RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764462|ref|YP_003064709.2| methionyl-tRNA
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(310 letters)
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 132 bits (332), Expect = 3e-32
Identities = 82/203 (40%), Positives = 114/203 (56%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
LR++F GT +FA L AL+SS H++V V+TQP RPAGR ++
Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 63
Query: 63 LVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPI 122
+ QE + ADV VVVAYGL++P+ +L +LG N H SLLPRWRGAAPI
Sbjct: 64 QPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPI 123
Query: 123 QRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAM 182
QR++ AGD ETG+ IM+MD LDTG + + PI++ + L +L+ L ++ +
Sbjct: 124 QRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTL 183
Query: 183 DKLEQNNLPLSPQIENGITYAEK 205
+L Q E +TYAEK
Sbjct: 184 KQLADGTAKPEVQDETLVTYAEK 206
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 108 bits (271), Expect = 5e-25
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 2/202 (0%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
+++ +G S F L H +V V+T P + G+ + +
Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKD-GKADPLGLEAEKDGVPVFKYSRW 59
Query: 63 LVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPI 122
+ + ++ + A++ V+ IP I++A + G H SLLPR RGA+ I
Sbjct: 60 RAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAI 119
Query: 123 QRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQE-LSVLCAHAMVEA 181
++ GD + G +I D LDTG + ++ + + + L L MV+A
Sbjct: 120 NWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQA 179
Query: 182 MDKLEQNNLPLSPQIENGITYA 203
+ + + P PQ E G TY
Sbjct: 180 VRLIAEGKAPRLPQPEEGATYE 201
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 203
Score = 107 bits (267), Expect = 1e-24
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 5/206 (2%)
Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62
++ V + ++AL+++ + I +++T P G K+ +V + A E +P
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNP----GEKAFYGSVARLAAERGIPV 56
Query: 63 L-VPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121
E+ + DV Y +I IL G +N H SLLP++RG AP
Sbjct: 57 YAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAP 116
Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181
+ ++ G+ ETG+ + +M K D G + ++ I+ + L +L + +
Sbjct: 117 LNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQT 176
Query: 182 MDKLEQNNLPLSPQIENGITYAEKIS 207
+ ++ N+ Q EN T + +
Sbjct: 177 LPAIKHGNILEIAQRENEATCFGRRT 202
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 79.0 bits (194), Expect = 5e-16
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 7/134 (5%)
Query: 70 QEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAG 129
+ +E+ N + + + +IP+ I H + LP RG +P+Q I G
Sbjct: 37 ELTFEKVKLINPEYILFPHWSWIIPKEIFE--NFTCVVFHMTDLPFGRGGSPLQNLIERG 94
Query: 130 DNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQNN 189
+T I+ +K+D +DTG + F R + + + S + + + +L
Sbjct: 95 IKKTKISAIKVDGGIDTGDIFFKRDLDLYGTAEE--IFMRASKIIF---NDMIPELLTKR 149
Query: 190 LPLSPQIENGITYA 203
Q +
Sbjct: 150 PVPQKQEGEATVFQ 163
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate
dehydrogenase domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 77.5 bits (190), Expect = 1e-15
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 208 KGETRVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHERIKLLESQLVEGE-------- 259
K ++N+ + AE +HN IR PGAW E +++ S L
Sbjct: 3 KETAKINWDQPAEAIHNWIRGNDKVPGAWTEA----CEQKLTFFNSTLNTSGLVPEGDAL 58
Query: 260 -----GKPGEVI-NPNFTIACSQGAVRIMRLQRAGGRVLDIGDFL 298
+PG V + + +Q G+++ +F
Sbjct: 59 PIPGAHRPGVVTKAGLILFGNDDKMLLVKNIQLEDGKMILASNFF 103
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 108
Score = 74.4 bits (182), Expect = 1e-14
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 206 ISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHERIKLLESQLVEGEGKPGEV 265
+SK E R+++ SA + IRA +P+P +WLE+ + ++ PG +
Sbjct: 1 LSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEIE--GQPVKVWKASVIDTATNAAPGTI 58
Query: 266 INPN---FTIACSQGAVRIMRLQRAGGRVLDIGDFLLG 300
+ N +A G + ++ LQ AG + + D L
Sbjct: 59 LEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNS 96
>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA,
domain 2 {Escherichia coli [TaxId: 562]}
Length = 101
Score = 66.0 bits (160), Expect = 4e-12
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 210 ETRVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHERIKLLESQLVEGEGKPGEVI--- 266
++ + + + A +HN +RA++ + +++ + S++ K
Sbjct: 2 DSFLEWHKPASVLHNMVRAVADPWPGAFSYV---GNQKFTVWSSRVHPHASKAQPGSVIS 58
Query: 267 NPNFTIACSQGAVRIMRLQRAGGRVLDIGDFLLGCPVIIGCIV 309
IAC GA+ I+ Q G + ++ G +
Sbjct: 59 VAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRL 101
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Escherichia coli [TaxId: 562]}
Length = 209
Score = 61.4 bits (148), Expect = 9e-11
Identities = 36/213 (16%), Positives = 76/213 (35%), Gaps = 22/213 (10%)
Query: 3 LRVVFM----GTSEFAVATLQALVSSSHS------IVSVYTQPPRPAGRRGLKSVLSAVH 52
+ +V + G++ LQA++ + + + +V++ GL+ A
Sbjct: 1 MNIVVLISGNGSN------LQAIIDACKTNKIKGTVRAVFSNKADA---FGLERARQAGI 51
Query: 53 KKAQEFSLPALVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASL 112
+ +E + + DV V+ + ++ ++ N H SL
Sbjct: 52 ATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL 111
Query: 113 LPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSV 172
LP++ G ++A+ GD E G ++ + LD GPV KVP+ + + + +
Sbjct: 112 LPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQT 171
Query: 173 LCAHAMVEAMDKLEQNNLPLSPQIENGITYAEK 205
+ L + EN +
Sbjct: 172 QEHAIYPLVISWFADGRLKM---HENAAWLDGQ 201
>d1zgha1 b.46.1.1 (A:165-226) Methionyl-tRNAfmet formyltransferase,
C-terminal domain {Clostridium thermocellum [TaxId:
1515]}
Length = 62
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 210 ETRVNFCRSAENVHNHIRAL--SPFPGAWLEMMIGNKHERIKLLESQLVEGE 259
++ ++ E ++++IR L +P A+++ G R++ + + G+
Sbjct: 5 QSEISPDFDLEKIYDYIRMLDGEGYPRAFIK--YGKY--RLEFSRASMKNGK 52
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 25.8 bits (57), Expect = 4.6
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 212 RVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHERIKLLESQLVEGEGKPGEVINPN 269
V + I A + ++G K RI+ L + + + G P +
Sbjct: 27 GVEVRVTPTRTEIIILATRT------QNVLGEKGRRIRELTAVVQKRFGFPEGSVELY 78
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 24.8 bits (54), Expect = 8.4
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 15/77 (19%)
Query: 154 KVP-ISSNINTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSPQIENGITYAEKISKGETR 212
KV I +N+ +V AM L +P+ + + I
Sbjct: 4 KVQDIKNNL----------KEAIETIVAAMSNLVPPVELANPENQ---FRVDYILSVMNV 50
Query: 213 VNFCRSAENVHNHIRAL 229
+F E + H +AL
Sbjct: 51 PDFDFPPE-FYEHAKAL 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,976
Number of extensions: 49936
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 12
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)