HHsearch alignment for GI: 255764463 and conserved domain: TIGR03326

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=92.51  E-value=1.1  Score=25.89  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
Q ss_conf             99999999999999628973524667677999999999877885773003366643543010167531024467777443
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY  232 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sY  232 (337)
T Consensus       157 Ls~~~~a~~~ye~~~GG~D~iK----------------DDE~l~~q~f~p~~eRv~~~-----~~a~~~a~~eTG~~~~y  215 (412)
T TIGR03326       157 LSTEEHAKVAYELWSGGVDLLK----------------DDENLTSQPFNRFEERVEKL-----YKVRDKVEAETGERKEY  215 (412)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCEE
T ss_conf             9979999999999825777312----------------66456798876589999999-----99999999875874258


Q ss_pred             CCCCCHH-HHHHHHHHHHHHCCCCEEEECC---CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             1572114-7889888876640898799553---11458999999962499899993461899999999888978899999
Q gi|255764463|r  233 YLDPANV-QEAIREASIDIQESADMLLVKP---GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMM  308 (337)
Q Consensus       233 Qmd~~n~-~eA~~e~~~D~~EGAD~lMVKP---a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~  308 (337)
T Consensus       216 ~~NiT~~~~em~~ra~~a~e~G~~~vMv~~~~~G~sal~~lr~~~~d~~l~iha-HrA~~ga~~r-~p~~Gi-s~--~vl  290 (412)
T TIGR03326       216 LANITAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHA-HRAMHAAFTR-NPKHGI-SM--FAL  290 (412)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEE-CCCCCHHHHC-CCCCCC-CH--HHH
T ss_conf             864378999999999999983998797436324635999999862234977984-3664044443-876773-69--999


Q ss_pred             HHHHHHHHHCCCEEEEC
Q ss_conf             99999977269999820
Q gi|255764463|r  309 ESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       309 E~l~~~kRAGAd~IitY  325 (337)
T Consensus       291 --~Kl~RLaGaD~ih~~  305 (412)
T TIGR03326       291 --AKLYRLIGVDQLHTG  305 (412)
T ss_pred             --HHHHHHCCCCEEECC
T ss_conf             --999998398824227