Query         gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 337
No_of_seqs    171 out of 1711
Neff          4.7 
Searched_HMMs 39220
Date          Sun May 29 15:34:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764463.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam00490 ALAD Delta-aminolevu 100.0       0       0 1126.8  33.2  322   12-334     1-322 (322)
  2 cd04823 ALAD_PBGS_aspartate_ri 100.0       0       0 1122.2  33.2  320   15-335     1-320 (320)
  3 PRK09283 delta-aminolevulinic  100.0       0       0 1115.7  33.5  321   10-335     1-321 (321)
  4 COG0113 HemB Delta-aminolevuli 100.0       0       0 1106.1  33.0  328    9-337     2-330 (330)
  5 PRK13384 delta-aminolevulinic  100.0       0       0 1105.8  33.0  322    8-333     2-323 (323)
  6 cd00384 ALAD_PBGS Porphobilino 100.0       0       0 1092.2  33.1  314   18-334     1-314 (314)
  7 cd04824 eu_ALAD_PBGS_cysteine_ 100.0       0       0 1071.9  32.8  312   22-334     5-320 (320)
  8 KOG2794 consensus              100.0       0       0  912.8  28.4  330    6-336     7-338 (340)
  9 PRK07028 bifunctional hexulose  97.3  0.0085 2.2E-07   40.1  11.5  173   64-326    12-191 (429)
 10 TIGR03551 F420_cofH 7,8-dideme  96.2   0.024 6.2E-07   37.0   6.9  221   57-320    62-314 (343)
 11 PRK07360 FO synthase subunit 2  95.5   0.053 1.4E-06   34.7   6.5  221   57-321    83-341 (375)
 12 PRK12331 oxaloacetate decarbox  95.4    0.14 3.6E-06   31.9   8.3  233   59-328    87-345 (463)
 13 COG5016 Pyruvate/oxaloacetate   95.4    0.17 4.4E-06   31.3   8.5  215   59-320    89-333 (472)
 14 PRK08445 hypothetical protein;  95.3    0.06 1.5E-06   34.4   6.1  220   57-335    65-329 (348)
 15 COG1060 ThiH Thiamine biosynth  95.3    0.11 2.8E-06   32.7   7.4  227   60-336    85-348 (370)
 16 PRK08508 biotin synthase; Prov  95.1    0.23 5.9E-06   30.4   8.5  102   62-196    36-152 (279)
 17 PRK12999 pyruvate carboxylase;  95.0    0.18 4.6E-06   31.2   7.8  224   59-316   619-867 (1147)
 18 PRK11320 prpB 2-methylisocitra  95.0    0.12 3.1E-06   32.3   6.9  164  110-320    66-258 (292)
 19 PRK07094 biotin synthase; Prov  94.9     0.4   1E-05   28.8  10.3  101   60-196    65-180 (323)
 20 PRK09282 pyruvate carboxylase   94.9    0.27   7E-06   29.9   8.4  230   59-327    88-342 (580)
 21 PRK12581 oxaloacetate decarbox  94.7    0.34 8.5E-06   29.3   8.4  227   59-328    96-354 (468)
 22 PRK08645 bifunctional homocyst  94.5    0.37 9.5E-06   29.0   8.4  228   57-322    31-268 (608)
 23 PRK08444 hypothetical protein;  94.4    0.23 5.9E-06   30.4   7.2  241   58-334    73-333 (353)
 24 PRK05927 hypothetical protein;  94.4    0.14 3.6E-06   31.9   6.0  205   57-320    68-317 (350)
 25 PRK09234 fbiC FO synthase; Rev  94.4    0.17 4.3E-06   31.4   6.3  104  198-324   537-648 (846)
 26 PRK12330 oxaloacetate decarbox  94.3    0.46 1.2E-05   28.4   8.4  259   17-326    56-343 (499)
 27 PRK09549 mtnW 2,3-diketo-5-met  94.2    0.35 8.9E-06   29.2   7.7  145  152-324   152-300 (411)
 28 pfam02548 Pantoate_transf Keto  94.2    0.59 1.5E-05   27.7  11.2   50  124-175   132-181 (261)
 29 TIGR00423 TIGR00423 conserved   94.2    0.09 2.3E-06   33.2   4.6  146   60-217    31-231 (331)
 30 PRK13307 bifunctional formalde  93.9    0.12 3.1E-06   32.3   4.9  138  111-325   214-358 (392)
 31 TIGR03332 salvage_mtnW 2,3-dik  93.8    0.53 1.4E-05   28.0   8.0  144  152-323   151-298 (407)
 32 PRK06256 biotin synthase; Vali  93.7    0.72 1.8E-05   27.1   9.5  103   59-195    81-200 (325)
 33 PRK00311 panB 3-methyl-2-oxobu  93.3    0.83 2.1E-05   26.7   8.7  101   54-175    80-182 (266)
 34 PRK08645 bifunctional homocyst  93.3    0.84 2.2E-05   26.6  17.0  227   43-323   100-358 (608)
 35 cd06557 KPHMT-like Ketopantoat  93.3    0.85 2.2E-05   26.6   9.5  123  123-253   127-251 (254)
 36 pfam00478 IMPDH IMP dehydrogen  93.1     0.9 2.3E-05   26.4   9.7   96   69-202   223-331 (467)
 37 cd00377 ICL_PEPM Members of th  93.0    0.87 2.2E-05   26.5   8.0   83  177-287   124-206 (243)
 38 cd00377 ICL_PEPM Members of th  92.9    0.96 2.4E-05   26.3  10.5  137   24-201    59-200 (243)
 39 TIGR03326 rubisco_III ribulose  92.5     1.1 2.8E-05   25.9   8.3  145  153-325   157-305 (412)
 40 PRK05926 hypothetical protein;  92.3    0.49 1.3E-05   28.2   6.0   59   57-126    92-150 (371)
 41 TIGR01108 oadA oxaloacetate de  91.7     1.3 3.4E-05   25.2   8.7  213   59-308    82-319 (616)
 42 pfam05853 DUF849 Prokaryotic p  91.3     1.5 3.7E-05   25.0   8.1   78   44-128     2-80  (274)
 43 COG0269 SgbH 3-hexulose-6-phos  91.3     0.6 1.5E-05   27.7   5.5  168   64-325    12-192 (217)
 44 cd04729 NanE N-acetylmannosami  91.3       1 2.6E-05   26.1   6.7  172   57-325    16-206 (219)
 45 PRK10200 putative racemase; Pr  91.3    0.86 2.2E-05   26.6   6.3   68  150-221    56-144 (230)
 46 TIGR01302 IMP_dehydrog inosine  91.0     1.3 3.3E-05   25.4   7.0   65   71-173   241-305 (476)
 47 PRK09240 thiH thiamine biosynt  91.0    0.76 1.9E-05   26.9   5.8  221   62-323   101-361 (371)
 48 pfam00682 HMGL-like HMGL-like.  90.6     1.3 3.2E-05   25.4   6.6  199   59-324     6-212 (237)
 49 KOG0369 consensus               90.6     1.3 3.3E-05   25.4   6.7  174   60-274   710-916 (1176)
 50 TIGR01108 oadA oxaloacetate de  90.4     1.2 3.1E-05   25.6   6.4   99   65-196   147-252 (616)
 51 PRK13305 sgbH 3-keto-L-gulonat  90.2    0.74 1.9E-05   27.0   5.1  168   63-325    11-191 (220)
 52 cd00381 IMPDH IMPDH: The catal  90.0     1.9 4.8E-05   24.2   7.9   39  110-173   122-160 (325)
 53 PRK07534 methionine synthase I  90.0     1.9 4.9E-05   24.2  10.1  220   68-322    45-275 (335)
 54 TIGR00677 fadh2_euk methylenet  89.8       2   5E-05   24.1   7.4  104   63-175    75-192 (312)
 55 COG0646 MetH Methionine syntha  89.2    0.97 2.5E-05   26.2   5.1  186  116-322     7-224 (311)
 56 cd02803 OYE_like_FMN_family Ol  88.9     2.3 5.8E-05   23.7  13.4   41  262-302   266-306 (327)
 57 PRK03620 5-dehydro-4-deoxygluc  88.7     1.5 3.7E-05   25.0   5.7  112   61-204    15-133 (296)
 58 pfam00016 RuBisCO_large Ribulo  88.4     2.5 6.3E-05   23.5   7.9  143  153-324    27-175 (309)
 59 COG1038 PycA Pyruvate carboxyl  87.2     2.9 7.4E-05   23.0   7.9  107   61-191   623-737 (1149)
 60 TIGR03249 KdgD 5-dehydro-4-deo  87.2     1.8 4.6E-05   24.4   5.5  156   59-277    17-179 (296)
 61 PRK03170 dihydrodipicolinate s  85.9     2.8 7.2E-05   23.1   5.9  163   63-285    17-186 (292)
 62 PRK13306 ulaD 3-keto-L-gulonat  85.7    0.87 2.2E-05   26.5   3.2   79   64-179    12-90  (216)
 63 cd02931 ER_like_FMN Enoate red  85.2     3.6 9.3E-05   22.3   9.7  108   69-177   151-273 (382)
 64 TIGR03128 RuMP_HxlA 3-hexulose  85.0     1.7 4.4E-05   24.5   4.4   87   64-187     8-99  (206)
 65 PRK01362 putative translaldola  84.9     3.7 9.5E-05   22.3   9.1   94   65-202    61-162 (214)
 66 PRK09275 aspartate aminotransf  84.9     1.7 4.4E-05   24.5   4.4   62   71-139   235-309 (531)
 67 PRK12655 fructose-6-phosphate   84.3     1.6   4E-05   24.8   4.0   49  154-203   109-165 (220)
 68 PRK12656 fructose-6-phosphate   84.0     1.9 4.8E-05   24.3   4.3   45  158-203   115-167 (222)
 69 PRK04147 N-acetylneuraminate l  84.0     3.4 8.7E-05   22.5   5.6  114   63-207    19-140 (294)
 70 cd02930 DCR_FMN 2,4-dienoyl-Co  83.9     4.1 0.00011   22.0  13.6   92   71-176   140-244 (353)
 71 cd02932 OYE_YqiM_FMN Old yello  82.6     4.6 0.00012   21.6   8.5   40  264-303   277-316 (336)
 72 cd06556 ICL_KPHMT Members of t  82.4     4.7 0.00012   21.6   8.7   38  242-281   158-195 (240)
 73 pfam00701 DHDPS Dihydrodipicol  81.9     4.4 0.00011   21.8   5.5  112   63-205    17-135 (289)
 74 cd00945 Aldolase_Class_I Class  81.6       5 0.00013   21.4  14.1  174   66-324    11-200 (201)
 75 PRK01060 endonuclease IV; Prov  81.6       5 0.00013   21.4   5.9  209   25-279    51-280 (281)
 76 TIGR02351 thiH thiazole biosyn  81.3     4.4 0.00011   21.8   5.3   74   63-145   103-181 (378)
 77 PRK12653 fructose-6-phosphate   79.7     2.6 6.6E-05   23.3   3.7   90  107-203    66-165 (220)
 78 PRK06954 acetyl-CoA acetyltran  79.0    0.27 6.8E-06   30.0  -1.5  139   61-210   175-327 (397)
 79 pfam02574 S-methyl_trans Homoc  78.6     6.2 0.00016   20.8  14.9  229   67-322    37-283 (303)
 80 cd04734 OYE_like_3_FMN Old yel  78.3     6.4 0.00016   20.7  14.1   44  261-304   269-312 (343)
 81 COG0685 MetF 5,10-methylenetet  78.3     6.4 0.00016   20.7   9.6  128   52-199    77-205 (291)
 82 PRK07807 inositol-5-monophosph  78.0     6.5 0.00017   20.6   6.8   36  250-285   236-276 (479)
 83 COG0176 MipB Transaldolase [Ca  77.4     4.2 0.00011   21.9   4.2  103  103-210    72-185 (239)
 84 COG1850 RbcL Ribulose 1,5-bisp  77.3     6.8 0.00017   20.5   6.9  104  151-282   166-279 (429)
 85 pfam01208 URO-D Uroporphyrinog  77.3     5.3 0.00013   21.2   4.7  178  108-324   119-313 (337)
 86 cd04723 HisA_HisF Phosphoribos  76.6     7.1 0.00018   20.4   6.6   43  263-324   175-217 (233)
 87 TIGR00875 talC transaldolase,   76.4     4.2 0.00011   21.9   4.0  160   44-237    19-190 (216)
 88 KOG2335 consensus               75.9       6 0.00015   20.9   4.7  191   25-264    33-243 (358)
 89 TIGR01182 eda 2-dehydro-3-deox  75.4     1.9 4.7E-05   24.3   2.0  111   66-218    18-150 (205)
 90 cd00952 CHBPH_aldolase Trans-o  75.2     7.7  0.0002   20.1   6.3  112   64-205    25-143 (309)
 91 PRK07491 consensus              74.7    0.25 6.3E-06   30.2  -2.7  142   61-210   169-322 (392)
 92 smart00518 AP2Ec AP endonuclea  74.4     5.9 0.00015   20.9   4.3  186   43-263    60-259 (273)
 93 cd00950 DHDPS Dihydrodipicolin  74.4     8.1 0.00021   20.0   5.8  166   63-288    16-188 (284)
 94 PRK04208 rbcL ribulose bisopho  74.3     8.1 0.00021   20.0   8.4  136  153-324   172-320 (467)
 95 KOG3111 consensus               73.8       4  0.0001   22.1   3.3  148  153-324    14-196 (224)
 96 pfam01487 DHquinase_I Type I 3  73.5     8.5 0.00022   19.9   8.1  176   66-296     8-193 (222)
 97 pfam00923 Transaldolase Transa  73.1     5.1 0.00013   21.3   3.7   67  104-175    85-154 (244)
 98 KOG0564 consensus               73.0     8.7 0.00022   19.8   6.6  204   63-304    87-302 (590)
 99 cd00951 KDGDH 5-dehydro-4-deox  72.9     8.7 0.00022   19.8   5.6  117   56-204     9-132 (289)
100 PRK00115 hemE uroporphyrinogen  72.9     6.7 0.00017   20.5   4.3   74  107-181   121-212 (347)
101 PRK01130 N-acetylmannosamine-6  72.4     8.9 0.00023   19.7   8.2  169   58-324    13-202 (222)
102 PRK02412 aroD 3-dehydroquinate  72.2     9.1 0.00023   19.7   9.3  178   65-295    25-217 (253)
103 cd01846 fatty_acyltransferase_  72.0     9.1 0.00023   19.6   6.4   31   66-97    129-159 (270)
104 COG2513 PrpB PEP phosphonomuta  71.8     9.3 0.00024   19.6   9.8  107   67-194    92-202 (289)
105 KOG1579 consensus               71.7     6.9 0.00018   20.5   4.1  220   68-322    53-294 (317)
106 pfam04309 G3P_antiterm Glycero  71.6     9.3 0.00024   19.6   7.9   54  252-325   115-168 (174)
107 TIGR01832 kduD 2-deoxy-D-gluco  71.4     2.4 6.2E-05   23.5   1.8   26  160-185    20-47  (249)
108 COG3543 Uncharacterized conser  71.3     3.6 9.3E-05   22.3   2.6   40  113-155    32-75  (135)
109 PRK05692 hydroxymethylglutaryl  70.9     9.6 0.00025   19.5   6.1   27   60-87     19-45  (287)
110 cd00452 KDPG_aldolase KDPG and  70.9     5.5 0.00014   21.1   3.5  130   63-276    11-141 (190)
111 pfam05582 Peptidase_U57 YabG p  70.1      10 0.00026   19.3   5.8   73   49-147    94-170 (287)
112 COG2040 MHT1 Homocysteine/sele  70.0     4.8 0.00012   21.5   3.0  245   42-323     8-279 (300)
113 cd00956 Transaldolase_FSA Tran  69.1      10 0.00025   19.4   4.5   93   66-202    62-162 (211)
114 TIGR01035 hemA glutamyl-tRNA r  68.9     2.6 6.6E-05   23.3   1.5   39   39-78    282-324 (436)
115 PRK06843 inositol-5-monophosph  68.3      11 0.00028   19.1   7.4   44  159-202   205-261 (404)
116 pfam06838 Alum_res Aluminium r  68.0     5.4 0.00014   21.1   3.0   30  109-138   177-206 (405)
117 PRK00366 ispG 4-hydroxy-3-meth  67.8      11 0.00029   19.0   7.3  102   47-165    21-128 (367)
118 PRK05458 guanosine 5'-monophos  67.7      11 0.00029   19.0   4.7   51   33-83     29-87  (326)
119 cd00408 DHDPS-like Dihydrodipi  67.6      11 0.00029   19.0   5.8  166   64-289    14-186 (281)
120 TIGR01818 ntrC nitrogen regula  67.6      11 0.00029   19.0   4.7   87  232-320    23-117 (471)
121 pfam04131 NanE Putative N-acet  67.5     3.7 9.6E-05   22.2   2.0   66  235-324    98-172 (192)
122 PRK08904 consensus              67.3     8.3 0.00021   19.9   3.8  127   65-276    19-148 (207)
123 PRK13209 L-xylulose 5-phosphat  67.3     5.9 0.00015   20.9   3.0   71   14-90     46-121 (283)
124 PRK02615 thiamine-phosphate py  67.2      11 0.00029   19.0   5.0   58  247-324   252-319 (345)
125 cd00717 URO-D Uroporphyrinogen  67.2      11 0.00029   19.0   5.0   76  105-181   109-202 (335)
126 pfam01081 Aldolase KDPG and KH  67.1      11 0.00027   19.2   4.3  136   60-280    12-151 (196)
127 PRK13398 3-deoxy-7-phosphohept  66.9      12  0.0003   18.9   5.6   74   44-134    28-102 (266)
128 PRK06512 thiamine-phosphate py  66.8      12  0.0003   18.9   6.7  169   52-324     5-191 (221)
129 pfam04551 GcpE GcpE protein. I  66.6      12  0.0003   18.9   8.2  100   47-163    10-115 (345)
130 pfam01076 Mob_Pre Plasmid reco  66.0      12 0.00031   18.8   5.7   39  107-145   101-140 (196)
131 pfam03437 BtpA BtpA family. Th  64.5      13 0.00033   18.6  14.7  173   55-283    10-206 (254)
132 PRK09485 mmuM homocysteine met  64.5      13 0.00033   18.6  14.2  223   67-322    45-289 (308)
133 TIGR02855 spore_yabG sporulati  64.4     6.3 0.00016   20.7   2.7   80   47-152    99-183 (292)
134 PRK08041 consensus              64.4    0.63 1.6E-05   27.5  -2.4  143   60-208   168-320 (391)
135 PRK07188 nicotinate phosphorib  64.3     5.4 0.00014   21.2   2.3   21  182-202   271-291 (355)
136 cd00954 NAL N-Acetylneuraminic  63.6      13 0.00034   18.5   6.3  111   64-204    17-135 (288)
137 PRK06857 consensus              63.4      11 0.00029   19.0   3.9  136   60-280    16-155 (209)
138 PRK08104 consensus              63.0      11 0.00029   19.0   3.8  132   65-280    24-158 (212)
139 PRK07455 keto-hydroxyglutarate  62.8      10 0.00026   19.3   3.5  135   62-281    19-157 (210)
140 PRK05283 deoxyribose-phosphate  62.7      14 0.00035   18.4   7.7  137   14-178    17-170 (258)
141 TIGR01163 rpe ribulose-phospha  62.1     7.6 0.00019   20.2   2.8  144  154-324    10-196 (216)
142 PRK06015 keto-hydroxyglutarate  61.8      10 0.00026   19.4   3.4  131   66-281    25-159 (212)
143 cd04733 OYE_like_2_FMN Old yel  61.8      14 0.00037   18.3  15.4   42  263-304   278-319 (338)
144 TIGR02841 spore_YyaC putative   61.7      14 0.00037   18.3   4.9   57   75-141    24-81  (140)
145 COG0329 DapA Dihydrodipicolina  61.4      15 0.00037   18.2   6.0  163   64-286    21-191 (299)
146 PTZ00314 inosine-5'-monophosph  61.2      15 0.00038   18.2   7.5   14  160-173   291-304 (499)
147 PRK05718 keto-hydroxyglutarate  60.8      14 0.00035   18.4   3.9  130   66-280    25-158 (212)
148 TIGR00566 trpG_papA glutamine   60.8     4.1  0.0001   22.0   1.2   81   71-188    42-127 (212)
149 PRK08782 consensus              60.7      13 0.00033   18.6   3.8   71   65-176    26-97  (219)
150 cd01837 SGNH_plant_lipase_like  60.5      15 0.00039   18.2   6.2   22   67-88    163-184 (315)
151 cd03328 MR_like_3 Mandelate ra  60.2      15 0.00039   18.1   7.9  130   60-204   132-293 (352)
152 cd03465 URO-D_like The URO-D _  60.2      15 0.00039   18.1   6.9  181  109-324   110-307 (330)
153 pfam01188 MR_MLE Mandelate rac  60.2      15 0.00039   18.1   5.6   50   68-130     2-52  (98)
154 cd06563 GH20_chitobiase-like T  59.2      16 0.00041   18.0   7.1  129   44-197    37-198 (357)
155 pfam01261 AP_endonuc_2 Xylose   59.2      11 0.00027   19.2   3.1   89   24-126    29-117 (201)
156 TIGR02104 pulA_typeI pullulana  59.0      16 0.00041   18.0   4.4   62   70-132   184-271 (655)
157 PRK05567 inositol-5'-monophosp  58.9      16 0.00041   18.0  11.8   19  110-128   256-274 (486)
158 PRK09140 2-dehydro-3-deoxy-6-p  58.7      15 0.00037   18.3   3.7   74   62-176    16-91  (206)
159 pfam00977 His_biosynth Histidi  58.6      16 0.00041   17.9   7.3  184   68-324    29-219 (229)
160 pfam01177 Asp_Glu_race Asp/Glu  57.6      17 0.00043   17.8  12.3   99  182-281    93-201 (212)
161 PRK12344 putative alpha-isopro  57.5      17 0.00043   17.8  13.7   51   62-123   152-202 (530)
162 PRK13210 putative L-xylulose 5  57.5      17 0.00043   17.8   4.9  116   69-198    17-147 (284)
163 TIGR01928 menC_lowGC/arch o-su  56.8      17 0.00044   17.7   5.3   56   65-137   133-188 (326)
164 PRK08662 nicotinate phosphorib  56.7     8.2 0.00021   19.9   2.2   25  178-202   242-266 (343)
165 cd03322 rpsA The starvation se  56.3      18 0.00045   17.7   5.2   77   39-137    99-176 (361)
166 TIGR01496 DHPS dihydropteroate  56.2      13 0.00034   18.6   3.2  109   42-173   126-250 (268)
167 PRK06845 consensus              55.7    0.79   2E-05   26.8  -3.1   71   23-93     31-118 (392)
168 cd03327 MR_like_2 Mandelate ra  55.4      18 0.00047   17.6   7.1  191   40-297    93-291 (341)
169 PRK07114 keto-hydroxyglutarate  55.1      17 0.00043   17.8   3.6   75   65-176    25-100 (223)
170 cd04732 HisA HisA.  Phosphorib  54.9      19 0.00048   17.5   6.7   57  248-323   154-217 (234)
171 TIGR03550 F420_cofG 7,8-dideme  54.4      19 0.00048   17.5   7.4   39   57-95     27-65  (322)
172 cd03411 Ferrochelatase_N Ferro  54.4      19 0.00048   17.5   4.4   58   63-127    94-153 (159)
173 KOG0133 consensus               54.0      13 0.00033   18.6   2.9   70    9-86      6-77  (531)
174 cd00003 PNPsynthase Pyridoxine  53.9      19 0.00048   17.5   3.7  139   41-213    82-222 (234)
175 KOG2804 consensus               53.9      11 0.00029   19.0   2.5   28  110-137    79-106 (348)
176 TIGR03234 OH-pyruv-isom hydrox  53.3      20  0.0005   17.4   3.7   20   69-88     15-34  (254)
177 cd03319 L-Ala-DL-Glu_epimerase  53.2      20  0.0005   17.4   5.0   53  252-305   250-312 (316)
178 PRK06690 acetyl-CoA acetyltran  53.2     1.3 3.3E-05   25.4  -2.4  137   56-210   140-290 (361)
179 TIGR00459 aspS_bact aspartyl-t  53.0     7.6 0.00019   20.2   1.5   22  183-204   158-181 (653)
180 PRK06552 keto-hydroxyglutarate  52.6      18 0.00046   17.6   3.4   71   64-175    21-95  (209)
181 cd02933 OYE_like_FMN Old yello  52.6      20 0.00052   17.3  10.1  166   68-276   152-331 (338)
182 cd00957 Transaldolase_TalAB Tr  52.2      21 0.00052   17.3   3.9  148  100-276    97-254 (313)
183 PRK09958 DNA-binding transcrip  51.8      12 0.00032   18.7   2.5   29  166-194    92-121 (204)
184 TIGR01769 GGGP geranylgeranylg  51.1      11 0.00029   19.0   2.1  123   61-189    37-180 (212)
185 TIGR00737 nifR3_yhdG putative   50.6      22 0.00055   17.1   6.1   88  223-331   145-248 (336)
186 PRK08255 salicylyl-CoA 5-hydro  50.6      22 0.00055   17.1   9.0   94   70-177   558-664 (770)
187 KOG2648 consensus               50.2      22 0.00056   17.0   4.2  139   48-206    19-186 (453)
188 PRK05826 pyruvate kinase; Prov  49.5      23 0.00058   17.0   4.0   39  165-203   182-221 (461)
189 COG2877 KdsA 3-deoxy-D-manno-o  49.1      23 0.00058   16.9   8.9  133   42-199    16-163 (279)
190 cd03321 mandelate_racemase Man  48.7      23 0.00059   16.9   6.3   63   55-130   130-193 (355)
191 cd03329 MR_like_4 Mandelate ra  48.4      23  0.0006   16.9   5.8   79   39-130   110-196 (368)
192 cd01571 NAPRTase_B Nicotinate   48.4      14 0.00036   18.3   2.3   19  183-201   231-249 (302)
193 PRK10403 transcriptional regul  48.2      24  0.0006   16.8   7.8   31  166-196    99-130 (215)
194 pfam02219 MTHFR Methylenetetra  48.2      24  0.0006   16.8   8.8  126   54-195    71-198 (286)
195 PRK06259 succinate dehydrogena  48.0      24 0.00061   16.8   4.4   21  305-325   438-458 (491)
196 COG5561 Predicted metal-bindin  47.9      20 0.00051   17.3   3.0   37  245-281    48-94  (101)
197 PRK06445 acetyl-CoA acetyltran  47.8     2.9 7.4E-05   23.0  -1.3   23  173-195   285-307 (394)
198 TIGR01125 TIGR01125 MiaB-like   47.5      24 0.00062   16.8   4.0   58   43-104   167-228 (475)
199 pfam09370 TIM-br_sig_trns TIM-  47.5      15 0.00038   18.2   2.3   77   72-176    99-177 (268)
200 TIGR00651 pta phosphate acetyl  47.3     5.5 0.00014   21.1   0.1   82  109-209   118-208 (322)
201 PRK00043 thiE thiamine-phospha  47.2      24 0.00062   16.7   7.8  163   57-323     4-184 (210)
202 PRK05265 pyridoxine 5'-phospha  46.8      25 0.00063   16.7   3.8  139   41-213    85-225 (240)
203 KOG3020 consensus               45.8     9.6 0.00024   19.5   1.1   18   72-89     36-53  (296)
204 pfam06506 PrpR_N Propionate ca  45.2      26 0.00067   16.5   5.6   56  232-294   102-157 (169)
205 PRK07107 inositol-5-monophosph  45.1      26 0.00067   16.5   5.8   39  247-285   248-292 (497)
206 PRK13397 3-deoxy-7-phosphohept  45.1      26 0.00067   16.5   6.5   73   44-133    16-89  (250)
207 PRK08234 consensus              45.0      26 0.00067   16.5   4.9  135   61-210   176-329 (400)
208 pfam00128 Alpha-amylase Alpha   44.8      27 0.00068   16.5   6.4   62   67-132     3-74  (314)
209 cd02067 B12-binding B12 bindin  44.6      27 0.00068   16.5   3.8   51  151-204    35-88  (119)
210 cd03307 Mta_CmuA_like MtaA_Cmu  44.4      27 0.00069   16.5   9.6   73  108-181   112-196 (326)
211 PRK11361 acetoacetate metaboli  44.4      27 0.00069   16.5   4.1   10  114-123    67-76  (457)
212 PRK09490 metH B12-dependent me  44.3      27 0.00069   16.5   6.1  172  151-326   288-489 (1229)
213 TIGR03649 ergot_EASG ergot alk  43.9      27  0.0007   16.4   9.9  121  204-325   135-261 (285)
214 COG0821 gcpE 1-hydroxy-2-methy  43.8      27  0.0007   16.4   8.2   71   46-133    14-84  (361)
215 PRK09350 lysyl-tRNA synthetase  43.6     8.3 0.00021   19.9   0.5   24   73-99     80-103 (325)
216 PRK07661 acetyl-CoA acetyltran  43.4     6.4 0.00016   20.7  -0.1   44  164-210   269-314 (384)
217 COG3010 NanE Putative N-acetyl  43.0      18 0.00047   17.6   2.2  197   55-335    20-223 (229)
218 cd06406 PB1_P67 A PB1 domain i  42.9      22 0.00056   17.1   2.6   29  257-285    15-43  (80)
219 COG3366 Uncharacterized protei  42.5      19 0.00049   17.5   2.2   25  284-308   231-255 (311)
220 PRK07025 consensus              42.3     3.4 8.6E-05   22.6  -1.7   29  164-195   278-306 (393)
221 PRK07850 acetyl-CoA acetyltran  41.9     7.5 0.00019   20.2   0.1   44  163-209   271-316 (387)
222 PHA00452 T3/T7-like RNA polyme  41.8      29 0.00075   16.2   3.5  199   64-272   300-551 (816)
223 COG1523 PulA Type II secretory  41.7      29 0.00075   16.2   3.9   90   40-134   173-289 (697)
224 cd04726 KGPDC_HPS 3-Keto-L-gul  41.5      30 0.00076   16.2   6.5   75   64-175     9-83  (202)
225 PRK02048 4-hydroxy-3-methylbut  41.5      30 0.00076   16.2   6.1   71   48-134    21-95  (613)
226 pfam12010 DUF3502 Domain of un  41.5      18 0.00045   17.7   1.9   51  284-337    89-139 (140)
227 COG2048 HdrB Heterodisulfide r  41.4      29 0.00073   16.3   3.0   20  305-324   209-228 (293)
228 COG1578 Uncharacterized conser  41.3      27  0.0007   16.4   2.9   81   65-174   120-208 (285)
229 PRK09268 acetyl-CoA acetyltran  41.1      25 0.00063   16.7   2.6  134   61-209   190-341 (428)
230 cd01568 QPRTase_NadC Quinolina  41.1      30 0.00077   16.1   6.6   94  210-326   162-256 (269)
231 PRK13435 response regulator; P  41.0      22 0.00057   17.0   2.4   60  237-302    33-96  (141)
232 PRK09052 acetyl-CoA acetyltran  41.0     7.4 0.00019   20.3  -0.1   43  165-210   285-329 (399)
233 pfam02679 ComA (2R)-phospho-3-  40.9      30 0.00077   16.1   7.5  149   94-286    41-206 (245)
234 PRK09390 fixJ response regulat  40.5      31 0.00078   16.1   4.1   11  113-123    65-75  (202)
235 PRK06205 acetyl-CoA acetyltran  40.5     9.5 0.00024   19.5   0.4  136   61-210   173-330 (404)
236 COG1794 RacX Aspartate racemas  40.2      31 0.00079   16.0   3.6   64  150-213    56-135 (230)
237 PRK08170 acetyl-CoA acetyltran  40.0       3 7.5E-05   22.9  -2.2  144   60-210   188-339 (426)
238 cd03316 MR_like Mandelate race  39.7      32 0.00081   16.0   6.8   81   42-130   113-196 (357)
239 PRK09441 cytoplasmic alpha-amy  39.6      32 0.00081   16.0   6.3   23   67-89     21-43  (482)
240 TIGR00620 sporelyase spore pho  39.2      32 0.00082   15.9   3.0   66   32-124    82-147 (199)
241 cd03325 D-galactonate_dehydrat  38.6      33 0.00084   15.9   3.8   87   40-131    97-184 (352)
242 COG0800 Eda 2-keto-3-deoxy-6-p  38.5      19 0.00049   17.4   1.7   74   62-176    19-93  (211)
243 PRK05656 acetyl-CoA acetyltran  38.4       2 5.2E-05   24.0  -3.3   43  164-209   278-322 (392)
244 PRK09613 thiH thiamine biosynt  38.1      33 0.00085   15.8   6.0   86   63-157   113-208 (471)
245 PRK08235 acetyl-CoA acetyltran  37.2     3.7 9.5E-05   22.3  -2.1   38  163-203   277-316 (393)
246 pfam10996 Beta-Casp Beta-Casp   37.2      26 0.00066   16.6   2.2   38  167-206    77-117 (124)
247 cd04739 DHOD_like Dihydroorota  37.1      35 0.00088   15.7   5.0   89   64-177   108-196 (325)
248 cd06437 CESA_CaSu_A2 Cellulose  37.0      35 0.00088   15.7   8.2   77  103-196     9-89  (232)
249 TIGR01930 AcCoA-C-Actrans acet  36.8      13 0.00033   18.6   0.6  135   49-196   180-344 (447)
250 TIGR01513 NAPRTase_put putativ  36.7      21 0.00054   17.1   1.7   47  155-201   264-320 (523)
251 PRK03991 threonyl-tRNA synthet  36.7      35  0.0009   15.7   3.4   12   79-90     69-80  (613)
252 pfam08029 HisG_C HisG, C-termi  36.7      35  0.0009   15.7   3.0   23  303-325    46-68  (73)
253 PRK06504 acetyl-CoA acetyltran  36.6      13 0.00033   18.6   0.6   43  164-209   275-319 (390)
254 pfam03060 NPD 2-nitropropane d  36.4      35 0.00091   15.6   5.1  103   68-184   101-207 (330)
255 KOG0478 consensus               36.2      25 0.00063   16.7   2.0  113   54-170   411-562 (804)
256 PRK10840 transcriptional regul  36.2      36 0.00091   15.6   7.0   58  112-193    69-127 (216)
257 PRK06245 cofG FO synthase subu  36.0      36 0.00092   15.6   4.6  231   62-314    38-327 (336)
258 PRK01033 imidazole glycerol ph  35.9      36 0.00092   15.6   5.3  179   67-323    29-224 (253)
259 PRK10365 transcriptional regul  35.8      36 0.00092   15.6   3.7   12  113-124    67-78  (441)
260 pfam09043 Lys-AminoMut_A D-Lys  35.8      29 0.00075   16.2   2.3   27  143-175   152-178 (509)
261 PTZ00126 tyrosyl-tRNA syntheta  35.7      36 0.00093   15.6   2.9  122  178-315   233-372 (399)
262 PRK06025 acetyl-CoA acetyltran  35.6     7.8  0.0002   20.1  -0.6   44  163-209   301-346 (417)
263 PRK07108 acetyl-CoA acetyltran  35.5     8.6 0.00022   19.8  -0.4   45  163-210   276-322 (392)
264 cd00739 DHPS DHPS subgroup of   35.4      37 0.00094   15.5   8.4  220   61-335    17-254 (257)
265 TIGR01768 GGGP-family geranylg  35.4      26 0.00068   16.5   2.0  161   61-259    35-223 (242)
266 TIGR02127 pyrF_sub2 orotidine   35.3      37 0.00094   15.5   4.2  212   56-294    24-274 (306)
267 cd00751 thiolase Thiolase are   35.3     5.5 0.00014   21.1  -1.5   69   24-92     28-112 (386)
268 TIGR00128 fabD malonyl CoA-acy  35.1      23 0.00058   16.9   1.7   27  278-307    85-112 (295)
269 pfam04476 DUF556 Protein of un  35.0      37 0.00095   15.5   5.9   41   71-123    10-51  (235)
270 pfam02979 NHase_alpha Nitrile   34.9      21 0.00054   17.1   1.5   80  180-260     7-86  (189)
271 pfam09447 Cnl2_NKP2 Cnl2/NKP2   34.8     9.4 0.00024   19.5  -0.3   30    5-34     18-47  (67)
272 PRK03705 glycogen debranching   34.8      38 0.00096   15.5   6.9   92   40-134   152-266 (658)
273 PRK09051 beta-ketothiolase; Pr  34.4       4  0.0001   22.0  -2.3   21  175-195   287-307 (394)
274 PRK13359 beta-ketoadipyl CoA t  34.4     7.6 0.00019   20.2  -0.9  138   59-210   173-328 (400)
275 cd06346 PBP1_ABC_ligand_bindin  34.2      38 0.00098   15.4   5.5   31  166-197   189-219 (312)
276 PRK02610 histidinol-phosphate   34.2      38 0.00098   15.4   5.4  107   56-178   140-249 (369)
277 TIGR01064 pyruv_kin pyruvate k  34.0      39 0.00099   15.4   3.8   37  166-202   205-242 (513)
278 TIGR01037 pyrD_sub1_fam dihydr  33.9      39 0.00099   15.4   5.0   79   94-203   133-213 (308)
279 COG3581 Uncharacterized protei  33.9      37 0.00093   15.6   2.6   37  183-219    90-135 (420)
280 PRK05211 consensus              33.8      39 0.00099   15.4   5.2  201   67-336    20-241 (248)
281 PRK10651 transcriptional regul  33.8      39 0.00099   15.4   4.7   77  112-195    43-129 (216)
282 COG0138 PurH AICAR transformyl  33.6      16  0.0004   18.1   0.6  192   67-283    77-303 (515)
283 PRK00035 hemH ferrochelatase;   33.6      31 0.00079   16.0   2.1   39   63-101    99-137 (325)
284 KOG3670 consensus               33.3      27  0.0007   16.4   1.8   70   59-128   162-237 (397)
285 CHL00040 rbcL ribulose-1,5-bis  33.3      40   0.001   15.3   8.2  146  152-325   179-329 (477)
286 PRK09856 fructoselysine 3-epim  33.0      40   0.001   15.3   8.2  217   61-325     9-246 (276)
287 PRK11572 copper homeostasis pr  32.9      40   0.001   15.3   4.1  126   42-198    52-195 (248)
288 PRK09989 hypothetical protein;  32.8      40   0.001   15.3   4.3   18   70-87     17-34  (258)
289 pfam03932 CutC CutC family. Co  32.5      41   0.001   15.2   4.3  126   42-195    51-193 (202)
290 PRK07124 consensus              32.4     6.1 0.00016   20.8  -1.6   69   24-93     32-117 (402)
291 cd00423 Pterin_binding Pterin   32.0      42  0.0011   15.2   9.7  221   61-335    17-255 (258)
292 PRK06633 acetyl-CoA acetyltran  32.0     2.4 6.1E-05   23.5  -3.7   44  163-209   276-321 (392)
293 pfam09505 Dimeth_Pyl Dimethyla  31.7      13 0.00034   18.5  -0.0  138   28-175   129-285 (466)
294 TIGR02510 NrdE-prime ribonucle  31.5      31 0.00078   16.1   1.8   69  201-273     1-69  (560)
295 TIGR01463 mtaA_cmuA methyltran  31.5      42  0.0011   15.1   3.3   74  108-182   126-217 (350)
296 PRK00413 thrS threonyl-tRNA sy  31.4      23 0.00059   16.9   1.2  194   67-276   226-527 (639)
297 TIGR03571 lucif_BA3436 lucifer  31.3      43  0.0011   15.1   6.3  234   58-326    15-276 (298)
298 KOG4076 consensus               31.3      21 0.00053   17.2   0.9   39  256-300    41-79  (121)
299 cd04412 NDPk7B Nucleoside diph  31.0      34 0.00087   15.8   2.0   90  172-307     6-97  (134)
300 cd07577 Ph0642_like Pyrococcus  30.7      44  0.0011   15.0   2.8   19  160-178   148-167 (259)
301 TIGR01595 cas_CT1132 CRISPR-as  30.6      44  0.0011   15.0   3.6  170  122-315    34-225 (310)
302 cd06568 GH20_SpHex_like A subg  30.6      44  0.0011   15.0   8.0   45   44-88     37-95  (329)
303 COG5573 Predicted nucleic-acid  30.6      29 0.00074   16.2   1.6   24  161-184   105-128 (142)
304 PRK07695 transcriptional regul  30.5      44  0.0011   15.0   5.0   58  246-323   108-175 (202)
305 PRK11866 2-oxoacid ferredoxin   30.4      44  0.0011   15.0   3.8  179   54-247    13-238 (286)
306 cd00564 TMP_TenI Thiamine mono  30.4      44  0.0011   15.0   7.9   59  246-324   108-177 (196)
307 cd00953 KDG_aldolase KDG (2-ke  30.3      44  0.0011   15.0   5.7  167   64-291    16-186 (279)
308 cd02071 MM_CoA_mut_B12_BD meth  30.3      44  0.0011   15.0   5.0   48  152-202    36-86  (122)
309 pfam01791 DeoC DeoC/LacD famil  30.2      44  0.0011   15.0   8.2  194   66-330    17-228 (231)
310 PRK10537 voltage-gated potassi  30.0      39   0.001   15.3   2.2   19  308-326   303-321 (356)
311 pfam06110 DUF953 Eukaryotic pr  30.0      45  0.0011   15.0   6.6   67   65-138     3-74  (119)
312 PRK11858 aksA trans-homoaconit  29.7      45  0.0012   14.9   7.0   35  284-318   318-352 (378)
313 COG0276 HemH Protoheme ferro-l  29.7      45  0.0012   14.9   2.9   61   63-128    97-157 (320)
314 PRK06267 hypothetical protein;  29.6      45  0.0012   14.9   6.3  104   60-201    58-174 (324)
315 PRK00484 lysS lysyl-tRNA synth  29.6      11 0.00029   19.0  -0.7  147   77-267   100-273 (491)
316 cd06544 GH18_narbonin Narbonin  29.6      42  0.0011   15.2   2.2  183  100-318    47-240 (253)
317 KOG1885 consensus               29.0      32 0.00082   15.9   1.6   69  126-215   185-264 (560)
318 PRK02534 4-diphosphocytidyl-2-  28.9      31  0.0008   16.0   1.5   60  261-325   233-298 (308)
319 PRK12820 bifunctional aspartyl  28.9      31  0.0008   16.0   1.5   81  182-267   162-258 (706)
320 COG0173 AspS Aspartyl-tRNA syn  28.8      33 0.00083   15.9   1.6   23  183-205   148-172 (585)
321 COG1891 Uncharacterized protei  28.8      47  0.0012   14.8   5.2  182   72-325    11-208 (235)
322 KOG2775 consensus               28.6      47  0.0012   14.8   2.6  128   76-226   126-267 (397)
323 PRK02227 hypothetical protein;  28.4      48  0.0012   14.8   6.7   12   72-83     11-22  (239)
324 PRK11613 folP dihydropteroate   28.3      48  0.0012   14.8  10.1  213   65-334    35-266 (282)
325 pfam01129 ART NAD:arginine ADP  28.3      19 0.00048   17.5   0.3   36  197-237    66-101 (222)
326 cd06562 GH20_HexA_HexB-like Be  28.2      48  0.0012   14.8   7.2  214   23-268    17-256 (348)
327 cd01421 IMPCH Inosine monophos  28.0      32 0.00081   16.0   1.4   59  269-334   128-187 (187)
328 TIGR02783 TrbL_P P-type conjug  28.0      37 0.00095   15.5   1.8   58  153-210    88-155 (351)
329 pfam00933 Glyco_hydro_3 Glycos  27.9      30 0.00076   16.2   1.3   33   74-107    55-89  (225)
330 cd04735 OYE_like_4_FMN Old yel  27.9      49  0.0012   14.7   8.6   24  152-175   140-163 (353)
331 pfam07302 AroM AroM protein. T  27.8      49  0.0012   14.7   4.9   42  240-281   164-206 (221)
332 TIGR01362 KDO8P_synth 3-deoxy-  27.8      49  0.0012   14.7   5.4  117   42-179     1-134 (279)
333 pfam06850 PHB_depo_C PHB de-po  27.7      32 0.00083   15.9   1.4   37  256-292    93-129 (203)
334 pfam03740 PdxJ Pyridoxal phosp  27.6      49  0.0013   14.7   3.6   47   41-88     83-130 (239)
335 PRK00476 aspS aspartyl-tRNA sy  27.6     9.3 0.00024   19.6  -1.4   80  182-266   148-243 (587)
336 PTZ00196 60S ribosomal protein  27.6      39 0.00099   15.4   1.8   32    3-34     19-51  (104)
337 PRK07851 acetyl-CoA acetyltran  27.5       8  0.0002   20.0  -1.7  141   58-211   181-335 (405)
338 PRK10430 DNA-binding transcrip  27.2      50  0.0013   14.6   8.7   42  261-302    60-102 (239)
339 KOG1349 consensus               27.0      43  0.0011   15.1   2.0   50  185-236   170-223 (309)
340 pfam06418 CTP_synth_N CTP synt  26.9      51  0.0013   14.6   5.8  141  107-289    16-185 (275)
341 pfam02803 Thiolase_C Thiolase,  26.9      37 0.00095   15.5   1.6   45  165-212    10-56  (123)
342 cd00465 URO-D_CIMS_like The UR  26.7      51  0.0013   14.6   5.5  164   49-216    26-217 (306)
343 cd06408 PB1_NoxR The PB1 domai  26.6      51  0.0013   14.6   2.7   60  251-314    10-70  (86)
344 PRK09243 nicotinate phosphorib  26.5      51  0.0013   14.6   2.3   27  176-202   265-291 (466)
345 PRK06689 consensus              26.5     3.2 8.3E-05   22.7  -3.9  139   61-210   168-321 (391)
346 PRK08947 fadA 3-ketoacyl-CoA t  26.5     4.4 0.00011   21.8  -3.2   70   24-93     33-120 (387)
347 cd00777 AspRS_core Asp tRNA sy  26.4      42  0.0011   15.2   1.8   15   74-88     61-75  (280)
348 TIGR00303 TIGR00303 conserved   26.3      11 0.00027   19.2  -1.3   13  257-269    95-107 (350)
349 pfam01680 SOR_SNZ SOR/SNZ fami  26.2      33 0.00085   15.8   1.3   63  225-294   111-173 (209)
350 PRK08131 acetyl-CoA acetyltran  26.1      17 0.00043   17.8  -0.2   45  163-210   282-328 (401)
351 PRK06462 asparagine synthetase  26.0      43  0.0011   15.1   1.8   15   74-88     89-103 (332)
352 TIGR00343 TIGR00343 pyridoxine  26.0      42  0.0011   15.2   1.7  104  224-329   105-213 (298)
353 smart00642 Aamy Alpha-amylase   25.9      53  0.0013   14.5   7.4   76   59-137     3-97  (166)
354 COG0157 NadC Nicotinate-nucleo  25.9      53  0.0013   14.5   2.9  102  210-334   169-271 (280)
355 pfam12114 Period_C Period prot  25.8      33 0.00085   15.8   1.2   17  230-246   104-120 (190)
356 pfam01255 Prenyltransf Putativ  25.8      52  0.0013   14.5   2.2   56   64-123    21-76  (222)
357 TIGR00649 MG423 conserved hypo  25.8      40   0.001   15.3   1.6  125  104-297   298-429 (593)
358 PRK13759 arylsulfatase; Provis  25.7      36 0.00092   15.6   1.4   26  176-201   262-288 (474)
359 PTZ00292 ribokinase; Provision  25.6      53  0.0014   14.4   4.6   37  159-195    55-92  (328)
360 COG1190 LysU Lysyl-tRNA synthe  25.5      51  0.0013   14.6   2.1   66  129-215   143-219 (502)
361 PRK06366 acetyl-CoA acetyltran  25.4      48  0.0012   14.8   2.0   36  175-210   280-317 (388)
362 PRK00748 1-(5-phosphoribosyl)-  25.3      54  0.0014   14.4   7.6  183   69-323    30-219 (241)
363 cd00537 MTHFR Methylenetetrahy  25.3      54  0.0014   14.4  10.4  133   55-203    61-198 (274)
364 PRK08599 coproporphyrinogen II  25.0      55  0.0014   14.4   3.8   23  183-205   218-240 (377)
365 TIGR01949 AroFGH_arch predicte  24.8      55  0.0014   14.4   2.4  172   39-282    18-198 (259)
366 TIGR00735 hisF imidazoleglycer  24.7      55  0.0014   14.3   3.7   74  235-322    37-126 (312)
367 PRK05269 transaldolase B; Prov  24.7      55  0.0014   14.3   3.6  145   99-275    98-255 (320)
368 PRK12484 nicotinate phosphorib  24.5      56  0.0014   14.3   2.4   21  182-202   264-284 (443)
369 PRK06252 methylcobalamin:coenz  24.4      56  0.0014   14.3  11.7  178  108-324   121-311 (339)
370 cd06570 GH20_chitobiase-like_1  24.2      57  0.0014   14.3   7.9  203   42-280    35-262 (311)
371 TIGR02082 metH methionine synt  24.1      54  0.0014   14.4   2.0  222   54-326   227-482 (1265)
372 PRK08898 coproporphyrinogen II  24.0      57  0.0015   14.3   3.7   21  184-204   235-255 (393)
373 PRK09050 beta-ketoadipyl CoA t  23.9     4.1  0.0001   22.0  -3.8  136   61-210   175-329 (401)
374 COG3246 Uncharacterized conser  23.7      58  0.0015   14.2   7.9   80   42-128     3-82  (298)
375 TIGR01830 3oxo_ACP_reduc 3-oxo  23.7      58  0.0015   14.2   3.8   52   63-128    29-80  (238)
376 TIGR03455 HisG_C-term ATP phos  23.7      58  0.0015   14.2   3.0   53  263-326    38-95  (100)
377 PRK10499 N,N'-diacetylchitobio  23.6      58  0.0015   14.2   7.5   60  249-320    46-106 (106)
378 PRK00694 4-hydroxy-3-methylbut  23.5      58  0.0015   14.2   6.2   70   49-134    26-99  (606)
379 pfam01729 QRPTase_C Quinolinat  23.3      59  0.0015   14.2   4.7   92  211-325    62-155 (169)
380 TIGR02319 CPEP_Pphonmut carbox  23.1      31  0.0008   16.0   0.7  208   42-320    37-257 (294)
381 PRK02983 lysS lysyl-tRNA synth  23.1      59  0.0015   14.1   2.1   22  182-203   782-805 (1099)
382 cd07025 Peptidase_S66 LD-Carbo  23.0      60  0.0015   14.1   2.7   18  264-281   244-261 (282)
383 PRK05086 malate dehydrogenase;  23.0      60  0.0015   14.1   2.4   42   81-123    69-111 (312)
384 PRK07328 histidinol-phosphatas  22.9      60  0.0015   14.1   5.1   69   64-132    13-86  (268)
385 PRK00230 orotidine 5'-phosphat  22.8      60  0.0015   14.1  10.7  113  112-263    97-211 (231)
386 pfam00332 Glyco_hydro_17 Glyco  22.6      53  0.0014   14.5   1.7   31  173-203   203-233 (310)
387 COG0059 IlvC Ketol-acid reduct  22.5      61  0.0016   14.1   3.1   42  247-288   117-161 (338)
388 TIGR03675 arCOG00543 arCOG0178  22.3      61  0.0016   14.0   2.4   39  152-191   385-423 (630)
389 PRK06294 coproporphyrinogen II  22.2      62  0.0016   14.0   4.0  115  182-303   220-347 (374)
390 cd03323 D-glucarate_dehydratas  22.2      62  0.0016   14.0   5.7   52   66-130   168-220 (395)
391 cd04747 OYE_like_5_FMN Old yel  22.0      62  0.0016   14.0   9.1   33   96-128   183-216 (361)
392 PRK10674 deoxyribodipyrimidine  22.0      62  0.0016   14.0   3.3   72   11-87      5-76  (472)
393 cd07568 ML_beta-AS_like mammal  21.9      63  0.0016   14.0   3.2   64  109-175    28-96  (287)
394 pfam05315 ICEA ICEA Protein. T  21.8      63  0.0016   14.0   2.6  120  102-241    75-202 (230)
395 COG0686 Ald Alanine dehydrogen  21.8      52  0.0013   14.5   1.6   16  230-245   216-231 (371)
396 PRK12928 lipoyl synthase; Prov  21.8      63  0.0016   14.0   6.0  173   65-297    87-268 (290)
397 PRK09057 coproporphyrinogen II  21.6      63  0.0016   13.9   3.4   52   71-126   105-159 (381)
398 COG0648 Nfo Endonuclease IV [D  21.5      64  0.0016   13.9   5.2   41   43-90     69-109 (280)
399 COG1861 SpsF Spore coat polysa  21.4      64  0.0016   13.9   3.8   52  106-175    76-127 (241)
400 PRK05481 lipoyl synthase; Prov  21.4      64  0.0016   13.9   5.7  196   65-332    79-284 (289)
401 pfam06866 DUF1256 Protein of u  21.3      64  0.0016   13.9   5.0   77   43-141    28-106 (164)
402 TIGR00222 panB 3-methyl-2-oxob  21.3      64  0.0016   13.9   4.7   61  113-175   122-183 (267)
403 pfam00863 Peptidase_C4 Peptida  21.2      33 0.00083   15.9   0.4   18   49-66     50-67  (233)
404 cd02812 PcrB_like PcrB_like pr  21.2      65  0.0016   13.9   5.1   41  266-325   163-204 (219)
405 pfam00762 Ferrochelatase Ferro  21.1      65  0.0017   13.9   2.1   39   63-101    93-131 (312)
406 cd03315 MLE_like Muconate lact  21.1      65  0.0017   13.9   5.5  166   64-302    83-260 (265)
407 TIGR02317 prpB methylisocitrat  21.0      65  0.0016   13.9   1.9   86   69-176    90-182 (287)
408 PRK09935 transcriptional regul  21.0      65  0.0017   13.9   6.9   34  163-196    93-127 (210)
409 PRK05790 acetyl-CoA acetyltran  21.0     7.8  0.0002   20.1  -2.8   69   24-93     32-117 (393)
410 PRK09483 response regulator; P  20.9      66  0.0017   13.8   9.1  113  165-305    93-213 (216)
411 cd02801 DUS_like_FMN Dihydrour  20.7      66  0.0017   13.8   7.7   95   66-184    65-162 (231)
412 COG2204 AtoC Response regulato  20.6      66  0.0017   13.8   4.4   13  112-124    65-77  (464)
413 PRK07985 oxidoreductase; Provi  20.6      66  0.0017   13.8   3.6   18  109-126   114-131 (294)
414 TIGR03288 CoB_CoM_SS_B CoB--Co  20.6      67  0.0017   13.8   4.2   19  306-324   210-228 (290)
415 TIGR01838 PHA_synth_I poly(R)-  20.5      31 0.00078   16.1   0.2   22   35-56    348-369 (541)
416 cd03317 NAAAR N-acylamino acid  20.4      67  0.0017   13.8   6.1   50   65-130   136-185 (354)
417 cd04730 NPD_like 2-Nitropropan  20.4      67  0.0017   13.8   5.0   45  234-282   107-161 (236)
418 TIGR03417 chol_sulfatase choli  20.1      51  0.0013   14.6   1.2   25  177-201   260-285 (500)
419 pfam03431 RNA_replicase_B RNA   20.1      68  0.0017   13.7   5.0   70  150-231   300-385 (539)
420 pfam02057 Glyco_hydro_59 Glyco  20.1      68  0.0017   13.7   2.0   95  112-218   116-220 (669)

