RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus str. psy62] (310 letters) >gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed. Length = 309 Score = 381 bits (980), Expect = e-106 Identities = 144/314 (45%), Positives = 198/314 (63%), Gaps = 11/314 (3%) Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62 +R+VFMGT EFAV +L+AL+ S H +V+V TQP RPAGR G K S V + A E +P Sbjct: 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGR-GKKLTPSPVKQLALEHGIPV 59 Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121 L P KL E + + NADV VVVAYG ++P+ +L+ +LG N HASLLPRWRGAAP Sbjct: 60 LQPEKLRDPEFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAP 119 Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181 IQRAI+AGD ETG+ IM+MD+ LDTG + +VPI+ L +L+ L A +VE Sbjct: 120 IQRAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVET 179 Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMI 241 + LE L PQ E G+TYA KISK E R+++ + A + NHIR +P+PGAW E Sbjct: 180 LKGLEDGTLTPIPQDEEGVTYAPKISKEEARIDWSKPAAELENHIRGFNPWPGAWTE--- 236 Query: 242 GNKHERIKLLESQLVE--GEGKPGEVINPN---FTIACSQGAVRIMRLQRAGGRVLDIGD 296 +R+K+LE++LVE G G PG ++ + +A +GA+R+ +LQ G + + D Sbjct: 237 -LDGQRLKILEAELVEASGSGAPGTILAIDKDGIVVATGEGALRLTQLQPPGKKPMSAAD 295 Query: 297 FLLGCPVIIGCIVG 310 FL G + +G +G Sbjct: 296 FLNGRRLEVGDRLG 309 >gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. Length = 313 Score = 231 bits (590), Expect = 2e-61 Identities = 111/306 (36%), Positives = 163/306 (53%), Gaps = 13/306 (4%) Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62 LR+VF GT F++ L+ L + +V V TQP +PAGR G K V A+E +P Sbjct: 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGR-GKKLTPPPVKVLAEEKGIPV 59 Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121 P K EE DV VVV++G ++P+ L+ G N H SLLPRWRG AP Sbjct: 60 FQPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAP 119 Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181 IQRAI+ GD +TG+ IM+M +D G + PI N+ L +LS L A ++E Sbjct: 120 IQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIET 179 Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMI 241 + +L + PQ TYA KISK + R+++ +SAE + N IRAL+P+P AWL Sbjct: 180 LKELPEGKNKPEPQDAEEATYAPKISKEQERIDWNQSAEELLNKIRALNPWPTAWLT--- 236 Query: 242 GNKHERIKLLESQLVEGE---GKPGEVINPN----FTIACSQGAVRIMRLQRAGGRVLDI 294 + + IK+ ++++++ KPGE++ N G + ++ LQ G +V+ Sbjct: 237 -FEGKNIKIHKAKVIDLSTYKAKPGEIVYHNKKGILVACGKDGILLLLSLQPPGKKVMRA 295 Query: 295 GDFLLG 300 DF G Sbjct: 296 EDFYNG 301 >gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase. Length = 334 Score = 161 bits (409), Expect = 2e-40 Identities = 94/319 (29%), Positives = 159/319 (49%), Gaps = 26/319 (8%) Query: 4 RVVFMGTSEFAVATLQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVHKKAQE 57 R+VF+GT E A L AL+ +S + + +V TQPP GR G K + S V + A + Sbjct: 8 RLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGR-GRKLMPSPVAQLALD 66 Query: 58 FSLPA---LVPTKLGQEEYEQFL-SFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLL 113 P P K G+E++ L D+ + AYG ++PQ+ L+ KLG N H SLL Sbjct: 67 RGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLL 126 Query: 114 PRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVL 173 P +RGAAP+QRA+ G NETG+++ + LD GPV +V + +I L L L Sbjct: 127 PLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFEL 186 Query: 174 CAHAMVEAMDKLEQNNLPL--SPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSP 231 ++ + + + +PQ ++ T+A KIS E+ ++F A +HN +RA + Sbjct: 187 GTKLLLRELPSVLDGSAKDKATPQDDSKATHAPKISPEESWLSFDEEARVLHNKVRAFAG 246 Query: 232 FPGAWLEMMIGNKHE------RIKLLESQLVEGEGKPGEVIN------PNFTIACSQG-A 278 +PG + + + + +K++ +++ E G+ + + + C G Sbjct: 247 WPGTRAKFQLVDDGDGEREVLELKIITTRVCEAGGEQTGSADAVTFKKDSLLVPCGGGTW 306 Query: 279 VRIMRLQRAGGRVLDIGDF 297 + ++ +Q G +V+ DF Sbjct: 307 LEVLEVQPPGKKVMKAKDF 325 >gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated. Length = 660 Score = 118 bits (299), Expect = 1e-27 Identities = 70/277 (25%), Positives = 135/277 (48%), Gaps = 13/277 (4%) Query: 18 LQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEEY-EQF 76 ++AL+++ + I +V+T P G +V + A E +P P + + E+ Sbjct: 16 IEALLAAGYEIAAVFTHTDNP----GENHFFGSVARLAAELGIPVYAPEDVNHPLWVERI 71 Query: 77 LSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIA 136 DV Y ++ IL G +N H SLLP++RG AP+ ++ G+ ETG+ Sbjct: 72 RELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVT 131 Query: 137 IMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSPQI 196 + +M K D G + ++V I+ + L +L + + + ++ N+P PQ Sbjct: 132 LHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIPQD 191 Query: 197 ENGITYAEKISKGETRVNFCRSAENVHNHIRALS-PFPGAWLEMMIGNKHERIKLLESQL 255 E+ TY + + + +++ + A +HN +RA++ P+PGA+ +G + + + S++ Sbjct: 192 ESQATYFGRRTPADGLIDWHKPASTLHNLVRAVTDPWPGAF--SYVGEQ--KFTVWSSRV 247 Query: 256 VEGE--GKPGEVINPN-FTIACSQGAVRIMRLQRAGG 289 + +PG V++ IAC +GA+ I+ Q G Sbjct: 248 LPDASGAQPGTVLSVAPLRIACGEGALEIVTGQAGDG 284 >gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional. Length = 312 Score = 86.3 bits (214), Expect = 9e-18 Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 22/301 (7%) Query: 1 MTLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSL 60 M R V V LQ L++ + V T P SV + A E + Sbjct: 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAV----AAEHGI 56 Query: 61 PALVPTKLGQEEYEQFLS-FNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGA 119 P + P E ++ D Y +IP +L G YN H SLLP++RG Sbjct: 57 PVITPADPNDPELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGR 116 Query: 120 APIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMV 179 P+ A++ G+ ETG + +M D G + VPI + A + +++V + Sbjct: 117 VPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLW 176 Query: 180 EAMDKLEQNNLPLSPQ-IENGITYA-EKISKGETRVNFCRSAENVHNHIRALS-PFPGAW 236 + L P P + G + K G R+++ + A V+N IRA++ P+PGA+ Sbjct: 177 RVLPALLAGEAPHLPNDLAQGSYFGGRKPEDG--RIDWSKPAAQVYNLIRAVAPPYPGAF 234 Query: 237 LEMMIGNKHERIKLLESQLVEGEG------KPGEVI--NPNFTIACSQGAVRIMRLQRAG 288 ++ R + ++L PG + N F + AV I+ L+R Sbjct: 235 TDL----GGTRFVVARARLAAPGAAAARDLPPGLHVSDNALFGVCGDGRAVSILELRRQQ 290 Query: 289 G 289 Sbjct: 291 D 291 >gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. Length = 190 Score = 51.6 bits (124), Expect = 3e-07 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 37/160 (23%) Query: 18 LQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALV------P 65 LQA++ + +V V + P G ++A + +P V P Sbjct: 14 LQAIIDACKEGKIPASVVLVISNKPDAYGL-----------ERAAQAGIPTFVLSLKDFP 62 Query: 66 TKLGQEEYEQFLSFN---ADVAVVVAYGLVIPQRILNATKLGFYNG-----HASLLPRWR 117 ++ E ++Q + +V +VV G + RIL T L + G H SLLP + Sbjct: 63 SR---EAFDQAIIEELRAHEVDLVVLAGFM---RILGPTFLSRFAGRILNIHPSLLPAFP 116 Query: 118 GAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPI 157 G +++A+ AG E+G + +D+ +DTGP+ KVPI Sbjct: 117 GLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPI 