 QQELSVLCAHAMVEAMDKLEQNN-LPLSPQIENGITYAEKISKGETRVNFCR--SAENVH 223
+ + ++E D + + P E G ++K K ++ + +
Sbjct: 149 YARVMDIERELVLEHFDAIRDGSYTAKKPATE-GNLNSKKDFKQLREIDLDERGTFRHFI 207
Query: 224 NHIRALS--PFPGAWLEMMIGNK 244
N +RAL+ + A+ G K
Sbjct: 208 NRLRALTHDDYKNAYFVDESGRK 230
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase.
Length = 207
Score = 33.9 bits (78), Expect = 0.058
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 39 AGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRIL 98
A G+ ++ K + L P +L + D ++ Y +IP ++
Sbjct: 45 ARENGIPVLVYPKTKGEPD----GLSPDEL----VDALRGAGVDFVLLAGYLKLIPVELV 96
Query: 99 NATKLGFYNGHASLLPRWRGAA----PIQRAIMA-GDNETGIAIMKMDKHLDTGPVAFMR 153
A N H +LLP + G + +A++A G +G + +D+H DTG + R
Sbjct: 97 RAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQR 156
Query: 154 KVPISSN 160
VP+ +
Sbjct: 157 VVPVLAT 163
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase.
Length = 268
Score = 32.4 bits (74), Expect = 0.15
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 64 VPTKLGQEEYEQFLSF--NADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
+PT + ++ L D V+ Y ++ L N H LLP ++G P
Sbjct: 129 LPTTKENKREDEILELVKGTDFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNP 188
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPV 149
++A AG G + + LD GP+
Sbjct: 189 SKQAFDAGVKLIGATSHFVTEELDAGPI 216
>gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1290
Score = 29.8 bits (68), Expect = 0.89
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 223 HNHIRALSPFPGA 235
HNH A+SPFPGA
Sbjct: 292 HNHPTAISPFPGA 304
>gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II.
Prolyl-tRNA synthetase is a class II tRNA synthetase
and is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent groups. This group includes enzymes from
Escherichia coli, Bacillus subtilis, Aquifex aeolicus,
the spirochete Treponema pallidum, Synechocystis
PCC6803, and one of the two prolyL-tRNA synthetases of
Saccharomyces cerevisiae. The other group includes the
Pro-specific domain of a human multifunctional tRNA
ligase and the prolyl-tRNA synthetases from the
Archaea, the Mycoplasmas, and the spirochete Borrelia
burgdorferi.
Length = 568
Score = 29.8 bits (67), Expect = 1.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 38 PAGRRGLKSVLSAVHKK-----AQEFSLPALVPTKLGQE 71
P G R LK V + V ++ A E LPAL P +L QE
Sbjct: 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE 82
>gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 28.7 bits (65), Expect = 2.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 275 SQGAVRIMRLQRAGGRVLDIG 295
++ AVRIM+ Q GG ++ I
Sbjct: 537 AREAVRIMKAQGLGGSIVFIA 557
>gnl|CDD|131712 TIGR02664, nitr_red_assoc, conserved hypothetical protein. Most
members of this protein family are found in the
Cyanobacteria, and these mostly near nitrate reductase
genes and molybdopterin biosynthesis genes. We note that
molybdopterin guanine dinucleotide is a cofactor for
nitrate reductase. This protein is sometimes annotated
as nitrate reductase-associated protein. Its function is
unknown.
Length = 145
Score = 27.9 bits (62), Expect = 3.5
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 18 LQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTK 67
L+ L+ + P A + + ++ A+ +A E L AL ++
Sbjct: 64 LRDLLRTHADTPPSDLPPDEHAAWQSVSALPDAIVAQAGEVGLVALTASQ 113
>gnl|CDD|180896 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 27.8 bits (63), Expect = 3.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 249 KLLESQLVEGEGKPGEVIN 267
K+L + LVEGE +PGE I
Sbjct: 8 KILYAHLVEGELEPGEEIA 26
>gnl|CDD|172166 PRK13603, PRK13603, fumarate reductase subunit C; Provisional.
Length = 126
Score = 27.3 bits (60), Expect = 4.6
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 25/73 (34%)
Query: 69 GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP----IQ- 123
G Y++FL F+A+ VVV LN L F HA W G+AP IQ
Sbjct: 49 GGNSYQRFLDFSANPVVVV----------LNVVALSFLLLHAV---TWFGSAPRAMVIQV 95
Query: 124 -------RAIMAG 129
RA++AG
Sbjct: 96 RGRRVPARAVLAG 108
>gnl|CDD|183715 PRK12743, PRK12743, oxidoreductase; Provisional.
Length = 256
Score = 27.3 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 274 CSQGAVRIMRLQRAGGRVLDI 294
CSQ A R M Q GGR+++I
Sbjct: 118 CSQIAARHMVKQGQGGRIINI 138
>gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This form is found mostly in eukaryotes and
Proteobacteria. In Bacillus subtilis PurL (FGAM synthase
II) and PurQ (FGAM synthase I), homologous to different
parts of this model, perform the equivalent function;
the unrelated small protein PurS is also required and
may be a third subunit.
Length = 1310
Score = 27.1 bits (60), Expect = 5.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 223 HNHIRALSPFPGA 235
HNH A++PFPGA
Sbjct: 298 HNHPTAIAPFPGA 310
>gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 26.8 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 63 LVPTKLGQEEYEQFLS 78
L+PTKLG + YE +LS
Sbjct: 1115 LIPTKLGIKVYE-YLS 1129
>gnl|CDD|173329 PTZ00031, PTZ00031, ribosomal protein L2; Provisional.
Length = 317
Score = 26.7 bits (59), Expect = 8.4
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 61 PALVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAA 120
P L+PT + ++ L + +V+ G V+ Q K N + R RG
Sbjct: 29 PDLLPTPFTMAKQQRLLKLLENNPLVLYKGRVVKQLSCRRVKNSGRNNVGRITTRHRGGG 88
Query: 121 PIQR 124
+QR
Sbjct: 89 HVQR 92
>gnl|CDD|171894 PRK13195, PRK13195, pyrrolidone-carboxylate peptidase; Provisional.
Length = 222
Score = 26.5 bits (58), Expect = 9.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 147 GPVAFMRKVPISSNI---NTAGLQQELS-----VLCAHAMVEAMDKLEQNNLPL 192
GPVA+ VP+ + + AG+ ++S +C H M + L Q LP+
Sbjct: 111 GPVAYHATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPV 164
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,081,968
Number of extensions: 325278
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 30
Length of query: 310
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 217
Effective length of database: 3,984,929
Effective search space: 864729593
Effective search space used: 864729593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)