No 1  
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=100.00  E-value=0  Score=1126.76  Aligned_cols=322  Identities=53%  Similarity=0.876  Sum_probs=320.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             88858563128988999863477888773311666758988110488878632889999999999998889367633025
Q gi|255764463|r   12 CCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNI   91 (337)
Q Consensus        12 ~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I   91 (337)
                      ||+.||||||+++|+|+||+||+|+++|||||+||+||++.++||+||||++|||+|.|++++++++++||++|+|||+|
T Consensus         1 fp~~R~RRlR~~~~iR~lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~SMPGi~R~sid~l~~~v~~~~~lGI~av~LFpvi   80 (322)
T pfam00490         1 FPITRPRRLRRSPALRRLVRETRLSPSDLIYPLFVTEGEDEKEPIPSMPGVYRLSVDLLVKEVEEAVELGIPAVILFGVI   80 (322)
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEECCCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99987765679878999985278888997510699439998403689998514489999999999997799879984458


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             63345544542157653799999999973014479861332710011431001365446289999999999999962897
Q gi|255764463|r   92 PMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGAD  171 (337)
Q Consensus        92 ~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaD  171 (337)
                      ++++||+.|++|||+||++|||||+||++||||+|||||||||||+||||||+++|+||||+|+++|+|||++||+||||
T Consensus        81 ~~~~Kd~~gseA~n~~~lv~raIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~g~IdND~Tl~~L~k~Al~~A~AGaD  160 (322)
T pfam00490        81 DPELKDEDGSEAYNPDGLVQRAIRAIKEAFPDLVVITDVCLCEYTSHGHCGILEDGEVDNDETLELLAKQALSHAEAGAD  160 (322)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCC
T ss_conf             60238955361248742899999999986897067510003666688771237599580599999999999999975998


Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             35246676779999999998778857730033666435430101675310244677774431572114788988887664
Q gi|255764463|r  172 IIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ  251 (337)
Q Consensus       172 ivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~  251 (337)
                      +|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+| ||||||||||+|++||+||+++|++
T Consensus       161 ivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKyaS~fYGPFRdA~~S~~~~-gdrktYQmd~~n~~eAl~e~~~D~~  239 (322)
T pfam00490       161 IVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPAF-GDRKTYQMDPANRREALREVALDIE  239 (322)
T ss_pred             CCCCHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             204031256789999999997799987264306766340120478886157656-8803011699877999999985576


Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf             08987995531145899999996249989999346189999999988897889999999999977269999820189999
Q gi|255764463|r  252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAA  331 (337)
Q Consensus       252 EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a  331 (337)
                      ||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|+||||||||+||||||+++|
T Consensus       240 EGAD~lMVKP~~~YLDii~~~k~~~~~P~~aYqVSGEYamik~aa~~g~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a  319 (322)
T pfam00490       240 EGADMVMVKPALPYLDIIRRVKDRFDLPVAAYQVSGEYAMIKAAAQNGWLDEKRVVLESLLSIKRAGADLIITYFAKEAA  319 (322)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf             09986986264168999999998349987999766999999999986997688899999999886289889860499998


Q ss_pred             HHH
Q ss_conf             998
Q gi|255764463|r  332 RIL  334 (337)
Q Consensus       332 ~~L  334 (337)
                      +||
T Consensus       320 ~~L  322 (322)
T pfam00490       320 RWL  322 (322)
T ss_pred             HHC
T ss_conf             339


No 2  
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00  E-value=0  Score=1122.24  Aligned_cols=320  Identities=57%  Similarity=0.986  Sum_probs=318.0

Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             58563128988999863477888773311666758988110488878632889999999999998889367633025633
Q gi|255764463|r   15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMD   94 (337)
Q Consensus        15 ~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~   94 (337)
                      +||||||+|+++|+||+||+|+++|||||+||+||.+.++||+||||+||||+|.|++++++++++||++|+|||+++++
T Consensus         1 tR~RRlR~~~~iR~Lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGi~r~sid~l~~~v~~~~~lGI~av~LFgvi~~~   80 (320)
T cd04823           1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTPPE   80 (320)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEEECCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEEECCHH
T ss_conf             99863579878999986179888997632599428998325689998606589999999999998899789995466555


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             45544542157653799999999973014479861332710011431001365446289999999999999962897352
Q gi|255764463|r   95 LRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA  174 (337)
Q Consensus        95 ~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA  174 (337)
                      +||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+++|+||||+|++.|+|||++||+||||+||
T Consensus        81 ~KD~~Gs~A~n~~g~v~rair~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~~~idND~Tl~~L~k~A~~~A~AGaDiVA  160 (320)
T cd04823          81 LKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVA  160 (320)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             33788870058655899999999997898099975024667788842131189675589999999999999964999326


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             46676779999999998778857730033666435430101675310244677774431572114788988887664089
Q gi|255764463|r  175 PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA  254 (337)
Q Consensus       175 PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA  254 (337)
                      |||||||||++||++||++||++|+|||||+||||+||||||||++|+|+| |||+||||||+|++||+||+++|++|||
T Consensus       161 PSdMMDGrV~aIR~~Ld~~gf~~~~ImSYsaKyaS~fYGPFRdA~~S~p~~-gdrktYQmd~~n~~eA~~e~~~D~~EGA  239 (320)
T cd04823         161 PSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRK-GDKKTYQMDPANSREALREVALDIAEGA  239 (320)
T ss_pred             CHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             343105589999999997799874671245666452023378885157767-8802033799977999999985275199


Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             87995531145899999996249989999346189999999988897889999999999977269999820189999998
Q gi|255764463|r  255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       255 D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                      |||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+||
T Consensus       240 D~lMVKPa~~YLDii~~~k~~~~~Pv~aYqVSGEYaMikaaa~~G~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~~a~~L  319 (320)
T cd04823         240 DMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAAEWL  319 (320)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf             87996276218999999997769988999774999999999987997578699999999986599889870399999864


Q ss_pred             H
Q ss_conf             5
Q gi|255764463|r  335 T  335 (337)
Q Consensus       335 ~  335 (337)
                      +
T Consensus       320 k  320 (320)
T cd04823         320 R  320 (320)
T ss_pred             C
T ss_conf             9


No 3  
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00  E-value=0  Score=1115.70  Aligned_cols=321  Identities=54%  Similarity=0.909  Sum_probs=316.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             57888585631289889998634778887733116667589881104888786328899999999999988893676330
Q gi|255764463|r   10 KICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP   89 (337)
Q Consensus        10 ~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp   89 (337)
                      ..||++||||||+|+|+|+||+||+|+++|||||+||+||.+.++||+||||++|||+|.|++++++++++||++|+|||
T Consensus         1 ~~fP~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eG~~~~~~I~SMPGi~R~Sid~l~~eve~~~~lGI~av~LFp   80 (321)
T PRK09283          1 MMFPFTRPRRLRKTAALRRLVRETSLTVNDLIYPLFVVEGENEKEEIPSMPGVYRLSIDLLLKEAEEAVDLGIPAVALFG   80 (321)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCEEEEEEECCCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             97998776546798789999850788889976115993189984136899985042899999999999987999899737


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             25633455445421576537999999999730144798613327100114310013654462899999999999999628
Q gi|255764463|r   90 NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG  169 (337)
Q Consensus        90 ~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG  169 (337)
                      +  +++||+.|++|||+||++|||||.||++||||+|||||||||||+||||||+  |+||||+|++.|+|||++||+||
T Consensus        81 v--~~~Kd~~gseA~n~dglv~rAIr~iK~~fpdl~vi~DvcLc~YT~hGHcGi~--~~i~ND~Tl~~L~k~Al~~A~AG  156 (321)
T PRK09283         81 V--PELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGIL--GYVDNDETLEVLAKQALSQAEAG  156 (321)
T ss_pred             C--CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8--4346777561358641899999999986898289730213545578775515--85530999999999999999749


Q ss_pred             CCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             97352466767799999999987788577300336664354301016753102446777744315721147889888876
Q gi|255764463|r  170 ADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASID  249 (337)
Q Consensus       170 aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D  249 (337)
                      ||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|.| |||+||||||+|++||+||+++|
T Consensus       157 aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKyaS~fYGPFRdA~~S~~~~-gdr~tYQmd~~n~~eA~re~~~D  235 (321)
T PRK09283        157 ADIVAPSDMMDGRVGAIREALDAAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPQF-GDRKTYQMDPANRREALREVELD  235 (321)
T ss_pred             CCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCHHHHHHHCCCCC-CCEEEEECCCCCHHHHHHHHHHH
T ss_conf             98325142026689999999997799887053236766340120478886167666-87003315988779999999853


Q ss_pred             HHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             64089879955311458999999962499899993461899999999888978899999999999772699998201899
Q gi|255764463|r  250 IQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAME  329 (337)
Q Consensus       250 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~  329 (337)
                      ++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||++
T Consensus       236 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYamik~a~~~G~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~  315 (321)
T PRK09283        236 IEEGADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLLSFKRAGADGILTYFAKD  315 (321)
T ss_pred             HHHCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf             76099879862641689999999974599989997659999999999869975888999999999863998898704999


Q ss_pred             HHHHHH
Q ss_conf             999985
Q gi|255764463|r  330 AARILT  335 (337)
Q Consensus       330 ~a~~L~  335 (337)
                      +|+||+
T Consensus       316 ~a~~L~  321 (321)
T PRK09283        316 AARWLK  321 (321)
T ss_pred             HHHHHC
T ss_conf             998649


No 4  
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=1106.11  Aligned_cols=328  Identities=52%  Similarity=0.829  Sum_probs=322.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             55788858563128988999863477888773311666758988110488878632889999999999998889367633
Q gi|255764463|r    9 HKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIF   88 (337)
Q Consensus         9 ~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LF   88 (337)
                      ...+|++||||||+++|+|+||+||+|+++|||||+||.||++.++||+|||||||||+|.|+++++++.++||++|+||
T Consensus         2 ~~~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LF   81 (330)
T COG0113           2 MPTFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILF   81 (330)
T ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             86543244342127888999988537877781576899548997641678998302069999999999996699779980


Q ss_pred             ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             02563345544542157653799999999973014479861332710011431001365-44628999999999999996
Q gi|255764463|r   89 PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDG-EIVNDETIELISHAAVIQAD  167 (337)
Q Consensus        89 p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g-~IdND~Tl~~L~k~Al~~A~  167 (337)
                      |++++++||+.||+||||+|+||||||.||+.|||++|||||||||||+||||||++++ .|+||+|+++|+|||++||+
T Consensus        82 gvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~Ae  161 (330)
T COG0113          82 GVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAE  161 (330)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
T ss_conf             89863236743320038778099999999986897299852103677688866115589616164789999999999997


Q ss_pred             CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             28973524667677999999999877885773003366643543010167531024467777443157211478898888
Q gi|255764463|r  168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREAS  247 (337)
Q Consensus       168 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~  247 (337)
                      ||||||||||||||||++||++||++||.||+|||||+||||+||||||||++|+|+| ||||||||||+|++||+||++
T Consensus       162 AGAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~-gdrktYQmDpaN~~EAlrE~~  240 (330)
T COG0113         162 AGADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKF-GDRKTYQMDPANRREALREIE  240 (330)
T ss_pred             CCCCEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHH
T ss_conf             0797552533335339999999987698764043206777662346367774034435-896300469867899999998


Q ss_pred             HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             76640898799553114589999999624998999934618999999998889788999999999997726999982018
Q gi|255764463|r  248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA  327 (337)
Q Consensus       248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A  327 (337)
                      +|++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|||+||||||||+||||||
T Consensus       241 lD~~EGAD~lMVKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA  320 (330)
T COG0113         241 LDIEEGADILMVKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFA  320 (330)
T ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             66870796899768815999999998706997589854548999999998588225889999999998648888976328


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998509
Q gi|255764463|r  328 MEAARILTHS  337 (337)
Q Consensus       328 ~~~a~~L~~~  337 (337)
                      +|+|+||++.
T Consensus       321 ~e~a~~L~~~  330 (330)
T COG0113         321 KEVAEWLKEG  330 (330)
T ss_pred             HHHHHHHHCC
T ss_conf             9999987449


No 5  
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00  E-value=0  Score=1105.83  Aligned_cols=322  Identities=41%  Similarity=0.647  Sum_probs=317.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             65578885856312898899986347788877331166675898811048887863288999999999999888936763
Q gi|255764463|r    8 SHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAI   87 (337)
Q Consensus         8 s~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~L   87 (337)
                      ....||++||||||+++|+|+||+||+|+++||||||||+||.+.++||+||||+||||+|.|++++++++++||++|+|
T Consensus         2 ~~~~fP~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~Eg~~~~epI~SMPGi~R~SiD~L~~eie~~~~lGI~av~L   81 (323)
T PRK13384          2 MSNTFPLRRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMP   81 (323)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             87889987776568987899997407888899663249812899733579999952479999999999999789968983


Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             30256334554454215765379999999997301447986133271001143100136544628999999999999996
Q gi|255764463|r   88 FPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQAD  167 (337)
Q Consensus        88 Fp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~  167 (337)
                      ||+ | ++||+.|++|||+||++|||||.||+.||||+|||||||||||+||||||+++|+||||+|++.|+||||+||+
T Consensus        82 Fgi-~-~~Kd~~gs~a~~~~~lv~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGi~~~~~IdND~Tl~~L~k~Al~~A~  159 (323)
T PRK13384         82 FGI-S-HHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAK  159 (323)
T ss_pred             CCC-C-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             699-9-88997656566876579999999998679829997502466668886662546615459999999999999997


Q ss_pred             CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             28973524667677999999999877885773003366643543010167531024467777443157211478898888
Q gi|255764463|r  168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREAS  247 (337)
Q Consensus       168 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~  247 (337)
                      ||||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+  |||+||||||+|++||+||++
T Consensus       160 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKfaS~fYGPFRdA~~s~p~--gdr~sYQmd~~n~~eA~~e~~  237 (323)
T PRK13384        160 AGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELS--GDRKSYQLDYANGRQALLEAL  237 (323)
T ss_pred             CCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHHCCCCC--CCCCCCCCCCCCHHHHHHHHH
T ss_conf             499842603302668999999999779987467336666645303267898436767--897400369988799999998


Q ss_pred             HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             76640898799553114589999999624998999934618999999998889788999999999997726999982018
Q gi|255764463|r  248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA  327 (337)
Q Consensus       248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A  327 (337)
                      +|++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|+||||||||+||||||
T Consensus       238 ~D~~EGAD~lmVKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamik~aa~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A  317 (323)
T PRK13384        238 LDEAEGADILMVKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYA  317 (323)
T ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             54750999899737723899999999706998899975399999999998699757879999999998659989977066


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|255764463|r  328 MEAARI  333 (337)
Q Consensus       328 ~~~a~~  333 (337)
                      +|+|+|
T Consensus       318 ~~~a~w  323 (323)
T PRK13384        318 KQYAQW  323 (323)
T ss_pred             HHHHCC
T ss_conf             877459


No 6  
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00  E-value=0  Score=1092.21  Aligned_cols=314  Identities=52%  Similarity=0.850  Sum_probs=311.0

Q ss_pred             CCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf             63128988999863477888773311666758988110488878632889999999999998889367633025633455
Q gi|255764463|r   18 RRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN   97 (337)
Q Consensus        18 RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd   97 (337)
                      ||||+++|+|+||+||+|+++|||||+||+||++.++||+||||++|||+|.|++++++++++||++|+|||+ | ++||
T Consensus         1 RRlR~~~~iR~Lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPGi~R~sid~l~~~v~~~~~lGI~av~LFpv-p-~~Kd   78 (314)
T cd00384           1 RRLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGI-P-EHKD   78 (314)
T ss_pred             CCCCCCHHHHHHHHHCCCCHHHCEEEEEEECCCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEECC-C-CCCC
T ss_conf             9888877899998607888899762069945999840368999850328999999999999879988996389-8-8899


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             44542157653799999999973014479861332710011431001365446289999999999999962897352466
Q gi|255764463|r   98 NTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSE  177 (337)
Q Consensus        98 ~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd  177 (337)
                      +.|++|||+||++|||||+||++||||+|||||||||||+||||||+++|+||||+|++.|+|||++||+||||+|||||
T Consensus        79 ~~gseA~n~~glv~raIr~iK~~fpdl~vi~DVcL~pYT~hGHcGil~~g~IdND~Tv~~L~~~Al~~A~AGaDivAPSd  158 (314)
T cd00384          79 EIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSD  158 (314)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             77553469865899999999997798689843033556687771447599582499999999999999974998145302


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             76779999999998778857730033666435430101675310244677774431572114788988887664089879
Q gi|255764463|r  178 MMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADML  257 (337)
Q Consensus       178 MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~l  257 (337)
                      ||||||++||++||++||.+|+|||||+||||+||||||||++|+|+| |||+||||||+|++||+||+++|++||||||
T Consensus       159 MMDGrV~aIR~~Ld~~gf~~v~ImSYsaKyaS~fYGPFRdA~~S~~~~-gdrktYQmd~~n~~eAl~e~~~D~~EGAD~l  237 (314)
T cd00384         159 MMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSF-GDRKTYQMDPANRREALREVELDIEEGADIL  237 (314)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCHHHHHHHCCCCC-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             557789999999997799988053227776340120478886157656-8844443599877999999985476199869


Q ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             95531145899999996249989999346189999999988897889999999999977269999820189999998
Q gi|255764463|r  258 LVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       258 MVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                      ||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+||
T Consensus       238 MVKP~~~yLDii~~~k~~~~~P~~aYqVSGEYaMik~aa~~g~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~~a~~L  314 (314)
T cd00384         238 MVKPALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAARWL  314 (314)
T ss_pred             EECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHC
T ss_conf             85264168999999997059987999765999999999986997578899999999996499999871499998339


No 7  
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00  E-value=0  Score=1071.91  Aligned_cols=312  Identities=38%  Similarity=0.627  Sum_probs=305.9

Q ss_pred             CCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCC
Q ss_conf             898899986347788877331166675898811048887863288999999999999888936763302563-3455445
Q gi|255764463|r   22 KSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPM-DLRNNTG  100 (337)
Q Consensus        22 ~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~-~~Kd~~G  100 (337)
                      .|+++|+||+||+|+++|||||+||+||.+.++||+||||+||||+|.|++++++++++||++|+|||++++ .+||+.|
T Consensus         5 ~n~~iR~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~sMPGv~R~sid~l~~~i~~~~~lGI~av~LF~v~~~~~kkd~~g   84 (320)
T cd04824           5 AHPLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSG   84 (320)
T ss_pred             CCHHHHHHHHHCCCCHHHCEEEEEEECCCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCC
T ss_conf             78999999872798889966425992299983137999996344899999999999987999799716676100687344


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             421576537999999999730144798613327100114310013-6544628999999999999996289735246676
Q gi|255764463|r  101 SHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMM  179 (337)
Q Consensus       101 seA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~-~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM  179 (337)
                      ++|||++|++|||||+||++||||+|||||||||||+||||||++ +|+||||+||++|+|||++||+||||||||||||
T Consensus        85 s~a~~~~~lv~rAIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM  164 (320)
T cd04824          85 SAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDMM  164 (320)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEECCHHCC
T ss_conf             50148654999999999987898499954101456687777754779817648999999999999997089833413113


Q ss_pred             CCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             779999999998778857-7300336664354301016753102446777744315721147889888876640898799
Q gi|255764463|r  180 DGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL  258 (337)
Q Consensus       180 DGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM  258 (337)
                      ||||++||++||++||++ |+|||||+||||+||||||||++|+|+| ||||||||||+|++||+||+++|++|||||||
T Consensus       165 DGrV~aIR~~LD~~g~~~~v~ImSYsaKyaS~fYGPFRdA~~S~p~~-gdrktYQmd~~n~~eAlre~~~D~~EGAD~lM  243 (320)
T cd04824         165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSF-GDRRCYQLPPGARGLALRAVERDVSEGADMIM  243 (320)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCCC-CCCCEEECCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf             46899999999987895556310177776563023278885056457-88754206988578999998643773999799


Q ss_pred             ECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             553114589999999624-9989999346189999999988897889999999999977269999820189999998
Q gi|255764463|r  259 VKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       259 VKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                      |||||||||||+++|++| ++|++||||||||||||+|+++||+|++++++|+|+||||||||+||||||+|+|+||
T Consensus       244 VKPa~~YLDiI~~~k~~~~~~Pv~aYqVSGEYaMikaaa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~e~a~wL  320 (320)
T cd04824         244 VKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELLDWL  320 (320)
T ss_pred             ECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHC
T ss_conf             52762289999999985789988999762899999999987997578899999999996599999871499998449


No 8  
>KOG2794 consensus
Probab=100.00  E-value=0  Score=912.83  Aligned_cols=330  Identities=41%  Similarity=0.676  Sum_probs=320.9

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             26655788858563128988999863477888773311666758988110488878632889999999999998889367
Q gi|255764463|r    6 AISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAI   85 (337)
Q Consensus         6 ~is~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av   85 (337)
                      -|.+++.+++|+||.|.++.+|.|.+||.|++++||||+||+|+++..+||.||||+|||+++.|.++++++++.|+++|
T Consensus         7 l~~~P~~~s~~l~~g~~~p~lR~~q~~~~is~~nliyPlFI~e~~dd~~pI~SmPg~~r~G~~rL~e~l~plv~~Gl~sV   86 (340)
T KOG2794           7 LIDQPLQLSRRLHRGYKHPLLRAWQQETNISPANLIYPLFIHEGEDDFTPIDSMPGIYRLGVNRLKEELAPLVAKGLRSV   86 (340)
T ss_pred             HHCCCCCHHHHHHCCCCCHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             00476557778635788878999860487784332356887427655552024775168879999999999997034358


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf             63302563345544542157653799999999973014479861332710011431001-36544628999999999999
Q gi|255764463|r   86 AIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL-CDGEIVNDETIELISHAAVI  164 (337)
Q Consensus        86 ~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~  164 (337)
                      +|||++++.+||+.|++|+|++|+|.++||.||+.||||+|.|||||||||+|||||++ +||.|.||+|++.|+++|++
T Consensus        87 iLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv~rlaevAv~  166 (340)
T KOG2794          87 ILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESVHRLAEVAVS  166 (340)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             98268885346854322358888477789999875866078753330345578866133366521578889999999999


Q ss_pred             HHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99628973524667677999999999877885773003366643543010167531024467777443157211478898
Q gi|255764463|r  165 QADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIR  244 (337)
Q Consensus       165 ~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~  244 (337)
                      ||+||||+|||||||||||++||++|+++||.+|.||||||||+|+||||||+|+.|+|+| ||||+|||++..+..|+|
T Consensus       167 yAkAGa~vVapSDmmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~f-gDrkcYQlP~~~R~la~r  245 (340)
T KOG2794         167 YAKAGADVVAPSDMMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKF-GDRKCYQLPANSRGLALR  245 (340)
T ss_pred             HHHCCCCEECCHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHHHCCCCC-CCCCEEECCCCHHHHHHH
T ss_conf             8862795536067533349999999988422544777604444101465067775228655-773002179842789999


Q ss_pred             HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             888766408987995531145899999996249-9899993461899999999888978899999999999772699998
Q gi|255764463|r  245 EASIDIQESADMLLVKPGLPYLDVCFRIKEKFG-LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       245 e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~-~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                      ..++|+.||||||||||||||||||+.+|+.+. +|+++||||||||||++|+++|.+|++++++|++.+|+|||||+||
T Consensus       246 A~erD~aEGAD~lmVKPg~pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIl  325 (340)
T KOG2794         246 ARERDVAEGADILMVKPGLPYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGMFDLKKVVMESMLGFRRAGADIIL  325 (340)
T ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             88755642676688559972899999987438888448988441689999888616210899999999999863885897


Q ss_pred             ECHHHHHHHHHHC
Q ss_conf             2018999999850
Q gi|255764463|r  324 TYFAMEAARILTH  336 (337)
Q Consensus       324 tY~A~~~a~~L~~  336 (337)
                      ||||++++.||.+
T Consensus       326 TYfapq~l~~L~~  338 (340)
T KOG2794         326 TYFAPQLLTWLCG  338 (340)
T ss_pred             EECCHHHHHHHHC
T ss_conf             5306999988633


No 9  
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.29  E-value=0.0085  Score=40.13  Aligned_cols=173  Identities=21%  Similarity=0.320  Sum_probs=112.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      ..+++..++.++++.+-|+-  ++=-++| --|+         .|+  ++||++|+.||+..|.+|.=.           
T Consensus        12 ~~~l~~A~~ia~e~v~~~~d--iiE~GTP-LIk~---------eG~--~aV~~lr~~fP~~~ivAD~Kt-----------   66 (429)
T PRK07028         12 LLELDRAIEIAKEAVAGGAD--WIEAGTP-LIKS---------EGM--NAIRTLRKNFPDLTIVADMKT-----------   66 (429)
T ss_pred             CCCHHHHHHHHHHHHHCCCC--EEEECCH-HHHH---------HHH--HHHHHHHHHCCCCEEEEEEEE-----------
T ss_conf             48889999999987415875--9991768-8886---------418--999999987899869887640-----------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC
Q ss_conf             13654462899999999999999628973524667677999999999877885773003366643543010167531024
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD  223 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p  223 (337)
                      ++-|.           --+-..++||||+|.=+.-.|-.  .|+++..+..-....+|.                     
T Consensus        67 mDaG~-----------~Ea~~A~~AGADivtVlG~a~d~--TI~~aV~aA~k~G~~v~v---------------------  112 (429)
T PRK07028         67 MDTGA-----------MEVEMAAKAGADVVCILGVADDS--TIADAVRAARKYGVLVMA---------------------  112 (429)
T ss_pred             CCCCH-----------HHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCEEEE---------------------
T ss_conf             45508-----------89999987699889994578836--999999999970988999---------------------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-------HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf             467777443157211478898888766408987995531-------1458999999962499899993461899999999
Q gi|255764463|r  224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG-------LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAAS  296 (337)
Q Consensus       224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~  296 (337)
                          |    -+++.|.-+-.+|.   .+=|+|++-|--|       .+-+++++.++.+++.|+++              
T Consensus       113 ----D----lI~v~d~~~ra~el---~~lGvd~I~vH~G~D~Q~~g~~p~~~l~~v~~~~~~~vAV--------------  167 (429)
T PRK07028        113 ----D----LINVPDPVKRAVEL---EELGVDIINVHVGIDQQMLGKDPLELLKKVSEEVSIPIAA--------------  167 (429)
T ss_pred             ----E----ECCCCCHHHHHHHH---HHCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHCCCEEEE--------------
T ss_conf             ----8----55899889999999---9709988999762335531798499999999755971899--------------


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             888978899999999999772699998201
Q gi|255764463|r  297 LQGWINKNDAMMESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       297 ~~g~~d~~~~~~E~l~~~kRAGAd~IitY~  326 (337)
                       +|-++.+.+     --.-.+|||++|-=.
T Consensus       168 -AGGi~~~t~-----~~~v~~GAdIvIVGg  191 (429)
T PRK07028        168 -AGGLDAETA-----VKAVEAGADIVIVGG  191 (429)
T ss_pred             -ECCCCHHHH-----HHHHHCCCCEEEECC
T ss_conf             -668787769-----999975998999894


No 10 
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=96.17  E-value=0.024  Score=37.03  Aligned_cols=221  Identities=18%  Similarity=0.195  Sum_probs=112.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      ++=|+-|.++.|.+++.++++.+.|++-|.+-++..++.+-          ......+|.||+.+|++.+-+   +.+.-
T Consensus        62 p~~~~ay~lt~eei~~~~~~a~~~G~~Ei~~~gG~~Pel~~----------~~y~e~~r~ik~~~p~~~i~a---~s~~E  128 (343)
T TIGR03551        62 KGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG----------DFYLDILRAVKEEVPGMHIHA---FSPME  128 (343)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH----------HHHHHHHHHHHHHCCCCEEEE---CCHHH
T ss_conf             99986600799999999999997699689982586878888----------899999999987488301022---78999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCC--------EEECCCCC-CCHHHHHHHHHHHCCCCCCCEECHHHH
Q ss_conf             1143100136544628999999999999-9962897--------35246676-779999999998778857730033666
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVI-QADAGAD--------IIAPSEMM-DGRVQEIRKKLDSHGHINVGIMPYVAK  206 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~-~A~AGaD--------ivAPSdMM-DGrV~aIR~~Ld~~g~~~~~ImsYsaK  206 (337)
                      .+-   +.....+...+.+..|.+..+. .-..||-        .++|.-+. +.++..+|.+-...=.+.+++|     
T Consensus       129 i~~---~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~lGi~ttatml-----  200 (343)
T TIGR03551       129 VYY---GARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIM-----  200 (343)
T ss_pred             HHH---HHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-----
T ss_conf             999---998659999999999997587767886513214012414696989999999999999985997202234-----


Q ss_pred             HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CEEEECCC---HHHHH
Q ss_conf             435430101675310244677774431572114788988887664089----------------87995531---14589
Q gi|255764463|r  207 FNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA----------------DMLLVKPG---LPYLD  267 (337)
Q Consensus       207 faS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA----------------D~lMVKPa---~~yLD  267 (337)
                           ||              --.|+. +-...-++||+.+.. --|-                .--+++|+   .-+|-
T Consensus       201 -----~G--------------~gEt~e-erv~hL~~lR~lqd~-tggf~~fIp~~f~p~~t~l~~~~~~~~~~~~~e~l~  259 (343)
T TIGR03551       201 -----YG--------------HVETPE-HWVDHLLILREIQEE-TGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLK  259 (343)
T ss_pred             -----EC--------------CCCCHH-HHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
T ss_conf             -----27--------------889999-999999999986201-388269981365667880444156678985799999


Q ss_pred             HHHHHHHHC-C-CC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             999999624-9-98-99993461899999999888978899999999999772699
Q gi|255764463|r  268 VCFRIKEKF-G-LP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       268 ii~~~k~~~-~-~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd  320 (337)
                      +|.-.|--+ + +| +-||.|.=--...+.+-..|.=|....++|.- ..+-||+.
T Consensus       260 ~iAvaRl~l~~~i~~Iqa~w~~lg~~~~q~~L~~GanD~gGt~~~e~-i~~~ag~~  314 (343)
T TIGR03551       260 VHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEES-ISRAAGAS  314 (343)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCHHHCCC
T ss_conf             99999997047765422266255989999999579846766667775-63621579


No 11 
>PRK07360 FO synthase subunit 2; Reviewed
Probab=95.55  E-value=0.053  Score=34.73  Aligned_cols=221  Identities=19%  Similarity=0.197  Sum_probs=111.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      +.=|+-|.+|.|.+++.++++.+.|++-+.+-++..++.+-..     .+.......++.||+.||++.+-+      ||
T Consensus        83 p~~~~ay~ls~eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~-----~~~~~y~~~~~~ik~~~p~i~i~a------~s  151 (375)
T PRK07360         83 KGDPGAFWLDIEEILEKAAEAVKAGATEVCIQGGLHPAADLNG-----SSLDFYLEILKAIKAEFPGIHLHA------FS  151 (375)
T ss_pred             CCCCCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC-----CHHHHHHHHHHHHHHHCCCCEEEE------CC
T ss_conf             8997660278999999999998658808997688783445464-----518999999999998689855640------89


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE----------------EECCCCC-CCHHHHHHHHHHHCCCCCCC
Q ss_conf             114310013654462899999999999999628973----------------5246676-77999999999877885773
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADI----------------IAPSEMM-DGRVQEIRKKLDSHGHINVG  199 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi----------------vAPSdMM-DGrV~aIR~~Ld~~g~~~~~  199 (337)
                      .---.-+-+...+.-.+.+..|.+       ||.|.                ++|.-.- +-++..+|.+-...=-+.++
T Consensus       152 ~~Ei~~~a~~~g~~~~e~l~~Lke-------AGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~~~Ah~lGi~ttat  224 (375)
T PRK07360        152 PQEVQFAAREDGLSYEEVLKALKD-------AGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIVKTAHKLGLPTTST  224 (375)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH-------CCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             999999886649988999999997-------6987588876210345566465989889999999999999829970100


Q ss_pred             EECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---------------HCCCCEEEEC---C
Q ss_conf             003366643543010167531024467777443157211478898888766---------------4089879955---3
Q gi|255764463|r  200 IMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI---------------QESADMLLVK---P  261 (337)
Q Consensus       200 ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~---------------~EGAD~lMVK---P  261 (337)
                      +|          |              |--.|+.- -...-.+||+.+..-               .+-...-+|+   |
T Consensus       225 mL----------~--------------Gh~Et~ee-rv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~~~~~~~~  279 (375)
T PRK07360        225 MM----------Y--------------GHIETPEH-RIDHLSILREIQKETGGITEFIPLPFVHENAPLYERGRVKRGAP  279 (375)
T ss_pred             EE----------C--------------CCCCCHHH-HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             26----------1--------------89899999-99999999988874498469971143589985000156788886


Q ss_pred             CHHHHHHHHHHHHHC-C-CC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             114589999999624-9-98-999934618999999998889788999999999997726999
Q gi|255764463|r  262 GLPYLDVCFRIKEKF-G-LP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDG  321 (337)
Q Consensus       262 a~~yLDii~~~k~~~-~-~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~  321 (337)
                      +.-||-++.-.|=-+ + +| +-||.|.=-....+.|-..|.=|...+++|--+ .+-||+..
T Consensus       280 ~~e~lk~~AvaRl~Ldn~i~~Iqa~Wv~~g~~~~q~aL~~GanD~ggt~~ee~i-~~~aG~~~  341 (375)
T PRK07360        280 GLEDLKLYAVSRIFLGNWIKNIQPSWVKLGLKLAQEALNCGANDLGGTLMEEHI-TKMAGASG  341 (375)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             698999999999983388876577775448999999996699767665666750-01226899


No 12 
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.45  E-value=0.14  Score=31.90  Aligned_cols=233  Identities=20%  Similarity=0.182  Sum_probs=126.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf             87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH  138 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h  138 (337)
                      +-|...++-|.+-..++.+.+.||..|-+|-.    +.|.        .| +..+++..|+.-    ..+.+|+|--++.
T Consensus        87 ~vGy~~~pddvv~~~v~~a~~~Gidv~rifd~----lndi--------~n-l~~ai~~~k~~G----~~~~~~i~yt~sp  149 (463)
T PRK12331         87 LLGYRNYADDVVESFVQKSIENGIDIIRIFDA----LNDV--------RN-LQTAVKATKKAG----GHAQVAISYTTSP  149 (463)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC----CCHH--------HH-HHHHHHHHHHCC----CEEEEEEEEECCC
T ss_conf             24311378089999999999859997887405----6646--------77-899999999707----8699999972588


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHC----CCCCCCEECHHHH
Q ss_conf             431001365446289999999999999962897352466767--------7999999999877----8857730033666
Q gi|255764463|r  139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSH----GHINVGIMPYVAK  206 (337)
Q Consensus       139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~----g~~~~~ImsYsaK  206 (337)
                      -|             |++.+.++|....++|||.|+=-||.-        -.|++||+.++--    .+. +.=|+-+.-
T Consensus       150 ~~-------------t~~yyv~~a~~l~~~Gad~I~ikD~aGll~P~~~~eLV~aLk~~~~lpI~~HtH~-t~Gla~an~  215 (463)
T PRK12331        150 VH-------------TIDYFVKLAKEMQEIGADSICIKDMAGILTPYVAYELVKCIKENVTVPLEVHTHA-TSGIAEMTY  215 (463)
T ss_pred             CC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHH
T ss_conf             67-------------6999999999999649988998678677688999999999997449856998368-875799999


Q ss_pred             HHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH---C------
Q ss_conf             4354301016753102-44677774431572114788988887664089879955311458999999962---4------
Q gi|255764463|r  207 FNSSFYGPYRDAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK---F------  276 (337)
Q Consensus       207 faS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~---~------  276 (337)
                      .+-.==|  -|.++.+ +.+.|  -|=|=+...--.+++....|.  |-|+-.+.+.-.|+.-+++--..   +      
T Consensus       216 laAieAG--aDivD~a~~~~s~--gtsqP~~~s~v~~l~~~~~~~--~ld~~~l~~i~~y~~~vr~~y~~~~~~~~~~~~  289 (463)
T PRK12331        216 LKAIEAG--ADIIDTAISPFAG--GTSQPATESMVIALQDLGYDT--GLDLEELSEIAEYFNPIRDHYREEGILNPKVKD  289 (463)
T ss_pred             HHHHHCC--CCEEEECCCCCCC--CCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9999849--9999623535467--978987999999985389999--989999999999999999999874478875766


Q ss_pred             -CCCEEEEEC-CHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHHH
Q ss_conf             -998999934-618999999-9988897889999999999977269999-820189
Q gi|255764463|r  277 -GLPTFAYQV-SGEYAMIKA-ASLQGWINKNDAMMESLLAFKRAGCDGI-FTYFAM  328 (337)
Q Consensus       277 -~~P~~aYqV-SGEYami~~-a~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A~  328 (337)
                       +.-+..||+ -|-|+-++. +.+.|..|.=.-++|-.--.++-..+.+ +|=+..
T Consensus       290 ~d~~v~~hq~PGGm~snl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~~~VTP~SQ  345 (463)
T PRK12331        290 VEPKTLIYQVPGGMLSNLLSQLKEQGLADKYEEVLAEVPKVRADLGYPPLVTPLSQ  345 (463)
T ss_pred             CCHHHEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCHHH
T ss_conf             77435123687306678999999778476799999999999997499983592889


No 13 
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.36  E-value=0.17  Score=31.29  Aligned_cols=215  Identities=21%  Similarity=0.245  Sum_probs=131.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf             87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH  138 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h  138 (337)
                      +=|...|+=|.+-+.++...+.||.-|=+|             .|.|+-.=++.||+++|+.-..    .-.++| ||..
T Consensus        89 lvGYrhyaDDvVe~Fv~ka~~nGidvfRiF-------------DAlND~RNl~~ai~a~kk~G~h----~q~~i~-YT~s  150 (472)
T COG5016          89 LVGYRHYADDVVEKFVEKAAENGIDVFRIF-------------DALNDVRNLKTAIKAAKKHGAH----VQGTIS-YTTS  150 (472)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEC-------------HHCCCHHHHHHHHHHHHHCCCE----EEEEEE-ECCC
T ss_conf             136567845899999999986487579721-------------1104646799999999961863----689987-4268


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHC------CCCCCCEECHH
Q ss_conf             431001365446289999999999999962897352466767--------7999999999877------88577300336
Q gi|255764463|r  139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSH------GHINVGIMPYV  204 (337)
Q Consensus       139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~------g~~~~~ImsYs  204 (337)
                      -            =.|++...+.|..+++.|+|.||=-||--        --|++||+.++-.      --.....|+|-
T Consensus       151 P------------vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~yl  218 (472)
T COG5016         151 P------------VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYL  218 (472)
T ss_pred             C------------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf             8------------6528999999999997279878840000269868899999999974597069850455561799999


Q ss_pred             HHHHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHCCCCEEEECCCHHHHHHHHHHHHHC-----
Q ss_conf             6643543010-16753102446777744315721147889888876--640898799553114589999999624-----
Q gi|255764463|r  205 AKFNSSFYGP-YRDAISTRDLLKGDKKTYYLDPANVQEAIREASID--IQESADMLLVKPGLPYLDVCFRIKEKF-----  276 (337)
Q Consensus       205 aKfaS~fYgP-FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D--~~EGAD~lMVKPa~~yLDii~~~k~~~-----  276 (337)
                      +- .-  =|- .=|.|-| | +.|  -|=| ++   .|.+-.+..+  -+.|-|+-.++..--|.-   +++.++     
T Consensus       219 kA-vE--AGvD~iDTAis-p-~S~--gtsq-P~---tEtmv~aL~gt~yDtgld~~~l~~~~~yf~---~vrkkY~~~~~  284 (472)
T COG5016         219 KA-VE--AGVDGIDTAIS-P-LSG--GTSQ-PA---TETMVAALRGTGYDTGLDLELLEEIAEYFR---EVRKKYKGLLE  284 (472)
T ss_pred             HH-HH--HCCCHHHHHHC-C-CCC--CCCC-CC---HHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHHHHHHHCCC
T ss_conf             99-98--17642221004-5-557--8889-95---899999962799876536999999999999---99998753268