156 >gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed. Length = 200 Score = 50.9 bits (123), Expect = 5e-07 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 96 RILNATKLGFYNG-----HASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVA 150 RIL T + Y G H SLLP + G ++A+ AG G + +D+ LDTGP+ Sbjct: 91 RILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGPII 150 Query: 151 FMRKVPI 157 VP+ Sbjct: 151 AQAAVPV 157 >gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. Length = 280 Score = 35.1 bits (81), Expect = 0.024 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 38/144 (26%) Query: 55 AQEFSLP-ALVP-TKLGQEEYEQFL-----SFNADVAVVVAYGLV--------IPQRILN 99 + F +P +P TK + E+E+ + D+ V+ Y + P +I+N Sbjct: 128 VERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIIN 187 Query: 100 ATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKH-----LDTGPVAFMRK 154 H S LP + GA P QRA E G+ I+ H LD GP+ Sbjct: 188 I--------HHSFLPAFIGANPYQRAY-----ERGVKIIGATAHYVTEELDEGPIIEQDV 234 Query: 155 VPISSNINT-----AGLQQELSVL 173 V + N AG E VL Sbjct: 235 VRVDHTDNVEDLIRAGRDIEKVVL 258 >gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional. Length = 245 Score = 34.1 bits (78), Expect = 0.044 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 107 NGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGL 166 N H P RG P +I+ + G I +MD+ LD GP+ R+V I S ++ + Sbjct: 90 NIHPGFNPYNRGWFPQVFSII-NGLKIGATIHEMDEQLDHGPIIAQREVEIESWDSSGSV 148 Query: 167 QQELSVLCAHAMVEAMDKLEQNN-LPLSPQIENGITYAEKISKGETRVNFCR--SAENVH 223 + + ++E D + + P E G ++K K ++ + + Sbjct: 149 YARVMDIERELVLEHFDAIRDGSYTAKKPATE-GNLNSKKDFKQLREIDLDERGTFRHFI 207 Query: 224 NHIRALS--PFPGAWLEMMIGNK 244 N +RAL+ + A+ G K Sbjct: 208 NRLRALTHDDYKNAYFVDESGRK 230 >gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase. Length = 207 Score = 33.9 bits (78), Expect = 0.058 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 39 AGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRIL 98 A G+ ++ K + L P +L + D ++ Y +IP ++ Sbjct: 45 ARENGIPVLVYPKTKGEPD----GLSPDEL----VDALRGAGVDFVLLAGYLKLIPVELV 96 Query: 99 NATKLGFYNGHASLLPRWRGAA----PIQRAIMA-GDNETGIAIMKMDKHLDTGPVAFMR 153 A N H +LLP + G + +A++A G +G + +D+H DTG + R Sbjct: 97 RAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQR 156 Query: 154 KVPISSN 160 VP+ + Sbjct: 157 VVPVLAT 163 >gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase. Length = 268 Score = 32.4 bits (74), Expect = 0.15 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 64 VPTKLGQEEYEQFLSF--NADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121 +PT + ++ L D V+ Y ++ L N H LLP ++G P Sbjct: 129 LPTTKENKREDEILELVKGTDFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNP 188 Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPV 149 ++A AG G + + LD GP+ Sbjct: 189 SKQAFDAGVKLIGATSHFVTEELDAGPI 216 >gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1290 Score = 29.8 bits (68), Expect = 0.89 Identities = 10/13 (76%), Positives = 11/13 (84%) Query: 223 HNHIRALSPFPGA 235 HNH A+SPFPGA Sbjct: 292 HNHPTAISPFPGA 304 >gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. Length = 568 Score = 29.8 bits (67), Expect = 1.