Q ss_pred             ------CCCEEEEECCHHH--HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             ------9989999346189--9999999888978899999999999772699
Q gi|255764463|r  277 ------GLPTFAYQVSGEY--AMIKAASLQGWINKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       277 ------~~P~~aYqVSGEY--ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd  320 (337)
                            +--+-.|||-|--  .|+...-++|.+|.-.-+   |.-+.|--.|
T Consensus       285 ~~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eV---LeEvprVred  333 (472)
T COG5016         285 PQAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEV---LEEVPRVRED  333 (472)
T ss_pred             CCCCCCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHHH
T ss_conf             401478875067637717889999999873456679999---9984888860


No 14 
>PRK08445 hypothetical protein; Provisional
Probab=95.33  E-value=0.06  Score=34.38  Aligned_cols=220  Identities=20%  Similarity=0.205  Sum_probs=119.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      +.=|+-|.+|.+.+.+.++++.+.|+.-|.+-+++.++++=+          .....+|.||+.||++-      +..||
T Consensus        65 ~~~~~aY~ls~eei~~~~~~a~~~g~tEv~i~GG~~P~l~~~----------yY~~l~r~ik~~~P~i~------ihaft  128 (348)
T PRK08445         65 LKEEDAYILSFEEIDQKIEELLAIGGTQILFQGGVHPKLKIE----------WYENLVSHIAQKYPTIT------IHGFS  128 (348)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCCC------CCCCC
T ss_conf             999876227999999999999864981899827989999777----------99999999997577542------42799


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCE-------------------------------EECCCCCCCHHH
Q ss_conf             11431001365446289999999999999-9628973-------------------------------524667677999
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVIQ-ADAGADI-------------------------------IAPSEMMDGRVQ  184 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~-A~AGaDi-------------------------------vAPSdMMDGrV~  184 (337)
                      .---.-+-+-..+.-++.+..|-+.-|.- --.||.|                               -..+-||=|.|.
T Consensus       129 ~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~AH~lGi~ttaTMlyGhiE  208 (348)
T PRK08445        129 AVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQAHKIGMKSTATMMFGTVE  208 (348)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf             99999999981989999999999819887888662634889998748888999999999999998699641213626779


Q ss_pred             ----------HHHHHHHHCC-CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             ----------9999998778-85773003366643543010167531024467777443157211478898888766408
Q gi|255764463|r  185 ----------EIRKKLDSHG-HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       185 ----------aIR~~Ld~~g-~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                                .+|+.=|+.| |+.-.-++                             ||  |.|....        .+|
T Consensus       209 t~e~rv~HL~~lR~lQdeTgGF~~FIpl~-----------------------------F~--p~nt~l~--------~~~  249 (348)
T PRK08445        209 NDEEIIEHWEHIRDLQDETGGFRAFILWS-----------------------------FQ--PDNTPLK--------EEH  249 (348)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEECC-----------------------------CC--CCCCHHH--------CCC
T ss_conf             99999999999999998619978998543-----------------------------10--6997020--------037


Q ss_pred             CCEEEECCCHHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf             98799553114589999999624-998-9999346189999999988897889999999999977269999820189999
Q gi|255764463|r  254 ADMLLVKPGLPYLDVCFRIKEKF-GLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAA  331 (337)
Q Consensus       254 AD~lMVKPa~~yLDii~~~k~~~-~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a  331 (337)
                      -..-. -++.-||-++.-.|=-. ++| +-+|.|.=-..+-+.|-.-|.=|....++|--+ .+-|||..-+  -..++.
T Consensus       250 ~~~~~-~~~~e~Lk~~AvsRL~Ldni~~Iqa~Wv~~G~~~aq~aL~~GanD~gGT~~eE~I-~~aAGa~~~~--~~~~l~  325 (348)
T PRK08445        250 PEIKK-QSSNRYLRLLAVSRLFLDNFKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENV-VKAAGASFRM--NQAEMI  325 (348)
T ss_pred             CCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCEE-HHHCCCCCCC--CHHHHH
T ss_conf             87789-9879999999999998648876062102057899999995699777655101011-2510899889--999999


Q ss_pred             HHHH
Q ss_conf             9985
Q gi|255764463|r  332 RILT  335 (337)
Q Consensus       332 ~~L~  335 (337)
                      +..+
T Consensus       326 ~lI~  329 (348)
T PRK08445        326 ELIK  329 (348)
T ss_pred             HHHH
T ss_conf             9999


No 15 
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=95.32  E-value=0.11  Score=32.66  Aligned_cols=227  Identities=16%  Similarity=0.144  Sum_probs=131.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      |.=|-++.+.+.++++++.+.|++-|++=++..++..-+          +.-..++.||+.||++.+      -.+|.-.
T Consensus        85 ~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~----------y~~~~~~~ik~~~p~~~i------~a~s~~e  148 (370)
T COG1060          85 PKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE----------YYEELFRTIKEEFPDLHI------HALSAGE  148 (370)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCHHH------CCCCHHH
T ss_conf             655316999999999999875986999805768774367----------999999999885730343------0167888


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE----------------EE-CCCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             310013654462899999999999999628973----------------52-4667677999999999877885773003
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGADI----------------IA-PSEMMDGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi----------------vA-PSdMMDGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      -.=+-..+.....+.++.|-       +||.|-                ++ |.---+.|+..++.+. ..|...++.|-
T Consensus       149 i~~~~~~~~~s~~E~l~~Lk-------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah-~lGI~~tatml  220 (370)
T COG1060         149 ILFLAREGGLSYEEVLKRLK-------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH-RLGIPTTATML  220 (370)
T ss_pred             HHHHHHCCCCCHHHHHHHHH-------HCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHHH-HCCCCCCCEEE
T ss_conf             67987436888999999999-------76987674754114167799863798899999999999999-76998420347


Q ss_pred             HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------------HCCC---CEEEECCCHHHH
Q ss_conf             366643543010167531024467777443157211478898888766-------------4089---879955311458
Q gi|255764463|r  203 YVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI-------------QESA---DMLLVKPGLPYL  266 (337)
Q Consensus       203 YsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~-------------~EGA---D~lMVKPa~~yL  266 (337)
                      |---     .+ ..|.+++                  -+.+|+.+.--             ..|.   ...-=.++..+|
T Consensus       221 ~Gh~-----E~-~ed~~~h------------------l~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l  276 (370)
T COG1060         221 LGHV-----ET-REDRIDH------------------LEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDL  276 (370)
T ss_pred             EEEC-----CC-HHHHHHH------------------HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             8732-----88-8999999------------------9999999998589579980554578887666678989989999


Q ss_pred             HHHHHHHHHC--CCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH-HHHHHHHHHC
Q ss_conf             9999999624--998-99993461899999999888978899999999999772699998201-8999999850
Q gi|255764463|r  267 DVCFRIKEKF--GLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF-AMEAARILTH  336 (337)
Q Consensus       267 Dii~~~k~~~--~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~-A~~~a~~L~~  336 (337)
                      -+|+-.+--+  .++ +.+|.|.-+-.+...+-..|.-|.-..+.| =.-.+.||+.- -..- ..++.+++++
T Consensus       277 ~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~-E~v~~~a~~~~-~~~~~~eel~~~i~~  348 (370)
T COG1060         277 KAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYE-EKVNPAAGAFS-GDWRSVEELAALIKE  348 (370)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCC-CCCCCHHHHHHHHHH
T ss_conf             9999999970676542417441036699999998286167677755-34365555556-789999999999998


No 16 
>PRK08508 biotin synthase; Provisional
Probab=95.06  E-value=0.23  Score=30.41  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             CCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCC
Q ss_conf             6328-899999999999988893676330256334554454215765379999999997301447986133271001143
Q gi|255764463|r   62 VMRM-SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGH  140 (337)
Q Consensus        62 v~R~-Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGH  140 (337)
                      .|++ +.+.+++.++.+.+.|+..|-+--    +-+....    .+...++++|+.||+.+|++.+    |+|       
T Consensus        36 ~Y~l~~~eeIl~~A~~a~~~G~~rf~lv~----sg~~~~~----~~~e~v~~~v~~Ik~~~~~l~~----c~s-------   96 (279)
T PRK08508         36 RYKRKEIEQIVQEAKMARANGALGFCLVT----AGRGLDD----KKLEYVAKAAKAVKKEVPGLHL----IAC-------   96 (279)
T ss_pred             EECCCCHHHHHHHHHHHHHCCCCEEEEEE----ECCCCCH----HHHHHHHHHHHHHHHCCCCEEE----EEE-------
T ss_conf             10789999999999999975997689998----2368875----4499999999998633799357----611-------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--------------EECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             10013654462899999999999999628973--------------524667677999999999877885
Q gi|255764463|r  141 DGILCDGEIVNDETIELISHAAVIQADAGADI--------------IAPSEMMDGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--------------vAPSdMMDGrV~aIR~~Ld~~g~~  196 (337)
                      +|++..             +|+..+.+||+|-              |+|.---|-|+..||.+ .+.|++
T Consensus        97 lG~l~~-------------e~~~~LkeAGvdrY~hNlETs~~~y~~I~tThty~dRl~tl~~~-k~aGl~  152 (279)
T PRK08508         97 NGMASV-------------EQLKELKKAGIFSYNHNLETSKEFFPKICTTHSWEERFQTCLNA-KEAGLG  152 (279)
T ss_pred             CCCCCH-------------HHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHH-HHCCCE
T ss_conf             785799-------------99999998397123076676768757658998889999999999-981994


No 17 
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.02  E-value=0.18  Score=31.19  Aligned_cols=224  Identities=17%  Similarity=0.210  Sum_probs=120.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf             87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH  138 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h  138 (337)
                      +=|...|+=|.+-+.++++.+.||--|=+|-    .+         |.--=+..+|++.|+.-    -++..|+| ||-+
T Consensus       619 ~vGY~~Ypdnvv~~fv~~a~~~GiDvfRiFD----~L---------N~~~nm~~~i~~v~~~g----~~~e~aic-yTGd  680 (1147)
T PRK12999        619 AVGYTNYPDNVVRAFVREAAAAGIDVFRIFD----SL---------NWVENMRVAIDAVRETG----KVAEAAIC-YTGD  680 (1147)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC----CC---------CCHHHHHHHHHHHHHCC----CEEEEEEE-ECCC
T ss_conf             4576679737999999999983989116731----34---------46677899999999709----88999987-4257


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHCCCCCCCEECHHHHHHHH
Q ss_conf             431001365446289999999999999962897352466767--------799999999987788577300336664354
Q gi|255764463|r  139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSHGHINVGIMPYVAKFNSS  210 (337)
Q Consensus       139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~  210 (337)
                          |++-..  ..-|++.+.++|.-+.++|||++|=-||--        --|+++|+..      +++|--++--=+..
T Consensus       681 ----i~dp~~--~~~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~~------~lPIhlHtHdTsG~  748 (1147)
T PRK12999        681 ----ILDPAR--AKYDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEEV------DLPIHLHTHDTSGN  748 (1147)
T ss_pred             ----CCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC------CCCEEEECCCCCCH
T ss_conf             ----778788--876699999999999976898899714454688799999999998616------98459843678855


Q ss_pred             HHCCHH-------HHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC----C
Q ss_conf             301016-------753102-4467777443157211478898888766408987995531145899999996249----9
Q gi|255764463|r  211 FYGPYR-------DAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG----L  278 (337)
Q Consensus       211 fYgPFR-------dA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~----~  278 (337)
                      --.-.-       |.++.+ .++.|  -|=|=+...--.|++...+|-  |-|+-.+-.--.|+.-+|..=..|.    -
T Consensus       749 ~~at~laA~eAGvDiVD~A~ssmSg--~TSQP~l~slvaaL~gT~rdt--gLdle~L~~is~Ywe~VR~~Y~~FEs~~~~  824 (1147)
T PRK12999        749 GLATYLAAAEAGVDIVDVAMASMSG--LTSQPSLSSLVAALAGTERDT--GLDLEALRDLSPYWEAVRPYYAPFESGLKS  824 (1147)
T ss_pred             HHHHHHHHHHCCCCEEECCCHHHCC--CCCCCCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8999999998599989635411028--988988999999843789898--989899999999999999998730455667


Q ss_pred             ---CEEEEECC-HHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             ---89999346-18999999-9988897889999999999977
Q gi|255764463|r  279 ---PTFAYQVS-GEYAMIKA-ASLQGWINKNDAMMESLLAFKR  316 (337)
Q Consensus       279 ---P~~aYqVS-GEYami~~-a~~~g~~d~~~~~~E~l~~~kR  316 (337)
                         -|.-+|+- |-|+-++. +-++|++|.=.-+++.+--..+
T Consensus       825 ~d~~Vy~hemPGGq~SNL~~Qa~~~Gl~dr~~EV~~~y~~Vn~  867 (1147)
T PRK12999        825 PTTEVYLHEMPGGQYSNLKQQARSLGLGDRFEEVKEMYADVNR  867 (1147)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             8865377217950565699999867818679999999999999


No 18 
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.01  E-value=0.12  Score=32.33  Aligned_cols=164  Identities=19%  Similarity=0.231  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC--------CC
Q ss_conf             9999999997301447986133271001143100136544628999999999999996289735246676--------77
Q gi|255764463|r  110 INEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM--------DG  181 (337)
Q Consensus       110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM--------DG  181 (337)
                      +...++.|-... ++=|+.|.      ++|.-+      +   ..+   .+..-.+.+||+--|.--|-.        +|
T Consensus        66 ~~~~~~~I~~a~-~lPviaD~------DtGyG~------~---~nv---~rtV~~~e~aGvagi~IEDq~~pKrcgh~~g  126 (292)
T PRK11320         66 VLIDVRRITDAC-DLPLLVDI------DTGFGG------A---FNI---ARTIKSMIKAGAAAVHIEDQVGQKRCGHRPN  126 (292)
T ss_pred             HHHHHHHHHHCC-CCCEEEEC------CCCCCC------H---HHH---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
T ss_conf             999999998355-88879877------677882------7---889---9999999974996898415556655686667


Q ss_pred             --------HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             --------999999999877885773003366643543010167531024467777443157211478898888766408
Q gi|255764463|r  182 --------RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       182 --------rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                              .++.||.+.+...-.+..|++-.                           --.....-+||++-+....+-|
T Consensus       127 k~lv~~~e~~~KI~AA~~ar~~~df~IiART---------------------------DA~~~~gldeAi~Ra~aY~eAG  179 (292)
T PRK11320        127 KEIVSQEEMVDRIKAAVDARTDPDFVIMART---------------------------DALAVEGLDAAIERAQAYVEAG  179 (292)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC---------------------------CCCCCCCHHHHHHHHHHHHHCC
T ss_conf             5333499999999999985679985999953---------------------------6334588699999999999779


Q ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHHHHCCCC----------CHHHHHHHHHHHHHHHCCC
Q ss_conf             987995531145899999996249989999346189---999999988897----------8899999999999772699
Q gi|255764463|r  254 ADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEY---AMIKAASLQGWI----------NKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       254 AD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEY---ami~~a~~~g~~----------d~~~~~~E~l~~~kRAGAd  320 (337)
                      ||+++| +|+...+-++.+.+.+..|+.+-.+.|--   --.+-..+.|+=          ---+++.+.+..+++.|-.
T Consensus       180 AD~if~-ea~~~~ee~~~~~~~~~~Pll~n~~e~g~tP~~s~~el~~lG~~~viyp~~~lraa~~Am~~~~~~l~~~G~~  258 (292)
T PRK11320        180 ADMIFP-EAITELDMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAENVYEAIRRDGTQ  258 (292)
T ss_pred             CCEEEC-CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             989941-7899999999999977999899848999998879999997799899988699999999999999999981994


No 19 
>PRK07094 biotin synthase; Provisional
Probab=94.93  E-value=0.4  Score=28.79  Aligned_cols=101  Identities=24%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      ...||+|.+.+++.++++.+.|++.|.|-.+..+.          .+...++..|+.||+. +++.|    ||+      
T Consensus        65 ~~rY~Ls~eeI~~~A~~a~~~G~~~~~lqsG~~~~----------~~~e~~~~ii~~Ik~~-~~l~i----~lS------  123 (323)
T PRK07094         65 IKRYRLSPEEILECAKKAYELGYGTIVLQSGEDPY----------YTDEKIADIIKEIKKE-LDVAI----TLS------  123 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC----------CCHHHHHHHHHHHHHC-CCCEE----EEE------
T ss_conf             77437999999999999998699889996489988----------6699999999998605-99459----975------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE---------------EECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             310013654462899999999999999628973---------------524667677999999999877885
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGADI---------------IAPSEMMDGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi---------------vAPSdMMDGrV~aIR~~Ld~~g~~  196 (337)
                       .|.+.             .+++..+.+||+|-               |.|..--+.|+..||.+ -+.|+.
T Consensus       124 -lG~l~-------------~e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~-k~~G~~  180 (323)
T PRK07094        124 -LGERS-------------YEEYKAWKEAGADRYLLRHETADRELYEKLHPGMSFENRIQCLKDL-KELGYE  180 (323)
T ss_pred             -CCCCC-------------HHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHH-HHCCCC
T ss_conf             -78799-------------9999999985977441245656989867758999989999999999-983981


No 20 
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.88  E-value=0.27  Score=29.94  Aligned_cols=230  Identities=20%  Similarity=0.196  Sum_probs=125.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf             87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH  138 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h  138 (337)
                      +-|...|+-|.+-..++.+.+.||.-|-+|=    .+         |.-.=+..+++.+|+.-    ..+..|+| ||..
T Consensus        88 ~vGy~~ypd~vv~~fv~~~~~~GidifRiFD----~L---------Ndv~nm~~~~~~v~~~G----~~~e~~i~-yt~s  149 (580)
T PRK09282         88 LLGYRHYADDVVEKFVEKAAENGIDVFRIFD----AL---------NDVRNMETAIKAVKKVG----AHAQGTIS-YTTS  149 (580)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE----CC---------CCHHHHHHHHHHHHHCC----CEEEEEEE-EECC
T ss_conf             2564458868999999999976997899740----12---------32577899999998459----87999999-7158


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC--------CCHHHHHHHHHHHC----CC--CCCCEECHH
Q ss_conf             43100136544628999999999999996289735246676--------77999999999877----88--577300336
Q gi|255764463|r  139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM--------DGRVQEIRKKLDSH----GH--INVGIMPYV  204 (337)
Q Consensus       139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM--------DGrV~aIR~~Ld~~----g~--~~~~ImsYs  204 (337)
                      -            --|++.+.+.|-...++|||++|=-||-        ---|.++|+.+|--    .+  ...++++|-
T Consensus       150 P------------~ht~~yy~~~a~~l~~~G~d~i~iKDmaGll~P~~a~~LV~alk~~~~lpI~~HtH~t~G~~~a~~l  217 (580)
T PRK09282        150 P------------VHTLETWVDLAKQLEEMGCDSICIKDMAGLLTPYAAYELVSALKKEVDLPVHLHCHATTGLATMTYL  217 (580)
T ss_pred             C------------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf             8------------7638999999999997499889972665578989999999999986198169982477647999999


Q ss_pred             HHHHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC------
Q ss_conf             664354301016753102-4467777443157211478898888766408987995531145899999996249------
Q gi|255764463|r  205 AKFNSSFYGPYRDAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG------  277 (337)
Q Consensus       205 aKfaS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~------  277 (337)
                      +   -.==|  =|.++.+ ..+.|  -|=|=+...--.+++....|  -|-|+=.+.+.-.|+.-++..-..|.      
T Consensus       218 ~---A~eAG--vdivD~a~~~~s~--gtsqP~~~~~v~~l~~~~~~--~~ld~~~l~~~~~y~~~vr~~y~~~e~~~~~~  288 (580)
T PRK09282        218 K---AVEAG--VDILDTAISSMSM--GTSHPPTETVVAALQGTPYD--TGLDLELLEEIAAYFREVRKKYAKFEGELKGV  288 (580)
T ss_pred             H---HHHHC--CCEEEECCCCCCC--CCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9---99848--8867001355348--87898799999987348989--89899999999999999999853278666668


Q ss_pred             -CCEEEEECC-HHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHH
Q ss_conf             -989999346-1899999-99988897889999999999977269999-82018
Q gi|255764463|r  278 -LPTFAYQVS-GEYAMIK-AASLQGWINKNDAMMESLLAFKRAGCDGI-FTYFA  327 (337)
Q Consensus       278 -~P~~aYqVS-GEYami~-~a~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A  327 (337)
                       .-+.-+|+- |-|+-++ .+.+.|+.|.=.-+++-.--.++-.-+.+ +|=+.
T Consensus       289 d~~v~~hq~PGG~~snl~~Ql~~~g~~dr~~eV~~e~~~V~~~lG~~~~VTP~S  342 (580)
T PRK09282        289 DSRVLVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS  342 (580)
T ss_pred             CHHHEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCHH
T ss_conf             953565148820667799999976847569999999999999759986128499


No 21 
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.67  E-value=0.34  Score=29.34  Aligned_cols=227  Identities=19%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH-C
Q ss_conf             878632889999999999998889367633025633455445421576537999999999730144798613327100-1
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT-I  137 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT-~  137 (337)
                      ..|...++-|.+-..++...+.||.-|-+|-.    +-|         -.-+.++++.+|+.-.    .+-+|+| || +
T Consensus        96 ~vgy~~ypddvv~~fv~~~~~~GidvfriFD~----LNd---------~~n~~~ai~~vk~~G~----~~~~~i~-yt~s  157 (468)
T PRK12581         96 LLGYRHYADDIVDKFISLSAQNGIDVFRIFDA----LND---------PRNIQQALRAVKKTGK----EAQLCIA-YTTS  157 (468)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC----CCC---------HHHHHHHHHHHHHCCC----EEEEEEE-ECCC
T ss_conf             20114588289999999999759987997314----676---------7899999999996387----4899999-6689


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHCCCCCCCEECH------
Q ss_conf             1431001365446289999999999999962897352466767--------79999999998778857730033------
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSHGHINVGIMPY------  203 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~g~~~~~ImsY------  203 (337)
                      .-             .|++.+.+.|....++|||.|+=-||--        -.|.+||+.      .+++|-=+      
T Consensus       158 p~-------------ht~~yy~~~ak~l~~~Gad~I~iKDmaGlL~P~~a~~LV~~lK~~------~~iPI~~HtH~t~G  218 (468)
T PRK12581        158 PV-------------HTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM------TNLPLIVHTHATSG  218 (468)
T ss_pred             CC-------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCC
T ss_conf             75-------------549999999999997399989984787776889999999999836------79865998258875


Q ss_pred             ---HHHHHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HC
Q ss_conf             ---6664354301016753102-4467777443157211478898888766408987995531145899999996---24
Q gi|255764463|r  204 ---VAKFNSSFYGPYRDAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KF  276 (337)
Q Consensus       204 ---saKfaS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~  276 (337)
                         ++=.+-.==|  =|.++.+ ..+.|  -|=|=+...--.++++...|.  |-|.-.+.+.-.|+.-+++--.   .+
T Consensus       219 la~a~~laAieAG--aDiVD~Ai~~~s~--gtSqP~~~s~v~~l~~~~~~~--~ld~~~l~~~~~y~~~vr~~y~~~~~~  292 (468)
T PRK12581        219 ISQMTYLAAVEAG--ADRIDTALSPFSE--GTSQPATESMYLALKEAGYDI--TLDETLLEQAANHLRQARQKYLADGIL  292 (468)
T ss_pred             HHHHHHHHHHHCC--CCEEEECCCCCCC--CCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             4999999999819--9999744645357--988866999999973389887--668899999999999999987423557


Q ss_pred             -------CCCEEEEECCH-HHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHHH
Q ss_conf             -------99899993461-8999999-9988897889999999999977269999-820189
Q gi|255764463|r  277 -------GLPTFAYQVSG-EYAMIKA-ASLQGWINKNDAMMESLLAFKRAGCDGI-FTYFAM  328 (337)
Q Consensus       277 -------~~P~~aYqVSG-EYami~~-a~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A~  328 (337)
                             +.-+..+|+-| -|+-++. +.+.|..|.=.-++|-.--.++-.-+.+ +|=+.+
T Consensus       293 ~~~~~~~d~~v~~hqiPGGm~sNl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~~~VTPsSQ  354 (468)
T PRK12581        293 DPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYPPLVTPLSQ  354 (468)
T ss_pred             CCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCHHH
T ss_conf             86556788145316682347888999999778364599999999999996699983697549


No 22 
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=94.53  E-value=0.37  Score=29.03  Aligned_cols=228  Identities=16%  Similarity=0.196  Sum_probs=129.3

Q ss_pred             CCCCCCCCCCHHHHHHHH-HHHHHCCCCEEE--EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEECCC
Q ss_conf             888786328899999999-999988893676--33025633455445421576537999999999730--1447986133
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKI-KQVADLGIPAIA--IFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI--PNIGIITDVA  131 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~ei-e~~~~lGI~av~--LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f--pdl~vi~DVc  131 (337)
                      ..-|...-++--.++++| ++-++.|-.-|-  -|+.....++...-.+-  -.-+...|++.-|+.-  .+..|..++-
T Consensus        31 ~~~~E~lNl~~Pe~V~~IH~~Yi~AGAdvI~TNTFgAn~~~L~~~gle~~--v~eIN~aav~lAreAa~g~~~~VAGsIG  108 (608)
T PRK08645         31 DTCFEELNLSHPELILRIHREYIEAGADVIQTNTYGANRIKLARYGLEDK--VKEINQAAVRLAKEAAEGKDTYILGTIG  108 (608)
T ss_pred             CCCCHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCHHH--HHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             99967987388699999999999961999981787167999987384889--9999999999999981799849999538


Q ss_pred             CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCEEC-HHHHHHH
Q ss_conf             271001143100136544628999999999999996289735246676779999999998778-85773003-3666435
Q gi|255764463|r  132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG-HINVGIMP-YVAKFNS  209 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g-~~~~~Ims-YsaKfaS  209 (337)
                        |.+     +....+.++.|+-.+.+.+|+..+.++|+|.+----|.|-.  .++.++.... ..+.+|+. .|.    
T Consensus       109 --P~~-----~~~~~~~~~~~e~~~~f~eQ~~~L~e~GvD~illET~~dl~--E~~~Al~aar~~~~lPvi~s~t~----  175 (608)
T PRK08645        109 --PIR-----GDGPQGDLSLEEILEEFREQIDALLEEGVDGLLLETFYDLE--ELLEALKAARKKTDLPIIAQVAF----  175 (608)
T ss_pred             --CCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCHH--HHHHHHHHHHHHCCCCEEEEEEE----
T ss_conf             --878-----89999999999999999999999975799899986305999--99999999997569979999998----


Q ss_pred             HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH-H--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             430101675310244677774431572114788988887664089879955311-4--5899999996249989999346
Q gi|255764463|r  210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL-P--YLDVCFRIKEKFGLPTFAYQVS  286 (337)
Q Consensus       210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~-~--yLDii~~~k~~~~~P~~aYqVS  286 (337)
                                        +...+-++-....+++.+..   .-|||.+.+--+. |  -+..++.++..++.|+.+|-=+
T Consensus       176 ------------------~~~G~t~~G~~~~~a~~~l~---~~gad~VG~NC~~GP~~m~~~l~~l~~~~~~pl~v~PNA  234 (608)
T PRK08645        176 ------------------HEDGVTQNGTSLEEALKQLV---ALGADVVGLNCGLGPYHMLEALKRIELPADAPLSAYPNA  234 (608)
T ss_pred             ------------------CCCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             ------------------89980899997999999986---289988988797899999999999874259818997889


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             189999999988897889999999999977269999
Q gi|255764463|r  287 GEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGI  322 (337)
Q Consensus       287 GEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~I  322 (337)
                      |-=...-  .+.-+-...+-+-+...-|...||++|
T Consensus       235 GlP~~~~--gr~~Y~~tPe~Fa~~a~~~~~~Ga~iI  268 (608)
T PRK08645        235 GLPEYVE--GRYVYSANPEYFAEYAREFVEEGVRLI  268 (608)
T ss_pred             CCCCCCC--CEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             9988789--830278999999999999998599799


No 23 
>PRK08444 hypothetical protein; Provisional
Probab=94.44  E-value=0.23  Score=30.43  Aligned_cols=241  Identities=15%  Similarity=0.079  Sum_probs=124.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             88786328899999999999988893676330256334554454215765379999999997301447986133271001
Q gi|255764463|r   58 SMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        58 SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      .=|+-|.+|.+.+++.++++.+.|++-|.+=+++.++.+-+          .....+|.||+.||++.|      ..||.
T Consensus        73 ~~~~aY~ls~eei~~~~~ea~~~G~tev~i~GG~~P~~~~e----------yY~~l~r~ik~~~P~i~i------~aft~  136 (353)
T PRK08444         73 KNPNPYTMSHEEILEIVKESVKRGIKEVHIVSAHNPNYGYQ----------WYLEIFKMIKEAYPNLHV------KAMTA  136 (353)
T ss_pred             CCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCEEE------EECCH
T ss_conf             99987666999999999999975987899814759899758----------899999999985885047------71778


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHCCC--------CEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECHH--H
Q ss_conf             14310013654462899999999999-9996289--------735246676779-9999999987788577300336--6
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAV-IQADAGA--------DIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPYV--A  205 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al-~~A~AGa--------DivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsYs--a  205 (337)
                      ---+-+-.-..+.-.+.+..|-+.-+ +.--.||        ++|||.-.-.-+ +..+|.+ -+.|..-+.-|=|.  -
T Consensus       137 ~EI~~~a~~~~~s~~evL~~Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~A-H~lGi~ttaTmmyGhvE  215 (353)
T PRK08444        137 AEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYW-HKKGKQSNATMLFGHIE  215 (353)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHH-HHCCCCCCEEEECCCCC
T ss_conf             99999999809999999999998198757898720037778976189989999999999999-98299664146778879


Q ss_pred             HHHH--HHHCCHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHHHHHC-CC
Q ss_conf             6435--430101675310244677-7744315721147889888876640898799553114---589999999624-99
Q gi|255764463|r  206 KFNS--SFYGPYRDAISTRDLLKG-DKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP---YLDVCFRIKEKF-GL  278 (337)
Q Consensus       206 KfaS--~fYgPFRdA~~S~p~~~g-dr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~---yLDii~~~k~~~-~~  278 (337)
                      .+.-  .-.--.|+.-+-+..|.- ---+||-+.  ...                -++|...   ||-++.-.|=-+ ++
T Consensus       216 t~e~rv~HL~~lR~lQd~tgGF~~FIPl~f~~~~--t~l----------------~~~~~~t~~e~Lr~~AisRl~Ldni  277 (353)
T PRK08444        216 NREHRIDHMLRLRDLQDKTGGFNAFIPLVYQREN--NYL----------------KVEKFPSSQEILKTIAISRILLDNI  277 (353)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCC----------------CCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999836557983589765657899--857----------------7789999899999999999986387


Q ss_pred             -CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             -89999346189999999988897889999999999977269999820189999998
Q gi|255764463|r  279 -PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       279 -P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                       -+-+|.|.=--.+-+.|-..|.=|....++|--+ .+-|||..--.--..++.+..
T Consensus       278 ~~IqasWv~~G~~~aq~aL~~GanDlggT~~eE~i-~~~aGa~~~~~~~~~~l~~~I  333 (353)
T PRK08444        278 PHIKAYWATLTLNLALVAQEFGANDLDGTIEKESI-QSAAGAKSAHGLSKEDFIFLI  333 (353)
T ss_pred             CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCE-ECCCCCCCCCCCCHHHHHHHH
T ss_conf             86154456237899999996699677555554524-421258998889999999999


No 24 
>PRK05927 hypothetical protein; Provisional
Probab=94.43  E-value=0.14  Score=31.92  Aligned_cols=205  Identities=15%  Similarity=0.153  Sum_probs=111.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      +.=|+-|.+|.|.+++.++++.+.|++-|.+=+++.+++.-          ......+|.||+.||++.|=+      ||
T Consensus        68 ~~~~~ay~ls~eei~~~~~e~~~~G~tEv~i~GG~~P~l~~----------eyy~~l~r~ik~~~P~i~iha------fs  131 (350)
T PRK05927         68 PRSSDAYLLSFDEFRSLMQRYVSSGVKTVLLQGGVHPQLGI----------DYLEELVRITVQEFPSLHPHF------FS  131 (350)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH----------HHHHHHHHHHHHHCCCCCCCC------CC
T ss_conf             99987532799999999999986698389982688999986----------999999999997488866566------99


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCE--------EEC-----------------------CCCCCCHHH
Q ss_conf             1143100136544628999999999999-99628973--------524-----------------------667677999
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVI-QADAGADI--------IAP-----------------------SEMMDGRVQ  184 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~-~A~AGaDi--------vAP-----------------------SdMMDGrV~  184 (337)
                      .---+-+-.-..+.-++.++.|.+..+- .--.||.|        |||                       +-||=|.|.
T Consensus       132 ~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~AH~lGi~ttaTmlyGhiE  211 (350)
T PRK05927        132 AVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKLAHRLGFRSTATMMFGHVE  211 (350)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf             99999999885999999999999737676899875016877775148888899999999999998599752024636879


Q ss_pred             ----------HHHHHHHHCC-CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             ----------9999998778-85773003366643543010167531024467777443157211478898888766408
Q gi|255764463|r  185 ----------EIRKKLDSHG-HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       185 ----------aIR~~Ld~~g-~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                                .||+.=|+.| |+....++|                             |  |.|....-     ...++
T Consensus       212 t~e~ri~HL~~lR~lQdeTgGF~~FIpl~F-----------------------------~--p~nt~l~~-----~~~~~  255 (350)
T PRK05927        212 NPEDILLHLQTLRDAQDENPGFYSFIPWSY-----------------------------K--PGNTALGR-----RVPQQ  255 (350)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEEEECCC-----------------------------C--CCCCHHHH-----CCCCC
T ss_conf             999999999999998765098799994676-----------------------------5--48874654-----27889


Q ss_pred             CCEEEECCCHHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             98799553114589999999624-998-99993461899999999888978899999999999772699
Q gi|255764463|r  254 ADMLLVKPGLPYLDVCFRIKEKF-GLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       254 AD~lMVKPa~~yLDii~~~k~~~-~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd  320 (337)
                      +      ++--||-++.-.|=-. +.| +-||.|.=--.+-+.|-..|.=|....++|--+ .+-||+.
T Consensus       256 ~------~~~~~Lr~~AvaRl~Ldn~~hIqa~Wv~~G~~~aq~aL~~GanDlgGT~~eE~I-~~aaG~~  317 (350)
T PRK05927        256 A------SPELYYRILALARIFLDNFDHIAASWFGEGKEEGAKGLHYGADDFGGTILDESV-HKCTGWD  317 (350)
T ss_pred             C------CHHHHHHHHHHHHHHCCCCCCEEECEEECCHHHHHHHHHCCCCCCCCCCEEEEE-ECCCCCC
T ss_conf             9------845759999999997069886372405257999999996699767655300046-4322899


No 25 
>PRK09234 fbiC FO synthase; Reviewed
Probab=94.37  E-value=0.17  Score=31.37  Aligned_cols=104  Identities=23%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHHHHHHHH
Q ss_conf             730033666435430101675310244677774431572114788988887664089879955-------3114589999
Q gi|255764463|r  198 VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLPYLDVCF  270 (337)
Q Consensus       198 ~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~yLDii~  270 (337)
                      |.|-.+..|||+- |         .  -+||-..|-|++   .|-.+.+..-.+.||.-|.+-       |+-.|+|+++
T Consensus       537 TNVC~~~C~FCAF-~---------r--~~~~~~aY~ls~---eeI~~r~~EA~~~GaTEV~iqGGihP~l~~~~Y~di~r  601 (846)
T PRK09234        537 TNICYTGCRFCAF-A---------Q--RKGDADAYSLSL---DEVADRAWEAWVAGATEVCMQGGIDPELPGTGYADLVR  601 (846)
T ss_pred             HHHHHCCCCCCCC-C---------C--CCCCCCCEECCH---HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             8775517973514-4---------7--889987611899---99999999999769879983478798998789999999


Q ss_pred             HHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             999624-998999934618999999998889788999999999997726999982
Q gi|255764463|r  271 RIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       271 ~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      .+|+.+ .+-+-||.-.    -|.+.++.--+    .+.|.|..+|-||-|-+=-
T Consensus       602 ~iK~~~P~ihihAFSp~----EI~~~A~~~g~----s~~E~L~~LkeAGL~SlPG  648 (846)
T PRK09234        602 AVKARVPSMHVHAFSPM----EIANGATRSGL----SIREWLTALREAGLDTIPG  648 (846)
T ss_pred             HHHHHCCCCEEECCCHH----HHHHHHHHCCC----CHHHHHHHHHHCCCCCCCC
T ss_conf             99986898704508999----99999998299----9999999999809777999


No 26 
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.28  E-value=0.46  Score=28.41  Aligned_cols=259  Identities=19%  Similarity=0.156  Sum_probs=132.3

Q ss_pred             CCCCCCCHHHHH-HHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             563128988999-8634778887733116667589881104888786328899999999999988893676330256334
Q gi|255764463|r   17 MRRNRKSNWIRE-MVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDL   95 (337)
Q Consensus        17 ~RRlR~~~~iR~-Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~   95 (337)
                      +|-|+.++|-|= .+++..  |+-.+|  ++.-|.|       +-|...|+-|.+-+.++.+.+.||.-|-+|-    .+
T Consensus        56 ~Rfl~EdPWerLr~lr~~~--pnt~lQ--mLlRG~N-------~vGy~~ypddvv~~fv~~~~~~GidifRiFD----aL  120 (499)
T PRK12330         56 IRFLNEDPWERLRTFRKLM--PNSKLQ--MLLRGQN-------LLGYRHYEDEVVDRFVEKSAENGMDVFRVFD----AL  120 (499)
T ss_pred             HHHHCCCHHHHHHHHHHHC--CCCCEE--EEECCCC-------CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC----CC
T ss_conf             9874769899999999867--797323--1313355-------0564258879999999999976998899724----44


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             55445421576537999999999730144798613327100-11431001365446289999999999999962897352
Q gi|255764463|r   96 RNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT-IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA  174 (337)
Q Consensus        96 Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT-~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA  174 (337)
                               |.-.=+..+++.+|+.-.    .+-.|+| || +.-             -|++.+.++|....++|||.||
T Consensus       121 ---------Ndv~Nm~~ai~~vk~~G~----~~q~~i~-yt~sPv-------------ht~~yy~~~ak~l~~~G~d~i~  173 (499)
T PRK12330        121 ---------NDLRNLETSIKAVKKTGK----HAQGTIC-YTVSPI-------------HTTEGFVEQAKRLLDMGCDSIC  173 (499)
T ss_pred             ---------CCHHHHHHHHHHHHHCCC----EEEEEEE-EECCCC-------------CCHHHHHHHHHHHHHCCCCEEE
T ss_conf             ---------457778999999997188----5899999-605887-------------7899999999999975999899


Q ss_pred             CCCCCC--------CHHHHHHHHH--H----HCCC--CCCCEECHHHHHHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCC
Q ss_conf             466767--------7999999999--8----7788--577300336664354301016753102-446777744315721
Q gi|255764463|r  175 PSEMMD--------GRVQEIRKKL--D----SHGH--INVGIMPYVAKFNSSFYGPYRDAISTR-DLLKGDKKTYYLDPA  237 (337)
Q Consensus       175 PSdMMD--------GrV~aIR~~L--d----~~g~--~~~~ImsYsaKfaS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~  237 (337)
                      =-||=-        --|++||+++  |    -|.+  ...++++|-+   -.==|-  |.++.+ ..+.|  -+=|=+..
T Consensus       174 IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~---AieAGv--DivD~A~~~~s~--gtsqp~~~  246 (499)
T PRK12330        174 IKDMAALLKPQPAYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMK---AIEAGV--DVVDTAISSMSL--GPGHNPTE  246 (499)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH---HHHCCC--CEECCCCCCCCC--CCCCCCHH
T ss_conf             84753467889999999999986389983798517887469999999---998499--887244543237--98899799


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-------CCEEEEECCH-HHH-HHHHHHHCCCCC-HHHHH
Q ss_conf             1478898888766408987995531145899999996249-------9899993461-899-999999888978-89999
Q gi|255764463|r  238 NVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG-------LPTFAYQVSG-EYA-MIKAASLQGWIN-KNDAM  307 (337)
Q Consensus       238 n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~-------~P~~aYqVSG-EYa-mi~~a~~~g~~d-~~~~~  307 (337)
                      .--.+++....|.  |-|+-.+.+.-.|+.-|+..-..|.       .-+..+|+-| -|+ +...+.++|..| +++++
T Consensus       247 s~va~L~~t~~d~--~ld~~~l~~i~~y~~~vr~~Y~~fe~~~~~~d~~v~~~q~PGGm~sNl~~Ql~~~g~~dr~~eVl  324 (499)
T PRK12330        247 SLVEMLEGTGYTT--KLDMDRLLKIKDHFAKVRPRYKEFLSKITGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMKEVL  324 (499)
T ss_pred             HHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999985789889--97999999999999999999975046676788635038895668999999999778476799999


Q ss_pred             HHHHHHHHHHCCCEEEECH
Q ss_conf             9999999772699998201
Q gi|255764463|r  308 MESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       308 ~E~l~~~kRAGAd~IitY~  326 (337)
                      -|.-..-+.-|-=..+|=+
T Consensus       325 ~e~~~Vr~~lG~p~lVTP~  343 (499)
T PRK12330        325 EEVPRVRKDAGYPPLVTPS  343 (499)
T ss_pred             HHHHHHHHHCCCCCEECCH
T ss_conf             9999999966998646838


No 27 
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=94.24  E-value=0.35  Score=29.24  Aligned_cols=145  Identities=23%  Similarity=0.245  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf             89999999999999962897352466767799999999987788577300336664354301016753102446777744
Q gi|255764463|r  152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKT  231 (337)
Q Consensus       152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~s  231 (337)
                      -.|.+.+++++-.++..|.|+|-                |.++..+-+-+.+.-.+.-+     .+|+.-+-.-.|-|+-
T Consensus       152 Gls~~~~a~~~~e~~~GGvDfiK----------------DDE~l~~q~~~p~~eRv~~~-----~~ai~~a~~eTG~~~~  210 (411)
T PRK09549        152 GRDIGYLKEQLRDQAIGGVDIVK----------------DDEILFENALTPLEKRIVSG-----KEVLQEVYETTGHKTL  210 (411)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCE
T ss_conf             89989999999998645865145----------------86456797778899999999-----9999999998588665


Q ss_pred             CCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH--HCCCCEEE-EECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             31572114-78898888766408987995531145899999996--24998999-9346189999999988897889999
Q gi|255764463|r  232 YYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE--KFGLPTFA-YQVSGEYAMIKAASLQGWINKNDAM  307 (337)
Q Consensus       232 YQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~--~~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~~  307 (337)
                      |-.|.... .|-++-+..=.+.|++++||-+...=++.++.+++  .+.+|+.+ ...+|-|.  . .-..|+ +.. ++
T Consensus       211 ya~NiT~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~~~~~L~~~~~~~lpI~aHrA~~ga~t--r-~p~~Gi-s~~-~~  285 (411)
T PRK09549        211 YAVNLTGRTFELKENAKRAVELGADALLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYT--A-SKLYGI-SSP-LL  285 (411)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCEEE--C-CCCCCC-CHH-HH
T ss_conf             998658897999999999998599889996553639999999847788946763135441220--4-865651-299-99


Q ss_pred             HHHHHHHHHHCCCEEEE
Q ss_conf             99999997726999982
Q gi|255764463|r  308 MESLLAFKRAGCDGIFT  324 (337)
Q Consensus       308 ~E~l~~~kRAGAd~Iit  324 (337)
                      +  -.-.+-||||.++.
T Consensus       286 l--~KL~RLaGaD~~~~  300 (411)
T PRK09549        286 L--GKLLRYAGADFSLF  300 (411)
T ss_pred             H--HHHHHHHCCCEEEC
T ss_conf             9--99999908884432


No 28 
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=94.22  E-value=0.59  Score=27.70  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             4798613327100114310013654462899999999999999628973524
Q gi|255764463|r  124 IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       124 l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      |-|+.-+-|-|.+.|---|.-..|+  +++.-..|-+.|..+.+|||..|--
T Consensus       132 IPV~gHiGL~PQ~~~~~GG~r~qGk--~~~ea~~l~~dA~~le~AGa~~ivl  181 (261)
T pfam02548       132 IPVMGHIGLTPQSVNQLGGYKVQGR--TEEEAEQLLEDAKALEEAGAFALVL  181 (261)
T ss_pred             CCEEEEECCCCHHCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9765342367401123688510259--9999999999999998468748999


No 29 
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244    This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=94.19  E-value=0.09  Score=33.20  Aligned_cols=146  Identities=24%  Similarity=0.314  Sum_probs=87.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEECCCCCHHH
Q ss_conf             786328899999999999988893676330256334554454215765379999999997301---44798613327100
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP---NIGIITDVALDPFT  136 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp---dl~vi~DVcLc~YT  136 (337)
                      ++=|-+|.|++.+.++++.+.|++-|+|=|+..|+.|-+-.|-.     ..-.-+|+||.+||   ++-|=+      +|
T Consensus        31 ~~~Y~Ls~eEI~~Kv~ea~~~G~tE~~iQGGlnP~~~~nGssl~-----yy~~l~~~Ik~~~pPyG~~hiHa------fS   99 (331)
T TIGR00423        31 KDAYVLSLEEILRKVKEAVAKGATEICIQGGLNPQLDINGSSLE-----YYEELFRAIKQEFPPYGDVHIHA------FS   99 (331)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH-----HHHHHHHHHHHCCCCCCCEEEEC------CC
T ss_conf             88814077999999999997198278852342788764541499-----99999999974178965247614------68


Q ss_pred             CCCCCCCC-CCCCCCH-HHHHHHHHHHHHH-HHHCCC--------CEEEC-----------------------CCCCCCH
Q ss_conf             11431001-3654462-8999999999999-996289--------73524-----------------------6676779
Q gi|255764463|r  137 IHGHDGIL-CDGEIVN-DETIELISHAAVI-QADAGA--------DIIAP-----------------------SEMMDGR  182 (337)
Q Consensus       137 ~hGHcGi~-~~g~IdN-D~Tl~~L~k~Al~-~A~AGa--------DivAP-----------------------SdMMDGr  182 (337)
                      .-==. .+ ++....- .+-|+.|-+.-|. .==.||        ++|||                       +-||=|.
T Consensus       100 p~Ev~-f~A~~~~~~~e~EvL~~LK~aGL~SmPGtgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~~GiptTATMMfGH  178 (331)
T TIGR00423       100 PMEVY-FLAKNEGLSIEKEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGH  178 (331)
T ss_pred             HHHHH-HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCC
T ss_conf             68999-99986189788999999888503567776226530335875477988727899999999866696210112355


Q ss_pred             HH----------HHHHH------HHHCC-CCCCCEECHHHHHHH-HHHCCHHH
Q ss_conf             99----------99999------98778-857730033666435-43010167
Q gi|255764463|r  183 VQ----------EIRKK------LDSHG-HINVGIMPYVAKFNS-SFYGPYRD  217 (337)
Q Consensus       183 V~----------aIR~~------Ld~~g-~~~~~ImsYsaKfaS-~fYgPFRd  217 (337)
                      |.          -||+-      =++.| |+.---|+|--+.+- ..+++.|+
T Consensus       179 ve~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~  231 (331)
T TIGR00423       179 VEEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRK  231 (331)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             27678899999999875170023352277321014677888777111400237


No 30 
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=93.93  E-value=0.12  Score=32.32  Aligned_cols=138  Identities=20%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf             99999999730144798613327100114310013654462899999999999999628973524667677999999999
Q gi|255764463|r  111 NEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKL  190 (337)
Q Consensus       111 ~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~L  190 (337)
                      .++|++||+.|||-.|++|.=           .++.|.           --+-..++||||+|.=+.-.|-.  .|++++
T Consensus       214 ~~aV~~iRe~fPd~~IvADlK-----------TmDaG~-----------lEa~mAa~AGADivtVlG~A~~s--TI~~ai  269 (392)
T PRK13307        214 LEVISKIREVRPDAFIVADLK-----------TLDTGN-----------LEARMAADATADAVVISGLAPIS--TIEKAI  269 (392)
T ss_pred             HHHHHHHHHHCCCCEEEEEEE-----------CCCCCH-----------HHHHHHHHCCCCEEEEECCCCHH--HHHHHH
T ss_conf             899999998789988998542-----------035426-----------88888887599889995679878--999999


Q ss_pred             HHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-------H
Q ss_conf             877885773003366643543010167531024467777443157211478898888766408987995531-------1
Q gi|255764463|r  191 DSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG-------L  263 (337)
Q Consensus       191 d~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~  263 (337)
                      .+..-..+.+|-                         |    -++..|.-+-.+|.    +-|.|++-+--|       .
T Consensus       270 keA~k~G~~v~v-------------------------D----lInV~dpv~ra~eL----klg~DiI~lH~giD~Q~~~~  316 (392)
T PRK13307        270 HEAQKTGIYSIL-------------------------D----MLNVEDPVKLLESL----KVKPDVVELHRGIDEEGTEH  316 (392)
T ss_pred             HHHHHCCCEEEE-------------------------E----ECCCCCHHHHHHHH----CCCCCEEEEEECCCHHHCCC
T ss_conf             999970979999-------------------------8----34788889999984----44698899985412640368


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             45899999996249989999346189999999988897889999999999977269999820
Q gi|255764463|r  264 PYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       264 ~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      +..|+.+..+..-+.|+++               +|-++.     |+.-....+|||++|-=
T Consensus       317 ~~~~l~~i~~~~~~~~VAV---------------AGGI~~-----et~~~~~~~gadIvIVG  358 (392)
T PRK13307        317 AWGNIPEIKKAAGKILVAV---------------AGGVRV-----EKVEEALKAGADILVVG  358 (392)
T ss_pred             CHHHHHHHHHHCCCEEEEE---------------ECCCCH-----HHHHHHHHCCCCEEEEC
T ss_conf             7456999997426805999---------------778888-----88999984699899989


No 31 
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=93.81  E-value=0.53  Score=28.00  Aligned_cols=144  Identities=20%  Similarity=0.277  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf             89999999999999962897352466767799999999987788577300336664354301016753102446777744
Q gi|255764463|r  152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKT  231 (337)
Q Consensus       152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~s  231 (337)
                      -.|.+.+++++-.++..|.|+|-                |.++..+-+-+.+.-.+.-+     .+|++-+..-.|-|+-
T Consensus       151 Gls~~~~a~~~~e~~~GG~DfIK----------------DDE~l~~q~~~p~~eRv~~~-----~~ai~~a~~eTG~~~~  209 (407)
T TIGR03332       151 GRDLGYLKEQLRQQALGGVDLVK----------------DDEILFETGLAPFEKRITEG-----KEVLQEVYEQTGHKTL  209 (407)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCE
T ss_conf             79989999999999605776242----------------75556798789899999999-----9999999998598546


Q ss_pred             CCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH--CCCCEEE-EECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             31572114-788988887664089879955311458999999962--4998999-9346189999999988897889999
Q gi|255764463|r  232 YYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK--FGLPTFA-YQVSGEYAMIKAASLQGWINKNDAM  307 (337)
Q Consensus       232 YQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~--~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~~  307 (337)
                      |-.|.... .|-++.+..=.+.|+.++||-|...=++.++.+++.  +.+|+.+ ...+|-|.   ..-..|+ +.. ++
T Consensus       210 ya~NiT~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~a~~~L~~~~~~~lpI~aHra~~ga~~---r~~~~Gi-s~~-~~  284 (407)
T TIGR03332       210 YAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYT---SSPFYGV-SHS-LL  284 (407)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEE---CCCCCCC-CHH-HH
T ss_conf             998538898999999999997599889995765559999999847898843887314433663---2777774-299-99


Q ss_pred             HHHHHHHHHHCCCEEE
Q ss_conf             9999999772699998
Q gi|255764463|r  308 MESLLAFKRAGCDGIF  323 (337)
Q Consensus       308 ~E~l~~~kRAGAd~Ii  323 (337)
                      +  -.-.+-||||.++
T Consensus       285 l--~Kl~RLaGaD~~~  298 (407)
T TIGR03332       285 L--GKLLRYAGADFSL  298 (407)
T ss_pred             H--HHHHHHCCCCEEE
T ss_conf             9--9999981989776


No 32 
>PRK06256 biotin synthase; Validated
Probab=93.75  E-value=0.72  Score=27.11  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=65.7

Q ss_pred             CCCCCC---CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf             878632---88999999999999888936763302563345544542157653799999999973014479861332710
Q gi|255764463|r   59 MPDVMR---MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF  135 (337)
Q Consensus        59 MPGv~R---~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y  135 (337)
                      =.++.+   .+.+.++++++.+.+.|++.|.|.-..    +++.+    .+-.-++.+|+.||+.++ +-    +|++  
T Consensus        81 ~~~~~~y~ll~~eeI~~~a~~a~~~G~~~~~lvtsg----~~~~~----~~~e~v~~~i~~Ik~~~~-l~----i~~s--  145 (325)
T PRK06256         81 SSPIYRYAWLDIEEIVEAAKEAIENGAGRFCIVASG----RGPSG----REVDQVIEAVKAIKEETD-LE----ICAC--  145 (325)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC----CCCCH----HHHHHHHHHHHHHHHCCC-EE----EEEE--
T ss_conf             899741278999999999999998699889998604----58976----789999999999862289-36----8873--


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--------------EECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             0114310013654462899999999999999628973--------------52466767799999999987788
Q gi|255764463|r  136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI--------------IAPSEMMDGRVQEIRKKLDSHGH  195 (337)
Q Consensus       136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--------------vAPSdMMDGrV~aIR~~Ld~~g~  195 (337)
                           .|++.             .+++..+.+||+|-              |+|+.--|-|+..+|.+ -+.|+
T Consensus       146 -----lG~l~-------------~e~~~~LkeAGvd~y~~nlETs~~~f~~i~~tht~~~Rl~ti~~a-~~aGi  200 (325)
T PRK06256        146 -----LGLLT-------------EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRVDTCEMV-KAAGI  200 (325)
T ss_pred             -----CCCCC-------------HHHHHHHHHCCCCEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHH-HHCCC
T ss_conf             -----48899-------------999999998699888666440687638868998899999999999-98599


No 33 
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.34  E-value=0.83  Score=26.66  Aligned_cols=101  Identities=19%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             EECCCCC-CCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             1048887-8632889999999999998-8893676330256334554454215765379999999997301447986133
Q gi|255764463|r   54 ESINSMP-DVMRMSIDVAVEKIKQVAD-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        54 ~~I~SMP-Gv~R~Sid~L~~eie~~~~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      --|.-|| |-|+.|.+..++-+.++++ .|..+|-|=++.  +               +...|+.|.+.  .|-||.-+-
T Consensus        80 ~vv~DmPf~sy~~s~~~a~~nA~rl~ke~gadaVKlEgg~--~---------------~~~~i~~l~~~--GIPV~gHiG  140 (266)
T PRK00311         80 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGE--E---------------LAETIRRLVER--GIPVMGHLG  140 (266)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC--C---------------HHHHHHHHHHC--CCCEEEEEC
T ss_conf             3995798764689999999999999985699989978883--3---------------67999999987--997665415


Q ss_pred             CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             27100114310013654462899999999999999628973524
Q gi|255764463|r  132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      |-|-+.+---|.-..|+  +.+..+.|-+.|..+.+|||..|--
T Consensus       141 L~PQ~~~~~GG~r~qGk--t~~ea~~l~~dA~~le~AGaf~ivl  182 (266)
T PRK00311        141 LTPQSVNVLGGYKVQGR--DEEAAEQLLEDAKALEEAGAFALVL  182 (266)
T ss_pred             CCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             76500113688602259--9999999999999998479549999


No 34 
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=93.31  E-value=0.84  Score=26.63  Aligned_cols=227  Identities=19%  Similarity=0.228  Sum_probs=122.0

Q ss_pred             CEEEECCCCCEEECCCCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             16667589881104888786328899999----99999998889367633025633455445421576537999999999
Q gi|255764463|r   43 PIFLTSGEKTVESINSMPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK  118 (337)
Q Consensus        43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK  118 (337)
                      +.||--..   -|+..++..-..+.+.+.    ++++-+.+-|+-.+++=  +=.+            -.=+..|++.+|
T Consensus       100 ~~~VAGsI---GP~~~~~~~~~~~~~e~~~~f~eQ~~~L~e~GvD~illE--T~~d------------l~E~~~Al~aar  162 (608)
T PRK08645        100 DTYILGTI---GPIRGDGPQGDLSLEEILEEFREQIDALLEEGVDGLLLE--TFYD------------LEELLEALKAAR  162 (608)
T ss_pred             CEEEEEEC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE--HHCC------------HHHHHHHHHHHH
T ss_conf             84999953---887889999999999999999999999975799899986--3059------------999999999999


Q ss_pred             HHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCHHHHHHHHHHHCCCC
Q ss_conf             7301447986133271001143100136544628999999999999996289735246676--77999999999877885
Q gi|255764463|r  119 KNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM--DGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       119 ~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM--DGrV~aIR~~Ld~~g~~  196 (337)
                      +.. ++-||+-+.+++      .|.+.+|     .+++   +.+......|+|+|.-..-.  +.....+++.   ....
T Consensus       163 ~~~-~lPvi~s~t~~~------~G~t~~G-----~~~~---~a~~~l~~~gad~VG~NC~~GP~~m~~~l~~l---~~~~  224 (608)
T PRK08645        163 KKT-DLPIIAQVAFHE------DGVTQNG-----TSLE---EALKQLVALGADVVGLNCGLGPYHMLEALKRI---ELPA  224 (608)
T ss_pred             HHC-CCCEEEEEEECC------CCCCCCC-----CCHH---HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH---HHHC
T ss_conf             756-997999999889------9808999-----9799---99999862899889887978999999999998---7425


Q ss_pred             CCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC
Q ss_conf             77300336664354301016753102446777744315721147889888876640898799553114589999999624
Q gi|255764463|r  197 NVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF  276 (337)
Q Consensus       197 ~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~  276 (337)
                      +.+|..|.-             + .-|...+.|-.|...|....+-.++.   +++||.+|====|. -=+-|+.+++..
T Consensus       225 ~~pl~v~PN-------------A-GlP~~~~gr~~Y~~tPe~Fa~~a~~~---~~~Ga~iIGGCCGT-TPeHIraia~al  286 (608)
T PRK08645        225 DAPLSAYPN-------------A-GLPEYVEGRYVYSANPEYFAEYAREF---VEEGVRLIGGCCGT-TPEHIRAMKEAL  286 (608)
T ss_pred             CCEEEEECC-------------C-CCCCCCCCEEECCCCHHHHHHHHHHH---HHCCCCEEEECCCC-CHHHHHHHHHHH
T ss_conf             981899788-------------9-99887898302789999999999999---98599799757799-999999999984


Q ss_pred             --CCCEEEEEC-------------CHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             --998999934-------------618999999998889-----------78899999999999772699998
Q gi|255764463|r  277 --GLPTFAYQV-------------SGEYAMIKAASLQGW-----------INKNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       277 --~~P~~aYqV-------------SGEYami~~a~~~g~-----------~d~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                        ..|+..-+|             ..+-.-+..-..++.           +|. +-++|--..+|.||+|.|-
T Consensus       287 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vEldpP~~~d~-~~~~~~a~~l~~~Gvdai~  358 (608)
T PRK08645        287 RGLKPVVEKEVIPIPKKEPFHPKPSKVKSSLLEKVKKKFTVIVELDPPKGLDT-DKFLEGARALKEAGVDAIT  358 (608)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEE
T ss_conf             47899775555666666667887766777589996379679999549999987-8999999999876997897


No 35 
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.30  E-value=0.85  Score=26.62  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             44798613327100114310013654462899999999999999628973524667677999999999877885773003
Q gi|255764463|r  123 NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       123 dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      .|-|+.-+-|-|-+.|---|.-..|+  +++.-..|-+.|..+.+|||..+---.+=.---+.|.+.      .++|..+
T Consensus       127 GIPV~gHiGLtPQ~~~~~Gg~k~qGk--~~~ea~~l~~dA~~le~AGaf~ivlE~vp~~la~~It~~------~~IPtIG  198 (254)
T cd06557         127 GIPVMGHIGLTPQSVNQLGGYKVQGK--TEEEAERLLEDALALEEAGAFALVLECVPAELAKEITEA------LSIPTIG  198 (254)
T ss_pred             CCCEEEEECCCCHHCCCCCCCEEECC--CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC------CCCCEEE
T ss_conf             99766541577401121687532249--999999999999999847955999956709999999857------8988894


Q ss_pred             H-HHHHHHHHHCCHHHHHHCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             3-66643543010167531024467-777443157211478898888766408
Q gi|255764463|r  203 Y-VAKFNSSFYGPYRDAISTRDLLK-GDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       203 Y-saKfaS~fYgPFRdA~~S~p~~~-gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                      - |.+++..=+==+-|.+|-.+.|. .-.|.|----....+|+++-..|+..|
T Consensus       199 IGAG~~cDGQvLV~~DlLG~~~~~~PkFvK~y~~~~~~~~~Av~~y~~dVk~~  251 (254)
T cd06557         199 IGAGPDCDGQVLVWHDMLGLSPGFKPKFVKRYADLGELIREAVKAYVEEVKSG  251 (254)
T ss_pred             CCCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             56789987037847464278989899639888637999999999999999759


No 36 
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=93.12  E-value=0.9  Score=26.44  Aligned_cols=96  Identities=25%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCC
Q ss_conf             99999999998889367633025633455445421576537999999999730144798613327100114310013654
Q gi|255764463|r   69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGE  148 (337)
Q Consensus        69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~  148 (337)
                      .-.+.++.+++.|+..+.    |+..    .|     ..--+..+|+.||+.||++-||+                  | 
T Consensus       223 ~~~eRa~~Lv~aGvDviv----IDtA----hG-----hs~~vi~~ik~ik~~~p~~~iIa------------------G-  270 (467)
T pfam00478       223 DDLERAEALVEAGVDVIV----IDSA----HG-----HSEYVLEMIKWIKKKYPDLDVIA------------------G-  270 (467)
T ss_pred             HHHHHHHHHHHCCCCEEE----EECC----CC-----CCHHHHHHHHHHHHCCCCCCEEE------------------E-
T ss_conf             599999999876998899----7344----54-----41889999999874078773785------------------1-


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEE----ECCCCCC---------CHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             4628999999999999996289735----2466767---------7999999999877885773003
Q gi|255764463|r  149 IVNDETIELISHAAVIQADAGADII----APSEMMD---------GRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       149 IdND~Tl~~L~k~Al~~A~AGaDiv----APSdMMD---------GrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                        |=.    -.++|..+.+||||.|    .|-.+--         .|..||-+.-+...-.+++|.+
T Consensus       271 --NVa----T~e~a~~Li~aGAD~vKVGiGpGSiCTTR~v~GvG~PQ~tAv~~~a~~a~~~~vpiIA  331 (467)
T pfam00478       271 --NVV----TAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQLTAVYEVADAARKLGVPVIA  331 (467)
T ss_pred             --EEC----CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             --005----8999999997077757755668865656420366775087999999998656987994


No 37 
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to 
Probab=92.95  E-value=0.87  Score=26.53  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=57.5

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             67677999999999877885773003366643543010167531024467777443157211478898888766408987
Q gi|255764463|r  177 EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADM  256 (337)
Q Consensus       177 dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~  256 (337)
                      +=|=.|++++|++-+..  .+.-|.+-+--|...                         ...-.||++-.....+-|||+
T Consensus       124 ~e~~~ki~aa~~a~~~~--~d~~I~ARTDa~~~~-------------------------~~~~~eai~R~~aY~~AGAD~  176 (243)
T cd00377         124 EEFVAKIKAARDARDDL--PDFVIIARTDALLAG-------------------------EEGLDEAIERAKAYAEAGADG  176 (243)
T ss_pred             HHHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHC-------------------------CCCHHHHHHHHHHHHHCCCCE
T ss_conf             99999999999988636--881687542345405-------------------------788999999999999829989


Q ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             9955311458999999962499899993461
Q gi|255764463|r  257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSG  287 (337)
Q Consensus       257 lMVKPa~~yLDii~~~k~~~~~P~~aYqVSG  287 (337)
                      +++- +..-.|-|+.+.+..+.|+.+-.+.|
T Consensus       177 ifi~-~~~~~~ei~~~~~~~~~Pl~~~~~~~  206 (243)
T cd00377         177 IFVE-GLKDPEEIRAFAEAPDVPLNVNMTPG  206 (243)
T ss_pred             EEEC-CCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9945-89999999999973699989995788


No 38 
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to 
Probab=92.92  E-value=0.96  Score=26.25  Aligned_cols=137  Identities=20%  Similarity=0.243  Sum_probs=75.9

Q ss_pred             HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             88999863477888773311666758988110488878632889999999999998889367633025633455445421
Q gi|255764463|r   24 NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHI  103 (337)
Q Consensus        24 ~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA  103 (337)
                      ..+|++++-+.       .|+.+.=..+--            +...+.+.+++..+.|+-++-|==.+.+.+....+...
T Consensus        59 ~~~~~I~~a~~-------lPv~aD~d~GyG------------~~~~v~~tv~~~~~aG~agi~IED~~~~k~~~~~~~~~  119 (243)
T cd00377          59 AAVRRIARAVD-------LPVIADADTGYG------------NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKV  119 (243)
T ss_pred             HHHHHHHHHCC-------CCEEEECCCCCC------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             99999996169-------988998766778------------67999999999997499679865878876566657632


Q ss_pred             CCCCCHHHHHHHHHHHHH---CCCEEEE--CCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             576537999999999730---1447986--13327100114310013654462899999999999999628973524667
Q gi|255764463|r  104 IDPDNLINEGICAIKKNI---PNIGIIT--DVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEM  178 (337)
Q Consensus       104 ~n~dglv~rAIr~IK~~f---pdl~vi~--DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM  178 (337)
                      +-+-.-.+.-|+++++..   ||++|++  |..+-.                 ...++.-.+-+..|++||||+|-+-..
T Consensus       120 l~~~~e~~~ki~aa~~a~~~~~d~~I~ARTDa~~~~-----------------~~~~~eai~R~~aY~~AGAD~ifi~~~  182 (243)
T cd00377         120 LVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAG-----------------EEGLDEAIERAKAYAEAGADGIFVEGL  182 (243)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHC-----------------CCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             306999999999999988636881687542345405-----------------788999999999999829989994589


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf             67799999999987788577300
Q gi|255764463|r  179 MDGRVQEIRKKLDSHGHINVGIM  201 (337)
Q Consensus       179 MDGrV~aIR~~Ld~~g~~~~~Im  201 (337)
                      -  ....|++..+.   .+++++
T Consensus       183 ~--~~~ei~~~~~~---~~~Pl~  200 (243)
T cd00377         183 K--DPEEIRAFAEA---PDVPLN  200 (243)
T ss_pred             C--CHHHHHHHHHH---CCCCEE
T ss_conf             9--99999999973---699989


No 39 
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=92.51  E-value=1.1  Score=25.89  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
Q ss_conf             99999999999999628973524667677999999999877885773003366643543010167531024467777443
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY  232 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sY  232 (337)
                      .|-+.+++++-..+..|.|+|-                |.++..+-+-+.+.-.+.-+     .+|+.-+-.-.|.++-|
T Consensus       157 Ls~~~~a~~~ye~~~GG~D~iK----------------DDE~l~~q~f~p~~eRv~~~-----~~a~~~a~~eTG~~~~y  215 (412)
T TIGR03326       157 LSTEEHAKVAYELWSGGVDLLK----------------DDENLTSQPFNRFEERVEKL-----YKVRDKVEAETGERKEY  215 (412)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCEE
T ss_conf             9979999999999825777312----------------66456798876589999999-----99999999875874258


Q ss_pred             CCCCCHH-HHHHHHHHHHHHCCCCEEEECC---CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             1572114-7889888876640898799553---11458999999962499899993461899999999888978899999
Q gi|255764463|r  233 YLDPANV-QEAIREASIDIQESADMLLVKP---GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMM  308 (337)
Q Consensus       233 Qmd~~n~-~eA~~e~~~D~~EGAD~lMVKP---a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~  308 (337)
                      -.|.... .|-++-++.=.+.|+.++||-+   |.+-|.-+++..+...+|+.+ |-.|-=++-. ....|+ +.  .++
T Consensus       216 ~~NiT~~~~em~~ra~~a~e~G~~~vMv~~~~~G~sal~~lr~~~~d~~l~iha-HrA~~ga~~r-~p~~Gi-s~--~vl  290 (412)
T TIGR03326       216 LANITAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHA-HRAMHAAFTR-NPKHGI-SM--FAL  290 (412)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEE-CCCCCHHHHC-CCCCCC-CH--HHH
T ss_conf             864378999999999999983998797436324635999999862234977984-3664044443-876773-69--999


Q ss_pred             HHHHHHHHHCCCEEEEC
Q ss_conf             99999977269999820
Q gi|255764463|r  309 ESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       309 E~l~~~kRAGAd~IitY  325 (337)
                        -...+-||+|.|.++
T Consensus       291 --~Kl~RLaGaD~ih~~  305 (412)
T TIGR03326       291 --AKLYRLIGVDQLHTG  305 (412)
T ss_pred             --HHHHHHCCCCEEECC
T ss_conf             --999998398824227


No 40 
>PRK05926 hypothetical protein; Provisional
Probab=92.32  E-value=0.49  Score=28.21  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             8887863288999999999999888936763302563345544542157653799999999973014479
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI  126 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v  126 (337)
                      +.=|+-|.+|+|.+.+.+++ .+.|+.-|.+-+++.++..=+          .....+|.||+.||++-|
T Consensus        92 ~~~~~aY~ls~eei~~~v~e-~~~g~tEv~i~GG~hP~l~~~----------yY~~l~~~ik~~~P~v~i  150 (371)
T PRK05926         92 PGDPKGWFYTPDQLIQSIQE-IKSPITETHIVAGCFPSCNLA----------YYEELFSKIKENFPDIHI  150 (371)
T ss_pred             CCCCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCCCC
T ss_conf             99976523899999999999-875996899717889899869----------999999999975898741


No 41 
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=91.67  E-value=1.3  Score=25.25  Aligned_cols=213  Identities=18%  Similarity=0.167  Sum_probs=129.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf             87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH  138 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h  138 (337)
                      +=|..+|.=|-+-+.|++++++|+-=|=+|    +         |+|+.==+++||+++|+.-.|..   -.+|| ||..
T Consensus        82 LlGYRHYADDVVe~FV~~a~~NG~DVFRiF----D---------ALND~RNl~~ai~a~Kk~g~dHv---Qg~iS-YTtS  144 (616)
T TIGR01108        82 LLGYRHYADDVVEAFVKKAVENGLDVFRIF----D---------ALNDPRNLQKAIEAAKKHGADHV---QGAIS-YTTS  144 (616)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEEE----C---------CCCCHHHHHHHHHHHHHHCCCEE---EEEEE-CCCC
T ss_conf             234415843689999999997598089951----2---------45887789999999997389789---99971-2468


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHH-HCC--CCC-CCEECHHHH
Q ss_conf             431001365446289999999999999962897352466767--------79999999998-778--857-730033666
Q gi|255764463|r  139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLD-SHG--HIN-VGIMPYVAK  206 (337)
Q Consensus       139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld-~~g--~~~-~~ImsYsaK  206 (337)
                      ==            -|++.+.+.|--+|+-|+|.||==||==        -=|.+|++..+ -.=  |++ |.=||--|-
T Consensus       145 Pv------------HTl~~yl~la~~L~~~G~DSI~IKDMaGlLTP~~AYELV~alK~~~~n~pvhLH~H~TtGmA~~Al  212 (616)
T TIGR01108       145 PV------------HTLEKYLELAKELLEMGVDSICIKDMAGLLTPKVAYELVSALKKEFGNLPVHLHSHATTGMAEMAL  212 (616)
T ss_pred             CH------------HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf             43------------678889999999998188605520200464415899999999742397468863247233799999


Q ss_pred             HHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCEEEECCCHHHHHHHHHHHHHC-C-----
Q ss_conf             43543010-167531024467777443157211478898888766--40898799553114589999999624-9-----
Q gi|255764463|r  207 FNSSFYGP-YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI--QESADMLLVKPGLPYLDVCFRIKEKF-G-----  277 (337)
Q Consensus       207 faS~fYgP-FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~--~EGAD~lMVKPa~~yLDii~~~k~~~-~-----  277 (337)
                      +.-.-=|= +=|-|=|  +|+   .+|=+||   .|+|-++..+.  +.|-|+-..|-.-.|.-=||+==..| .     
T Consensus       213 lkA~EAG~d~iDTAis--S~S---~gtSHPp---tE~lv~~L~~~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~~~  284 (616)
T TIGR01108       213 LKAIEAGADMIDTAIS--SMS---GGTSHPP---TETLVAALRGTGYDTGLDIELLLEIADYFRKVRKKYSQFLESQLKG  284 (616)
T ss_pred             HHHHHCCCCCCHHCCC--CCC---CCCCCCH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9888707880020055--234---7888874---7999999705787431027999999999999999998860767778


Q ss_pred             --CCEEEEECCHH-HH-HHHHHHHCCCCCHHHHHH
Q ss_conf             --98999934618-99-999999888978899999
Q gi|255764463|r  278 --LPTFAYQVSGE-YA-MIKAASLQGWINKNDAMM  308 (337)
Q Consensus       278 --~P~~aYqVSGE-Ya-mi~~a~~~g~~d~~~~~~  308 (337)
                        .-|-.|||=|= |+ .+.-.=+++..|.=+.++
T Consensus       285 ~D~RiLv~QvPGGM~SNL~~QLkEQna~DkLd~VL  319 (616)
T TIGR01108       285 PDSRILVSQVPGGMLSNLESQLKEQNALDKLDEVL  319 (616)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88448997368806889999998623755788887


No 42 
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=91.34  E-value=1.5  Score=25.02  Aligned_cols=78  Identities=18%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             666758988110488878632889999999999998889367633025633455-4454215765379999999997301
Q gi|255764463|r   44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDNLINEGICAIKKNIP  122 (337)
Q Consensus        44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dglv~rAIr~IK~~fp  122 (337)
                      ++|+--.|.-.+.+++--.-=++.+++.+++.++++.|-..+-+.      -+| ++|+.+++++ ...+++..|++..|
T Consensus         2 ~iIt~A~~Ga~~~k~~~P~lP~Tp~Eia~~A~~c~~AGAsivH~H------vRd~~dG~~s~d~~-~y~e~i~~Ir~~~p   74 (274)
T pfam05853         2 VIITCAPTGAIHTPSDSPALPVTPEEIAEEAVAAAEAGAAIVHLH------VRDPEDGRPSQDPE-LFREVLERIREAVP   74 (274)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE------ECCCCCCCCCCCHH-HHHHHHHHHHHHCC
T ss_conf             699990689968723399998998999999999997087389988------44788899068899-99999999998789


Q ss_pred             CCEEEE
Q ss_conf             447986
Q gi|255764463|r  123 NIGIIT  128 (337)
Q Consensus       123 dl~vi~  128 (337)
                      |++|-.
T Consensus        75 d~ii~~   80 (274)
T pfam05853        75 DVIINL   80 (274)
T ss_pred             CCEEEE
T ss_conf             968994


No 43 
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=91.30  E-value=0.6  Score=27.65  Aligned_cols=168  Identities=20%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      ..+++..++.+++..+.   ..++=-++| -.|.+         |.  ++|+.||+.|||-.|.+|.=-           
T Consensus        12 ~~~l~~Ai~~a~~v~~~---~diiEvGTp-Lik~e---------G~--~aV~~lr~~~pd~~IvAD~Kt-----------   65 (217)
T COG0269          12 LLDLEEAIEIAEEVADY---VDIIEVGTP-LIKAE---------GM--RAVRALRELFPDKIIVADLKT-----------   65 (217)
T ss_pred             CCCHHHHHHHHHHHHHC---CEEEEECCH-HHHHH---------HH--HHHHHHHHHCCCCEEEEEEEE-----------
T ss_conf             57799999999971221---329980769-99985---------17--999999987899868862032-----------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC
Q ss_conf             13654462899999999999999628973524667677999999999877885773003366643543010167531024
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD  223 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p  223 (337)
                      .+-|        ..++++   .++||||++.=|.+.|-  ..|.+++....-.+                          
T Consensus        66 ~D~G--------~~e~~m---a~~aGAd~~tV~g~A~~--~TI~~~i~~A~~~~--------------------------  106 (217)
T COG0269          66 ADAG--------AIEARM---AFEAGADWVTVLGAADD--ATIKKAIKVAKEYG--------------------------  106 (217)
T ss_pred             CCHH--------HHHHHH---HHHCCCCEEEEEECCCH--HHHHHHHHHHHHCC--------------------------
T ss_conf             2404--------899999---99738987999804888--99999999999839--------------------------


Q ss_pred             CCCCCCCCCCCCCCHH---HHHHHHHHHHHHCCCCEEEECCC-------HHH-HHHHHHHHHHCC--CCEEEEECCHHHH
Q ss_conf             4677774431572114---78898888766408987995531-------145-899999996249--9899993461899
Q gi|255764463|r  224 LLKGDKKTYYLDPANV---QEAIREASIDIQESADMLLVKPG-------LPY-LDVCFRIKEKFG--LPTFAYQVSGEYA  290 (337)
Q Consensus       224 ~~~gdr~sYQmd~~n~---~eA~~e~~~D~~EGAD~lMVKPa-------~~y-LDii~~~k~~~~--~P~~aYqVSGEYa  290 (337)
                            +--|+|--|.   ..+.++..   +-|.|++.+--+       ... +|.+..+|+.+.  .++++        
T Consensus       107 ------~~v~iDl~~~~~~~~~~~~l~---~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV--------  169 (217)
T COG0269         107 ------KEVQIDLIGVWDPEQRAKWLK---ELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV--------  169 (217)
T ss_pred             ------CEEEEEEECCCCHHHHHHHHH---HHCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHCCCCEEEE--------
T ss_conf             ------869998516899999999999---718978999704347650899417789999986236835998--------


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             99999988897889999999999977269999820
Q gi|255764463|r  291 MIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       291 mi~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                             +|-++.     |.+.-|+-.|++++|-=
T Consensus       170 -------aGGI~~-----~~i~~~~~~~~~ivIvG  192 (217)
T COG0269         170 -------AGGITP-----EDIPLFKGIGADIVIVG  192 (217)
T ss_pred             -------ECCCCH-----HHHHHHHCCCCCEEEEC
T ss_conf             -------668788-----78899864899799988


No 44 
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.28  E-value=1  Score=26.06  Aligned_cols=172  Identities=23%  Similarity=0.296  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      ...||---++.+-+.+-+..+..-|-.+|=.=+                   +  .-|++||+.. ++-||         
T Consensus        16 QA~~~ePl~~~~im~~mA~Aa~~gGA~giR~~~-------------------~--~dI~aIk~~v-~lPII---------   64 (219)
T cd04729          16 QALPGEPLHSPEIMAAMALAAVQGGAVGIRANG-------------------V--EDIRAIRARV-DLPII---------   64 (219)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-------------------H--HHHHHHHHCC-CCCEE---------
T ss_conf             189889968778999999999978963998089-------------------8--8999998328-99889---------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH---------HHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             1143100136544628999999999999996289735246676779---------9999999987788577300336664
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR---------VQEIRKKLDSHGHINVGIMPYVAKF  207 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr---------V~aIR~~Ld~~g~~~~~ImsYsaKf  207 (337)
                           ||++.+.-+-+.=+.-.-+-+...++|||||||--.-.--|         |..||+.     + +..+|+=    
T Consensus        65 -----Gi~K~~~~~s~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~g~~l~~~i~~i~~~-----~-~~l~MAD----  129 (219)
T cd04729          65 -----GLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----Y-NCLLMAD----  129 (219)
T ss_pred             -----EEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-----H-CCEEEEE----
T ss_conf             -----999568899984566889999999985999999946788798997899999999998-----6-9778875----


Q ss_pred             HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----------ECCCHHHHHHHHHHHHHCC
Q ss_conf             354301016753102446777744315721147889888876640898799----------5531145899999996249
Q gi|255764463|r  208 NSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL----------VKPGLPYLDVCFRIKEKFG  277 (337)
Q Consensus       208 aS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM----------VKPa~~yLDii~~~k~~~~  277 (337)
                                                  .++..|++...    +-|+|++=          -++..|-+++++++++.+.
T Consensus       130 ----------------------------~st~ee~~~A~----~~G~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~~  177 (219)
T cd04729         130 ----------------------------ISTLEEALNAA----KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG  177 (219)
T ss_pred             ----------------------------CCCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             ----------------------------48899999999----8499899702145677878899987899999999759


Q ss_pred             CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             989999346189999999988897889999999999977269999820
Q gi|255764463|r  278 LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       278 ~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      +|+.|               .|-++....+.+.+    .+||+.++-=
T Consensus       178 ~pvIa---------------EGri~tPe~a~~a~----~~GA~aVVVG  206 (219)
T cd04729         178 IPVIA---------------EGRINSPEQAAKAL----ELGADAVVVG  206 (219)
T ss_pred             CCEEE---------------ECCCCCHHHHHHHH----HCCCCEEEEC
T ss_conf             93997---------------06989999999999----8399899989


No 45 
>PRK10200 putative racemase; Provisional
Probab=91.27  E-value=0.86  Score=26.58  Aligned_cols=68  Identities=24%  Similarity=0.313  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEECC--------------------CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH
Q ss_conf             628999999999999996289735246--------------------676779999999998778857730033666435
Q gi|255764463|r  150 VNDETIELISHAAVIQADAGADIIAPS--------------------EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS  209 (337)
Q Consensus       150 dND~Tl~~L~k~Al~~A~AGaDivAPS--------------------dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS  209 (337)
                      +.|...+.|.+.|..+.+||||.++=.                    .|.|-.+.+++    ..|+..+++|.=..-..|
T Consensus        56 ~~d~~~~~L~~~a~~Le~aGAd~i~i~cNTaH~~~d~i~~~~~iP~l~i~~~t~~~i~----~~g~~~VglLgT~~Tm~~  131 (230)
T PRK10200         56 EWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAIA----GAGMTRVALLGTRYTMEQ  131 (230)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHH----HCCCCEEEEECCHHHHHH
T ss_conf             9653999999999999984999999647478999999997569987318999999999----759985898514566661


Q ss_pred             HHH-CCHHHHHHC
Q ss_conf             430-101675310
Q gi|255764463|r  210 SFY-GPYRDAIST  221 (337)
Q Consensus       210 ~fY-gPFRdA~~S  221 (337)
                      .|| +.|.+..|-
T Consensus       132 ~~Y~~~l~~~~gi  144 (230)
T PRK10200        132 DFYRGRLTEQFSI  144 (230)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             6889999985798


No 46 
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=91.01  E-value=1.3  Score=25.37  Aligned_cols=65  Identities=28%  Similarity=0.428  Sum_probs=49.5

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCC
Q ss_conf             99999999888936763302563345544542157653799999999973014479861332710011431001365446
Q gi|255764463|r   71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIV  150 (337)
Q Consensus        71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~Id  150 (337)
                      .+.++++.+.|+..+    +|+.++=+         +-.+...||.||+++||+-||+                  |-| 
T Consensus       241 ~~R~~~L~~AGvDv~----viDsshGh---------s~~vl~~ik~~k~~Yp~~~iia------------------GNV-  288 (476)
T TIGR01302       241 LERAEALVEAGVDVI----VIDSSHGH---------SIYVLDSIKKIKKTYPDLDIIA------------------GNV-  288 (476)
T ss_pred             HHHHHHHHHCCCCEE----EEECCCCC---------CHHHHHHHHHHHHHCCEEEEEE------------------CCC-
T ss_conf             899999996596589----98166545---------3789999999986388057994------------------344-


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             28999999999999996289735
Q gi|255764463|r  151 NDETIELISHAAVIQADAGADII  173 (337)
Q Consensus       151 ND~Tl~~L~k~Al~~A~AGaDiv  173 (337)
                            .-.+||-.+.+||||.|
T Consensus       289 ------aT~~~a~~LI~AgADg~  305 (476)
T TIGR01302       289 ------ATAEQAKALIDAGADGL  305 (476)
T ss_pred             ------CCHHHHHHHHHCCCCEE
T ss_conf             ------11788988985288878


No 47 
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=90.99  E-value=0.76  Score=26.95  Aligned_cols=221  Identities=15%  Similarity=0.161  Sum_probs=125.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE-EECCCCCHHHC---
Q ss_conf             63288999999999999888936763302563345544542157653799999999973014479-86133271001---
Q gi|255764463|r   62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI-ITDVALDPFTI---  137 (337)
Q Consensus        62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v-i~DVcLc~YT~---  137 (337)
                      -+++|.+++.+|++.+.+.|++.|+|--+-  +.+.       .+-..+.++|+.||+.|+.+.| +.-.-..+|-.   
T Consensus       101 R~~Ls~eEI~~E~~ai~~~G~k~ILLvtGE--~~~~-------~~~~Yi~~~v~~ik~~f~~v~iev~Pl~~eeY~~L~~  171 (371)
T PRK09240        101 RKTLDEEEIEREMAAIKKLGFEHILLVTGE--HEAK-------VGVDYIRRALPLAREYFSSVAIEVQPLSEEEYAELVE  171 (371)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCCC-------CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf             002899999999999997695238854057--8776-------9889999999999975674079952599899999998


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHH------------HHHHHHHHCCCCEEECC---CCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             1431001365446289999999------------99999996289735246---67677999999999877885773003
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELIS------------HAAVIQADAGADIIAPS---EMMDGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~------------k~Al~~A~AGaDivAPS---dMMDGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      .|-+|+.-=.+--|.+|-+.|-            ..----++||.|-|+--   +.-|-|..+.-             |.
T Consensus       172 aG~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~dwr~e~~~-------------~~  238 (371)
T PRK09240        172 LGLDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLSDWRTDALM-------------TA  238 (371)
T ss_pred             CCCCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCCHHHHHHHH-------------HH
T ss_conf             59986999603259999998588998545254523788898759970361102265468999999-------------99


Q ss_pred             HHHHHHHHHHCC---------HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
Q ss_conf             366643543010---------16753102446777744315721147889888876640898799553114589999999
Q gi|255764463|r  203 YVAKFNSSFYGP---------YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIK  273 (337)
Q Consensus       203 YsaKfaS~fYgP---------FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k  273 (337)
                      +-+.|=..-|+-         .|-|.|+      ..-.|.++-++-...+....+             .+||..|+=..|
T Consensus       239 ~Ha~~L~~~y~~~~~siS~PRlrP~~g~------~~p~~~vsD~~l~q~i~a~Rl-------------~~P~~gi~lSTR  299 (371)
T PRK09240        239 LHLRYLQRKYWRARYSISFPRLRPCTGG------FEPKSIVSDRQLVQLICAFRL-------------FLPDVEISLSTR  299 (371)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHH-------------HCCCCCCEEECC
T ss_conf             9999999877998757635753368899------889865788999999999998-------------665556168647


Q ss_pred             HHC-----CCCEEEEECC-------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             624-----9989999346-------1899999999888978899999999999772699998
Q gi|255764463|r  274 EKF-----GLPTFAYQVS-------GEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       274 ~~~-----~~P~~aYqVS-------GEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                      +.-     -+|+++=|.|       |-|+--....++=-++-.+.+-|....++..|=.-+.
T Consensus       300 E~~~~Rd~li~lGvT~mSAgs~T~~GGy~~~~~~~~QF~i~D~Rs~~Ev~~~l~~~Gy~Pv~  361 (371)
T PRK09240        300 ESPEFRDNLIPLGITKMSAGSSTQPGGYADPEKELEQFEISDDRSVEEVAAALRAQGLQPVW  361 (371)
T ss_pred             CCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECC
T ss_conf             89899988885256025555546887778999886665379998999999999987991031


No 48 
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=90.63  E-value=1.3  Score=25.45  Aligned_cols=199  Identities=17%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             878632889999999999998889367633-0256334554454215765379999999997301447986133271001
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIF-PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LF-p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      .|+.. +|.+.-++-++.+.++|++.|=+. |.+.+  |+.             ..++.+++.+|+.-+         . 
T Consensus         6 ~~~~~-~~~e~K~~i~~~L~~~Gv~~IEvg~~~~~~--~~~-------------~~~~~~~~~~~~~~~---------~-   59 (237)
T pfam00682         6 ALGAA-FSVEEKLAIARALDEAGVDEIEVGFPFMSP--TDF-------------ESVRAIAEVLKKAKI---------Q-   59 (237)
T ss_pred             CCCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHH-------------HHHHHHHHHCCCCCC---------C-
T ss_conf             99999-899999999999998498989995775897--359-------------999977650258751---------0-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH
Q ss_conf             14310013654462899999999999999628973524667677999999999877885773003366643543010167
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD  217 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd  217 (337)
                          ++..-...+|+..++.+       ..+|+|.|.-..-..-.  .+++.+...--...-.+.-+.+|+....-.   
T Consensus        60 ----~~~~~~~~~~~~~~e~~-------~~~g~~~i~i~~~~se~--~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~---  123 (237)
T pfam00682        60 ----ALLRPVEHDIDAAVEAA-------KGAGADRVHVFIATSDL--HRKYKLNKDREEVADRAVAAVEAARSAGID---  123 (237)
T ss_pred             ----CEEECCCHHHHHHHHHH-------HHCCCCEEEEEEECCHH--HHHHHHCCCHHHHHHHHHHHHHHHHHCCCE---
T ss_conf             ----10003410499999999-------96799999996105787--899885789999999999999999986990---


Q ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH------HHHHHHHHHHHCC-CCEEEEECCHHHH
Q ss_conf             53102446777744315721147889888876640898799553114------5899999996249-9899993461899
Q gi|255764463|r  218 AISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP------YLDVCFRIKEKFG-LPTFAYQVSGEYA  290 (337)
Q Consensus       218 A~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~------yLDii~~~k~~~~-~P~~aYqVSGEYa  290 (337)
                           -.| +--.++..|+....+.   +..=.+.|+|.+.++=-.-      .-++++.++++++ .|+.. |.--   
T Consensus       124 -----v~f-~~~~~~~~~~~~~~~~---~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~-H~Hn---  190 (237)
T pfam00682       124 -----VEL-GCEDAGRTDLAFLIEV---VEVAQEAGATRINIADTVGVLTPNEAADLISALKDRVPPVIIEV-HCHN---  190 (237)
T ss_pred             -----EEE-EECCCCCCCHHHHHHH---HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEE-EECC---
T ss_conf             -----588-4051232478899999---99998619857973686455798999999999997089871588-7448---


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             9999998889788999999999997726999982
Q gi|255764463|r  291 MIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       291 mi~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                                 |.--++--++.++. ||++.|=|
T Consensus       191 -----------~~Gla~aN~l~A~~-aG~~~id~  212 (237)
T pfam00682       191 -----------DLGMAVANSLAAVE-AGADRVDG  212 (237)
T ss_pred             -----------CCCHHHHHHHHHHH-HCCCEEEE
T ss_conf             -----------86729999999999-68999987


No 49 
>KOG0369 consensus
Probab=90.63  E-value=1.3  Score=25.38  Aligned_cols=174  Identities=22%  Similarity=0.387  Sum_probs=97.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      |+--.|+++-.+..++++++.|..-.    +|    ||--|.  ..|. -----|.+|+++||||-|         --|-
T Consensus       710 p~rtKY~L~YY~nlad~lV~agtHiL----~I----KDMAG~--lKP~-aa~lLi~alRdk~PdlPi---------HvHt  769 (1176)
T KOG0369         710 PSRTKYNLDYYLNLADKLVKAGTHIL----GI----KDMAGV--LKPE-AAKLLIGALRDKFPDLPI---------HVHT  769 (1176)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEE----EE----HHHHCC--CCHH-HHHHHHHHHHHCCCCCCE---------EEEC
T ss_conf             65441147999989999986267188----65----444233--6768-889999988740899853---------7741


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCCCH-----HHHHHHHHHHCCC----CCCCEECHHHHHHH
Q ss_conf             31001365446289999999999999962897352-46676779-----9999999987788----57730033666435
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGADIIA-PSEMMDGR-----VQEIRKKLDSHGH----INVGIMPYVAKFNS  209 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-PSdMMDGr-----V~aIR~~Ld~~g~----~~~~ImsYsaKfaS  209 (337)
                      ||-   .|         .-+---+.-|+||||+|- .-|-|-|.     .+|+-..|+.+-.    .---+--||+-|++
T Consensus       770 HDt---sG---------agVAsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~  837 (1176)
T KOG0369         770 HDT---SG---------AGVASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQ  837 (1176)
T ss_pred             CCC---CC---------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             677---63---------879999999873996044330014566568851032200258756678766678888999998


Q ss_pred             --HHHCCHHHHHHCCCCCCCCCCCCCCCC---------------------CHHHHHHHHHHHHHHCCCCEEEECCCHHHH
Q ss_conf             --430101675310244677774431572---------------------114788988887664089879955311458
Q gi|255764463|r  210 --SFYGPYRDAISTRDLLKGDKKTYYLDP---------------------ANVQEAIREASIDIQESADMLLVKPGLPYL  266 (337)
Q Consensus       210 --~fYgPFRdA~~S~p~~~gdr~sYQmd~---------------------~n~~eA~~e~~~D~~EGAD~lMVKPa~~yL  266 (337)
                        -+|.||--+..-.   .||-.-||...                     +..+.|.||+-+=.   -||+-|-|.   -
T Consensus       838 ~R~LYapFe~tttmk---sgn~dVY~hEIPGGQyTNL~FQA~slGLG~q~~evKkaYrEAN~lL---GDiiKVTPs---S  908 (1176)
T KOG0369         838 MRLLYAPFECTTTMK---SGNSDVYQHEIPGGQYTNLQFQAFSLGLGEQFAEVKKAYREANLLL---GDIIKVTPS---S  908 (1176)
T ss_pred             HHHHCCCHHCCCCCC---CCCCCHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH---HCEEEECCC---H
T ss_conf             664303010002334---7983054243887530013333100464066899999999988775---064561553---0


Q ss_pred             HHHHHHHH
Q ss_conf             99999996
Q gi|255764463|r  267 DVCFRIKE  274 (337)
Q Consensus       267 Dii~~~k~  274 (337)
                      -|+.++.+
T Consensus       909 KvVGDLAQ  916 (1176)
T KOG0369         909 KVVGDLAQ  916 (1176)
T ss_pred             HHHHHHHH
T ss_conf             55778999


No 50 
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=90.38  E-value=1.2  Score=25.59  Aligned_cols=99  Identities=26%  Similarity=0.439  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      |+++.-++-.+++++.||-+|.+        ||--|=  +.|. .-..-+++||++|+++-|           |=||   
T Consensus       147 HTl~~yl~la~~L~~~G~DSI~I--------KDMaGl--LTP~-~AYELV~alK~~~~n~pv-----------hLH~---  201 (616)
T TIGR01108       147 HTLEKYLELAKELLEMGVDSICI--------KDMAGL--LTPK-VAYELVSALKKEFGNLPV-----------HLHS---  201 (616)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEE--------ECCCCC--CCHH-HHHHHHHHHHHHCCCEEE-----------EEEC---
T ss_conf             67888999999999818860552--------020046--4415-899999999742397468-----------8632---


Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HHHCCCCEE--ECCCCCCC----HHHHHHHHHHHCCCC
Q ss_conf             36544628999999999999-996289735--24667677----999999999877885
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVI-QADAGADII--APSEMMDG----RVQEIRKKLDSHGHI  196 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~-~A~AGaDiv--APSdMMDG----rV~aIR~~Ld~~g~~  196 (337)
                              .+-.=++.+|+. -.|||||+|  |=|.|==|    -..++=.+|...||.
T Consensus       202 --------H~TtGmA~~AllkA~EAG~d~iDTAisS~S~gtSHPptE~lv~~L~~~gyD  252 (616)
T TIGR01108       202 --------HATTGMAEMALLKAIEAGADMIDTAISSMSGGTSHPPTETLVAALRGTGYD  252 (616)
T ss_pred             --------CCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             --------472337999999888707880020055234788887479999997057874


No 51 
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=90.15  E-value=0.74  Score=27.00  Aligned_cols=168  Identities=17%  Similarity=0.121  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
Q ss_conf             32889999999999998889367633025633455445421576537999999999730144798613327100114310
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG  142 (337)
                      -+.+++..++.++++ .-++. ++=. ++| --|+         .|+  ++||.+|+.||+-.|.+|.=-          
T Consensus        11 D~~~l~~A~~~a~~v-~~~vD-IIE~-GTp-Lik~---------~G~--~aV~~lr~~~P~~~IvAD~Kt----------   65 (220)
T PRK13305         11 DHTSLEAAQRDVALL-QDHVD-IVEA-GTI-LCLN---------EGL--GAVKALREQCPDKIIVADWKV----------   65 (220)
T ss_pred             CCCCHHHHHHHHHHH-HCCCC-EEEE-CCH-HHHH---------HHH--HHHHHHHHHCCCCEEEEEEEE----------
T ss_conf             679999999999983-04688-9990-879-9998---------429--999999987899879987545----------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHC--CHHHHHH
Q ss_conf             01365446289999999999999962897352466767799999999987788577300336664354301--0167531
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYG--PYRDAIS  220 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYg--PFRdA~~  220 (337)
                       .+.|           .--+-.-++||||++.=+...+  ...|+++++...-.+.-+|-=       +||  ++.+|-.
T Consensus        66 -~DaG-----------~~Ea~~a~~aGAD~vTVlg~A~--~~TI~~~~~~a~~~g~~v~vD-------li~~~~~~~ak~  124 (220)
T PRK13305         66 -ADAG-----------ETLAQQAFGAGANWMTIICAAP--LATVEKGHAVAQSCGGEIQIE-------LFGNWTLDDARD  124 (220)
T ss_pred             -CCCH-----------HHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHHHCCCEEEEE-------ECCCCCHHHHHH
T ss_conf             -2625-----------9999999865998899956689--799999999999809989998-------458998789999


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-----------CCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             0244677774431572114788988887664089879955-----------31145899999996249989999346189
Q gi|255764463|r  221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK-----------PGLPYLDVCFRIKEKFGLPTFAYQVSGEY  289 (337)
Q Consensus       221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-----------Pa~~yLDii~~~k~~~~~P~~aYqVSGEY  289 (337)
                      -                            .+=|.|.+.+.           ++-.-|+.++.+.+ .+.++++       
T Consensus       125 ~----------------------------~~lgv~~v~~H~g~D~q~~g~~~~~~~l~~~k~~~~-~~~~vaV-------  168 (220)
T PRK13305        125 W----------------------------HRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSD-IGLELSI-------  168 (220)
T ss_pred             H----------------------------HHCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHH-CCCEEEE-------
T ss_conf             9----------------------------986998899983336765189863101999998760-6964999-------


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             999999988897889999999999977269999820
Q gi|255764463|r  290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       290 ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                              +|-++.     |++.-|+-.|+|++|-=
T Consensus       169 --------AGGI~~-----~~i~~~~~~~~~ivIvG  191 (220)
T PRK13305        169 --------TGGITP-----ADLPLFKDIRVKAFIAG  191 (220)
T ss_pred             --------ECCCCH-----HHHHHHHCCCCCEEEEC
T ss_conf             --------888788-----89999971699899989


No 52 
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.01  E-value=1.9  Score=24.25  Aligned_cols=39  Identities=38%  Similarity=0.423  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9999999997301447986133271001143100136544628999999999999996289735
Q gi|255764463|r  110 INEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII  173 (337)
Q Consensus       110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv  173 (337)
                      +...++.||+.||++.||+--+-.                         .+++..+.++|||.|
T Consensus       122 ~~~~ik~ir~~~p~~~IiaGNV~T-------------------------~e~a~~L~~~GaD~v  160 (325)
T cd00381         122 VIEMIKFIKKKYPNVDVIAGNVVT-------------------------AEAARDLIDAGADGV  160 (325)
T ss_pred             HHHHHHHHHHHCCCCCEEECCCCC-------------------------HHHHHHHHHCCCCEE
T ss_conf             999999999768997568645668-------------------------999999986699899


No 53 
>PRK07534 methionine synthase I; Validated
Probab=89.98  E-value=1.9  Score=24.23  Aligned_cols=220  Identities=14%  Similarity=0.105  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEE--EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-CCEEEECCCCCHHHCCCCC
Q ss_conf             99999999999888936763--3025633455445421576537999999999730---1-4479861332710011431
Q gi|255764463|r   68 DVAVEKIKQVADLGIPAIAI--FPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---P-NIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        68 d~L~~eie~~~~lGI~av~L--Fp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---p-dl~vi~DVcLc~YT~hGHc  141 (337)
                      |.+.+.=++-++.|-.-+.-  |...+..+|.....+-+  ..+..+|++.-|+..   . ++.|..++  -||-.    
T Consensus        45 d~V~~iH~dyi~AGAdVI~TNTy~a~~~~L~~~~~e~~~--~eln~~Av~lAr~Aa~~~~~~v~VAGSi--gP~g~----  116 (335)
T PRK07534         45 DKIRALYQGAVDAGSDIFLTNSFGGTAARLKLHEAQDRV--HELNRRAAEIGREVADKAGRKVIVAGSV--GPTGE----  116 (335)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHCCCCEEEEECC--CCCCC----
T ss_conf             999999999999659999807761469999765738999--9999999999999987329967999436--77666----


Q ss_pred             CCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf             0013-654462899999999999999628973524667677999999999877885773003366643543010167531
Q gi|255764463|r  142 GILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS  220 (337)
Q Consensus       142 Gi~~-~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~  220 (337)
                       .+. ++....|+.++.+.+|+..+.++|+|++.---|.|  +..++.+++.....+.+++.. .    +    |.+   
T Consensus       117 -~~~p~~~~~~~e~~~~f~eq~~~L~~~gvDlil~ETm~~--i~E~~aa~~a~~~~~~P~~~~-~----s----~~~---  181 (335)
T PRK07534        117 -IMEPMGALTHAEAVEMFHEQAEGLKAGGADVLWVETISA--PEEFRAAAEAAALAGMPWCGT-M----S----FDT---  181 (335)
T ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH--HHHHHHHHHHHHHCCCCEEEE-E----E----ECC---
T ss_conf             -457778999999999999999998736998995599874--999999999988559988999-9----9----828---


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHH----HHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf             02446777744315721147889888876640898799553114589----99999962499899993461899999999
Q gi|255764463|r  221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLD----VCFRIKEKFGLPTFAYQVSGEYAMIKAAS  296 (337)
Q Consensus       221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLD----ii~~~k~~~~~P~~aYqVSGEYami~~a~  296 (337)
                           .| +   .+.-....+ +.+....+.++++.+.|.=+..-.+    ++..++..+..|+.+|-=+|.......  
T Consensus       182 -----~g-~---~~~G~~~~~-~~~~~~~~~~~~~avGvNC~~~~~~~~~~~l~~~~~~~~~p~~~~pNaG~p~~~~~--  249 (335)
T PRK07534        182 -----AG-R---TMMGLTPAD-LAGLVDKLPHPPLAFGANCGVGASDLLRTVLGFAAQGPERPIIAKGNAGIPKYVDG--  249 (335)
T ss_pred             -----CC-C---CCCCCCHHH-HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC--
T ss_conf             -----99-7---489999999-99999975897300200057888999999999998489971898789999875799--


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             88897889999999999977269999
Q gi|255764463|r  297 LQGWINKNDAMMESLLAFKRAGCDGI  322 (337)
Q Consensus       297 ~~g~~d~~~~~~E~l~~~kRAGAd~I  322 (337)
                      ...|-...+.+.|-..-++..||++|
T Consensus       250 ~~~~~~tpe~f~~~~~~w~~~Ga~II  275 (335)
T PRK07534        250 HIHYDGTPELMAEYAVLARDAGARII  275 (335)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             40437999999999999998798199


No 54 
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=89.82  E-value=2  Score=24.14  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCCCCHHH--HHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             32889999999999998889367633025633455445-42157653799--9999999730144798613327100114
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG-SHIIDPDNLIN--EGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G-seA~n~dglv~--rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      -+.++..+=..++.+.+.||++|+=-=+=|+. +++.= ...-+|-||-|  --||-||.+|+|-.   +||.-.| .-|
T Consensus        75 TN~~~e~ID~AL~~~~~~G~~NiLALRGDPP~-~~~~wlds~~~EgGF~YA~DLV~yIr~~YGD~F---~IgVAGY-PEg  149 (312)
T TIGR00677        75 TNMPIEMIDDALERAKSNGIQNILALRGDPPH-GDEDWLDSTEVEGGFKYAVDLVKYIRSKYGDYF---CIGVAGY-PEG  149 (312)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---CEEECCC-CCC
T ss_conf             89757889999999986565334003761068-765533456787515766788998775238802---1120278-777


Q ss_pred             CCCCCCCC-----C--C----CHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             31001365-----4--4----62899999999999999628973524
Q gi|255764463|r  140 HDGILCDG-----E--I----VNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       140 HcGi~~~g-----~--I----dND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      ||-.+.+|     .  +    |-++.|+-|.+-    -+||||.|--
T Consensus       150 Hpe~i~~Gla~~~~kd~GheqdP~~DL~yLK~K----V~aGADfIiT  192 (312)
T TIGR00677       150 HPEAIEDGLASNEAKDVGHEQDPEKDLKYLKEK----VDAGADFIIT  192 (312)
T ss_pred             CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH----HCCCCCEEEE
T ss_conf             834665202577532467545736789999886----3058974752


No 55 
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=89.15  E-value=0.97  Score=26.22  Aligned_cols=186  Identities=21%  Similarity=0.281  Sum_probs=94.0

Q ss_pred             HHHHHHCCCEEEECCCCC----HHHCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf             999730144798613327----1001143--1001365446289999999999999962897352466767799999999
Q gi|255764463|r  116 AIKKNIPNIGIITDVALD----PFTIHGH--DGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKK  189 (337)
Q Consensus       116 ~IK~~fpdl~vi~DVcLc----~YT~hGH--cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~  189 (337)
                      .+++..++=+++.|=++-    .|.-+--  -|+=.+.++.|..-=+.+.++-..|.+||||||--.--     ++-+-+
T Consensus         7 ~l~~~l~~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTF-----gat~i~   81 (311)
T COG0646           7 QLREALKERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTF-----GATTIK   81 (311)
T ss_pred             HHHHHHHCCEEEEECHHHHHHHHCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCC-----CCCHHH
T ss_conf             899998719789716024557764786676255447707875479499999999999646767873477-----865365


Q ss_pred             HHHCCCCC---------CCEECHHHHHHH--------HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHH
Q ss_conf             98778857---------730033666435--------430101675310244677774431572114788988887-664
Q gi|255764463|r  190 LDSHGHIN---------VGIMPYVAKFNS--------SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI-DIQ  251 (337)
Q Consensus       190 Ld~~g~~~---------~~ImsYsaKfaS--------~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~-D~~  251 (337)
                      |...+..+         +-|---+|+-++        .=-||.+..+...    +|   |-+.+..-.++.+|... =++
T Consensus        82 lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~----~~---~~v~fd~l~~ay~eq~~~Li~  154 (311)
T COG0646          82 LADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSIS----PD---FAVTFDELVEAYREQVEGLID  154 (311)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC----CC---CCCCHHHHHHHHHHHHHHHHH
T ss_conf             75507388999999999999999986447887538987326867767768----76---663599999999999999983


Q ss_pred             CCCCEEEECCCHHHHH---HHHHHHHHCC-----CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             0898799553114589---9999996249-----989999346189999999988897889999999999977269999
Q gi|255764463|r  252 ESADMLLVKPGLPYLD---VCFRIKEKFG-----LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGI  322 (337)
Q Consensus       252 EGAD~lMVKPa~~yLD---ii~~~k~~~~-----~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~I  322 (337)
                      +|||.+++.-----|-   .+.-+++.|.     +|+.+=.. =+        ..|..-.-+.+-+.|.+++.+|++.+
T Consensus       155 gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~T-i~--------~sG~tl~Gq~~~a~~~~l~~~~~~~v  224 (311)
T COG0646         155 GGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGT-IT--------DSGRTLSGQTIEAFLNSLEHLGPDAV  224 (311)
T ss_pred             CCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-EE--------CCCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf             787589975221689899999999999873277654799999-80--------37612379868999998663597478


No 56 
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.92  E-value=2.3  Score=23.71  Aligned_cols=41  Identities=15%  Similarity=0.172  Sum_probs=21.6

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf             11458999999962499899993461899999999888978
Q gi|255764463|r  262 GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN  302 (337)
Q Consensus       262 a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d  302 (337)
                      ....++....+|+.+++||.+-.-=-.-.+...+.+.|+.|
T Consensus       266 ~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~a~~~l~~g~~D  306 (327)
T cd02803         266 EGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKAD  306 (327)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf             52238999999997698199989989999999999889931


No 57 
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=88.70  E-value=1.5  Score=25.02  Aligned_cols=112  Identities=19%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCC
Q ss_conf             86328899999999999988893676330256334554454215765379999999997301-44798613327100114
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHG  139 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hG  139 (337)
                      .--+...+.+.+.++.+.+.|+..+.++|.+-+-.     +-...+   -.+.++...+... .+-||+-          
T Consensus        15 ~dg~iD~~~l~~~v~~li~~Gv~gi~v~GstGE~~-----~Ls~eE---r~~v~~~~v~~~~grvpvi~g----------   76 (296)
T PRK03620         15 ADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFF-----SLTPDE---YSQVVRAAVEACAGRVPVIAG----------   76 (296)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-----HCCHHH---HHHHHHHHHHHHCCCCEEEEC----------
T ss_conf             99595999999999999977999899684231343-----489999---999999999983897359825----------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--CCCCC----CCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf             31001365446289999999999999962897352--46676----7799999999987788577300336
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGADIIA--PSEMM----DGRVQEIRKKLDSHGHINVGIMPYV  204 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA--PSdMM----DGrV~aIR~~Ld~~g~~~~~ImsYs  204 (337)
                       ||     . ...+++    +.|....++|||.+.  |.--.    +|-+...|..-+.   .+.+||=|-
T Consensus        77 -vg-----~-~t~~ai----~la~~A~~~Gadai~v~pPyy~~~~~~~l~~~~~~ia~a---~~lPi~lYn  133 (296)
T PRK03620         77 -AG-----G-GTAQAI----EYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKS---TDLGVIVYN  133 (296)
T ss_pred             -CC-----C-CHHHHH----HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEC
T ss_conf             -77-----5-379999----999999982999899669867899999999999999983---189977517


No 58 
>pfam00016 RuBisCO_large Ribulose bisphosphate carboxylase large chain, catalytic domain. The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.
Probab=88.36  E-value=2.5  Score=23.47  Aligned_cols=143  Identities=15%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
Q ss_conf             99999999999999628973524667677999999999877885773003366643543010167531024467777443
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY  232 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sY  232 (337)
                      .|-+.+++++..++..|.|+|-                |.+...+-+-+.+.-.+.-.     .+|++-+..-.|.|+-|
T Consensus        27 ls~~~~a~~~~e~~~gGvD~iK----------------DDE~l~~~~~~p~~eRv~~~-----~~a~~~a~~eTG~~~~y   85 (309)
T pfam00016        27 LSAKNYGRAVYECLRGGLDFTK----------------DDENINSQPFMRWRDRFLFV-----AEAINRAQAETGEVKGH   85 (309)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEE----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCEEE
T ss_conf             9989999999999704874303----------------77767897776689999999-----99999999986982289


Q ss_pred             CCCCCHH--HHHHHHHHHHHHCCCCEEEECC---CHHHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHHHCCCCCHHHH
Q ss_conf             1572114--7889888876640898799553---114589999999624998999-934618999999998889788999
Q gi|255764463|r  233 YLDPANV--QEAIREASIDIQESADMLLVKP---GLPYLDVCFRIKEKFGLPTFA-YQVSGEYAMIKAASLQGWINKNDA  306 (337)
Q Consensus       233 Qmd~~n~--~eA~~e~~~D~~EGAD~lMVKP---a~~yLDii~~~k~~~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~  306 (337)
                      -.|....  .|-++-++.=++.|+..+||-.   |+..|--+++..+...+|+-+ ...+|-|.-   .-..|+ +.. +
T Consensus        86 ~~NiTa~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~al~~l~~~~r~~~~~lh~Hra~~ga~tr---~~~~Gi-~~~-v  160 (309)
T pfam00016        86 YLNVTADTMEEMYKRAEYAKELGSPIIMHDLLTGGYTANTSLATWARDNGMLLHIHRAGHAVYDR---QKNHGI-HFR-V  160 (309)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHC---CCCCCC-CHH-H
T ss_conf             97215897999999999999949971137887266288999999887629567603440034205---876765-199-9


Q ss_pred             HHHHHHHHHHHCCCEEEE
Q ss_conf             999999997726999982
Q gi|255764463|r  307 MMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       307 ~~E~l~~~kRAGAd~Iit  324 (337)
                       +  ..-.+=||+|.|.+
T Consensus       161 -l--~Kl~RLaG~D~ih~  175 (309)
T pfam00016       161 -L--AKWLRLSGGDHIHT  175 (309)
T ss_pred             -H--HHHHHHCCCCCCCC
T ss_conf             -9--99999758770215


No 59 
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=87.19  E-value=2.9  Score=23.01  Aligned_cols=107  Identities=24%  Similarity=0.267  Sum_probs=54.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCC
Q ss_conf             86328899999999999988893676330256334554454215765379999999997301447986133271001143
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGH  140 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGH  140 (337)
                      |...|+-+.+-+.++++.+.||--|-+|-    ++-+-         .=+--+|.+++++-    -++..|+| ||-+  
T Consensus       623 gY~nyPDnVi~~Fvkqaa~~GIDvFRiFD----sLNwv---------~~M~vaidAV~e~g----kv~EatiC-YTGD--  682 (1149)
T COG1038         623 GYKNYPDNVIREFVKQAAKSGIDVFRIFD----SLNWV---------EQMRVAIDAVREAG----KVAEATIC-YTGD--  682 (1149)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEH----HHCCH---------HHCHHHHHHHHHCC----CEEEEEEE-ECCC--
T ss_conf             76779668999999998766964898410----01025---------43445899998629----84799887-3056--


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC--------HHHHHHHHHH
Q ss_conf             10013654462899999999999999628973524667677--------9999999998
Q gi|255764463|r  141 DGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG--------RVQEIRKKLD  191 (337)
Q Consensus       141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG--------rV~aIR~~Ld  191 (337)
                        |++.+.-.  -||+.+.++|.-.-++||+|+|--||---        -|+++|+..|
T Consensus       683 --ildp~r~k--Y~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~d  737 (1149)
T COG1038         683 --ILDPGRKK--YTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVD  737 (1149)
T ss_pred             --CCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             --67877644--44899999999999667727876333421476999999999987448


No 60 
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.19  E-value=1.8  Score=24.39  Aligned_cols=156  Identities=16%  Similarity=0.223  Sum_probs=80.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHC
Q ss_conf             8786328899999999999988893676330256334554454215765379999999997301-447986133271001
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTI  137 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~  137 (337)
                      +-.......+.+.+.++.+.+.|+..|.+++.+-+..     +-+..+   -.+.++...+..+ .+-||+-|       
T Consensus        17 F~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~-----~Ls~eE---r~~l~~~~~~~~~g~~~vi~gv-------   81 (296)
T TIGR03249        17 FDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFF-----SLTPAE---YEQVVEIAVSTAKGKVPVYTGV-------   81 (296)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-----HCCHHH---HHHHHHHHHHHCCCCCEEECCC-------
T ss_conf             6898787999999999999977999899783051666-----589999---9999999999838984151278-------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCCC----CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH
Q ss_conf             143100136544628999999999999996289735--246676----77999999999877885773003366643543
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADII--APSEMM----DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF  211 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdMM----DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f  211 (337)
                               |. .-.+++    +.|-...++|+|.|  .|.-..    +|-+...++..+.   .+.+||-|.  +    
T Consensus        82 ---------g~-~t~~ai----~la~~a~~~Gad~v~v~pPyy~~~~~~~l~~~f~~ia~a---~~~pi~lYn--~----  138 (296)
T TIGR03249        82 ---------GG-NTSDAI----EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCES---TDLGVIVYQ--R----  138 (296)
T ss_pred             ---------CH-HHHHHH----HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEC--C----
T ss_conf             ---------61-299999----999999875999789779988999999999999999971---599778730--7----


Q ss_pred             HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             010167531024467777443157211478898888766408987995531145899999996249
Q gi|255764463|r  212 YGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG  277 (337)
Q Consensus       212 YgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~  277 (337)
                                 |.+       -+++    +-+.+...   +--.++-||=+-.-++-+.++.+...
T Consensus       139 -----------~~~-------~~~~----~~l~~L~~---~~p~i~giK~s~~d~~~~~~~~~~~~  179 (296)
T TIGR03249       139 -----------DNA-------VLNA----DTLERLAD---RCPNLVGFKDGIGDMEQMIEITQRLG  179 (296)
T ss_pred             -----------CCC-------CCCH----HHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHCC
T ss_conf             -----------787-------8799----99999981---57987999977668999999999739


No 61 
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=85.87  E-value=2.8  Score=23.06  Aligned_cols=163  Identities=13%  Similarity=0.113  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf             328899999999999988893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc  141 (337)
                      .....+.+.+.++.+.+.|+..|.+.+..-+-.     +-+..+   -.+.++...+..+ .+-|++-|.-         
T Consensus        17 g~iD~~~l~~~v~~l~~~Gv~Gi~~~GstGE~~-----~Ls~~E---r~~v~~~~~~~~~~~~pvi~gv~~---------   79 (292)
T PRK03170         17 GSVDFAALRKLVDYQIANGTDGLVVVGTTGESP-----TLTHEE---HEELIRAVVEAVNGRVPVIAGTGS---------   79 (292)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECEECCCCC-----CCCHHH---HHHHHHHHHHHCCCCCEEEECCCC---------
T ss_conf             695999999999999977999999683241411-----289999---999999999873897128843787---------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECC---CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf             00136544628999999999999996289735---246---676779999999998778857730033666435430101
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADII---APS---EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY  215 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APS---dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF  215 (337)
                                 .+...-.+.|...+++|||.|   .|.   --.||-+..-+...+.   .+.+|+=|-.          
T Consensus        80 -----------~~t~~~i~~a~~A~~~Gadav~v~~P~y~~~s~~~l~~~f~~ia~~---~~~Pi~lYn~----------  135 (292)
T PRK03170         80 -----------NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEA---TDLPIILYNV----------  135 (292)
T ss_pred             -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC----------
T ss_conf             -----------6799999999989875999899617768899999999999999863---5997698737----------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             6753102446777744315721147889888876640898799553114589999999624998999934
Q gi|255764463|r  216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQV  285 (337)
Q Consensus       216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqV  285 (337)
                             |..    ..+.+++    +-+++.    .|=-.++-+|=+-+-++-+.++.+..+-.+..|.-
T Consensus       136 -------P~~----tg~~l~~----~~l~~L----~~~~nv~giKdss~d~~~~~~~~~~~~~~~~v~~G  186 (292)
T PRK03170        136 -------PGR----TGVDILP----ETVARL----AEHPNIVGIKEATGDLERVSELRELCPDDFAVYSG  186 (292)
T ss_pred             -------CCC----CCCCCCH----HHHHHH----HCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEECC
T ss_conf             -------863----2767699----999998----17899899996999999999999866987367458


No 62 
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=85.73  E-value=0.87  Score=26.54  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      +.+++..++-+++..+. +.- +=. ++| --|+         .|  .++||.+|+.||+-.|++|.=.+-         
T Consensus        12 ~~~l~~Al~ia~~~~~~-vdi-iEv-Gtp-Li~~---------~G--~~~V~~lr~~~p~k~I~aDlK~~D---------   67 (216)
T PRK13306         12 NQDLDSALEDAKKVAEE-VDI-IEV-GTI-LCLA---------EG--MKAVRVLRALYPDKIIVADTKIAD---------   67 (216)
T ss_pred             CCCHHHHHHHHHHHHCC-CCE-EEE-CCH-HHHH---------HC--HHHHHHHHHHCCCCEEEEEEEECC---------
T ss_conf             89999999999972322-899-996-859-9998---------58--999999998789997999753236---------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             136544628999999999999996289735246676
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM  179 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM  179 (337)
                        -|     .|.   ++++   ++||||++.=+...
T Consensus        68 --~g-----~~e---a~~a---~~aGAd~vtV~g~a   90 (216)
T PRK13306         68 --AG-----KIL---AKMA---FEAGADWVTVICAA   90 (216)
T ss_pred             --CC-----HHH---HHHH---HHCCCCEEEEECCC
T ss_conf             --53-----899---9999---97289889995668


No 63 
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain.  Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=85.16  E-value=3.6  Score=22.33  Aligned_cols=108  Identities=15%  Similarity=0.097  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEEE-------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH
Q ss_conf             999999999988893676330-------------256334554454215765379999999997301-447986133271
Q gi|255764463|r   69 VAVEKIKQVADLGIPAIAIFP-------------NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP  134 (337)
Q Consensus        69 ~L~~eie~~~~lGI~av~LFp-------------~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~  134 (337)
                      .-.+.++.+.+.|.-.|-|-+             .. +.-.|+.|-.--|.--|+...|++||+.++ |..|..=+..++
T Consensus       151 ~f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~-N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~  229 (382)
T cd02931         151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS  229 (382)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCC-CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999984999899624530358998548735-8988645898788561899999999997098873899965633


Q ss_pred             HHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             001143100136-5446289999999999999962897352466
Q gi|255764463|r  135 FTIHGHDGILCD-GEIVNDETIELISHAAVIQADAGADIIAPSE  177 (337)
Q Consensus       135 YT~hGHcGi~~~-g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd  177 (337)
                      |-....+|.+.. .....-.|++-..+.+-.+.++|.|++--|.
T Consensus       230 ~~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~  273 (382)
T cd02931         230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA  273 (382)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             45665457885777888763599999999999983988896477


No 64 
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.99  E-value=1.7  Score=24.53  Aligned_cols=87  Identities=26%  Similarity=0.408  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      ..+++..++-++++.+ ++.   .| .+        |.+-+...|  .+.|+.||+.||+..|++|.=++-         
T Consensus         8 ~~~~~~A~~i~~~~~~-~v~---~i-kv--------G~~L~~~~G--~~~v~~lk~~~p~~~I~~DlK~~D---------   63 (206)
T TIGR03128         8 LLDIEEALELAEKVAD-YVD---II-EI--------GTPLIKNEG--IEAVKEMKEAFPDRKVLADLKTMD---------   63 (206)
T ss_pred             CCCHHHHHHHHHHHCC-CCC---EE-EE--------CCHHHHHHC--HHHHHHHHHHCCCCEEEEEEEECC---------
T ss_conf             9999999999997035-562---99-98--------969999768--999999998789997999950447---------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-----CCCCCCCHHHHHH
Q ss_conf             1365446289999999999999962897352-----4667677999999
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIA-----PSEMMDGRVQEIR  187 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-----PSdMMDGrV~aIR  187 (337)
                                |-..   .+-..+++|||++-     +.+||..-+.+.+
T Consensus        64 ----------~g~~---~~~~~~~~Gad~itVh~~~~~~ti~~a~~~a~   99 (206)
T TIGR03128        64 ----------AGEY---EAEQAFAAGADIVTVLGVADDATIKGAVKAAK   99 (206)
T ss_pred             ----------CHHH---HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             ----------4389---99999972898999943489799999999999


No 65 
>PRK01362 putative translaldolase; Provisional
Probab=84.93  E-value=3.7  Score=22.26  Aligned_cols=94  Identities=22%  Similarity=0.427  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      .+.+.++++.+++.++|=+-  .+ +||-.           .+|+  +|++.+++.-  +-+-+-.|             
T Consensus        61 ~~~~~m~~qA~~l~~~~~nv--~V-KIP~t-----------~~Gl--~ai~~L~~~G--i~vn~Tai-------------  109 (214)
T PRK01362         61 LDAEGMIKEGRELAKIAPNV--VV-KIPMT-----------TEGL--KAVKALSKEG--IKTNVTLC-------------  109 (214)
T ss_pred             CHHHHHHHHHHHHHHHCCCE--EE-ECCCC-----------HHHH--HHHHHHHHCC--CCEEEEEC-------------
T ss_conf             41999999999999848776--99-81896-----------6699--9999999849--97576645-------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-CCC-----CC--HHHHHHHHHHHCCCCCCCEEC
Q ss_conf             36544628999999999999996289735246-676-----77--999999999877885773003
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADIIAPS-EMM-----DG--RVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-dMM-----DG--rV~aIR~~Ld~~g~~~~~Ims  202 (337)
                                  .-..||+.-|+||||+|||= +.|     ||  .|..|++.++.+|+ ++-||.
T Consensus       110 ------------~s~~Qa~~Aa~aga~yispy~gR~~d~G~Dg~~~i~~i~~~~~~~~~-~tkIL~  162 (214)
T PRK01362        110 ------------FSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF-ETEIIA  162 (214)
T ss_pred             ------------CCHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf             ------------88999999987599689863121865589828999999999996399-813752


No 66 
>PRK09275 aspartate aminotransferase; Provisional
Probab=84.91  E-value=1.7  Score=24.51  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=42.4

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC-------------CCCHHHC
Q ss_conf             999999998889367633025633455445421576537999999999730144798613-------------3271001
Q gi|255764463|r   71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDV-------------ALDPFTI  137 (337)
Q Consensus        71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DV-------------cLc~YT~  137 (337)
                      -+|++++.+-.|+  +|| .|.+   ++-.|-+++++ -+.+-...+|+.-|||.||||=             +.|||++
T Consensus       235 d~EleKL~DP~IK--Alf-~VNP---sNP~S~~ls~e-~l~~i~~IV~~~nPdLmIiTDDVYgTF~~~F~Sl~a~~P~NT  307 (531)
T PRK09275        235 DKELEKLRDPSIK--ALF-VVNP---SNPPSVAMSDE-SLEKIADIVKEDRPDLMIITDDVYGTFVDDFRSLFAELPYNT  307 (531)
T ss_pred             HHHHHHHCCCCCE--EEE-EECC---CCCCCCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHCCCCE
T ss_conf             8999874497711--899-9899---99866656999-999999999742998799954653226456463656488754


Q ss_pred             CC
Q ss_conf             14
Q gi|255764463|r  138 HG  139 (337)
Q Consensus       138 hG  139 (337)
                      -+
T Consensus       308 i~  309 (531)
T PRK09275        308 LL  309 (531)
T ss_pred             EE
T ss_conf             78


No 67 
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=84.31  E-value=1.6  Score=24.80  Aligned_cols=49  Identities=29%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECC-CCC-----CC--HHHHHHHHHHHCCCCCCCEECH
Q ss_conf             99999999999996289735246-676-----77--9999999998778857730033
Q gi|255764463|r  154 TIELISHAAVIQADAGADIIAPS-EMM-----DG--RVQEIRKKLDSHGHINVGIMPY  203 (337)
Q Consensus       154 Tl~~L~k~Al~~A~AGaDivAPS-dMM-----DG--rV~aIR~~Ld~~g~~~~~ImsY  203 (337)
                      |+---..||+.-|+||||+|||= +=|     ||  .|..|++.++.+|+. +-||.=
T Consensus       109 Tavys~~Qa~~Aa~aGA~YvsPyvGR~~d~G~Dg~~~i~~i~~~~~~~~~~-tkILaA  165 (220)
T PRK12655        109 TAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPE-SMVLAA  165 (220)
T ss_pred             EECCCHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CEEEEE
T ss_conf             851789999999985997896321057555898489999999999975999-689998


No 68 
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=84.02  E-value=1.9  Score=24.28  Aligned_cols=45  Identities=20%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHCCCCEEECC-----CC-CCC--HHHHHHHHHHHCCCCCCCEECH
Q ss_conf             9999999996289735246-----67-677--9999999998778857730033
Q gi|255764463|r  158 ISHAAVIQADAGADIIAPS-----EM-MDG--RVQEIRKKLDSHGHINVGIMPY  203 (337)
Q Consensus       158 L~k~Al~~A~AGaDivAPS-----dM-MDG--rV~aIR~~Ld~~g~~~~~ImsY  203 (337)
                      -..||+.-|+||||+|||=     |. .||  .|..|++.++.+|+ ++-||.=
T Consensus       115 s~~Qa~~Aa~aGA~yvsPf~GRi~d~G~Dg~~~i~~i~~~~~~~~~-~tkIL~A  167 (222)
T PRK12656        115 TTFQGLLAIEAGADYLAPYYNRMENLNIDSEAVIGQLAEAINRENS-NSKILAA  167 (222)
T ss_pred             CHHHHHHHHHCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHCCC-CCEEEEE
T ss_conf             9999999998699899971464875499928999999999985599-9619865


No 69 
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=83.99  E-value=3.4  Score=22.54  Aligned_cols=114  Identities=12%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCC
Q ss_conf             32889999999999998-8893676330256334554454215765379999999997301-447986133271001143
Q gi|255764463|r   63 MRMSIDVAVEKIKQVAD-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGH  140 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGH  140 (337)
                      .+...+.+.+.++.+++ .|+.+|.+++...+-.     +-+..   =-.+.++...+..+ .+-||+-|.        +
T Consensus        19 g~iD~~~l~~~v~~~i~~~Gv~Gi~~~GstGE~~-----~Ls~~---Er~~l~~~~~~~~~~r~pvi~gv~--------~   82 (294)
T PRK04147         19 GQIDEQGLRQLVRFNIEKQGIDGLYVGGSTGEAF-----LLSTE---ERKQVLEIVAEEAKGKIKLIAQVG--------S   82 (294)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH-----HCCHH---HHHHHHHHHHHHCCCCCEEEECCC--------C
T ss_conf             5969999999999999877998999795131643-----48999---999999999998189732763478--------8


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCC---CCCCHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf             1001365446289999999999999962897352---466---767799999999987788577300336664
Q gi|255764463|r  141 DGILCDGEIVNDETIELISHAAVIQADAGADIIA---PSE---MMDGRVQEIRKKLDSHGHINVGIMPYVAKF  207 (337)
Q Consensus       141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKf  207 (337)
                                  .+.+...+++-...++|+|.|.   |.=   ..++-+...+...++   .+.+||-|-.-.
T Consensus        83 ------------~st~~ai~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~va~a---~~~pi~iYn~P~  140 (294)
T PRK04147         83 ------------VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDS---ADNPMIVYNIPA  140 (294)
T ss_pred             ------------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCC
T ss_conf             ------------8889999999999975998899727867789989999999999850---499778875675


No 70 
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain.  DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.90  E-value=4.1  Score=21.97  Aligned_cols=92  Identities=15%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             HHHHHHHHHCCCCEEEEEE------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHC
Q ss_conf             9999999988893676330------------256334554454215765379999999997301-447986133271001
Q gi|255764463|r   71 VEKIKQVADLGIPAIAIFP------------NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTI  137 (337)
Q Consensus        71 ~~eie~~~~lGI~av~LFp------------~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~  137 (337)
                      .+.++.+.+.|.-.|-|-.            .. ++-.|+.|-.--|.--|+...|++|++.++ |..|..=+..+++-.
T Consensus       140 ~~AA~rA~~AGfDgVEIH~ahGyLl~qFLSp~~-N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~  218 (353)
T cd02930         140 ARCAALAREAGYDGVEIMGSEGYLINQFLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE  218 (353)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             999999998299989962567614877338754-7885745798788879999999999997099874999736012689


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             143100136544628999999999999996289735246
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPS  176 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS  176 (337)
                      .         -++.|+++    +.+..+.++|.|+|--|
T Consensus       219 ~---------G~~~~e~~----~~~~~l~~~GvD~i~vs  244 (353)
T cd02930         219 G---------GSTWEEVV----ALAKALEAAGADILNTG  244 (353)
T ss_pred             C---------CCCHHHHH----HHHHHHHHCCCCEEEEC
T ss_conf             9---------98999999----99999998199999963


No 71 
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent.   The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.64  E-value=4.6  Score=21.64  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCH
Q ss_conf             4589999999624998999934618999999998889788
Q gi|255764463|r  264 PYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINK  303 (337)
Q Consensus       264 ~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~  303 (337)
                      +.++..+.+|+.+.+||.+-.-=..-.+...+-+.|..|.
T Consensus       277 ~~~~~a~~ik~~~~ipvi~~G~i~~p~~ae~~l~~G~~Dl  316 (336)
T cd02932         277 YQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADL  316 (336)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             2679999999878983999799899999999998799400


No 72 
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.40  E-value=4.7  Score=21.58  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             8988887664089879955311458999999962499899
Q gi|255764463|r  242 AIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTF  281 (337)
Q Consensus       242 A~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~  281 (337)
                      -+.++..-++-||+.+.+.=-  -.++-+.+.+...+|+.
T Consensus       158 l~~dA~ale~AGa~~ivlE~v--p~~la~~It~~~~IPtI  195 (240)
T cd06556         158 LIADALAYAPAGADLIVMECV--PVELAKQITEALAIPLA  195 (240)
T ss_pred             HHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHCCCCCEE
T ss_conf             999999998479849987458--49999999956999899


No 73 
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=81.88  E-value=4.4  Score=21.77  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf             328899999999999988893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc  141 (337)
                      .+...+.+.+.++.+.+.|+..+.+++.+-+-..     -...+   -.+.++...+..+ .+-|++-|.-         
T Consensus        17 g~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~-----Ls~~E---r~~v~~~~~~~~~~~~pvi~gv~~---------   79 (289)
T pfam00701        17 GRLDEEALRKLIEFLINKGADGLFVGGTTGESFT-----LSTEE---HEQLIEITVDEAKGRIPVIAGTGS---------   79 (289)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECEECCCCCC-----CCHHH---HHHHHHHHHHHCCCCCEEEECCCC---------
T ss_conf             5969999999999999779999997836403113-----88999---999999999981998628637888---------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHH
Q ss_conf             001365446289999999999999962897352---4667---677999999999877885773003366
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVA  205 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsa  205 (337)
                                 .+.....+++....++|||.|.   |.--   -++-+..-+...+.   .+.+||=|-.
T Consensus        80 -----------~st~~~i~~a~~A~~~Gad~i~v~pP~y~~~~~~~i~~~~~~va~a---~~lPi~iYn~  135 (289)
T pfam00701        80 -----------NSTREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHFKAIAAA---TDLPVILYNV  135 (289)
T ss_pred             -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC
T ss_conf             -----------7899999999999974999788779988899999999999999831---5997799715


No 74 
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.64  E-value=5  Score=21.40  Aligned_cols=174  Identities=20%  Similarity=0.240  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCHHHCCCCCCC
Q ss_conf             8999999999999888936763302563345544542157653799999999973014--47986133271001143100
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi  143 (337)
                      +.+.+.+.++++.+.|+.+|.++|                      ..++..++..++  +.+.+=|. .|   +|.   
T Consensus        11 t~~~i~~~~~~a~~~~~~av~v~p----------------------~~v~~~~~~l~~~~~~v~~vv~-fp---~g~---   61 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP----------------------GYVRLAADALAGSDVPVIVVVG-FP---TGL---   61 (201)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECH----------------------HHHHHHHHHCCCCCCCEEEEEC-CC---CCC---
T ss_conf             999999999999862982999889----------------------9999999980899983899958-89---999---


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCE---EEC-CCCC----CCHHHHHHHHHHHC--CCCCCCEECHHHHHHHHHHC
Q ss_conf             13654462899999999999999628973---524-6676----77999999999877--88577300336664354301
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADI---IAP-SEMM----DGRVQEIRKKLDSH--GHINVGIMPYVAKFNSSFYG  213 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDi---vAP-SdMM----DGrV~aIR~~Ld~~--g~~~~~ImsYsaKfaS~fYg  213 (337)
                            ...++.-..++.|+.   .|||-   |.+ +-..    +.....|++..+..  |.. +.+.-+..        
T Consensus        62 ------~~~~~k~~e~~~ai~---~GAdeid~v~~~~~~~~~~~~~~~~ei~~v~~~~~~g~~-~kvi~e~~--------  123 (201)
T cd00945          62 ------TTTEVKVAEVEEAID---LGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLP-LKVILETR--------  123 (201)
T ss_pred             ------CCHHHHHHHHHHHHH---HCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCCC-EEEEECCC--------
T ss_conf             ------977799999999999---099989974056777566889999999999997357983-79996167--------


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             0167531024467777443157211478898888766408987995531----145899999996249989999346189
Q gi|255764463|r  214 PYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQVSGEY  289 (337)
Q Consensus       214 PFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYqVSGEY  289 (337)
                                        |.   .+.++-......-.+-|||++=...|    ..-++-++.+++...-++... +||  
T Consensus       124 ------------------~l---~~~~~i~~a~~~~~~~GadfvKtstG~~~~~at~~~v~~m~~~~~~~~~vk-~sG--  179 (201)
T cd00945         124 ------------------GL---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVK-AAG--  179 (201)
T ss_pred             ------------------CC---CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE-CCC--
T ss_conf             ------------------78---999999999999998099879855887889899999999999828786386-358--


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999998889788999999999997726999982
Q gi|255764463|r  290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       290 ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                                -+.    .+|....+..|||+.|.|
T Consensus       180 ----------Gi~----~~~~a~~~l~aGa~~igt  200 (201)
T cd00945         180 ----------GIK----TLEDALAAIEAGADGIGT  200 (201)
T ss_pred             ----------CCC----CHHHHHHHHHHCCCEEEC
T ss_conf             ----------979----999999999828653537


No 75 
>PRK01060 endonuclease IV; Provisional
Probab=81.58  E-value=5  Score=21.39  Aligned_cols=209  Identities=17%  Similarity=0.194  Sum_probs=109.1

Q ss_pred             HHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             89998634778887733116667589881104888786328899999999999988893676330256334554454215
Q gi|255764463|r   25 WIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHII  104 (337)
Q Consensus        25 ~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~  104 (337)
                      ..|+..+++.+.+.    ++++|..= .-..=..-|.++..|++.+.++++.+..+|++.+.+-|+  ...+...=.+++
T Consensus        51 ~f~~~~~~~~~~~~----~iv~Ha~Y-lINLasp~~~~~~kS~~~l~~el~r~~~lG~~~vV~HpG--s~~g~~~~~~gi  123 (281)
T PRK01060         51 AFKAACEKYGISPE----DILVHAPY-LINLGNPNPEKLEKSRDALIDEIERCEALGAKLLNFHPG--SHLGAIDEADCL  123 (281)
T ss_pred             HHHHHHHHCCCCCC----CEEEECCC-EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCHHHHH
T ss_conf             99999998199975----45752453-232689987899999999999999999809985984576--336888799999


Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH----------H----HH-HHCC
Q ss_conf             7653799999999973014479861332710011431001365446289999999999----------9----99-9628
Q gi|255764463|r  105 DPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAA----------V----IQ-ADAG  169 (337)
Q Consensus       105 n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~A----------l----~~-A~AG  169 (337)
                      +   -+.++|..+-+.-++      |-++-=|+-|.-.-+.       .|++-|+.+-          +    +| -.||
T Consensus       124 ~---~i~~~l~~~l~~~~~------~~ilLEn~AGqG~~lG-------~~~eeL~~ii~~v~~~~rvGvClDTcH~faAG  187 (281)
T PRK01060        124 D---RIAESLNEALDKTQG------VTIVLENTAGQGSELG-------RRFEELARIIDGVEDKSRVGVCLDTCHAFAAG  187 (281)
T ss_pred             H---HHHHHHHHHHHCCCC------CEEEEEECCCCCCCCC-------CCHHHHHHHHHHCCCCCCEEEEEECHHHHHCC
T ss_conf             9---999999999815898------6799972489998268-------78999999999626846448874114344334


Q ss_pred             CCEEECCCCCCCHHHHHHHHHHH-CCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC---HHHHHHHH
Q ss_conf             97352466767799999999987-788577300336664354301016753102446777744315721---14788988
Q gi|255764463|r  170 ADIIAPSEMMDGRVQEIRKKLDS-HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPA---NVQEAIRE  245 (337)
Q Consensus       170 aDivAPSdMMDGrV~aIR~~Ld~-~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~---n~~eA~~e  245 (337)
                      -|+.      +| +...-+.+|+ -|+..+..+-               .=+|...+ |.|+--.-+..   -..++++.
T Consensus       188 ydi~------~~-~~~~~~~fd~~iGl~~l~~iH---------------lNDSk~~~-GS~kDRHe~IG~G~IG~~~f~~  244 (281)
T PRK01060        188 YDLR------ED-FEGVLNEFDKIVGLDYLKVMH---------------LNDSKNPL-GSRKDRHANLGEGTIGFDALRY  244 (281)
T ss_pred             CCHH------HH-HHHHHHHHHHHCCHHHEEEEE---------------ECCCCCCC-CCCCCCCCCCCCCCCCHHHHHH
T ss_conf             5378------89-999999999850765555888---------------45887755-6776645567998649899999


Q ss_pred             HHHHHH-CCCCEEEECC-CHHHHHHHHHHHHHCCCC
Q ss_conf             887664-0898799553-114589999999624998
Q gi|255764463|r  246 ASIDIQ-ESADMLLVKP-GLPYLDVCFRIKEKFGLP  279 (337)
Q Consensus       246 ~~~D~~-EGAD~lMVKP-a~~yLDii~~~k~~~~~P  279 (337)
                      +..|.. .+..+++=-| .-+|-.=|..+|++...|
T Consensus       245 ~~~~~~~~~iP~ILETP~~~~y~~EI~~Lr~~~~~~  280 (281)
T PRK01060        245 IVHDPRFDGIPKILETPYVGIWKEEIAMLREQQFDP  280 (281)
T ss_pred             HHCCHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             980952549988996899841199999999556899


No 76 
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726    Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=81.35  E-value=4.4  Score=21.75  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=54.7

Q ss_pred             CCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-ECCCCCHH---HC
Q ss_conf             3288999999999999888-9367633025633455445421576537999999999730144798-61332710---01
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLG-IPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGII-TDVALDPF---TI  137 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lG-I~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi-~DVcLc~Y---T~  137 (337)
                      .++.-+++.+|++.+.+.| +++|+|--|  ++.+       .-+=.-+.++++.+|+.|+.|.|= ==+--++|   +.
T Consensus       103 ~~Ln~~Ei~~E~~aI~k~gPf~~iLlvtG--E~e~-------~~g~~Yi~~~~~l~k~~F~~l~iEv~Pl~~eeYk~L~~  173 (378)
T TIGR02351       103 KKLNEEEIEREIEAIKKSGPFKEILLVTG--ESEK-------AAGVEYIEEAIKLAKEYFSSLAIEVQPLTEEEYKKLKE  173 (378)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHEEEECC--CCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf             04888899999999862077013001115--7775-------58837899999998752785448873077045688977


Q ss_pred             CCCCCCCC
Q ss_conf             14310013
Q gi|255764463|r  138 HGHDGILC  145 (337)
Q Consensus       138 hGHcGi~~  145 (337)
                      +|-|||+.
T Consensus       174 ~Gld~V~V  181 (378)
T TIGR02351       174 AGLDGVTV  181 (378)
T ss_pred             CCCCEEEE
T ss_conf             08881588