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Query: 38 PAGRRGLKSVLSAVHKK-----AQEFSLPALVPTKLGQE 71 P G R LK V + V ++ A E LPAL P +L QE Sbjct: 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQE 82 >gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated. Length = 681 Score = 28.7 bits (65), Expect = 2.1 Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 275 SQGAVRIMRLQRAGGRVLDIG 295 ++ AVRIM+ Q GG ++ I Sbjct: 537 AREAVRIMKAQGLGGSIVFIA 557 >gnl|CDD|131712 TIGR02664, nitr_red_assoc, conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown. Length = 145 Score = 27.9 bits (62), Expect = 3.5 Identities = 10/50 (20%), Positives = 21/50 (42%) Query: 18 LQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTK 67 L+ L+ + P A + + ++ A+ +A E L AL ++ Sbjct: 64 LRDLLRTHADTPPSDLPPDEHAAWQSVSALPDAIVAQAGEVGLVALTASQ 113 >gnl|CDD|180896 PRK07229, PRK07229, aconitate hydratase; Validated. Length = 646 Score = 27.8 bits (63), Expect = 3.5 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 249 KLLESQLVEGEGKPGEVIN 267 K+L + LVEGE +PGE I Sbjct: 8 KILYAHLVEGELEPGEEIA 26 >gnl|CDD|172166 PRK13603, PRK13603, fumarate reductase subunit C; Provisional. Length = 126 Score = 27.3 bits (60), Expect = 4.6 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 25/73 (34%) Query: 69 GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP----IQ- 123 G Y++FL F+A+ VVV LN L F HA W G+AP IQ Sbjct: 49 GGNSYQRFLDFSANPVVVV----------LNVVALSFLLLHAV---TWFGSAPRAMVIQV 95 Query: 124 -------RAIMAG 129 RA++AG Sbjct: 96 RGRRVPARAVLAG 108 >gnl|CDD|183715 PRK12743, PRK12743, oxidoreductase; Provisional. Length = 256 Score = 27.3 bits (61), Expect = 4.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 274 CSQGAVRIMRLQRAGGRVLDI 294 CSQ A R M Q GGR+++I Sbjct: 118 CSQIAARHMVKQGQGGRIINI 138 >gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. Length = 1310 Score = 27.1 bits (60), Expect = 5.4 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 223 HNHIRALSPFPGA 235 HNH A++PFPGA Sbjct: 298 HNHPTAIAPFPGA 310 >gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed. Length = 1176 Score = 26.8 bits (60), Expect = 7.8 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 1/16 (6%) Query: 63 LVPTKLGQEEYEQFLS 78 L+PTKLG + YE +LS Sbjct: 1115 LIPTKLGIKVYE-YLS 1129 >gnl|CDD|173329 PTZ00031, PTZ00031, ribosomal protein L2; Provisional. Length = 317 Score = 26.7 bits (59), Expect = 8.4 Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 61 PALVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAA 120 P L+PT + ++ L + +V+ G V+ Q K N + R RG Sbjct: 29 PDLLPTPFTMAKQQRLLKLLENNPLVLYKGRVVKQLSCRRVKNSGRNNVGRITTRHRGGG 88 Query: 121 PIQR 124 +QR Sbjct: 89 HVQR 92 >gnl|CDD|171894 PRK13195, PRK13195, pyrrolidone-carboxylate peptidase; Provisional. Length = 222 Score = 26.5 bits (58), Expect = 9.9 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Query: 147 GPVAFMRKVPISSNI---NTAGLQQELS-----VLCAHAMVEAMDKLEQNNLPL 192 GPVA+ VP+ + + AG+ ++S +C H M + L Q LP+ Sbjct: 111 GPVAYHATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPV 164 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0620 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,081,968 Number of extensions: 325278 Number of successful extensions: 618 Number of sequences better than 10.0: 1 Number of HSP's gapped: 605 Number of HSP's successfully gapped: 30 Length of query: 310 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 217 Effective length of database: 3,984,929 Effective search space: 864729593 Effective search space used: 864729593 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.0 bits)