No 77 
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=79.70  E-value=2.6  Score=23.33  Aligned_cols=90  Identities=22%  Similarity=0.329  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-CCC----
Q ss_conf             5379999999997301447986133271001143100--136544628999999999999996289735246-676----
Q gi|255764463|r  107 DNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIAPS-EMM----  179 (337)
Q Consensus       107 dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-dMM----  179 (337)
                      ++.+-+|-+ |.+..|+++|=.     |-|..|-.-+  +....|.--.|+-.-..||+.-|+||||+|||= .=|    
T Consensus        66 e~M~~~a~~-l~~~~~nvvVKI-----P~t~~Gl~ai~~L~~~Gi~vn~Tavys~~Qa~~Aa~aGA~yvsPyvgR~~d~g  139 (220)
T PRK12653         66 EGMVNDARK-LRSIIADIVVKV-----PVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQG  139 (220)
T ss_pred             HHHHHHHHH-HHHHCCCEEEEE-----CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEHHHCC
T ss_conf             999999999-987357808994-----88578999999998829877852106799999999859988844425064338


Q ss_pred             -CC--HHHHHHHHHHHCCCCCCCEECH
Q ss_conf             -77--9999999998778857730033
Q gi|255764463|r  180 -DG--RVQEIRKKLDSHGHINVGIMPY  203 (337)
Q Consensus       180 -DG--rV~aIR~~Ld~~g~~~~~ImsY  203 (337)
                       ||  .|..|++.++.+|+. +-||.=
T Consensus       140 ~Dg~~~i~~i~~~~~~~~~~-tkILaA  165 (220)
T PRK12653        140 GSGIQTVTDLHQLLKMHAPQ-AKVLAA  165 (220)
T ss_pred             CCHHHHHHHHHHHHHHCCCC-CEEEEE
T ss_conf             98266899999999976999-889998


No 78 
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=79.04  E-value=0.27  Score=30.00  Aligned_cols=139  Identities=21%  Similarity=0.272  Sum_probs=61.6

Q ss_pred             CCCCCCHHHH----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CH---HHHHHHHHHHHHCCCEEEECCCC
Q ss_conf             8632889999----9999999988893676330256334554454215765-37---99999999973014479861332
Q gi|255764463|r   61 DVMRMSIDVA----VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NL---INEGICAIKKNIPNIGIITDVAL  132 (337)
Q Consensus        61 Gv~R~Sid~L----~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-gl---v~rAIr~IK~~fpdl~vi~DVcL  132 (337)
                      |+.|-..|..    -+...++++.|.-.=-++|+.-+.+|   |....+.| ++   -...+..+|-.|.+-+.+|--. 
T Consensus       175 gisRe~qD~~A~~Sh~rA~~A~~~g~f~~EI~Pv~v~~~~---~~~~~~~De~~r~~t~e~l~~L~p~f~~~GtvTagn-  250 (397)
T PRK06954        175 AFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKK---GDTVIDRDEQPFKANPEKIPTLKPAFSKTGTVTAAN-  250 (397)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC---CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-
T ss_conf             9998786999999999999998759962006889843677---885666776655689989833687524567503557-


Q ss_pred             CHHHCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHH
Q ss_conf             71001143100136544628999999999----9999962897352466767799999999987788--57730033666
Q gi|255764463|r  133 DPFTIHGHDGILCDGEIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAK  206 (337)
Q Consensus       133 c~YT~hGHcGi~~~g~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaK  206 (337)
                      |+-.++|=+.++    +-..+..+.|.-.    -+.++.+|+|   |+.|.-|-|.++|++|+.+|.  .|+-+.-.-==
T Consensus       251 ss~~~DGAAavl----l~s~~~a~~~gl~p~a~i~~~~~~~~~---p~~~~~~pv~A~~k~l~~agl~~~Did~~EinEA  323 (397)
T PRK06954        251 SSSISDGAAALV----MMRASTAKRLGLAPLARVVGHSTFAQA---PSKFTTAPVGAIRKLFEKNGWRAAEVDLYEINEA  323 (397)
T ss_pred             CCCCCCHHHHHH----HCCHHHHHHCCCCEEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEHHH
T ss_conf             886655667556----418999997799836999877899618---5763236899999999984999665652354057


Q ss_pred             HHHH
Q ss_conf             4354
Q gi|255764463|r  207 FNSS  210 (337)
Q Consensus       207 faS~  210 (337)
                      ||+.
T Consensus       324 FA~~  327 (397)
T PRK06954        324 FAVV  327 (397)
T ss_pred             HHHH
T ss_conf             7888


No 79 
>pfam02574 S-methyl_trans Homocysteine S-methyltransferase. This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.
Probab=78.61  E-value=6.2  Score=20.75  Aligned_cols=229  Identities=16%  Similarity=0.094  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------CCCEEEECCCCCHHHC
Q ss_conf             9999999999998889367633--025633455445421576537999999999730-------1447986133271001
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIF--PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-------PNIGIITDVALDPFTI  137 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LF--p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-------pdl~vi~DVcLc~YT~  137 (337)
                      .|.+.+.=++-++.|-.-+.-.  ...+..++...-++. .-..+..++++.-|+..       ++..|...  +-||-.
T Consensus        37 Pe~V~~iH~~yi~AGAdvI~TnTy~a~~~~l~~~g~~~~-~~~~~~~~av~lA~~A~~~~~~~~~~~~VaGs--igp~~~  113 (303)
T pfam02574        37 PELIREIHKAYLEAGADIIETNTYQATPIGFADYGLEHL-ELRELNRRAAEIARAAADEYGNTGDKRLVAGS--IGPYGA  113 (303)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCCC
T ss_conf             699999999999807989984666163041545484167-89999999999999999984045886279863--377656


Q ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf             1431001--36544628999999999999996289735246676779-99999999877885773003366643543010
Q gi|255764463|r  138 HGHDGIL--CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP  214 (337)
Q Consensus       138 hGHcGi~--~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP  214 (337)
                      . ++|--  .+..+.-++-.+...+|+..+.++|+|++.-=-|-+-. +.++.+++... +..-.+.|.+.+-.    |-
T Consensus       114 ~-~~~~ey~~~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~~~~~E~~~al~~~~~~-~~~p~~is~~~~~~----~~  187 (303)
T pfam02574       114 T-ADGSEYPGYYGVSFEELKKAHRPQLEGLLDGGVDLLLLETIPDFLEAKAAVRAVEEV-FEAPGWISFPVFDS----GT  187 (303)
T ss_pred             C-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH-CCCCEEEEEEEECC----CE
T ss_conf             6-777667776799999999999999999985799899985028999999999999975-49978987655128----76


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             1675310244677774431572114788988887664089879955---3114589999999624998999934618999
Q gi|255764463|r  215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAM  291 (337)
Q Consensus       215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~~~P~~aYqVSGEYam  291 (337)
                                + .|..+    .....+.+.+...-...|+|.++|-   |.-.-.-+....+.....|+.+|--+|+.  
T Consensus       188 ----------l-~~g~~----~~~~~~~~~~~~~~~~~~~~~iGiNC~~~~~~~~~~~~~~~~~~~~pl~~yPN~g~~--  250 (303)
T pfam02574       188 ----------L-VDGTG----LTLSGATIEAALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSVYPNSGEP--  250 (303)
T ss_pred             ----------E-CCCCC----HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC--
T ss_conf             ----------2-79984----778899999999745778708985167848788999999984599858998379898--


Q ss_pred             HHHHHHCCCCCHHHHHH---HHHHHHHHHCCCEE
Q ss_conf             99999888978899999---99999977269999
Q gi|255764463|r  292 IKAASLQGWINKNDAMM---ESLLAFKRAGCDGI  322 (337)
Q Consensus       292 i~~a~~~g~~d~~~~~~---E~l~~~kRAGAd~I  322 (337)
                       .......|...+....   +.+.-+.++||.+|
T Consensus       251 -~~~~~~~~~~~~~~~~~~~~~~~~w~~~Ga~ii  283 (303)
T pfam02574       251 -YDAGKKEYDGTPDELAPSYWSLKEFVASGARII  283 (303)
T ss_pred             -CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             -779874257997998899999999998399199


No 80 
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=78.33  E-value=6.4  Score=20.70  Aligned_cols=44  Identities=27%  Similarity=0.331  Sum_probs=25.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHH
Q ss_conf             31145899999996249989999346189999999988897889
Q gi|255764463|r  261 PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKN  304 (337)
Q Consensus       261 Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~  304 (337)
                      |..++++..+.+|+.+.+||.+--==..-.....+.+.|+.|.-
T Consensus       269 ~~g~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V  312 (343)
T cd04734         269 PPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMV  312 (343)
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf             76434889999999729859997998999999999987996216


No 81 
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=78.26  E-value=6.4  Score=20.69  Aligned_cols=128  Identities=24%  Similarity=0.254  Sum_probs=79.7

Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             81104888786328899999999999988893676330256334554454215765379999999997301447986133
Q gi|255764463|r   52 TVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        52 ~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      ..++|+-++.+.+ +...+...++.+.++||+.|++--+=|+ .-+..+..    +.--...|+.||....++ .-.-++
T Consensus        77 ~~~~i~Hltc~d~-n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~----~~~s~dLv~lik~~~~~~-f~i~~A  149 (291)
T COG0685          77 GIEPIPHLTCRDR-NRIEIISILKGAAALGIRNILALRGDPP-AGDKPGGK----DLYSVDLVELIKKMRGGI-FDIGVA  149 (291)
T ss_pred             CCCEEEEEECCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCC----CCCHHHHHHHHHHHCCCC-EEEEEE
T ss_conf             9831347514688-9899999999999818855999458987-77887865----468999999999856897-358998


Q ss_pred             CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCC
Q ss_conf             27100114310013654462899999999999999628973524667677-999999999877885773
Q gi|255764463|r  132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVG  199 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~  199 (337)
                      +.|+   ||.- -.+.    +.-+..|.    --.+||||.+=--=.-|. ++..+.+.+...|- +++
T Consensus       150 ~~Pe---~h~~-s~~~----~~d~~~lk----rKv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~-~~p  205 (291)
T COG0685         150 AYPE---GHPE-SKDV----KEDIKRLK----RKVDAGADFFITQFFFDVEAFERFAERVRAAGI-DIP  205 (291)
T ss_pred             ECCC---CCCC-CHHH----HHHHHHHH----HHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCC-CCC
T ss_conf             6788---7844-1005----78999999----998658865764201689999999999986389-985


No 82 
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=77.96  E-value=6.5  Score=20.63  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=18.5

Q ss_pred             HHCCCCEEEECCCH----HHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf             64089879955311----4589999999624-998999934
Q gi|255764463|r  250 IQESADMLLVKPGL----PYLDVCFRIKEKF-GLPTFAYQV  285 (337)
Q Consensus       250 ~~EGAD~lMVKPa~----~yLDii~~~k~~~-~~P~~aYqV  285 (337)
                      ++.|+|+|-|--|-    .-+|.|+.+|..+ ++++.|=+|
T Consensus       236 v~AGvDvlvIDtAHGhS~~vi~~vk~iK~~~p~~~viaGNv  276 (479)
T PRK07807        236 LEAGVDVLVIDTAHGHQEKMLEAIRAVRALDPGVPLVAGNV  276 (479)
T ss_pred             HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf             97699899975457664899999999984089885787432


No 83 
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=77.43  E-value=4.2  Score=21.93  Aligned_cols=103  Identities=28%  Similarity=0.424  Sum_probs=59.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC--C-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC--CC
Q ss_conf             15765379999999997301447986133271001143100--1-3654462899999999999999628973524--66
Q gi|255764463|r  103 IIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI--L-CDGEIVNDETIELISHAAVIQADAGADIIAP--SE  177 (337)
Q Consensus       103 A~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi--~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP--Sd  177 (337)
                      +++-++-+.+|.+ |.+.+++..|+.-+   |-|..|-.-+  + .+| |.--.|+--=..||+.-|+||+++|+|  +-
T Consensus        72 s~d~e~mi~eA~~-L~~~~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgR  146 (239)
T COG0176          72 SFDAEAMIEEARR-LAKLIDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGR  146 (239)
T ss_pred             CCCHHHHHHHHHH-HHHHCCCCCEEEEE---CCCHHHHHHHHHHHHCC-CEEEEEEEECHHHHHHHHHHCCEEEEEECCH
T ss_conf             2368999999999-99864877738994---88887899999999789-7065888846899999998289289751230


Q ss_pred             CCC------CHHHHHHHHHHHCCCCCCCEECHHHHHHHH
Q ss_conf             767------799999999987788577300336664354
Q gi|255764463|r  178 MMD------GRVQEIRKKLDSHGHINVGIMPYVAKFNSS  210 (337)
Q Consensus       178 MMD------GrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~  210 (337)
                      |.|      +-|..+|+.++..+...+.++.=|.+|.-.
T Consensus       147 i~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~~~~~~  185 (239)
T COG0176         147 IDDWGIDGMLGIAEAREIYDYYKQHGAKTLVASARFPNH  185 (239)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf             776166826899999999997360454477766772878


No 84 
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=77.27  E-value=6.8  Score=20.50  Aligned_cols=104  Identities=20%  Similarity=0.287  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH-------HHHCCC
Q ss_conf             2899999999999999628973524667677999999999877885773003366643543010167-------531024
Q gi|255764463|r  151 NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD-------AISTRD  223 (337)
Q Consensus       151 ND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd-------A~~S~p  223 (337)
                      ---+.+..++++--++..|+|+|-                |.+++.            |-=|.||+|       ++.-+-
T Consensus       166 lGl~~e~~a~~~yE~~~GGvD~iK----------------DDEnl~------------s~~f~~~e~R~~~~m~~i~~ae  217 (429)
T COG1850         166 LGLSPEEYAELAYELLSGGVDFIK----------------DDENLT------------SPPFNRFEERVAKIMEAIDKAE  217 (429)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEC----------------CHHHCC------------CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             579989999999999845764441----------------623205------------8656658999999999999988


Q ss_pred             CCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH--CCCCEEE
Q ss_conf             467777443157211-4788988887664089879955311458999999962--4998999
Q gi|255764463|r  224 LLKGDKKTYYLDPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK--FGLPTFA  282 (337)
Q Consensus       224 ~~~gdr~sYQmd~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~--~~~P~~a  282 (337)
                      +..|-|+.|-.+... .+|-+|.+++-.+.|++++||-=--.=.+.++-+++.  ..+|+-|
T Consensus       218 aeTGekk~y~~NITa~~~EM~rrae~a~elG~~~~midi~~~G~~a~q~lre~~d~gl~iha  279 (429)
T COG1850         218 AETGEKKMYAVNITAPCEEMMRRAELAAELGANYVMIDIVVTGFTALQYLREDEDIGLAIHA  279 (429)
T ss_pred             HHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCCCCEEEE
T ss_conf             86386578995046887999999999997299879999873362898998862037944785


No 85 
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=77.27  E-value=5.3  Score=21.24  Aligned_cols=178  Identities=17%  Similarity=0.158  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCC--CCC---CCCCCCC--------HHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             379999999997301447986133271001143--100---1365446--------289999999999999962897352
Q gi|255764463|r  108 NLINEGICAIKKNIPNIGIITDVALDPFTIHGH--DGI---LCDGEIV--------NDETIELISHAAVIQADAGADIIA  174 (337)
Q Consensus       108 glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGH--cGi---~~~g~Id--------ND~Tl~~L~k~Al~~A~AGaDivA  174 (337)
                      ..+.+|++.+|++.++=.-+.-.+..|+|.-++  +|.   +.+ -..        -+...+.+.+.+..+.+||||+|.
T Consensus       119 ~~v~eai~~l~~~l~~~~plig~~~gP~Tla~~l~~G~~~~~~~-l~~~pe~~~~ll~~~t~~~~~~~~~qi~aGad~i~  197 (337)
T pfam01208       119 PYVLEAIRLLRKELGDEVPLIGFVGGPFTLASYLVEGFEKFKKL-MYKDPELVHALLDKLTDAVIEYLKAQIEAGADAIQ  197 (337)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             89999999999975999747986477899999997798999999-99799999999999999999999999982996799


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             46676779999999998778857730033666435430101-67531024467777443157211478898888766408
Q gi|255764463|r  175 PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       175 PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                      -.|-.                  ..+||-  +.--.|..|+ +.....-....+..-.|..- .+ ...+.+...  +-|
T Consensus       198 i~Ds~------------------~~~ls~--~~~~ef~~p~~~~i~~~ik~~~~~~~ilh~c-G~-~~~~~~~l~--~~~  253 (337)
T pfam01208       198 IFDSW------------------AGLLSP--EDFREFVLPYLKRIVDEVKARGPGPVILHIC-GN-GTPILEDMA--ETG  253 (337)
T ss_pred             EECCC------------------CCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CC-HHHHHHHHH--HCC
T ss_conf             83478------------------887898--9999998999999999999868997499857-96-689999998--649


Q ss_pred             CCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CEEEE
Q ss_conf             98799553114589999999624-9989999346189999999988897889999999999977269--99982
Q gi|255764463|r  254 ADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGC--DGIFT  324 (337)
Q Consensus       254 AD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGA--d~Iit  324 (337)
                      +|.+=+-...+    +..+++.+ ++.+. =+++. . ++     .|  +.+++.-|+..+++..+.  .+|+.
T Consensus       254 ~~~~s~d~~~~----l~~~~~~~~~~~i~-GN~dp-~-~l-----~g--t~e~i~~~~~~~l~~~~~~~g~Il~  313 (337)
T pfam01208       254 ADVISLDWTVD----LAEAKRIVGDVALQ-GNLDP-A-LL-----LG--TPEEIEAEVKEILEAAGGGRGHIFN  313 (337)
T ss_pred             CCEEECCCCCC----HHHHHHHCCCCEEE-ECCCH-H-HH-----CC--CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             88884476568----99999976995389-68986-7-85-----69--9999999999999982899998985


No 86 
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=76.64  E-value=7.1  Score=20.38  Aligned_cols=43  Identities=28%  Similarity=0.475  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             14589999999624998999934618999999998889788999999999997726999982
Q gi|255764463|r  263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      .+-+++++.+++.+++|+-+   ||           |.-+.++     +..++..|++.++-
T Consensus       175 G~d~~l~~~i~~~~~~pvi~---sG-----------Gv~s~~d-----i~~l~~~g~~gviv  217 (233)
T cd04723         175 GPDLELLERLAARADIPVIA---AG-----------GVRSVED-----LELLKKLGASGALV  217 (233)
T ss_pred             CCCHHHHHHHHHHCCCCEEE---EC-----------CCCCHHH-----HHHHHHCCCCEEEE
T ss_conf             77999999999868998999---88-----------9999999-----99999789989998


No 87 
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=76.40  E-value=4.2  Score=21.93  Aligned_cols=160  Identities=19%  Similarity=0.294  Sum_probs=103.3

Q ss_pred             EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             66675898811048887863288999999999999-88893676330256334554454215765379999999997301
Q gi|255764463|r   44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP  122 (337)
Q Consensus        44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp  122 (337)
                      +|+.+|-...-.|=+=-+  .-|+-+.++++.+++ +-|+    +|--+- + .|        ..|-|.. -|.+.+-.|
T Consensus        19 ~g~~~GVTTNPsliak~~--n~~f~evl~ei~~~vGd~G~----vsae~~-S-~d--------AegMv~E-ak~La~~~~   81 (216)
T TIGR00875        19 LGILAGVTTNPSLIAKEG--NRSFWEVLKEIQEVVGDEGP----VSAEVI-S-LD--------AEGMVEE-AKELAKLAP   81 (216)
T ss_pred             CCCCCCCCCCHHHHHHCC--CCCHHHHHHHHHHHHCCCCC----EEHHHH-H-HH--------HHHHHHH-HHHHHHHCC
T ss_conf             245477345633420136--88788999999987458885----534343-0-41--------7889999-999997528


Q ss_pred             CCEEEECCCCCHHHCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC---------CCCCCCHHHHHHHHHH
Q ss_conf             4479861332710011431001--3654462899999999999999628973524---------6676779999999998
Q gi|255764463|r  123 NIGIITDVALDPFTIHGHDGIL--CDGEIVNDETIELISHAAVIQADAGADIIAP---------SEMMDGRVQEIRKKLD  191 (337)
Q Consensus       123 dl~vi~DVcLc~YT~hGHcGi~--~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP---------SdMMDGrV~aIR~~Ld  191 (337)
                      +++|=.     |-|++|=--|-  ...-|----|+=-=+.|||.-|+|||.+|+|         -+=| -.|..+++-++
T Consensus        82 nivvKI-----P~T~~GLkAv~~L~~eGI~TnvTlvfsa~QaLlAA~AGA~YVsPfvgRlDdigg~G~-~li~e~~~i~~  155 (216)
T TIGR00875        82 NIVVKI-----PMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGL-KLIEEVKTIFE  155 (216)
T ss_pred             CCEEEE-----CCCHHHHHHHHHHHHCCCCEEEHHEECHHHHHHHHHCCCCEECCHHHHHHHCCCCHH-HHHHHHHHHHH
T ss_conf             978961-----478537999999985798312010235458999998189142440110131277505-78999999997


Q ss_pred             HCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             7788577300336664354301016753102446777744315721
Q gi|255764463|r  192 SHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPA  237 (337)
Q Consensus       192 ~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~  237 (337)
                      .+++. +.|+.=|.|.      | |.+.+|+-.  | =.+-||++.
T Consensus       156 ~h~~~-t~vi~AS~rh------P-~hvle~al~--G-a~~~t~p~~  190 (216)
T TIGR00875       156 NHALD-TEVIAASVRH------P-RHVLEAALI--G-ADIATLPLD  190 (216)
T ss_pred             HCCCC-CEEEEEECCC------H-HHHHHHHHH--C-CCEEECCHH
T ss_conf             30876-4266540237------1-789999970--6-554405789


No 88 
>KOG2335 consensus
Probab=75.94  E-value=6  Score=20.86  Aligned_cols=191  Identities=18%  Similarity=0.263  Sum_probs=112.3

Q ss_pred             HHHHHHHCCC---CCHHHCCCCEEEECCCCCEEECCCCCCCC----CC---CHHHHHHHHHHHHHCCCCEEEEEECCCC-
Q ss_conf             8999863477---88877331166675898811048887863----28---8999999999999888936763302563-
Q gi|255764463|r   25 WIREMVREHR---LSVSDLILPIFLTSGEKTVESINSMPDVM----RM---SIDVAVEKIKQVADLGIPAIAIFPNIPM-   93 (337)
Q Consensus        25 ~iR~Lv~Et~---Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~----R~---Sid~L~~eie~~~~lGI~av~LFp~I~~-   93 (337)
                      .-|.|++...   +-.-.+.--.||+....-+..-..-|+..    ++   ..+.+++.++-....+ ..|-|=-+-|+ 
T Consensus        33 ~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~  111 (358)
T KOG2335          33 AFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQK  111 (358)
T ss_pred             HHHHHHHHHCCCEEECHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCCCCCCCCHH
T ss_conf             9999999968765722478888874174210001136877786699974799899999999865334-720415899878


Q ss_pred             -CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             -3455445421576537999999999730144798613327100114310013654462899999999999999628973
Q gi|255764463|r   94 -DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI  172 (337)
Q Consensus        94 -~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi  172 (337)
                       .+|--.|+.-.++-.||+..|+.++.+.+.- |-+           -|-|.    .|++.|++.+.    ..-.|||++
T Consensus       112 ~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~p-Vs~-----------KIRI~----~d~~kTvd~ak----~~e~aG~~~  171 (358)
T KOG2335         112 VAKRGGYGAFLMDNPELVGEMVSAVRANLNVP-VSV-----------KIRIF----VDLEKTVDYAK----MLEDAGVSL  171 (358)
T ss_pred             HHHCCCCCCEECCCHHHHHHHHHHHHHHCCCC-EEE-----------EEEEC----CCHHHHHHHHH----HHHHCCCCE
T ss_conf             88437726000238899999999998525998-699-----------99855----76787899999----998679868


Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH
Q ss_conf             52466767799999999987788577300336664354301016753102446777744315721147-88988887664
Q gi|255764463|r  173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ-EAIREASIDIQ  251 (337)
Q Consensus       173 vAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~-eA~~e~~~D~~  251 (337)
                      +.-    -||...-|..       .++...|.+-++      -|+...+-|-+           +|+. ..+.++.+...
T Consensus       172 ltV----HGRtr~~kg~-------~~~pad~~~i~~------v~~~~~~ipvi-----------aNGnI~~~~d~~~~~~  223 (358)
T KOG2335         172 LTV----HGRTREQKGL-------KTGPADWEAIKA------VRENVPDIPVI-----------ANGNILSLEDVERCLK  223 (358)
T ss_pred             EEE----ECCCHHHCCC-------CCCCCCHHHHHH------HHHHCCCCCEE-----------EECCCCCHHHHHHHHH
T ss_conf             999----3655776288-------888767799999------99747677089-----------5088576899999999


Q ss_pred             -CCCCEEEEC------CCHH
Q ss_conf             -089879955------3114
Q gi|255764463|r  252 -ESADMLLVK------PGLP  264 (337)
Q Consensus       252 -EGAD~lMVK------Pa~~  264 (337)
                       .|||=||+-      |+++
T Consensus       224 ~tG~dGVM~arglL~NPa~F  243 (358)
T KOG2335         224 YTGADGVMSARGLLYNPALF  243 (358)
T ss_pred             HHCCCEEEECCHHHCCCHHH
T ss_conf             75874688600000384120


No 89 
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=75.44  E-value=1.9  Score=24.31  Aligned_cols=111  Identities=23%  Similarity=0.330  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCC
Q ss_conf             899999999999988893676330256334554454215765379999999997301-4479861332710011431001
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      +++..+..++-+++-||+.+=+      -..++.+.          .|||.|++++| |+.|=+                
T Consensus        18 ~~~~A~~lA~aL~egG~~~~Ev------TlRT~~A~----------~aI~~l~~~~P~~~~iGA----------------   65 (205)
T TIGR01182        18 DVEDALPLAKALIEGGLRVLEV------TLRTPVAL----------EAIRALRKEVPKDALIGA----------------   65 (205)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEE------EECCCCHH----------HHHHHHHHHCCCCCEECC----------------
T ss_conf             7877789999998679808988------51472168----------999999972823348716----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH-----------------HHHHHHHHHCCCCCCCE----ECH
Q ss_conf             365446289999999999999962897352466767799-----------------99999998778857730----033
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRV-----------------QEIRKKLDSHGHINVGI----MPY  203 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV-----------------~aIR~~Ld~~g~~~~~I----msY  203 (337)
                        |-|.|.+       |...-.+||||++=-=..-+--+                 ..|=++| +.||+-+..    .+=
T Consensus        66 --GTVL~~~-------Q~~~A~~AGA~F~vSPG~~p~l~~~~~~~~~P~iPGV~tpsEi~~Al-~~G~~~lKlFPAe~~G  135 (205)
T TIGR01182        66 --GTVLNPE-------QLRQAVAAGAQFIVSPGLTPELAKHAKDKGIPIIPGVATPSEIMLAL-ELGITALKLFPAEVVG  135 (205)
T ss_pred             --CCCCCHH-------HHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHH-HCCCCEEEECCCCCCC
T ss_conf             --7648989-------99999970895787697888999998508881217776878999998-7577465212562353


Q ss_pred             HHHHHHHHHCCHHHH
Q ss_conf             666435430101675
Q gi|255764463|r  204 VAKFNSSFYGPYRDA  218 (337)
Q Consensus       204 saKfaS~fYgPFRdA  218 (337)
                      ..||=.+|+|||-+.
T Consensus       136 G~~~lkAL~GPf~~v  150 (205)
T TIGR01182       136 GVKMLKALAGPFPQV  150 (205)
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             089999731657898


No 90 
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.21  E-value=7.7  Score=20.14  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=57.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCC
Q ss_conf             2889999999999998889367633025633455445421576537999999999730-144798613327100114310
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcG  142 (337)
                      ....+.+.+.++.+++.|+.++..++.+-+.     -+-...+.   .+.++...+.. +.+-|++-+            
T Consensus        25 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~-----~~Ls~~Er---~~v~~~~~e~~~gr~pvi~G~------------   84 (309)
T cd00952          25 TVDLDETARLVERLIAAGVDGILTMGTFGEC-----ATLTWEEK---QAFVATVVETVAGRVPVFVGA------------   84 (309)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCHH-----HHCCHHHH---HHHHHHHHHHHCCCCEEEECC------------
T ss_conf             7379999999999997699989979235004-----34879999---999999999838985099605------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCC---CCCCHHHHHHHHHHHCCCCCCCEECHHH
Q ss_conf             0136544628999999999999996289735---2466---7677999999999877885773003366
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADII---APSE---MMDGRVQEIRKKLDSHGHINVGIMPYVA  205 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYsa  205 (337)
                          +.    .+...-.+.+...+++|||-+   .|.=   -.+|-+..-|..-|+.  .+++||-|-.
T Consensus        85 ----~~----~~t~~ai~~a~~a~~~Gad~~lv~~P~y~~~~~~~l~~~~~~ia~a~--~~lPiilYn~  143 (309)
T cd00952          85 ----TT----LNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV--PEMAIAIYAN  143 (309)
T ss_pred             ----CC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEC
T ss_conf             ----75----05999999999998469899998888588999999999999999867--8998899968


No 91 
>PRK07491 consensus
Probab=74.69  E-value=0.25  Score=30.23  Aligned_cols=142  Identities=20%  Similarity=0.279  Sum_probs=63.2

Q ss_pred             CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             86328899999----9999999888936763302563345544542157653-----79999999997301447986133
Q gi|255764463|r   61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN-----LINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg-----lv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      |+.|-..|..-    +....+++.|.-.--++|+.-+.+|   |+...+.|.     .....+.++|-.|..-+.+|--.
T Consensus       169 gisRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvpv~~~~~~---g~~~~~~De~~R~~tt~e~La~L~p~f~~~GtvTagn  245 (392)
T PRK07491        169 QITREEQDEFAVASQNKAEAAQKAGRFKDEIVPFTIKTRK---GDVVVDADEYIRHGATIEAMAKLKPAFDKDGTVTAAN  245 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCC---CCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEECCC
T ss_conf             9899999999999999999999849951207788732566---7520265545578867666864688645678641566


Q ss_pred             CCHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHH
Q ss_conf             2710011431001-365446289999999999999962897352466767799999999987788--5773003366643
Q gi|255764463|r  132 LDPFTIHGHDGIL-CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFN  208 (337)
Q Consensus       132 Lc~YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfa  208 (337)
                      -|+.| +|-+.++ ...+--....++-|+++ +.++.+|+|   |+.|.-|-|.|+|++|+.+|.  .|+-+.---==||
T Consensus       246 ss~~~-DGAaa~ll~s~~~a~~~gl~pla~i-~~~~~~g~d---P~~m~~gpv~A~~k~L~~agl~~~Did~~EinEAFA  320 (392)
T PRK07491        246 ASGIN-DGAAAVVLMSADEAAKRGITPLARI-VSWATAGVD---PSIMGTGPIPASRKALEKAGWSVGDLDLVEANEAFA  320 (392)
T ss_pred             CCCCC-CHHHHHHHHCHHHHHHCCCCCEEEE-EEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHH
T ss_conf             88542-5889898747999997799952999-941388748---778083889999999997699855688777505678


Q ss_pred             HH
Q ss_conf             54
Q gi|255764463|r  209 SS  210 (337)
Q Consensus       209 S~  210 (337)
                      +.
T Consensus       321 ~q  322 (392)
T PRK07491        321 AQ  322 (392)
T ss_pred             HH
T ss_conf             88


No 92 
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=74.39  E-value=5.9  Score=20.90  Aligned_cols=186  Identities=19%  Similarity=0.196  Sum_probs=85.9

Q ss_pred             CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             16667589881104888786328899999999999988893676330256334554454215765379999999997301
Q gi|255764463|r   43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP  122 (337)
Q Consensus        43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp  122 (337)
                      |+|||-.= --.--..-|.+...|++.|.++++.+..+|++.+.+-|+  ...+..       ++.-+.+.++.|++.+.
T Consensus        60 ~~~~Ha~Y-lINLas~~~e~~~kS~~~l~~el~~~~~lG~~~vV~HpG--s~~~~~-------~e~~i~~i~~~l~~vl~  129 (273)
T smart00518       60 DVSVHAPY-LINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPG--SYLKQS-------KEEALNRIIESLNEVID  129 (273)
T ss_pred             CEEEECCC-EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC--CCCCCC-------HHHHHHHHHHHHHHHHH
T ss_conf             66864421-004579988999999999999999999809985873453--135888-------89999999999999982


Q ss_pred             CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHH---------HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH-
Q ss_conf             447986133271001143100136544628999999---------9999999962897352466767799999999987-
Q gi|255764463|r  123 NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELI---------SHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS-  192 (337)
Q Consensus       123 dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L---------~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~-  192 (337)
                      +.   .++-++==|+-|.-.-+...-=+-.+.++.+         -.-+=.+| ||-|+-.|.+    -...++ .+|+ 
T Consensus       130 ~~---~~~~lllEntAGqG~~lG~~~eeL~~ii~~~~~~~rvgvClDTcH~fA-aGydi~t~~~----~~~~l~-~~~~~  200 (273)
T smart00518      130 ET---KGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDTCHIFA-AGYDINTVEG----FEKVLE-EFENV  200 (273)
T ss_pred             CC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHC-CCCCCCCHHH----HHHHHH-HHHHH
T ss_conf             36---986799745789988468689999999997378465378752020222-6578686888----999999-99987


Q ss_pred             CCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC--CCCCCCCCCCCCH-HHHHHHHHHHHHH-CCCCEEEECCCH
Q ss_conf             788577300336664354301016753102446--7777443157211-4788988887664-089879955311
Q gi|255764463|r  193 HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL--KGDKKTYYLDPAN-VQEAIREASIDIQ-ESADMLLVKPGL  263 (337)
Q Consensus       193 ~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~--~gdr~sYQmd~~n-~~eA~~e~~~D~~-EGAD~lMVKPa~  263 (337)
                      -|+..+..+--               =+|.-.+  ..||. -.+.-.. ..++++....|.. .+--+++=-|..
T Consensus       201 iGl~~l~~iHl---------------NDSk~~~GS~~DRH-~~IG~G~IG~~~~~~l~~~~~~~~ip~ILETP~~  259 (273)
T smart00518      201 LGLEYLKAIHL---------------NDSKIELGSGKDRH-ENLGEGYIGFEPFRLLMADKRFDGIPLILETPPG  259 (273)
T ss_pred             HCHHHEEEEEE---------------CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHCCHHHCCCCEEEECCCC
T ss_conf             38556458876---------------68876446788755-5678986688999999819746499889968999


No 93 
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.37  E-value=8.1  Score=20.00  Aligned_cols=166  Identities=11%  Similarity=0.096  Sum_probs=87.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf             328899999999999988893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc  141 (337)
                      .+...+.+.+.++.+.+.|+..+.+++...+-.       +++.+ =-.+.++...+..+ ..-||+-|.-         
T Consensus        16 g~iD~~~l~~~v~~l~~~Gv~gi~v~GstGE~~-------~Ls~~-Er~~l~~~~~~~~~~~~~vi~gv~~---------   78 (284)
T cd00950          16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESP-------TLSDE-EHEAVIEAVVEAVNGRVPVIAGTGS---------   78 (284)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-------HCCHH-HHHHHHHHHHHHCCCCCEEEEECCC---------
T ss_conf             696999999999999976999899684351242-------48999-9999999999971897507750787---------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf             00136544628999999999999996289735---24667---6779999999998778857730033666435430101
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY  215 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF  215 (337)
                                 .+.+.-.++|...+++|||.|   .|.-.   .|+-+...+...++   .+.+||-|-.          
T Consensus        79 -----------~~t~~~i~~a~~A~~~Gadai~v~pP~y~~~s~~~l~~~~~~ia~a---~~lPi~lYn~----------  134 (284)
T cd00950          79 -----------NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA---TDLPVILYNV----------  134 (284)
T ss_pred             -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC----------
T ss_conf             -----------7899999999999983999899626657897999999999999755---5997798737----------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             6753102446777744315721147889888876640898799553114589999999624998999934618
Q gi|255764463|r  216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGE  288 (337)
Q Consensus       216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGE  288 (337)
                             |...    .+.+++    +-+.+..    +=-.++-||-+-+-++-+.++.+..+-.+..|.-+++
T Consensus       135 -------P~~t----g~~l~~----~~l~~L~----~~pnv~giK~ss~d~~~~~~~~~~~~~~~~v~~G~d~  188 (284)
T cd00950         135 -------PGRT----GVNIEP----ETVLRLA----EHPNIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA  188 (284)
T ss_pred             -------CCCC----CCCCCH----HHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHH
T ss_conf             -------6411----678888----9999984----7999899985889899999999866987546448689


No 94 
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=74.27  E-value=8.1  Score=19.98  Aligned_cols=136  Identities=13%  Similarity=0.141  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECC--------CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf             999999999999996289735246--------676779999999998778857730033666435430101675310244
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPS--------EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL  224 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPS--------dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~  224 (337)
                      -|-+.+++++-..+..|.|+|-=-        .=+.-||.++.++++                             -+-.
T Consensus       172 Lsp~~~a~~~ye~~~GGvDfiKDDE~l~~~pf~p~~eRv~~v~~a~~-----------------------------~a~~  222 (467)
T PRK04208        172 LSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVMEAID-----------------------------KAEA  222 (467)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH-----------------------------HHHH
T ss_conf             99799999999997048756406644669888978999999999999-----------------------------9999


Q ss_pred             CCCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHCC
Q ss_conf             677774431572114--7889888876640898799553114589999999---62499899993461899999999888
Q gi|255764463|r  225 LKGDKKTYYLDPANV--QEAIREASIDIQESADMLLVKPGLPYLDVCFRIK---EKFGLPTFAYQVSGEYAMIKAASLQG  299 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~--~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k---~~~~~P~~aYqVSGEYami~~a~~~g  299 (337)
                      -.|.|+.|-.|....  +|-++-++.=.+.|+.++||-.-..=++.++.++   +..++|+.+ |-.|-=++-. ....|
T Consensus       223 eTGe~k~y~~NiTa~~~~em~~Rae~~~e~G~~~vMvd~~~~G~~al~~lr~~~r~~~l~IHa-HRA~~ga~tr-~p~~G  300 (467)
T PRK04208        223 ETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIIMIDVVTAGWTALQSLREWCRDNGLALHA-HRAMHAAFTR-NPNHG  300 (467)
T ss_pred             HHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEE-ECCCCHHHCC-CCCCC
T ss_conf             768951899862279899999999999975996798974303307999999977653965885-0153212116-87666


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             9788999999999997726999982
Q gi|255764463|r  300 WINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       300 ~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      + +.. +   .-.-.+=||+|.|.+
T Consensus       301 i-s~~-v---l~Kl~RLaG~D~ih~  320 (467)
T PRK04208        301 I-SFR-V---LAKLLRLIGVDHLHT  320 (467)
T ss_pred             C-CHH-H---HHHHHHHCCCCEEEC
T ss_conf             4-399-9---999998718783242


No 95 
>KOG3111 consensus
Probab=73.83  E-value=4  Score=22.09  Aligned_cols=148  Identities=25%  Similarity=0.304  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCH-----------HHHHHHHHHHCCCCCCCEECHH--------HHHHHHHHC
Q ss_conf             999999999999996289735246676779-----------9999999987788577300336--------664354301
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPSEMMDGR-----------VQEIRKKLDSHGHINVGIMPYV--------AKFNSSFYG  213 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-----------V~aIR~~Ld~~g~~~~~ImsYs--------aKfaS~fYg  213 (337)
                      .-+..|+++....-.+|||++- =|-|||+           |.++|+.++...|.|+-.|--.        +|---+.|-
T Consensus        14 ~dfanL~~E~~~~~~~GadwlH-lDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~Peq~v~~~a~agas~~t   92 (224)
T KOG3111          14 SDFANLAAECKKMLDAGADWLH-LDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFT   92 (224)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEE
T ss_conf             3067899999999974987587-860147104774336188999985258885236787646988876799864775699


Q ss_pred             CHHHHHHCC------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE---ECCCH-------HHHHHHHHHHHHCC
Q ss_conf             016753102------446777744315721147889888876640898799---55311-------45899999996249
Q gi|255764463|r  214 PYRDAISTR------DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL---VKPGL-------PYLDVCFRIKEKFG  277 (337)
Q Consensus       214 PFRdA~~S~------p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM---VKPa~-------~yLDii~~~k~~~~  277 (337)
                      =.-+++.+-      -.-+|=|-.--+.|...-|.+...    .+-.||+.   |+||.       -.+.-++.+|+++.
T Consensus        93 fH~E~~q~~~~lv~~ir~~gmk~G~alkPgT~Ve~~~~~----~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp  168 (224)
T KOG3111          93 FHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPL----AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP  168 (224)
T ss_pred             EEEEECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH----HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             986432578999999997497566874899958999976----4102579999854897504578999899999998689


Q ss_pred             CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             98999934618999999998889788999999999997726999982
Q gi|255764463|r  278 LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       278 ~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      -+  --||-|-                 +-.++....--|||++|+.
T Consensus       169 ~l--~ieVDGG-----------------v~p~ti~~~a~AGAN~iVa  196 (224)
T KOG3111         169 NL--DIEVDGG-----------------VGPSTIDKAAEAGANMIVA  196 (224)
T ss_pred             CC--EEEECCC-----------------CCCCHHHHHHHCCCCEEEE
T ss_conf             84--3885488-----------------6821377998758887986


No 96 
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=73.49  E-value=8.5  Score=19.86  Aligned_cols=176  Identities=18%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      +.+.++.+++.+.+ |.-.|=+=  ++ -.++.       ..+.+...++.|++..+--+|+| +     -+..+-|-. 
T Consensus         8 ~~~~~~~~~~~~~~-~aD~vE~R--~D-~l~~~-------~~~~i~~~l~~l~~~~~~PiI~T-~-----R~~~eGG~~-   69 (222)
T pfam01487         8 SLEEALAELEELKE-GADAVELR--VD-LLENV-------DAEDVSEQLSALRESTGLPIIFT-V-----RTKSEGGRF-   69 (222)
T ss_pred             CHHHHHHHHHHHHH-CCCEEEEE--EC-CCCCC-------CHHHHHHHHHHHHHHCCCCEEEE-E-----CCHHHCCCC-
T ss_conf             99999999998610-89989998--60-35687-------87899999999998389977999-6-----877888998-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf             65446289999999999999962897352466767799999999987788577300336664354301016753102446
Q gi|255764463|r  146 DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL  225 (337)
Q Consensus       146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~  225 (337)
                        .++.++=++.|..    .++.|+|+|-=--....+.  ++..+......-..|+||- -|.            .+|..
T Consensus        70 --~~~~~~~~~ll~~----~~~~~~d~iDiE~~~~~~~--~~~~~~~~~~~~kvI~S~H-~f~------------~tp~~  128 (222)
T pfam01487        70 --EGSEEEYLELLKE----ALRLGPDYIDIELSSAPEE--LLSVIAAKKGGTKIILSYH-DFE------------GTPSW  128 (222)
T ss_pred             --CCCHHHHHHHHHH----HHHHCCCEEEEECCCCCHH--HHHHHHHHCCCCEEEEEEC-CCC------------CCCCH
T ss_conf             --8999999999999----9975898899977778136--8999997428978999845-898------------99699


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEE-ECCCHHHHHHHH------HHHHHCCCCEEEEECC--HHHHHHHHH
Q ss_conf             777744315721147889888876-640898799-553114589999------9996249989999346--189999999
Q gi|255764463|r  226 KGDKKTYYLDPANVQEAIREASID-IQESADMLL-VKPGLPYLDVCF------RIKEKFGLPTFAYQVS--GEYAMIKAA  295 (337)
Q Consensus       226 ~gdr~sYQmd~~n~~eA~~e~~~D-~~EGAD~lM-VKPa~~yLDii~------~~k~~~~~P~~aYqVS--GEYami~~a  295 (337)
                                     +.+.+.... .+-|||++= +-++-..-|+.+      .+++ .+.|+.+|.-.  |-++-+-+.
T Consensus       129 ---------------~~l~~~~~~~~~~gaDivKia~~a~s~~D~~~l~~~~~~~~~-~~~p~i~~~MG~~G~~SRi~~~  192 (222)
T pfam01487       129 ---------------EELLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKS-LDKPLIAISMGELGRISRILGP  192 (222)
T ss_pred             ---------------HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHH
T ss_conf             ---------------999999999996399989999625988899999999998663-5998899966875278999887


Q ss_pred             H
Q ss_conf             9
Q gi|255764463|r  296 S  296 (337)
Q Consensus       296 ~  296 (337)
                      .
T Consensus       193 ~  193 (222)
T pfam01487       193 V  193 (222)
T ss_pred             H
T ss_conf             7


No 97 
>pfam00923 Transaldolase Transaldolase.
Probab=73.08  E-value=5.1  Score=21.35  Aligned_cols=67  Identities=31%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             CCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             576537999999999730-1447986133271001143100--13654462899999999999999628973524
Q gi|255764463|r  104 IDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       104 ~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      .|.++.+.+|.+..+.-- |+++|=.     |-|..|-.-+  +....|---.|+---..|++.-|+|||++|+|
T Consensus        85 ~d~~~mi~eA~~l~~~~~~~nv~IKI-----P~t~~G~~a~~~L~~~Gi~vn~T~vfs~~Qa~~aa~Aga~~iSp  154 (244)
T pfam00923        85 DDTEGTIAEARRLIALYGRPNVLIKI-----PATWEGLKAIKELSAEGINVNVTLIFSLAQALAAAEAGASVISP  154 (244)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEE-----CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf             79999999999999852788779992-----79777999999999779965688846799999999719969999


No 98 
>KOG0564 consensus
Probab=73.04  E-value=8.7  Score=19.79  Aligned_cols=204  Identities=18%  Similarity=0.240  Sum_probs=110.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf             328899999999999988893676330256334554-4542157653799999999973014479861332710011431
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc  141 (337)
                      -+.+...+-+.++.+.++||++|+-.-+=|+.--|. ...|  +.-..----||-||.+++|-.-   +|.-.|- -|||
T Consensus        87 tn~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e--~gF~yA~DLVr~Irs~YGDyF~---IgVAgYP-Eghp  160 (590)
T KOG0564          87 TNMPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEE--GGFRYAVDLVRYIRSKYGDYFC---IGVAGYP-EGHP  160 (590)
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCEEE---EEECCCC-CCCC
T ss_conf             57618999999999998072242442589999865320035--7712579999999998288478---8750378-7776


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH-----HHHHHHHHHHCCCCCC----CEECHHHHHHHHHH
Q ss_conf             00136544628999999999999996289735246676779-----9999999987788577----30033666435430
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR-----VQEIRKKLDSHGHINV----GIMPYVAKFNSSFY  212 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-----V~aIR~~Ld~~g~~~~----~ImsYsaKfaS~fY  212 (337)
                      -.....   -.+.++.|.+    --+||||.|---=.-|--     |...|+    .|- ++    +||+-.      =|
T Consensus       161 e~~~~~---~~~Dl~yLk~----KvdaGaDFIiTQlFYd~e~flkfv~~cR~----~gi-~~PIvPGIMPI~------~Y  222 (590)
T KOG0564         161 EAPSHD---YLADLPYLKE----KVDAGADFIITQLFYDVETFLKFVKDCRA----AGI-NVPIVPGIMPIQ------SY  222 (590)
T ss_pred             CCCCCC---HHHHHHHHHH----HHCCCCHHHHHHHHCCHHHHHHHHHHHHH----HCC-CCCCCCCCCCCH------HH
T ss_conf             776544---1221689998----52154214355464079999999999998----378-888555543102------08


Q ss_pred             CCHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCHHHH
Q ss_conf             1016753102446777744315-721147889888876640898799553114589999999624998-99993461899
Q gi|255764463|r  213 GPYRDAISTRDLLKGDKKTYYL-DPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLP-TFAYQVSGEYA  290 (337)
Q Consensus       213 gPFRdA~~S~p~~~gdr~sYQm-d~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P-~~aYqVSGEYa  290 (337)
                      +-|+-.++=+..-.-.-=.=++ +...-+||+|+.-.+.              -.++++++-++..+| +--|-.-=|-|
T Consensus       223 ~sf~R~~kls~~~IP~~~~~~L~piKddDeaVr~~Gvel--------------~vemc~kll~~g~v~~lHfyTlNlEks  288 (590)
T KOG0564         223 RSFLRIAKLSGVSIPQHLMDRLEPIKDDDEAVRNYGVEL--------------IVEMCRKLLDSGVVPGLHFYTLNLEKS  288 (590)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHH--------------HHHHHHHHHHCCCCCEEEEEEECHHHH
T ss_conf             999999987278787999973366788189999972999--------------999999998659604048997137778


Q ss_pred             HHHHHHHCCCCCHH
Q ss_conf             99999988897889
Q gi|255764463|r  291 MIKAASLQGWINKN  304 (337)
Q Consensus       291 mi~~a~~~g~~d~~  304 (337)
                      -..-....|.+++.
T Consensus       289 v~~IL~~lgll~~~  302 (590)
T KOG0564         289 VAAILKRLGLLDEL  302 (590)
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             99999864752000


No 99 
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.92  E-value=8.7  Score=19.77  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH
Q ss_conf             4888786328899999999999988893676330256334554454215765379999999997301-447986133271
Q gi|255764463|r   56 INSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP  134 (337)
Q Consensus        56 I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~  134 (337)
                      |.-+-...+...+.+.+.++.+.+.|+..+.+++..-+..     +-+..+   -.+.++...+..+ .+-|++      
T Consensus         9 iTPF~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~-----~Ls~eE---r~~v~~~~~~~~~g~~~vi~------   74 (289)
T cd00951           9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFF-----SLTPDE---YAQVVRAAVEETAGRVPVLA------   74 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCC-----CCCHHH---HHHHHHHHHHHCCCCCEEEE------
T ss_conf             3876899597999999999999977999999793300621-----289999---99999999998189851740------


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--CC----CCCCCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf             0011431001365446289999999999999962897352--46----6767799999999987788577300336
Q gi|255764463|r  135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA--PS----EMMDGRVQEIRKKLDSHGHINVGIMPYV  204 (337)
Q Consensus       135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA--PS----dMMDGrV~aIR~~Ld~~g~~~~~ImsYs  204 (337)
                           |+|  .    .-+++    .+.|-...++|||.|.  |.    --.||-+...+...|..   +.+||-|-
T Consensus        75 -----g~g--~----~t~~~----i~la~~a~~~Gadav~v~pPy~~~~~~~~l~~~~~~ia~a~---~lpi~lYn  132 (289)
T cd00951          75 -----GAG--Y----GTATA----IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST---DLGVIVYN  132 (289)
T ss_pred             -----CCC--C----HHHHH----HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC---CCCEEECC
T ss_conf             -----676--3----19999----99999999759999997698888999999999999999846---99866148


No 100
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=72.89  E-value=6.7  Score=20.53  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC--C-CCC-----------CCC---CCHHHHHHHHHHHHHHHHHC
Q ss_conf             53799999999973014-479861332710011431--0-013-----------654---46289999999999999962
Q gi|255764463|r  107 DNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD--G-ILC-----------DGE---IVNDETIELISHAAVIQADA  168 (337)
Q Consensus       107 dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc--G-i~~-----------~g~---IdND~Tl~~L~k~Al~~A~A  168 (337)
                      -.+|..||+.+|++.|+ .-+| --|=.|+|--...  | --+           +-+   -.-+...+.+.+-+..|.+|
T Consensus       121 l~~v~eai~~~r~~l~~~~pLI-GF~GaPwTLasYmieG~~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~i~yl~~Qi~a  199 (347)
T PRK00115        121 LPYVLEAVRLLRRELPGEVPLI-GFAGSPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEA  199 (347)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3799999999999728888657-644765999999984889846799999875199999999999999999999999981


Q ss_pred             CCCEEECCCCCCC
Q ss_conf             8973524667677
Q gi|255764463|r  169 GADIIAPSEMMDG  181 (337)
Q Consensus       169 GaDivAPSdMMDG  181 (337)
                      |||+|---|--=|
T Consensus       200 GAd~iqIFDSwag  212 (347)
T PRK00115        200 GAQAVQIFDSWAG  212 (347)
T ss_pred             CCCEEEEECCCCC
T ss_conf             9987885055334


No 101
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=72.44  E-value=8.9  Score=19.70  Aligned_cols=169  Identities=24%  Similarity=0.304  Sum_probs=85.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             88786328899999999999988893676330256334554454215765379999999997301447986133271001
Q gi|255764463|r   58 SMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        58 SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      ..||---++.+-+..-+.-+..-|=.++=.=                   ++  .-|++||+.. ++-||          
T Consensus        13 A~~~ePl~~~~im~~mA~Aa~~gGA~giR~~-------------------~~--~dI~aik~~v-~lPII----------   60 (222)
T PRK01130         13 ALPGEPLHSPEIMAAMALAAEQGGAVGIRAN-------------------GV--EDIKAIREVV-DVPII----------   60 (222)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEECC-------------------CH--HHHHHHHHHC-CCCEE----------
T ss_conf             7998997887999999999996896299718-------------------98--8999999847-99879----------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH---------HHHHHHHHHHCCCCCCCEECHHHHHH
Q ss_conf             143100136544628999999999999996289735246676779---------99999999877885773003366643
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR---------VQEIRKKLDSHGHINVGIMPYVAKFN  208 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr---------V~aIR~~Ld~~g~~~~~ImsYsaKfa  208 (337)
                          ||++.+.-+-+.=+.-.-+-+...++|||||||--...--|         |..||+.     | +..+|+      
T Consensus        61 ----Gi~K~~~~~s~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~g~~~~~~i~~i~~~-----~-~~l~MA------  124 (222)
T PRK01130         61 ----GIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEK-----P-GQLLMA------  124 (222)
T ss_pred             ----EEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-----H-CCEEEE------
T ss_conf             ----999546899973751769999999986999999846789898996899999999998-----2-987898------


Q ss_pred             HHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE------------CCCHHHHHHHHHHHHHC
Q ss_conf             543010167531024467777443157211478898888766408987995------------53114589999999624
Q gi|255764463|r  209 SSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV------------KPGLPYLDVCFRIKEKF  276 (337)
Q Consensus       209 S~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV------------KPa~~yLDii~~~k~~~  276 (337)
                                                |.++..||+...    +-|+|++=-            ++-.|-+++++++.+. 
T Consensus       125 --------------------------D~st~eea~~A~----~~G~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~-  173 (222)
T PRK01130        125 --------------------------DCSTLEEGLAAA----KLGFDFIGTTLSGYTEYTEGETPEEPDFALLKELLKA-  173 (222)
T ss_pred             --------------------------ECCCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC-
T ss_conf             --------------------------548899999999----8499999723345676767787899869999999958-


Q ss_pred             CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             998999934618999999998889788999999999997726999982
Q gi|255764463|r  277 GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       277 ~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      .+|+.|               .|-++....+.+.|    .+||..++-
T Consensus       174 ~~pvIa---------------EGri~tPe~a~~al----~~GA~aVvV  202 (222)
T PRK01130        174 GCPVIA---------------EGRINTPEQAKKAL----ELGAHAVVV  202 (222)
T ss_pred             CCCEEE---------------ECCCCCHHHHHHHH----HCCCCEEEE
T ss_conf             998997---------------47989999999999----849989998


No 102
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=72.15  E-value=9.1  Score=19.65  Aligned_cols=178  Identities=19%  Similarity=0.228  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      -+.+.++++++.+...|.--|=+=  ++ -..      .+++-.-+...++.|++.++++-+|.-     +-++..-|-.
T Consensus        25 ~t~~e~~~~~~~~~~~~aDlvE~R--lD-~l~------~~~~~~~~~~~~~~i~~~~~~~PlI~T-----~R~~~EGG~~   90 (253)
T PRK02412         25 KTIEEVAQEAEAIKYADADIIEWR--AD-FLE------KVSDVEEVLAAAPAIREKFPGKPLLFT-----FRTAKEGGEI   90 (253)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEE--CC-CCC------CCCCHHHHHHHHHHHHHHCCCCCEEEE-----ECCHHHCCCC
T ss_conf             999999999999844699989996--03-134------569999999999999984689978999-----2474438986


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCC-CEEECCCCC-CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC
Q ss_conf             36544628999999999999996289-735246676-7799999999987788577300336664354301016753102
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGA-DIIAPSEMM-DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR  222 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGa-DivAPSdMM-DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~  222 (337)
                         .++.++-++.|.    ..+++|+ |+|==--.. .-.+..+++...+.|  -..|+||-                  
T Consensus        91 ---~~~e~~~~~il~----~~~~~~~~d~iDiEl~~~~~~~~~l~~~a~~~~--~~vI~S~H------------------  143 (253)
T PRK02412         91 ---ELSDEEYLALYK----AVIESGLPDYIDVELFSGKDVVKEMVAFAHEHG--VKVVLSYH------------------  143 (253)
T ss_pred             ---CCCHHHHHHHHH----HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCC--CEEEEEEC------------------
T ss_conf             ---699999999999----999759985797531377789999999888669--98999854------------------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEECCCH---HHHHHH------HHHHHH-CCCCEEEEEC--CHHH
Q ss_conf             446777744315721147889888876-64089879955311---458999------999962-4998999934--6189
Q gi|255764463|r  223 DLLKGDKKTYYLDPANVQEAIREASID-IQESADMLLVKPGL---PYLDVC------FRIKEK-FGLPTFAYQV--SGEY  289 (337)
Q Consensus       223 p~~~gdr~sYQmd~~n~~eA~~e~~~D-~~EGAD~lMVKPa~---~yLDii------~~~k~~-~~~P~~aYqV--SGEY  289 (337)
                       .|.   +|    |  ..+.+.+.... .+-|||++  |=+.   ..-|++      ..+++. .+.|+.+.-.  -|-+
T Consensus       144 -dF~---~T----P--~~~~l~~~~~~m~~~gADIv--Kia~~~~~~~Dvl~ll~~t~~~~~~~~~~Pli~~~MG~~G~~  211 (253)
T PRK02412        144 -DFH---KT----P--SAEEIVERLRKMEELGADIV--KIAVMPQSEQDVLTLLNATREMKELYADQPIITMSMGKLGRI  211 (253)
T ss_pred             -CCC---CC----C--CHHHHHHHHHHHHHCCCCEE--EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf             -898---89----7--99999999999997099989--999856988899999999999996079998899967986489


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|255764463|r  290 AMIKAA  295 (337)
Q Consensus       290 ami~~a  295 (337)
                      +-+...
T Consensus       212 sRi~~~  217 (253)
T PRK02412        212 SRLAGE  217 (253)
T ss_pred             HHHHHH
T ss_conf             999899


No 103
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=72.03  E-value=9.1  Score=19.63  Aligned_cols=31  Identities=13%  Similarity=0.232  Sum_probs=18.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf             89999999999998889367633025633455
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN   97 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd   97 (337)
                      .++.+.+.++++.++|.+.|+++ .+|+--..
T Consensus       129 ~v~~~~~~i~~L~~~Gar~~~v~-~~pplgc~  159 (270)
T cd01846         129 AVDNLFQALQRLYAAGARNFLVL-NLPDLGLT  159 (270)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCC
T ss_conf             99999999999998498589980-89977767


No 104
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=71.76  E-value=9.3  Score=19.60  Aligned_cols=107  Identities=24%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCHHHCCCCCC
Q ss_conf             99999999999988893676330256334554--454215765379999999997301--44798613327100114310
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN--TGSHIIDPDNLINEGICAIKKNIP--NIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~--~GseA~n~dglv~rAIr~IK~~fp--dl~vi~DVcLc~YT~hGHcG  142 (337)
                      ..++...|.++.+.|+-++-+=-.+-+ ||.-  .|.+-...+ -.+.-|+++++.-+  +.+|++-+      +    .
T Consensus        92 ~~nvartV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~-e~v~rIkAa~~a~~~~~fvi~ART------d----a  159 (289)
T COG2513          92 ALNVARTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSID-EMVDRIKAAVEARRDPDFVIIART------D----A  159 (289)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC-HHCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCEEEEEEH------H----H
T ss_conf             889999999999758626645322550-212788898767899-999999999971558885999614------8----7


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             0136544628999999999999996289735246676779999999998778
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG  194 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g  194 (337)
                      ...++   -|++++    -|..|.+||||+|-|-.+-|  ...||+-.+.-.
T Consensus       160 ~~~~~---ld~AI~----Ra~AY~eAGAD~if~~al~~--~e~i~~f~~av~  202 (289)
T COG2513         160 LLVEG---LDDAIE----RAQAYVEAGADAIFPEALTD--LEEIRAFAEAVP  202 (289)
T ss_pred             HHHCC---HHHHHH----HHHHHHHCCCCEECCCCCCC--HHHHHHHHHHCC
T ss_conf             77524---799999----99999975976871366799--999999998468


No 105
>KOG1579 consensus
Probab=71.68  E-value=6.9  Score=20.46  Aligned_cols=220  Identities=16%  Similarity=0.180  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC----CHHHHHH---HHHHHHHC-CCEEEECCCCCHHHCCC
Q ss_conf             9999999999988893676330256334554454215765----3799999---99997301-44798613327100114
Q gi|255764463|r   68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD----NLINEGI---CAIKKNIP-NIGIITDVALDPFTIHG  139 (337)
Q Consensus        68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d----glv~rAI---r~IK~~fp-dl~vi~DVcLc~YT~hG  139 (337)
                      +.+.+.-++-+++|-.-+.-|-.=    -+..+-+.+.+.    .+..+.+   +.-++.+. +.. ..=-|+-||-.|=
T Consensus        53 e~V~~~H~efL~aGadIi~T~Tyq----as~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~-~v~gsiGp~~A~l  127 (317)
T KOG1579          53 EAVEQVHKEFLRAGADIISTNTYQ----ASSDGFEEYVEEEELIELYEKSVELADLARERLGEETG-YVAGSIGPYGATL  127 (317)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEE----ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCEE
T ss_conf             999999999997068589976553----03257765212677899999889999999987623434-3565126630453


Q ss_pred             CCCCCCC----CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf             3100136----54462899999999999999628973524667677-999999999877885773003366643543010
Q gi|255764463|r  140 HDGILCD----GEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP  214 (337)
Q Consensus       140 HcGi~~~----g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP  214 (337)
                      |+|.--.    ..+++++-.+....|.-.+.++|.|.++=---=+- --.++=+.|.+. +.+.+       |+=+|   
T Consensus       128 ~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~-~~~~p-------~~is~---  196 (317)
T KOG1579         128 ADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQEL-GPSKP-------FWISF---  196 (317)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC-CCCCC-------EEEEE---
T ss_conf             37733115655665899999999999999986798789986148788899999999962-88886-------79999---


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----CCCHHHHHHHHHHHHH-CCCCEEEEECCHHH
Q ss_conf             167531024467777443157211478898888766408987995----5311458999999962-49989999346189
Q gi|255764463|r  215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV----KPGLPYLDVCFRIKEK-FGLPTFAYQVSGEY  289 (337)
Q Consensus       215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV----KPa~~yLDii~~~k~~-~~~P~~aYqVSGEY  289 (337)
                               .. +| ..--.+-    +-+-|+......|+..+-|    -+.-.-..++.++-.. ++.|+.+|--|||-
T Consensus       197 ---------t~-~d-~g~l~~G----~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvYPNsGe~  261 (317)
T KOG1579         197 ---------TI-KD-EGRLRSG----ETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVYPNSGEV  261 (317)
T ss_pred             ---------EE-CC-CCCCCCC----CCHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             ---------96-68-7712678----739999998606874389983357811200899998630279808994698887


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHH----HHCCCEE
Q ss_conf             99999998889788999999999997----7269999
Q gi|255764463|r  290 AMIKAASLQGWINKNDAMMESLLAFK----RAGCDGI  322 (337)
Q Consensus       290 ami~~a~~~g~~d~~~~~~E~l~~~k----RAGAd~I  322 (337)
                         .-..+.+|.+.. -.+|.+..+.    -.|+.+|
T Consensus       262 ---yd~~~g~~~~~~-~~~~~~~~~~~~~~~lGv~iI  294 (317)
T KOG1579         262 ---YDNEKGGWIPTP-FGLEPWQTYVKKAIDLGVRII  294 (317)
T ss_pred             ---CCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEE
T ss_conf             ---766568505898-554418999999996055132


No 106
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=71.63  E-value=9.3  Score=19.58  Aligned_cols=54  Identities=30%  Similarity=0.441  Sum_probs=44.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             08987995531145899999996249989999346189999999988897889999999999977269999820
Q gi|255764463|r  252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       252 EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      -..|.+=|=||.. -.+|+++++.++.|+.|               -|++..++-+.|+|    .|||+.|=|-
T Consensus       115 ~~PD~IEilPG~~-p~~i~~i~~~~~~PiIA---------------GGLI~~~edv~~aL----~aGA~aVSTS  168 (174)
T pfam04309       115 LEPDFIEVLPGVM-PKVIQEITERTNIPIIA---------------GGLIRTEEEVREAL----KAGAVAVSTS  168 (174)
T ss_pred             CCCCEEEECCHHH-HHHHHHHHHHCCCCEEE---------------ECCCCCHHHHHHHH----HCCCEEEECC
T ss_conf             7989999986669-99999999747999997---------------67838899999999----8499699878


No 107
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286   This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=71.44  E-value=2.4  Score=23.54  Aligned_cols=26  Identities=35%  Similarity=0.298  Sum_probs=18.4

Q ss_pred             HHHHHHHHCCCCEEECC--CCCCCHHHH
Q ss_conf             99999996289735246--676779999
Q gi|255764463|r  160 HAAVIQADAGADIIAPS--EMMDGRVQE  185 (337)
Q Consensus       160 k~Al~~A~AGaDivAPS--dMMDGrV~a  185 (337)
                      -+|+.+|+||||||+-+  .-|+-+...
T Consensus        20 G~a~gLA~AGadi~g~~~~~~~~ET~~~   47 (249)
T TIGR01832        20 GIAVGLAEAGADIVGVGHISEPSETQQQ   47 (249)
T ss_pred             HHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf             9999998577417851431263888999


No 108
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=71.28  E-value=3.6  Score=22.33  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=26.8

Q ss_pred             HHHHHHHHHCCCEEEE---CCCC-CHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             9999997301447986---1332-71001143100136544628999
Q gi|255764463|r  113 GICAIKKNIPNIGIIT---DVAL-DPFTIHGHDGILCDGEIVNDETI  155 (337)
Q Consensus       113 AIr~IK~~fpdl~vi~---DVcL-c~YT~hGHcGi~~~g~IdND~Tl  155 (337)
                      .++.+ +.+|+|.+..   |+|- ||+.+|+|||  .++.+++|++-
T Consensus        32 I~~rL-~~ge~i~lV~g~DDIC~~cp~~~~~~C~--~e~~~~r~r~~   75 (135)
T COG3543          32 IAERL-KAGEDIKLVDGPDDICVSCPCKIDNHCG--DESSVERDRIA   75 (135)
T ss_pred             HHHHH-HCCCCEEEEECCCCHHHCCCCCCCCCCC--CCHHHHHHHHH
T ss_conf             99986-1599769984665043237678887626--62167889999


No 109
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.94  E-value=9.6  Score=19.48  Aligned_cols=27  Identities=11%  Similarity=0.207  Sum_probs=20.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7863288999999999999888936763
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAI   87 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~L   87 (337)
                      ||+ .+|.+.-++-++.+.++|++.|=+
T Consensus        19 ~~~-~~s~e~K~~ia~~L~~~Gv~~IEv   45 (287)
T PRK05692         19 EKR-FIPTADKIALIDRLSAAGLSYIEV   45 (287)
T ss_pred             CCC-CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             899-849999999999999849999996


No 110
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=70.91  E-value=5.5  Score=21.11  Aligned_cols=130  Identities=22%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
Q ss_conf             32889999999999998889367633025633455445421576537999999999730144798613327100114310
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG  142 (337)
                      .-.+.+.....++-+.+.||+.+=+=-      .++.          -.++|+.++++||++.|=+-.            
T Consensus        11 r~~~~~~a~~~~~al~~~Gi~~iEitl------~t~~----------a~~~i~~l~~~~~~~~iGaGT------------   62 (190)
T cd00452          11 RGDDAEDALALAEALIEGGIRAIEITL------RTPG----------ALEAIRALRKEFPEALIGAGT------------   62 (190)
T ss_pred             ECCCHHHHHHHHHHHHHCCCCEEEEEC------CCCH----------HHHHHHHHHHHCCCCEEEECC------------
T ss_conf             779999999999999986998899967------8802----------999999999868980896523------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC
Q ss_conf             01365446289999999999999962897352466767799999999987788577300336664354301016753102
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR  222 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~  222 (337)
                            |.|-+       |+-...+|||+++--..+...-+..-++    ++   ++.+                     
T Consensus        63 ------V~~~~-------~~~~a~~aGa~FivsP~~~~~v~~~a~~----~~---~~~i---------------------  101 (190)
T cd00452          63 ------VLTPE-------QADAAIAAGAQFIVSPGLDPEVVKAANR----AG---IPLL---------------------  101 (190)
T ss_pred             ------CCCHH-------HHHHHHHCCCCEEECCCCCHHHHHHHHH----CC---CCEE---------------------
T ss_conf             ------47799-------9999998599899737799999999998----29---9665---------------------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHHHHHHC
Q ss_conf             4467777443157211478898888766408987995531145-89999999624
Q gi|255764463|r  223 DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY-LDVCFRIKEKF  276 (337)
Q Consensus       223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y-LDii~~~k~~~  276 (337)
                         .|        ....    -|+..=.+-|||++.+=||-.. ...++.++.-|
T Consensus       102 ---PG--------v~Tp----sEi~~A~~~G~~~vK~FPa~~~G~~~lkal~~pf  141 (190)
T cd00452         102 ---PG--------VATP----TEIMQALELGADIVKLFPAEAVGPAYIKALKGPF  141 (190)
T ss_pred             ---CC--------CCCH----HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf             ---78--------7999----9999999879998998955114999999985548


No 111
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=70.06  E-value=10  Score=19.35  Aligned_cols=73  Identities=27%  Similarity=0.385  Sum_probs=47.2

Q ss_pred             CCCCEEECCCCCCCCCCCHHH----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             898811048887863288999----9999999998889367633025633455445421576537999999999730144
Q gi|255764463|r   49 GEKTVESINSMPDVMRMSIDV----AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI  124 (337)
Q Consensus        49 g~~~k~~I~SMPGv~R~Sid~----L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl  124 (337)
                      +...++.-=.|||---| +|.    |-+=++--.++||+++-.+  ++++ +-        |+    +..+.+++.-|||
T Consensus        94 ~~~~~~~~F~~PGkVLH-iDGD~~YL~~Cl~~Ykql~i~a~G~~--i~E~-eq--------P~----~i~~Ll~~~~PDI  157 (287)
T pfam05582        94 GYNENELYFGRPGRVLH-LDGDPEYLDKCLKVYKQLGLPAVGVH--ISEK-EQ--------PE----KIESLLEKYRPDI  157 (287)
T ss_pred             CCCCCCCCCCCCCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEEE--ECCH-HC--------HH----HHHHHHHHHCCCE
T ss_conf             33454322489862887-54989999999999997198458998--3601-25--------29----9999998728998


Q ss_pred             EEEECCCCCHHHCCCCCCCCCCC
Q ss_conf             79861332710011431001365
Q gi|255764463|r  125 GIITDVALDPFTIHGHDGILCDG  147 (337)
Q Consensus       125 ~vi~DVcLc~YT~hGHcGi~~~g  147 (337)
                      +|+|          ||||++++.
T Consensus       158 lViT----------GHD~~~K~~  170 (287)
T pfam05582       158 LVIT----------GHDAYLKNK  170 (287)
T ss_pred             EEEE----------CCHHHHCCC
T ss_conf             9995----------845763377


No 112
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=69.98  E-value=4.8  Score=21.55  Aligned_cols=245  Identities=16%  Similarity=0.110  Sum_probs=118.9

Q ss_pred             CCEEEECCCCCEEECCC----CCCCCCCCHH-------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-------CCC
Q ss_conf             11666758988110488----8786328899-------99999999998889367633025633455445-------421
Q gi|255764463|r   42 LPIFLTSGEKTVESINS----MPDVMRMSID-------VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG-------SHI  103 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~S----MPGv~R~Sid-------~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G-------seA  103 (337)
                      +|+|+.||--.. +.+-    +|.- -||--       -+.+.-.+-++.|-..++-+-.    .-++.|       .++
T Consensus         8 ~~vliLDGG~~t-ELe~rG~~l~~p-lWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TY----qa~~~~~~e~~~~~~~   81 (300)
T COG2040           8 LSVLILDGGLAT-ELERRGCDLSDP-LWSALALVDEPEIVRNVHADFLRAGADIITTATY----QATPEGFAERVSEDEA   81 (300)
T ss_pred             CCEEEECCCHHH-HHHHCCCCCCCH-HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEHHH----HCCHHHHHHHCCHHHH
T ss_conf             877985371467-888547888845-6654330457799999999999715727850103----1498889874356679


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-H
Q ss_conf             576537999999999730144798613327100114310013654462899999999999999628973524667677-9
Q gi|255764463|r  104 IDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-R  182 (337)
Q Consensus       104 ~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-r  182 (337)
                      -.-...--+-.|..|+.+.+-..-.--|+-||-.|=-|-.--+-...-|.-..---.+-..+.+||+|+++---+-+= -
T Consensus        82 ~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~E  161 (300)
T COG2040          82 KQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITE  161 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf             99999889999999998546553213003614530470531766766788999889989999867986787515688389


Q ss_pred             HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEC
Q ss_conf             999999998778857730033666435430101675310244677774431572114788988887664--089879955
Q gi|255764463|r  183 VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ--ESADMLLVK  260 (337)
Q Consensus       183 V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~--EGAD~lMVK  260 (337)
                      -.+|.+.+.+-  ..-.=.||+.+                     |  ++.+.-   .+.+.|+..-++  .++=.+||-
T Consensus       162 a~Aiv~l~~~~--s~p~wISfT~~---------------------d--~~~lr~---Gt~l~eaa~~~~~~~~iaa~gvN  213 (300)
T COG2040         162 AEAIVQLVQEF--SKPAWISFTLN---------------------D--DTRLRD---GTPLSEAAAILAGLPNIAALGVN  213 (300)
T ss_pred             HHHHHHHHHHH--CCCEEEEEEEC---------------------C--CCCCCC---CCCHHHHHHHHHCCCCHHHHCCC
T ss_conf             99999999984--87669999967---------------------9--972678---75299999998157233631204


Q ss_pred             CCHH--HHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCEEE
Q ss_conf             3114--58999999-962499899993461899999999888978---899999999999772699998
Q gi|255764463|r  261 PGLP--YLDVCFRI-KEKFGLPTFAYQVSGEYAMIKAASLQGWIN---KNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       261 Pa~~--yLDii~~~-k~~~~~P~~aYqVSGEYami~~a~~~g~~d---~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                      =.-|  ...+|+.+ +-.+++|+.+|-=|||+-=  . ..+.|--   ..+..-..-...+-+||++|=
T Consensus       214 C~~p~~~~a~i~~l~~~~~~~piivYPNSGe~~d--~-~~k~w~~p~~~~~s~~~~a~~w~~~GA~iiG  279 (300)
T COG2040         214 CCHPDHIPAAIEELSKLLTGKPIIVYPNSGEQYD--P-AGKTWHGPALSADSYSTLAKSWVEAGARIIG  279 (300)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC--C-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             6786767999999985378996698179623258--7-7786889877603889999988714562452


No 113
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=69.06  E-value=10  Score=19.37  Aligned_cols=93  Identities=26%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      +.+.++++.+++.++|=+-  .. +||-.           ..|  -+|++.+++.-  +-+-+                 
T Consensus        62 ~~~~m~~~a~~l~~~~~ni--~v-KIP~t-----------~~g--l~ai~~L~~~g--i~~n~-----------------  106 (211)
T cd00956          62 DAEGMVAEARKLASLGGNV--VV-KIPVT-----------EDG--LKAIKKLSEEG--IKTNV-----------------  106 (211)
T ss_pred             CHHHHHHHHHHHHHHCCCE--EE-EECCC-----------HHH--HHHHHHHHHCC--CCEEE-----------------
T ss_conf             7999999999999738957--99-92685-----------659--99999999859--97677-----------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-----CCC-CC--HHHHHHHHHHHCCCCCCCEEC
Q ss_conf             6544628999999999999996289735246-----676-77--999999999877885773003
Q gi|255764463|r  146 DGEIVNDETIELISHAAVIQADAGADIIAPS-----EMM-DG--RVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-----dMM-DG--rV~aIR~~Ld~~g~~~~~Ims  202 (337)
                              |.---..||+.-|+|||++|+|=     |.- ||  .|..+++.++.+|+. +-||.
T Consensus       107 --------Tav~s~~Qa~~Aa~aga~yvspf~GRi~d~G~d~~~~i~~~~~~~~~~~~~-tkiL~  162 (211)
T cd00956         107 --------TAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD-TKILA  162 (211)
T ss_pred             --------EEECCHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCCC-EEEEE
T ss_conf             --------750689999999987997886303407545898599999999999982998-26885


No 114
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=68.92  E-value=2.6  Score=23.33  Aligned_cols=39  Identities=13%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             HCCCCEEEECCCCC----EEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             73311666758988----11048887863288999999999999
Q gi|255764463|r   39 DLILPIFLTSGEKT----VESINSMPDVMRMSIDVAVEKIKQVA   78 (337)
Q Consensus        39 dLI~PiFV~eg~~~----k~~I~SMPGv~R~Sid~L~~eie~~~   78 (337)
                      .--.|+|+.| ...    ..++..|||||-|+||.|-..+++=+
T Consensus       282 e~~~pl~~~D-IAvPRdvd~~v~~L~~vfLy~vDDL~~~~~~N~  324 (436)
T TIGR01035       282 EAARPLFIVD-IAVPRDVDPEVAKLEGVFLYDVDDLKEVVEENL  324 (436)
T ss_pred             CCCCCEEEEE-CCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf             0158869997-588998637862229669973031389999999


No 115
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=68.29  E-value=11  Score=19.11  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             HHHHHHHHHCCCCEE----EC-----CCCC----CCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             999999996289735----24-----6676----77999999999877885773003
Q gi|255764463|r  159 SHAAVIQADAGADII----AP-----SEMM----DGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       159 ~k~Al~~A~AGaDiv----AP-----SdMM----DGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      .++|+.+.++|||.|    .|     ...+    -.|..||-+..+...-.+++|.+
T Consensus       205 ~~~a~~Li~aGAD~VkVGiGpGsiCTTr~v~GvGvPq~tAi~d~~~~a~~~~v~IIA  261 (404)
T PRK06843        205 KEAALDLINVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA  261 (404)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999999998198999956547877256654586874899999999996057997883


No 116
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=68.00  E-value=5.4  Score=21.15  Aligned_cols=30  Identities=27%  Similarity=0.264  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf             799999999973014479861332710011
Q gi|255764463|r  109 LINEGICAIKKNIPNIGIITDVALDPFTIH  138 (337)
Q Consensus       109 lv~rAIr~IK~~fpdl~vi~DVcLc~YT~h  138 (337)
                      -+.++|+.||+..||++|+.|-|--+|+..
T Consensus       177 ~I~~~i~~vk~~~pd~ivfVDNCYGEFvE~  206 (405)
T pfam06838       177 EIKEMIKFVKEINPNVIVFVDNCYGEFVET  206 (405)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             999999999976899399997886020267


No 117
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=67.75  E-value=11  Score=19.04  Aligned_cols=102  Identities=24%  Similarity=0.376  Sum_probs=73.8

Q ss_pred             ECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             75898811048887863288999999999999888936763302563345544542157653799999999973014479
Q gi|255764463|r   47 TSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI  126 (337)
Q Consensus        47 ~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v  126 (337)
                      .=|-+.+..|.||-...-..++.-++++.++.+.|.--|=+=  +| +.++.             +|++.||+..| +=+
T Consensus        21 ~IGG~~PI~VQSMt~t~T~Dv~at~~Qi~~L~~aGceiVRva--vp-~~~~a-------------~al~~I~~~~~-iPl   83 (367)
T PRK00366         21 PIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVA--VP-DMEAA-------------AALPEIKKQLP-VPL   83 (367)
T ss_pred             EECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHCC-CCE
T ss_conf             047999502575689974438999999999998499989984--59-99999-------------96999998478-970


Q ss_pred             EECCCCCHHH-----CCCCCCCC-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             8613327100-----11431001-365446289999999999999
Q gi|255764463|r  127 ITDVALDPFT-----IHGHDGIL-CDGEIVNDETIELISHAAVIQ  165 (337)
Q Consensus       127 i~DVcLc~YT-----~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~  165 (337)
                      ++|+-+++-.     ..|-+++= .-|.|-.++-+..+.+.|..+
T Consensus        84 vADIHF~~~lAl~a~~~g~~kiRINPGNig~~e~~~~vv~~ak~~  128 (367)
T PRK00366         84 VADIHFDYRLALKAAEAGADALRINPGNIGRDERFKEVVEAAKDY  128 (367)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             312541489999999864111313787568648899999999984


No 118
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.67  E-value=11  Score=19.03  Aligned_cols=51  Identities=16%  Similarity=0.159  Sum_probs=25.6

Q ss_pred             CCCCHHHCCCCEEEEC--CCCCE---EECC---CCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             7788877331166675--89881---1048---88786328899999999999988893
Q gi|255764463|r   33 HRLSVSDLILPIFLTS--GEKTV---ESIN---SMPDVMRMSIDVAVEKIKQVADLGIP   83 (337)
Q Consensus        33 t~Ls~~dLI~PiFV~e--g~~~k---~~I~---SMPGv~R~Sid~L~~eie~~~~lGI~   83 (337)
                      ..+....|=.||+-..  .....   ..+.   .+.-+.||..+..++.++...+.++-
T Consensus        29 ~~~~~~~~~iPIiaAnMDTV~~~~mA~~l~k~GglgvLHR~~~e~~~~~~~~~~~~~~~   87 (326)
T PRK05458         29 VTLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDMHERGLI   87 (326)
T ss_pred             EEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCE
T ss_conf             98568522788885898974888999999978986899855889999999852323727


No 119
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=67.63  E-value=11  Score=19.02  Aligned_cols=166  Identities=17%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301-44798613327100114310
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG  142 (337)
                      ....+.+.+.++.+.+.|+..+.+++...+..     +-++++   -.+.++...+..+ .+-|++-|        |+  
T Consensus        14 ~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~-----~Ls~~E---r~~l~~~~~~~~~~~~pvi~gv--------~~--   75 (281)
T cd00408          14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEE---RKEVIEAVVEAVAGRVPVIAGV--------GA--   75 (281)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-----HCCHHH---HHHHHHHHHHHCCCCCEEEEEC--------CC--
T ss_conf             94999999999999976999899685452431-----389999---9999999999808985099957--------87--


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--E-CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf             0136544628999999999999996289735--2-4667---67799999999987788577300336664354301016
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADII--A-PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR  216 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--A-PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR  216 (337)
                                .+...-.++|...+++|||.+  . |+-.   -|+-+...++..+.   .+.+||=|-.           
T Consensus        76 ----------~s~~~~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~---~~~pi~iYn~-----------  131 (281)
T cd00408          76 ----------NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA---SDLPVILYNI-----------  131 (281)
T ss_pred             ----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC-----------
T ss_conf             ----------8899999999999975999899879977789999999999999855---5997799727-----------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             7531024467777443157211478898888766408987995531145899999996249989999346189
Q gi|255764463|r  217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEY  289 (337)
Q Consensus       217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEY  289 (337)
                            |..    ..+.+++    +-+++.    .+--.++.+|=+-+-+.-+.++.+.++-.+..+.-.+++
T Consensus       132 ------P~~----~g~~l~~----~~l~~L----~~~~nv~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~  186 (281)
T cd00408         132 ------PGR----TGVDLSP----ETIARL----AEHPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDDL  186 (281)
T ss_pred             ------CCC----CCCCCCH----HHHHHH----HCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHHH
T ss_conf             ------753----1677689----999998----489998999848899999999999759970562696688


No 120
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114   This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=67.59  E-value=11  Score=19.01  Aligned_cols=87  Identities=21%  Similarity=0.226  Sum_probs=59.7

Q ss_pred             CCCC-CCHHHHHHHHHHHHHHCCCCEEE---ECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHH--
Q ss_conf             3157-21147889888876640898799---553114589999999624-9989999346189999999988897889--
Q gi|255764463|r  232 YYLD-PANVQEAIREASIDIQESADMLL---VKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKN--  304 (337)
Q Consensus       232 YQmd-~~n~~eA~~e~~~D~~EGAD~lM---VKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~--  304 (337)
                      |... +.|...+++..... . --|.|+   +=|++-=||++.++|+.. .+||.+-----....--.|.+.|.+++=  
T Consensus        23 ~~v~~f~~A~~~l~~l~~~-p-~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIvM~A~~dl~~Av~a~~~GAfEYLpK  100 (471)
T TIGR01818        23 IEVRTFDNAASVLRALARE-P-QPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIVMTAHSDLDSAVAAYQRGAFEYLPK  100 (471)
T ss_pred             CEEEEHHHHHHHHHHHHCC-C-CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCHHCCCC
T ss_conf             5453113189999998447-9-9987986122688248999999985089997798713067899999973583021769


Q ss_pred             -HHHHHHHHHHHHHCCC
Q ss_conf             -9999999999772699
Q gi|255764463|r  305 -DAMMESLLAFKRAGCD  320 (337)
Q Consensus       305 -~~~~E~l~~~kRAGAd  320 (337)
                       ==+-|.+.-.+||=.+
T Consensus       101 PFD~de~v~lv~RA~~~  117 (471)
T TIGR01818       101 PFDLDEAVTLVERALAH  117 (471)
T ss_pred             CCCHHHHHHHHHHHHCC
T ss_conf             87668899999986103


No 121
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=67.52  E-value=3.7  Score=22.25  Aligned_cols=66  Identities=18%  Similarity=0.317  Sum_probs=32.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEE---------CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH
Q ss_conf             7211478898888766408987995---------5311458999999962499899993461899999999888978899
Q gi|255764463|r  235 DPANVQEAIREASIDIQESADMLLV---------KPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKND  305 (337)
Q Consensus       235 d~~n~~eA~~e~~~D~~EGAD~lMV---------KPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~  305 (337)
                      |.++..|++...    +-|+|++=-         ++..|-+++++++++ ..+|+.|               .|-++...
T Consensus        98 D~st~eea~~A~----~~G~D~I~TTL~GYT~~t~~~~pD~~ll~~l~~-~~~pvIa---------------EGri~tPe  157 (192)
T pfam04131        98 DCSTFEEGLNAH----KLGVDIVGTTLSGYTGGSNPAEPDFQLVKTLSE-AGCFVIA---------------EGRYNTPE  157 (192)
T ss_pred             ECCCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE---------------ECCCCCHH
T ss_conf             749999999999----859999982325578999999997899999986-8993998---------------57989999


Q ss_pred             HHHHHHHHHHHHCCCEEEE
Q ss_conf             9999999997726999982
Q gi|255764463|r  306 AMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       306 ~~~E~l~~~kRAGAd~Iit  324 (337)
                      .+.+.+    .+||+.++-
T Consensus       158 ~a~~a~----~~GA~aVVV  172 (192)
T pfam04131       158 LAKKAI----EIGADAVTV  172 (192)
T ss_pred             HHHHHH----HCCCCEEEE
T ss_conf             999999----839989998


No 122
>PRK08904 consensus
Probab=67.32  E-value=8.3  Score=19.93  Aligned_cols=127  Identities=20%  Similarity=0.304  Sum_probs=75.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      -+.+..++.++-+.+-||+.+=+--      .++          -..++|+.++++||++.|=+                
T Consensus        19 ~~~~~a~~~a~al~~~Gi~~iEiTl------rtp----------~a~~~i~~l~~~~p~~~vGa----------------   66 (207)
T PRK08904         19 DDLSTAVDLSRALVEGGIPTLEITL------RTP----------VGLDAIRLIAKEVPNAIVGA----------------   66 (207)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEC------CCC----------HHHHHHHHHHHHCCCCEEEE----------------
T ss_conf             9999999999999987998899957------991----------39999999998689876855----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC
Q ss_conf             36544628999999999999996289735-24667677999999999877885773003366643543010167531024
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD  223 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p  223 (337)
                        |-|.+-       +|+-...+|||+++ +|.  +|-.|..  .+ .++|   ++.+                     |
T Consensus        67 --GTVl~~-------e~~~~a~~aGA~FiVSP~--~~~~v~~--~a-~~~~---i~~i---------------------P  108 (207)
T PRK08904         67 --GTVTNP-------EQLKAVEDAGAVFAISPG--LHESLAK--AG-HNSG---IPLI---------------------P  108 (207)
T ss_pred             --EECCCH-------HHHHHHHHCCCCEEECCC--CCHHHHH--HH-HHCC---CCEE---------------------C
T ss_conf             --313689-------999999984999998489--9899999--99-9839---9765---------------------7


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC
Q ss_conf             467777443157211478898888766408987995531145--89999999624
Q gi|255764463|r  224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF  276 (337)
Q Consensus       224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~  276 (337)
                         |        .....    |+..-.+-|+|++=+=||-.+  ..-|+.++.-|
T Consensus       109 ---G--------v~Tps----Ei~~A~~~G~~~vK~FPA~~~GG~~~lkal~~pf  148 (207)
T PRK08904        109 ---G--------VATPG----EIQLALEHGIDTLKLFPAEVVGGKAMLKALYGPY  148 (207)
T ss_pred             ---C--------CCCHH----HHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCC
T ss_conf             ---8--------69999----9999998799989977622208899999874659


No 123
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.28  E-value=5.9  Score=20.93  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             CCCCCCCCCC----HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8585631289----889998634778887733116667589881104888-78632889999999999998889367633
Q gi|255764463|r   14 HRRMRRNRKS----NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSM-PDVMRMSIDVAVEKIKQVADLGIPAIAIF   88 (337)
Q Consensus        14 ~~R~RRlR~~----~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SM-PGv~R~Sid~L~~eie~~~~lGI~av~LF   88 (337)
                      ..|+-||-++    ..+|++..||.+....+-...|      -+-|..|- |.+.+.+++.+.+.|+-+.+|||+.|.|.
T Consensus        46 d~~~~rL~w~~~~~~~ir~~~~~~gi~i~s~cls~~------~~~Pl~S~D~~~R~~~~e~~~kaI~lA~~LGi~~I~la  119 (283)
T PRK13209         46 DERLARLDWSREQRLALVNALVETGFRVNSMCLSAH------RRFPLGSEDDAVRAQGLEIMRKAIQLAQDLGIRVIQLA  119 (283)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             310035899999999999999981998603305455------57999997999999999999999999998099989968


Q ss_pred             EC
Q ss_conf             02
Q gi|255764463|r   89 PN   90 (337)
Q Consensus        89 p~   90 (337)
                      |+
T Consensus       120 g~  121 (283)
T PRK13209        120 GY  121 (283)
T ss_pred             CC
T ss_conf             87


No 124
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=67.23  E-value=11  Score=18.97  Aligned_cols=58  Identities=29%  Similarity=0.405  Sum_probs=43.0

Q ss_pred             HHHHHCCCCEEEECCCHH----------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             876640898799553114----------5899999996249989999346189999999988897889999999999977
Q gi|255764463|r  247 SIDIQESADMLLVKPGLP----------YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKR  316 (337)
Q Consensus       247 ~~D~~EGAD~lMVKPa~~----------yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kR  316 (337)
                      ..-+.+|||++-|-|-.|          -+|.++.++..+.+|++|-               |-++.+.     +..+++
T Consensus       252 ~~A~~~gaDYig~Gpvf~T~TK~~~~p~Gl~~l~~~~~~~~iPvvAI---------------GGI~~~N-----~~~v~~  311 (345)
T PRK02615        252 AKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYARKEANIPWFAI---------------GGIDKSN-----ISEVLQ  311 (345)
T ss_pred             HHHHHCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCCHHH-----HHHHHH
T ss_conf             99986399979988774258888888789999999998379999999---------------9969999-----999998


Q ss_pred             HCCCEEEE
Q ss_conf             26999982
Q gi|255764463|r  317 AGCDGIFT  324 (337)
Q Consensus       317 AGAd~Iit  324 (337)
                      +||+.|--
T Consensus       312 aGa~gvAV  319 (345)
T PRK02615        312 AGADRVAV  319 (345)
T ss_pred             CCCCEEEE
T ss_conf             59999998


No 125
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=67.15  E-value=11  Score=18.96  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC--CCC-CC-CC-----CC--------HHHHHHHHHHHHHHHH
Q ss_conf             7653799999999973014-479861332710011431--001-36-54-----46--------2899999999999999
Q gi|255764463|r  105 DPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD--GIL-CD-GE-----IV--------NDETIELISHAAVIQA  166 (337)
Q Consensus       105 n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc--Gi~-~~-g~-----Id--------ND~Tl~~L~k~Al~~A  166 (337)
                      +.-.+|.+||+.+|++.++ .-+| --|=.|+|---+.  |-- ++ .+     ..        -|.-.+.+.+-+..|.
T Consensus       109 ~~l~~v~eai~~~r~~L~~~~pLI-GF~G~PwTLasYmieG~~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi  187 (335)
T cd00717         109 EELSYVYEAIKLTRKELPGEVPLI-GFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQI  187 (335)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             565699999999999738888768-8638769999999838998557999877613889999999999999999999999


Q ss_pred             HCCCCEEECCCCCCC
Q ss_conf             628973524667677
Q gi|255764463|r  167 DAGADIIAPSEMMDG  181 (337)
Q Consensus       167 ~AGaDivAPSdMMDG  181 (337)
                      +||||+|.=-|--=|
T Consensus       188 ~aGAd~iqIFDSwag  202 (335)
T cd00717         188 EAGAQAVQIFDSWAG  202 (335)
T ss_pred             HHCCCEEEECCCCCC
T ss_conf             819987885075202


No 126
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=67.14  E-value=11  Score=19.18  Aligned_cols=136  Identities=17%  Similarity=0.234  Sum_probs=77.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      |=+.--+.+...+.++.+.+.||+.+=+=      ..++          ---++|+.++++||++.|=+           
T Consensus        12 pV~r~~~~~~a~~~~~al~~~Gi~~iEiT------l~t~----------~a~~~I~~l~~~~p~~~iGa-----------   64 (196)
T pfam01081        12 PVIVIKDKEDALPLAEALAAGGIRVLEVT------LRTP----------CALDAIRLLRKNRPDALVGA-----------   64 (196)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEE------CCCH----------HHHHHHHHHHHHCCCCEEEE-----------
T ss_conf             99977999999999999998799889994------7982----------79999999996499967999-----------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf             3100136544628999999999999996289735-246676779999999998778857730033666435430101675
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA  218 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA  218 (337)
                             |-|.+-       +|+-...+|||+++ +|.  +|   ..+-+...++|..   .                  
T Consensus        65 -------GTV~~~-------e~~~~a~~aGA~FivSP~--~~---~~v~~~a~~~~i~---~------------------  104 (196)
T pfam01081        65 -------GTVLNA-------QQLAEAAEAGAQFVVSPG--LT---ADLLKHAVDVKIP---L------------------  104 (196)
T ss_pred             -------EECCCH-------HHHHHHHHCCCCEEECCC--CH---HHHHHHHHHCCCC---E------------------
T ss_conf             -------837689-------999999974999999787--63---9999999973996---6------------------


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCE
Q ss_conf             31024467777443157211478898888766408987995531145--89999999624-9989
Q gi|255764463|r  219 ISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPT  280 (337)
Q Consensus       219 ~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~  280 (337)
                            +.|        .....    |+..-.+-|+|++=+=||-.+  +.-++.++.-| .+|.
T Consensus       105 ------iPG--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~p~p~~~f  151 (196)
T pfam01081       105 ------IPG--------VSTPS----EIMLGLDLGLTRFKFFPAEASGGVPAIKALAGPFPQVRF  151 (196)
T ss_pred             ------ECC--------CCCHH----HHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCCCCCEE
T ss_conf             ------378--------59999----999999879998997873101849999998577999869


No 127
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.87  E-value=12  Score=18.92  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             6667589881104888786328899999999999988893676330256334554-454215765379999999997301
Q gi|255764463|r   44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIP  122 (337)
Q Consensus        44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fp  122 (337)
                      +|+.-|..+-|           |.+.+.+.++.+.++|++  ++|+++=.. .+. .+-...-.+|+  +-++.+|++| 
T Consensus        28 ~~~IAGPC~iE-----------s~e~~~~~A~~lk~~g~~--~~r~~~fK~-RTs~~sfrG~G~egL--~~L~~vk~~~-   90 (266)
T PRK13398         28 KIIIAGPCAVE-----------SEEQMVKVAEKLKELGVH--MLRGGAFKP-RTSPYSFQGLGEEGL--KILKEVGDKY-   90 (266)
T ss_pred             EEEEEECCCCC-----------CHHHHHHHHHHHHHHHHH--HCCCCEECC-CCCCCCCCCCCHHHH--HHHHHHHHHC-
T ss_conf             48997577207-----------999999999999983334--333754158-999855568858899--9999999872-


Q ss_pred             CCEEEECCCCCH
Q ss_conf             447986133271
Q gi|255764463|r  123 NIGIITDVALDP  134 (337)
Q Consensus       123 dl~vi~DVcLc~  134 (337)
                      ++-|+|||.-..
T Consensus        91 glpi~TdVh~~~  102 (266)
T PRK13398         91 NMPVVTEVMDTR  102 (266)
T ss_pred             CCCEEEEECCHH
T ss_conf             995477745837


No 128
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.79  E-value=12  Score=18.91  Aligned_cols=169  Identities=12%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             CEEECCCCCCCCCCCHH-----HHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---
Q ss_conf             81104888786328899-----9999999999888-93676330256334554454215765379999999997301---
Q gi|255764463|r   52 TVESINSMPDVMRMSID-----VAVEKIKQVADLG-IPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP---  122 (337)
Q Consensus        52 ~k~~I~SMPGv~R~Sid-----~L~~eie~~~~lG-I~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp---  122 (337)
                      ..+|+++.|-+|-.+.+     .+.+.++.+++-| |.+|.|=     . |+.       +++-+.+..+.++.-.-   
T Consensus         5 ~~~p~~~~~rLYLITP~~~d~~~~~~~l~~aL~~g~Va~vqlR-----~-k~~-------d~~~~~~~a~~L~~lc~~~g   71 (221)
T PRK06512          5 AMKPIESRCRIVLVAPPIADGAALAKLLRAALSGGDVASVILP-----D-YGL-------DEATFQKQAEKYVPVIQEAG   71 (221)
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEE-----C-CCC-------CHHHHHHHHHHHHHHHHHCC
T ss_conf             7899999875899789974667899999999846985599975-----7-999-------99999999999999999829


Q ss_pred             CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             44798613327100114310013654462899999999999999628973524667677999999999877885773003
Q gi|255764463|r  123 NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       123 dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      -.+||                       ||..     ..   -.+.|||-|--. --|.-+...|+.|-.+-     |..
T Consensus        72 v~lII-----------------------ND~~-----dl---A~~~gADGVHlG-q~d~~~~~aR~~lg~~~-----IIG  114 (221)
T PRK06512         72 AAALI-----------------------AGDT-----RI---AGRVKADGLHIE-GNAAALAEAIEKHAPKM-----IVG  114 (221)
T ss_pred             CCEEE-----------------------CCCH-----HH---HHHCCCCEEEEC-CCCCCHHHHHHHHCCCC-----EEE
T ss_conf             91998-----------------------8979-----99---997099866526-87531999999847886-----786


Q ss_pred             HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC---------HHHHHHHHHHH
Q ss_conf             366643543010167531024467777443157211478898888766408987995531---------14589999999
Q gi|255764463|r  203 YVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG---------LPYLDVCFRIK  273 (337)
Q Consensus       203 YsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa---------~~yLDii~~~k  273 (337)
                      .                          .+|    .+..+|+..    .++|||+|.+-|=         -.-|+.++..+
T Consensus       115 ~--------------------------~~~----~s~~~A~~A----~e~GADYv~fG~~~~~~k~~a~~~~l~~l~~~~  160 (221)
T PRK06512        115 F--------------------------GNL----RDRHGAMEV----GELQPDYLFFGKLGADNKPEAHPRNLSLAEWWA  160 (221)
T ss_pred             E--------------------------ECC----CCHHHHHHH----HHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             4--------------------------057----889999999----973998576578788889988754258999999


Q ss_pred             HHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             624998999934618999999998889788999999999997726999982
Q gi|255764463|r  274 EKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       274 ~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      +.+.+|++|.               |-++.     |....+-++|||+|--
T Consensus       161 ~~~~iP~VAI---------------GGIt~-----~n~~~v~~aGad~vAV  191 (221)
T PRK06512        161 EMIEIPCIVQ---------------AGSDL-----ASIVEVAETGAEFVAL  191 (221)
T ss_pred             HCCCCCEEEE---------------CCCCH-----HHHHHHHHHCCCEEEE
T ss_conf             7479998998---------------27899-----9999999819989988


No 129
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=66.64  E-value=12  Score=18.89  Aligned_cols=100  Identities=26%  Similarity=0.412  Sum_probs=68.7

Q ss_pred             ECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             75898811048887863288999999999999888936763302563345544542157653799999999973014479
Q gi|255764463|r   47 TSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI  126 (337)
Q Consensus        47 ~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v  126 (337)
                      .=|-+.+..|.||-...-..++.-++++.++.+.|.--|=+=  +| +.++.             ++++.||+.+| +-+
T Consensus        10 ~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva--vp-~~~~a-------------~al~~I~~~~~-iPl   72 (345)
T pfam04551        10 PIGGDAPISVQSMTNTDTRDVEATVAQIKRLEEAGCDIVRVA--VP-DMEAA-------------EALKEIKKQSP-IPL   72 (345)
T ss_pred             EECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHCC-CCC
T ss_conf             267989576675689986208999999999998599989988--79-99999-------------84999998589-971


Q ss_pred             EECCCCCHH-----HCCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf             861332710-----01143100136-54462899999999999
Q gi|255764463|r  127 ITDVALDPF-----TIHGHDGILCD-GEIVNDETIELISHAAV  163 (337)
Q Consensus       127 i~DVcLc~Y-----T~hGHcGi~~~-g~IdND~Tl~~L~k~Al  163 (337)
                      ++|+-+++-     -.+|-+++=-| |.|-.++-++.+.+.|.
T Consensus        73 VADIHF~~~lAl~a~~~g~~kiRINPGNig~~~~~~~vv~~ak  115 (345)
T pfam04551        73 VADIHFDYRLALEAIEAGVDKIRINPGNIGRREKVKEVVEAAK  115 (345)
T ss_pred             EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             4004248999999998622015679977486787899999999


No 130
>pfam01076 Mob_Pre Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation).
Probab=65.98  E-value=12  Score=18.81  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=34.9

Q ss_pred             CCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             5379999999997301-44798613327100114310013
Q gi|255764463|r  107 DNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus       107 dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      +.+...+++-++++|| +=+|-+-|-+|+-|.|=|++++-
T Consensus       101 ~~~~~~~~~~l~~~~G~~nv~~a~~H~DE~tPH~H~~~vP  140 (196)
T pfam01076       101 KEFFETAFKFFEERYGKENILYAVVHLDEATPHMHMGVVP  140 (196)
T ss_pred             HHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEEEEE
T ss_conf             9999999999998658112899998547899833799998


No 131
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=64.51  E-value=13  Score=18.62  Aligned_cols=173  Identities=18%  Similarity=0.225  Sum_probs=94.4

Q ss_pred             ECCCCCCCCCCC------HHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             048887863288------9999999999998889367633--02563345544542157653799999999973014479
Q gi|255764463|r   55 SINSMPDVMRMS------IDVAVEKIKQVADLGIPAIAIF--PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI  126 (337)
Q Consensus        55 ~I~SMPGv~R~S------id~L~~eie~~~~lGI~av~LF--p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v  126 (337)
                      ..+.+||-.+|.      ++..+++++.+.+.|+-+|++=  +-+|-. |+ -+-|.   -..+-+.++++|..+. +- 
T Consensus        10 HL~pLPGsP~~~~~~~~iie~A~~ea~~l~~~GvDgvivEN~~D~Py~-~~-~~~et---vaamt~i~~~v~~~~~-iP-   82 (254)
T pfam03437        10 HLLPLPGSPGYKANLDAVIDKAVSDAMALEEGGFDAVILENYGDAPYL-KT-VGPET---VAAMTVIAGEVKSDVS-IP-   82 (254)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CC-CCHHH---HHHHHHHHHHHHHHCC-CC-
T ss_conf             379999898889999999999999999999779988998068997774-67-76698---9999999999987448-87-


Q ss_pred             EECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE----------CCCCCCCHHHHHHHHHHHCC
Q ss_conf             86133271001143100--1365446289999999999999962897352----------46676779999999998778
Q gi|255764463|r  127 ITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIA----------PSEMMDGRVQEIRKKLDSHG  194 (337)
Q Consensus       127 i~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA----------PSdMMDGrV~aIR~~Ld~~g  194 (337)
                                    |||  +.++   +.+++.+       -+.+|||+|=          +.+.++|+-+.+-+.-..-+
T Consensus        83 --------------~GvnvL~nd---~~aalai-------A~a~ga~FIRv~~~~g~~~~d~G~~~~~a~~~~r~R~~l~  138 (254)
T pfam03437        83 --------------LGINVLRND---AVAALAI-------AYAVGADFIRVNVLTGVAASDQGILEGNAGELARYRKLLP  138 (254)
T ss_pred             --------------EEEEEECCC---CHHHHHH-------HHHHCCCEEEECCEECEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf             --------------367776178---5899999-------9982997698713765333577531553899999999719


Q ss_pred             CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC----HHHHHHHH
Q ss_conf             85773003366643543010167531024467777443157211478898888766408987995531----14589999
Q gi|255764463|r  195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG----LPYLDVCF  270 (337)
Q Consensus       195 ~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa----~~yLDii~  270 (337)
                      - ++.|+.--                      -.|.++.+..+...|..++..  ..-+||-|.|-=.    -+-++-|.
T Consensus       139 a-~v~i~aDV----------------------~~Kh~~~l~~~~~~~~~~~~~--~~~~aDaiivTG~~TG~~~~~~~l~  193 (254)
T pfam03437       139 S-RIKILADV----------------------HVKHAVHLGNRDIESAVLDTI--ERGLADAVILSGKTTGGEVDLEELK  193 (254)
T ss_pred             C-CCEEEEEE----------------------CCCCCCCCCCCCHHHHHHHHH--HHCCCCEEEECCCCCCCCCCHHHHH
T ss_conf             9-95899755----------------------001254579999899999999--8268989997873027999999999


Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             9996249989999
Q gi|255764463|r  271 RIKEKFGLPTFAY  283 (337)
Q Consensus       271 ~~k~~~~~P~~aY  283 (337)
                      ++|+...+|+.+=
T Consensus       194 ~vk~~~~~PvlvG  206 (254)
T pfam03437       194 LAKETVPVPVLVG  206 (254)
T ss_pred             HHHHHCCCCEEEE
T ss_conf             9996269988995


No 132
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=64.48  E-value=13  Score=18.62  Aligned_cols=223  Identities=16%  Similarity=0.148  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE--EECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHH----------CCCEEEECCCCC
Q ss_conf             999999999999888936763--3025633455445-421576537999999999730----------144798613327
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAI--FPNIPMDLRNNTG-SHIIDPDNLINEGICAIKKNI----------PNIGIITDVALD  133 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~L--Fp~I~~~~Kd~~G-seA~n~dglv~rAIr~IK~~f----------pdl~vi~DVcLc  133 (337)
                      .|.+.+.=++-++.|-.-+..  |...+..+++. | ++. .-..+..++++.-|+..          ++..|..++  -
T Consensus        45 Pd~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~-g~~~~-~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~VaGsl--g  120 (308)
T PRK09485         45 PELIYQVHLDYFRAGADIAITASYQATFQGFAAR-GLSEA-EAEALIRRSVELAKEARDDVWAEKPQRPYLLVAGSV--G  120 (308)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHC-CCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC--C
T ss_conf             2999999999998087878724550378989874-99999-999999999999999999975413688870698415--7


Q ss_pred             HHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCE-ECHHHHHHH
Q ss_conf             1001143100--136544628999999999999996289735246676779-999999998778857730-033666435
Q gi|255764463|r  134 PFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR-VQEIRKKLDSHGHINVGI-MPYVAKFNS  209 (337)
Q Consensus       134 ~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~I-msYsaKfaS  209 (337)
                      ||...=.+|-  ..+-.+.-++-.+....|.-.+.++|+|++.-=-|-|-. +.++.+++.+  +.+.++ +|.+.+-. 
T Consensus       121 P~g~~l~~g~ey~g~~~~~~~~~~~~~~~qi~~l~~~gvD~il~ET~~~~~E~~~~~~~~~~--~~~~pv~~s~t~~~~-  197 (308)
T PRK09485        121 PYGAYLADGSEYRGDYGLSVEELQDFHRPRIEALLDAGADLLALETIPNLDEAEALVELLKE--FPQVPAWLSFTLRDG-  197 (308)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHH--CCCCCEEEEEEECCC-
T ss_conf             54442378866678789999999999999999997278988999603999999999999985--579968999997689-


Q ss_pred             HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC--CCHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             430101675310244677774431572114788988887664089879955--311458999999962499899993461
Q gi|255764463|r  210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK--PGLPYLDVCFRIKEKFGLPTFAYQVSG  287 (337)
Q Consensus       210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK--Pa~~yLDii~~~k~~~~~P~~aYqVSG  287 (337)
                                       |    .-.+-....+++..+..  ....|.+++-  .--..+..++.+++.+..|+.+|-=+|
T Consensus       198 -----------------~----~l~~G~~l~~a~~~~~~--~~~v~~vGiNC~~p~~~~~~l~~l~~~~~~pi~~yPNaG  254 (308)
T PRK09485        198 -----------------T----HISDGTPLAEAAAALAA--YPQVVAVGINCTAPELVTPAIATLKAVTDKPLIVYPNSG  254 (308)
T ss_pred             -----------------C----CCCCCCCHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             -----------------8----41899919999999973--788536863178999999999999970697799993899


Q ss_pred             HHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHCCCEE
Q ss_conf             89999999988897---889999999999977269999
Q gi|255764463|r  288 EYAMIKAASLQGWI---NKNDAMMESLLAFKRAGCDGI  322 (337)
Q Consensus       288 EYami~~a~~~g~~---d~~~~~~E~l~~~kRAGAd~I  322 (337)
                      +--   ....++|.   .......|....+...||++|
T Consensus       255 ~~~---d~~~~~~~~~~~~~~~~~~~~~~w~~~Ga~ii  289 (308)
T PRK09485        255 EVY---DAVTKTWHGPREFSATLAEQAPEWLAAGARLI  289 (308)
T ss_pred             CCC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             988---97555667898899999999999998799199


No 133
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.     The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported.   This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=64.43  E-value=6.3  Score=20.72  Aligned_cols=80  Identities=26%  Similarity=0.331  Sum_probs=46.1

Q ss_pred             ECCCCC-EEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             758988-1104888786328899999999999----98889367633025633455445421576537999999999730
Q gi|255764463|r   47 TSGEKT-VESINSMPDVMRMSIDVAVEKIKQV----ADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI  121 (337)
Q Consensus        47 ~eg~~~-k~~I~SMPGv~R~Sid~L~~eie~~----~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f  121 (337)
                      +++... ....=.|||---| +|.=...++.|    .++|++.+=+. +  .+++=+.            +....|+.-=
T Consensus        99 t~~~~~~~~~~F~~PGrVLH-~DGD~~YL~~C~~~Y~~~gv~V~G~~-~--~E~emPe------------~v~~L~~~~~  162 (292)
T TIGR02855        99 TGGYKNVEQLYFGMPGRVLH-IDGDPEYLRKCLKLYKKLGVPVVGIH-C--KEKEMPE------------KVLDLIEEVR  162 (292)
T ss_pred             HHHHCCHHHHHCCCCCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEEE-E--EECCCCH------------HHHHHHHHHC
T ss_conf             32210123332248864774-22888899999998866197279999-8--4121808------------8999997309


Q ss_pred             CCCEEEECCCCCHHHCCCCCCCCCCCCCCHH
Q ss_conf             1447986133271001143100136544628
Q gi|255764463|r  122 PNIGIITDVALDPFTIHGHDGILCDGEIVND  152 (337)
Q Consensus       122 pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND  152 (337)
                      |||+|||          |||++.++..--+|
T Consensus       163 PDIlViT----------GHDa~~K~~~~~~D  183 (292)
T TIGR02855       163 PDILVIT----------GHDAYSKNKGNYGD  183 (292)
T ss_pred             CCEEEEE----------CCCCEEECCCCHHH
T ss_conf             9789994----------66630216787113


No 134
>PRK08041 consensus
Probab=64.42  E-value=0.63  Score=27.48  Aligned_cols=143  Identities=16%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf             786328899999----99999998889367633025633455445---42157653799999999973014479861332
Q gi|255764463|r   60 PDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTG---SHIIDPDNLINEGICAIKKNIPNIGIITDVAL  132 (337)
Q Consensus        60 PGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~G---seA~n~dglv~rAIr~IK~~fpdl~vi~DVcL  132 (337)
                      =|+.|--.|...    +....+++.|.-.=-+.|+.....+.+.-   .|...+ ......+.++|-.|+..+.+|----
T Consensus       168 ~gIsRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvpv~~~~~~~~~~~~~De~~r~-~tt~e~La~L~P~f~~~GtvTagns  246 (391)
T PRK08041        168 YGISRELQDAYALSSQQKARAAIDAGRFKDEIVPVVTQSNGQTLVVDTDEQPRT-DASAEGLARLNPSFDSLGSVTAGNA  246 (391)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCEEEECCCCCCCC-CCCHHHHHHCCCCCCCCCCEECCCC
T ss_conf             598999999999999999999987599753410478605897046446566478-9997677326877588997767877


Q ss_pred             CHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECHHHHHH
Q ss_conf             710011431001-3654462899999999999999628973524667677999999999877885--773003366643
Q gi|255764463|r  133 DPFTIHGHDGIL-CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPYVAKFN  208 (337)
Q Consensus       133 c~YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsYsaKfa  208 (337)
                      |+- ++|=+.++ ...+.-....++.++++ +.++.+|+|   |+.|--|-|.++|++|+.+|.+  |+-+.---==||
T Consensus       247 s~~-sDGAAavll~s~~~a~~~gl~p~a~i-~~~~~~g~d---P~~m~~~pv~A~~k~L~~agl~~~Did~~EinEAFA  320 (391)
T PRK08041        247 SSI-NDGAAAVMMMSEAKARALNLPVLARI-RAFASVGVD---PALMGIAPVYATRRCLERVGWQLADVDLIEANEAFA  320 (391)
T ss_pred             CCC-CCCHHHHHHCCHHHHHHCCCCCEEEE-EEEEEEECC---HHHHHHCHHHHHHHHHHHCCCCHHHCCEEEEEHHHH
T ss_conf             864-55247777538999997799833999-964366518---889603699999999998599854486788604779


No 135
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=64.25  E-value=5.4  Score=21.17  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHCCCCCCCEEC
Q ss_conf             999999999877885773003
Q gi|255764463|r  182 RVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      -+..+|+.||++||.+|.|+.
T Consensus       271 li~~vR~~LD~aG~~~vKIva  291 (355)
T PRK07188        271 LIFALRKALDENGGKHVKIIV  291 (355)
T ss_pred             HHHHHHHHHHHCCCCCCEEEE
T ss_conf             999999999767998717999


No 136
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=63.61  E-value=13  Score=18.51  Aligned_cols=111  Identities=11%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf             2889999999999998-8893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r   64 RMSIDVAVEKIKQVAD-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        64 R~Sid~L~~eie~~~~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc  141 (337)
                      ....+.+.+.++.+++ .|++++.+++...+...     -...+.   .+.++...+..+ .+-||+-|.        | 
T Consensus        17 ~iD~~~~~~~i~~li~~~Gv~gi~v~GstGE~~~-----Ls~~Er---~~l~~~~~~~~~~r~pvi~gv~--------~-   79 (288)
T cd00954          17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFL-----LSVEER---KQIAEIVAEAAKGKVTLIAHVG--------S-   79 (288)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-----CCHHHH---HHHHHHHHHHCCCCCEEEECCC--------C-
T ss_conf             9799999999999998779989997935425213-----899999---9999999997289860873588--------6-


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCC---CCCCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf             001365446289999999999999962897352---466---767799999999987788577300336
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSE---MMDGRVQEIRKKLDSHGHINVGIMPYV  204 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYs  204 (337)
                                 .+.....++|-...++|||.|.   |.=   .-|+-+..-++..+..  .+.+||-|-
T Consensus        80 -----------~s~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~~~~~~~i~~~~--~~~piiiYn  135 (288)
T cd00954          80 -----------LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA--ASLPMIIYH  135 (288)
T ss_pred             -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEC
T ss_conf             -----------45999999999998649786773799887999799999999999857--799654321


No 137
>PRK06857 consensus
Probab=63.36  E-value=11  Score=18.97  Aligned_cols=136  Identities=18%  Similarity=0.249  Sum_probs=77.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      |=+.--+.+...+.++-+.+-||+.+=+--      .++.          -..+|+.+++++||+.|=+           
T Consensus        16 pVir~~~~~~a~~~~~al~~gGi~~iEiTl------rt~~----------a~~~I~~l~~~~p~~~vGa-----------   68 (209)
T PRK06857         16 PVIAIDDAEDILPLAKVLAENGLPVAEITF------RSAA----------AAEAIRLLREAYPDMLIGA-----------   68 (209)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEEC------CCCC----------HHHHHHHHHHHCCCCEEEE-----------
T ss_conf             999759999999999999987998899958------9932----------9999999997589948999-----------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf             3100136544628999999999999996289735-246676779999999998778857730033666435430101675
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA  218 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA  218 (337)
                             |-|.+-       +|+-...+|||+++ .|.  +|-.|..   ...+++   ++.+                 
T Consensus        69 -------GTV~~~-------e~~~~a~~aGA~FiVSP~--~~~~v~~---~a~~~~---i~~i-----------------  109 (209)
T PRK06857         69 -------GTVLTP-------EQVDAAKEAGADFIVSPG--FNPNTVK---YCQQLN---IPIV-----------------  109 (209)
T ss_pred             -------EECCCH-------HHHHHHHHCCCCEEECCC--CCHHHHH---HHHHCC---CCEE-----------------
T ss_conf             -------937679-------999999983999999089--9999999---999749---9654-----------------


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCE
Q ss_conf             31024467777443157211478898888766408987995531145--89999999624-9989
Q gi|255764463|r  219 ISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPT  280 (337)
Q Consensus       219 ~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~  280 (337)
                          |   |        .....    |+..-.+-|+|++=+=||-..  ++-++.++.-| ++|+
T Consensus       110 ----P---G--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~~  155 (209)
T PRK06857        110 ----P---G--------VNNPS----LVEQALEMGLTTLKFFPAEASGGVNMLKALLAPYPNLQI  155 (209)
T ss_pred             ----C---C--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf             ----7---8--------79999----999999879998997866212669999998653899809


No 138
>PRK08104 consensus
Probab=63.02  E-value=11  Score=18.99  Aligned_cols=132  Identities=17%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      -+.+...+.++-+.+-||+.+=+=-      .++.          --.+|+.+++++||+.|=+                
T Consensus        24 ~~~~~a~~la~al~~gGi~~iEiTl------rt~~----------a~~~I~~l~~~~p~~~vGa----------------   71 (212)
T PRK08104         24 NKLEHAVPLAKALVAGGVRVLEVTL------RTPC----------ALEAIRAIAKEVPEAIVGA----------------   71 (212)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEC------CCCH----------HHHHHHHHHHHCCCCEEEE----------------
T ss_conf             9999999999999987998899968------8814----------9999999998689856854----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf             36544628999999999999996289735246676779999999998778857730033666435430101675310244
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL  224 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~  224 (337)
                        |-|.|-+       |+-...+|||+++---.+ |-.|...  + .++   +++.+                       
T Consensus        72 --GTV~~~e-------~~~~ai~aGA~FiVSP~~-~~~v~~~--a-~~~---~i~~i-----------------------  112 (212)
T PRK08104         72 --GTVLNPQ-------QLAEVTEAGAQFAISPGL-TEELLKA--A-TEG---TIPLI-----------------------  112 (212)
T ss_pred             --EECCCHH-------HHHHHHHCCCCEEECCCC-CHHHHHH--H-HHC---CCCEE-----------------------
T ss_conf             --2026799-------999999859999984899-9999999--9-982---99765-----------------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHCC-CCE
Q ss_conf             67777443157211478898888766408987995531145--899999996249-989
Q gi|255764463|r  225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKFG-LPT  280 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~~-~P~  280 (337)
                       .|        .....    |+..-.+-|+|++=+=||-.+  ++-|+.++.-|. +|.
T Consensus       113 -PG--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~f  158 (212)
T PRK08104        113 -PG--------ISTVS----ELMLGMDYGLTEFKFFPAEANGGVKALQAISGPFSQIRF  158 (212)
T ss_pred             -CC--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf             -67--------69999----999999879997997876213749999998555899818


No 139
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.83  E-value=10  Score=19.35  Aligned_cols=135  Identities=19%  Similarity=0.226  Sum_probs=77.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf             63288999999999999888936763302563345544542157653799999999973014479861332710011431
Q gi|255764463|r   62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc  141 (337)
                      +.-.+.+..++.++-+.+-||+.+=+=-      .++.+          .++|+.++++||++.|=+             
T Consensus        19 lr~~~~~~a~~~~~al~~gGi~~iEiTl------~t~~a----------~~~I~~l~~~~p~~~iGa-------------   69 (210)
T PRK07455         19 IRAPDLELGLQMAEAVAAGGMRLIEITW------NSDQP----------AELISQLREKLPECIIGT-------------   69 (210)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEEC------CCCCH----------HHHHHHHHHHCCCCEEEE-------------
T ss_conf             9759999999999999987998899968------99889----------999999998789968988-------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf             00136544628999999999999996289735-24667677999999999877885773003366643543010167531
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS  220 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~  220 (337)
                           |-|.+-       +|+-...+|||+++ .|.  +|-.|  |+.+ .++|   ++.+                   
T Consensus        70 -----GTV~~~-------e~~~~a~~aGA~FiVSP~--~~~~v--i~~a-~~~~---i~~i-------------------  110 (210)
T PRK07455         70 -----GTLLTL-------EDLEEAIAAGAQFCFTPH--VDLEL--IQAA-VAAD---IPII-------------------  110 (210)
T ss_pred             -----EECCCH-------HHHHHHHHCCCCEEECCC--CCHHH--HHHH-HHCC---CCEE-------------------
T ss_conf             -----818789-------999999986999998688--88999--9999-9829---9765-------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH--HHHHHHHHHHHC-CCCEE
Q ss_conf             02446777744315721147889888876640898799553114--589999999624-99899
Q gi|255764463|r  221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP--YLDVCFRIKEKF-GLPTF  281 (337)
Q Consensus       221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~--yLDii~~~k~~~-~~P~~  281 (337)
                        |   |        .....    |+..-.+-|||++=+=||-.  =.+-|+.++.-| .+|..
T Consensus       111 --P---G--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~GG~~ylkal~~p~p~i~~~  157 (210)
T PRK07455        111 --P---G--------ALTPT----EIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLI  157 (210)
T ss_pred             --C---C--------CCCHH----HHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCCCCCCEE
T ss_conf             --8---8--------69999----9999998699847750513206799999986548999388


No 140
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=62.69  E-value=14  Score=18.40  Aligned_cols=137  Identities=18%  Similarity=0.237  Sum_probs=79.4

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCC----HHHCCCCEEEEC------CCC-CEEECC---CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             85856312898899986347788----877331166675------898-811048---8878632889999999999998
Q gi|255764463|r   14 HRRMRRNRKSNWIREMVREHRLS----VSDLILPIFLTS------GEK-TVESIN---SMPDVMRMSIDVAVEKIKQVAD   79 (337)
Q Consensus        14 ~~R~RRlR~~~~iR~Lv~Et~Ls----~~dLI~PiFV~e------g~~-~k~~I~---SMPGv~R~Sid~L~~eie~~~~   79 (337)
                      |.-++-.=..+.++.|++|-.-.    ..==|||-||..      +.+ .+..|-   +.|-= ..+.+.-+.|++.+++
T Consensus        17 hT~L~~~aT~~~I~~Lc~eA~~~~~~~aAVCV~P~~V~~a~~~L~~~~~~~V~vatVvgFP~G-~~~~~~k~~E~~~Ai~   95 (258)
T PRK05283         17 LTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHG-NDDIAIALAETRAAIA   95 (258)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-CCCHHHHHHHHHHHHH
T ss_conf             678998899999999999997436984599989999999999997348998857999367999-9957789999999998


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             88936763302563345544542157653799999999973014---479861332710011431001365446289999
Q gi|255764463|r   80 LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN---IGIITDVALDPFTIHGHDGILCDGEIVNDETIE  156 (337)
Q Consensus        80 lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd---l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~  156 (337)
                      .|-.-|-+---+. ..|+..       ...+..-|+.+|+..++   +-||-.                .+....++-+.
T Consensus        96 ~GAdEIDmVin~~-~~~~g~-------~~~v~~~i~~v~~a~~~~~~LKVIlE----------------T~~L~~~e~I~  151 (258)
T PRK05283         96 YGADEVDVVFPYR-ALMAGN-------EQVGFELVKACKEACAANVLLKVIIE----------------TGELKDEALIR  151 (258)
T ss_pred             CCCCEEEEEEEHH-HHHCCC-------HHHHHHHHHHHHHHCCCCCEEEEEEE----------------ECCCCCHHHHH
T ss_conf             7995665445089-885788-------79999999999998089843899974----------------03478589999


Q ss_pred             HHHHHHHHHHHCCCCEEECCCC
Q ss_conf             9999999999628973524667
Q gi|255764463|r  157 LISHAAVIQADAGADIIAPSEM  178 (337)
Q Consensus       157 ~L~k~Al~~A~AGaDivAPSdM  178 (337)
                      ..+++|   -+||||+|=-|-=
T Consensus       152 ~As~~a---~~aGADFVKTSTG  170 (258)
T PRK05283        152 KASEIA---IKAGADFIKTSTG  170 (258)
T ss_pred             HHHHHH---HHHCCCEEECCCC
T ss_conf             999999---9969798888999


No 141
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=62.07  E-value=7.6  Score=20.19  Aligned_cols=144  Identities=24%  Similarity=0.371  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCCCCH-----------HHHHHHH-HHHCCCCCCCEECHHHHHHHHHHCCHHHHH--
Q ss_conf             99999999999996289735246676779-----------9999999-987788577300336664354301016753--
Q gi|255764463|r  154 TIELISHAAVIQADAGADIIAPSEMMDGR-----------VQEIRKK-LDSHGHINVGIMPYVAKFNSSFYGPYRDAI--  219 (337)
Q Consensus       154 Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-----------V~aIR~~-Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~--  219 (337)
                      -...|+++.-.-.+||||++= =|+|||+           +.+||+. -+.  .-||=.|=   +=-+.|+..|=+|=  
T Consensus        10 Df~rLgee~~~v~~AGaD~iH-~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~--P~DVHLMv---~~pd~~~~~Fa~aGA~   83 (216)
T TIGR01163        10 DFARLGEEVKAVEEAGADLIH-VDVMDGHFVPNLTFGPPVLEALRKYGTKL--PIDVHLMV---ENPDRYIEDFAEAGAD   83 (216)
T ss_pred             CHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCHHHHHHHHHHCCCC--CEEEEECC---CCHHHHHHHHHHHCCC
T ss_conf             477799999999966997899-86247971771002778999887407952--12663035---7857778899970899


Q ss_pred             ------HCCC---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE---ECCCH-------HHHHHHHHHHH
Q ss_conf             ------1024---------46777744315721147889888876640898799---55311-------45899999996
Q gi|255764463|r  220 ------STRD---------LLKGDKKTYYLDPANVQEAIREASIDIQESADMLL---VKPGL-------PYLDVCFRIKE  274 (337)
Q Consensus       220 ------~S~p---------~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM---VKPa~-------~yLDii~~~k~  274 (337)
                            +++.         +-.|=+..==++|+..-|++.++..+    +|+|.   |-||-       -.|+=||.+|+
T Consensus        84 ~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TPl~~~~~~L~~----~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~  159 (216)
T TIGR01163        84 IITVHAEATEHIHRLLQLIKELGAKAGIVLNPATPLEALEYVLED----VDLVLLMSVNPGFGGQKFIPETLEKIRELRK  159 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH----CCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             899843776267999999997189706886799998789989876----2989988760799884110578999999999


Q ss_pred             HCC----CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             249----98999934618999999998889788999999999997726999982
Q gi|255764463|r  275 KFG----LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       275 ~~~----~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      ..+    -+-.-=+|            -|-+|.+     +-..+++||||.+++
T Consensus       160 ~id~~~~~~~~~ieV------------DGGv~~~-----ni~~~~~AGAD~~Va  196 (216)
T TIGR01163       160 MIDKLELGLSILIEV------------DGGVNED-----NIAEVAEAGADILVA  196 (216)
T ss_pred             HHHHHCCCCCEEEEE------------CCCCCHH-----HHHHHHHCCCCEEEE
T ss_conf             998602799558997------------1798976-----799999758989998


No 142
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.83  E-value=10  Score=19.36  Aligned_cols=131  Identities=20%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      +.+...+.++-+.+.||+.+=+--      .++.          -..+|+.++++||++.|=+                 
T Consensus        25 ~~~~a~~~~~al~~gGi~~iEITl------rt~~----------a~~~I~~l~~~~p~~~vGa-----------------   71 (212)
T PRK06015         25 DVEHAVPLARALARGGLPAIEITL------RTPA----------ALDAIRAVAAEVEEAIVGA-----------------   71 (212)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEC------CCCC----------HHHHHHHHHHHCCCCEEEE-----------------
T ss_conf             999999999999987998899968------9951----------9999999998699967954-----------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf             6544628999999999999996289735-246676779999999998778857730033666435430101675310244
Q gi|255764463|r  146 DGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL  224 (337)
Q Consensus       146 ~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~  224 (337)
                       |-|.+-       +|+-...+|||+++ +|.  +|-.|..  .+. +   .+++.+                       
T Consensus        72 -GTVl~~-------e~~~~a~~aGA~FiVSP~--~~~~v~~--~a~-~---~~i~~i-----------------------  112 (212)
T PRK06015         72 -GTILNA-------KQFEDAAKAGSRFIVSPG--TTQELLA--AAN-D---SDVPLL-----------------------  112 (212)
T ss_pred             -EECCCH-------HHHHHHHHCCCCEEECCC--CCHHHHH--HHH-H---CCCCEE-----------------------
T ss_conf             -211569-------999999984998998589--9999999--999-8---399773-----------------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCEE
Q ss_conf             67777443157211478898888766408987995531145--89999999624-99899
Q gi|255764463|r  225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPTF  281 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~~  281 (337)
                       .|        .....    |+..-.+-|+|++=+=||-..  ...|+.++.-| .+++.
T Consensus       113 -PG--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~~~  159 (212)
T PRK06015        113 -PG--------AITPS----EVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFC  159 (212)
T ss_pred             -CC--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEE
T ss_conf             -78--------69999----9999998799989978430016899999985779999888


No 143
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.79  E-value=14  Score=18.30  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHH
Q ss_conf             145899999996249989999346189999999988897889
Q gi|255764463|r  263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKN  304 (337)
Q Consensus       263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~  304 (337)
                      ..+++..+.+|+.+++||.+-.-=.+-.+...+.+.|+.|.-
T Consensus       278 ~~~~~~a~~ik~~~~~Pvi~~G~i~~~~~ae~~l~~g~~DlV  319 (338)
T cd04733         278 AYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI  319 (338)
T ss_pred             CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf             105999999999849979998998999999999987995108


No 144
>TIGR02841 spore_YyaC putative sporulation protein YyaC; InterPro: IPR009665   This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown..
Probab=61.71  E-value=14  Score=18.29  Aligned_cols=57  Identities=23%  Similarity=0.377  Sum_probs=43.7

Q ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC
Q ss_conf             9999888936763302563345544542157653799999999973014-479861332710011431
Q gi|255764463|r   75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD  141 (337)
Q Consensus        75 e~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc  141 (337)
                      .++..+..+.|-+||-    +.++-  +|-|    ++..++.|+++|++ .+|..|-||=..++=||=
T Consensus        24 ~~L~~~~~~~~~V~GT----L~~PV--HA~N----L~e~l~~I~k~h~~PFiIAiDACLG~~~~VG~i   81 (140)
T TIGR02841        24 TKLKKLSLNNFHVYGT----LEEPV--HAVN----LEEKLKIIKKKHKNPFIIAIDACLGKLKSVGHI   81 (140)
T ss_pred             HHHHHCCCCCEEEEEC----CCCCC--CHHH----HHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEE
T ss_conf             7776427560488733----78770--1253----898999998626898189986246870132068


No 145
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=61.36  E-value=15  Score=18.25  Aligned_cols=163  Identities=14%  Similarity=0.177  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765-37999999999730144798613327100114310
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG  142 (337)
                      +...+.+.+.++.+.+.|+.++.+.|.+-+.     .+-+.++. -++..++...+.+.|   ||+-|            
T Consensus        21 ~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~-----~~Ls~eEr~~v~~~~v~~~~grvp---viaG~------------   80 (299)
T COG0329          21 SVDEEALRRLVEFLIAAGVDGLVVLGTTGES-----PTLTLEERKEVLEAVVEAVGGRVP---VIAGV------------   80 (299)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-----HHCCHHHHHHHHHHHHHHHCCCCC---EEEEC------------
T ss_conf             8399999999999998499889979866572-----216999999999999999689777---89862------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf             01365446289999999999999962897352---4667---67799999999987788577300336664354301016
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR  216 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR  216 (337)
                          |...-.++    .+.|-...+.|+|-+.   |.-.   -+|....-+...++.   +.+|+=|             
T Consensus        81 ----g~~~t~ea----i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~---~lPvilY-------------  136 (299)
T COG0329          81 ----GSNSTAEA----IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV---DLPVILY-------------  136 (299)
T ss_pred             ----CCCCHHHH----HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC---CCCEEEE-------------
T ss_conf             ----87779999----99999999709999998489788989799999999999851---8998999-------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf             75310244677774431572114788988887664089879955311458999999962499-89999346
Q gi|255764463|r  217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGL-PTFAYQVS  286 (337)
Q Consensus       217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~-P~~aYqVS  286 (337)
                                      ..|.+....=-.|......+---++-||=+..-++-+++++..... ....|.-.
T Consensus       137 ----------------N~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~~~~~~~~~~f~v~~G~  191 (299)
T COG0329         137 ----------------NIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEEIIAALGDRDFIVLSGD  191 (299)
T ss_pred             ----------------ECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             ----------------7875248999999999982789889998478899999999986487662898266


No 146
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.20  E-value=15  Score=18.23  Aligned_cols=14  Identities=50%  Similarity=0.382  Sum_probs=6.3

Q ss_pred             HHHHHHHHCCCCEE
Q ss_conf             99999996289735
Q gi|255764463|r  160 HAAVIQADAGADII  173 (337)
Q Consensus       160 k~Al~~A~AGaDiv  173 (337)
                      +.|..+.+||||.|
T Consensus       291 ~~a~~Li~aGAD~v  304 (499)
T PTZ00314        291 DQAKNLIDAGADGI  304 (499)
T ss_pred             HHHHHHHHCCCCEE
T ss_conf             99999997499879


No 147
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.80  E-value=14  Score=18.40  Aligned_cols=130  Identities=20%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      +.+...+.++-+.+-||+.+=+=-      .++.   |       .++|+.++++||++.|=+                 
T Consensus        25 ~~~~a~~i~~al~~gGi~~iEiTl------~tp~---a-------~~~I~~l~~~~p~~~vGa-----------------   71 (212)
T PRK05718         25 KLEDAVPLAKALVAGGLPVLEVTL------RTPA---A-------LEAIRAIRKEVPEALIGA-----------------   71 (212)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEC------CCCH---H-------HHHHHHHHHHCCCCEEEE-----------------
T ss_conf             999999999999987997899957------8961---9-------999999997589817965-----------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf             6544628999999999999996289735-246676779999999998778857730033666435430101675310244
Q gi|255764463|r  146 DGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL  224 (337)
Q Consensus       146 ~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~  224 (337)
                       |-|.|-+       |+-...+|||+++ +|.  +|-.|.  +.+.+ .|   ++.+                     | 
T Consensus        72 -GTV~~~e-------~~~~a~~aGA~FiVSP~--~~~~v~--~~a~~-~~---i~~i---------------------P-  113 (212)
T PRK05718         72 -GTVLNPE-------QLAQAIEAGAQFIVSPG--LTPPLL--KACQD-GP---IPLI---------------------P-  113 (212)
T ss_pred             -EEECCHH-------HHHHHHHCCCCEEECCC--CCHHHH--HHHHH-CC---CCEE---------------------C-
T ss_conf             -3313488-------99999984998998489--989999--99998-19---9765---------------------7-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCE
Q ss_conf             67777443157211478898888766408987995531145--89999999624-9989
Q gi|255764463|r  225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPT  280 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~  280 (337)
                        |        .....    |+..-.+-|||++=+=||-.+  ...++.++.-| ++|.
T Consensus       114 --G--------v~Tps----Ei~~A~~~G~~~vK~FPA~~~gG~~~lkal~~p~p~i~~  158 (212)
T PRK05718        114 --G--------VNTPS----ELMLAMELGLRTFKFFPAEASGGVKMLKALAGPFSDVRF  158 (212)
T ss_pred             --C--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf             --8--------69999----999999879998997876101799999998565899828


No 148
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221   This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=60.75  E-value=4.1  Score=22.01  Aligned_cols=81  Identities=27%  Similarity=0.398  Sum_probs=55.8

Q ss_pred             HHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             99999999888--9367633025633455445421576537999999999730---144798613327100114310013
Q gi|255764463|r   71 VEKIKQVADLG--IPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---PNIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus        71 ~~eie~~~~lG--I~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---pdl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      ..++|++.-+-  ..++++=|+  +..-|+    |=-..|+++.+|+..-=+.   |=|+|              |    
T Consensus        42 ~~~ie~L~P~~~lfdaivisPG--PC~P~e----Aa~~~Gii~~~i~h~aGkldevPILGv--------------C----   97 (212)
T TIGR00566        42 LQEIEALLPLLPLFDAIVISPG--PCTPNE----AAISMGIILEAIRHFAGKLDEVPILGV--------------C----   97 (212)
T ss_pred             HHHHHHHCCCCCCCCEEEECCC--CCCCCH----HHCCHHHHHHHHHHHCCCCCCCCCCCC--------------C----
T ss_conf             3458763113563345676586--568321----220411799998742376226760201--------------0----


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
Q ss_conf             6544628999999999999996289735246676779999999
Q gi|255764463|r  146 DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRK  188 (337)
Q Consensus       146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~  188 (337)
                                  |..||+.||+ |+|||--...|-|++..|+-
T Consensus        98 ------------LG~QA~~qA~-Gg~V~~a~~~~HGk~s~i~h  127 (212)
T TIGR00566        98 ------------LGHQALAQAF-GGDVVRANTVMHGKTSEIEH  127 (212)
T ss_pred             ------------HHHHHHHHHC-CCCEEEECCCCCCCCCCEEE
T ss_conf             ------------5568788742-87225421136873001247


No 149
>PRK08782 consensus
Probab=60.67  E-value=13  Score=18.57  Aligned_cols=71  Identities=28%  Similarity=0.477  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      -+.+...+.++-+.+-||+.+=+=-      .++          -...+|+.+++++||+.|=+                
T Consensus        26 ~~~~~a~~~~eal~~gGi~~iEiTl------rt~----------~a~~~i~~l~~~~p~~~vGa----------------   73 (219)
T PRK08782         26 DTLDQARRVADALLEGGLPAIELTL------RTP----------VAIEALAMLKRELPNIVIGA----------------   73 (219)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEC------CCC----------HHHHHHHHHHHHCCCCEEEE----------------
T ss_conf             9999999999999987998799967------993----------39999999998689947999----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf             36544628999999999999996289735-246
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADII-APS  176 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS  176 (337)
                        |-|.+-       +|+-...+|||+++ .|.
T Consensus        74 --GTV~~~-------e~~~~a~~aGA~FiVSP~   97 (219)
T PRK08782         74 --GTVLSE-------RQLRQSVDAGADFLVTPG   97 (219)
T ss_pred             --EEECCH-------HHHHHHHHCCCCEEECCC
T ss_conf             --970589-------999999984998998789


No 150
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=60.52  E-value=15  Score=18.15  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9999999999998889367633
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIF   88 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LF   88 (337)
                      ++.+...++++.++|.+.|+++
T Consensus       163 v~~i~~~l~~L~~~GAr~i~V~  184 (315)
T cd01837         163 VSNISSAIKRLYDLGARKFVVP  184 (315)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9999999999998699689982


No 151
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=60.20  E-value=15  Score=18.12  Aligned_cols=130  Identities=11%  Similarity=0.110  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCC
Q ss_conf             786328899999999999988893676330256334554454215765379999999997301-4479861332710011
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIH  138 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~h  138 (337)
                      -|...++.+.+.++++...+.|.+++-+-.+.+     .        . --.+.++++++.++ ++-++.|+ -+.||..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~G~~~~K~k~g~~-----~--------~-~d~~~v~avR~~~G~~~~l~vDa-n~~~~~~  196 (352)
T cd03328         132 GGFTSYDDDRLREQLSGWVAQGIPRVKMKIGRD-----P--------R-RDPDRVAAARRAIGPDAELFVDA-NGAYSRK  196 (352)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC-----H--------H-HHHHHHHHHHHHHCCCCEEEECC-CCCCCHH
T ss_conf             686789989999999999975998660347999-----7--------8-88999999999748895398678-7688999


Q ss_pred             CCC---------CC--CCCC-CCCHHHHHHHHHHH-------------------HHHHHHCCCCEEECCCCCCCHHHHHH
Q ss_conf             431---------00--1365-44628999999999-------------------99999628973524667677999999
Q gi|255764463|r  139 GHD---------GI--LCDG-EIVNDETIELISHA-------------------AVIQADAGADIIAPSEMMDGRVQEIR  187 (337)
Q Consensus       139 GHc---------Gi--~~~g-~IdND~Tl~~L~k~-------------------Al~~A~AGaDivAPSdMMDGrV~aIR  187 (337)
                      -==         |+  +.+- .-+|=+.+..|.++                   .-....-++|++-|-=|--|=+...|
T Consensus       197 ~Ai~~~~~l~~~~l~w~EeP~~~~d~~~~~~lr~~~~~~~pia~gE~~~~~~~~~~~i~~~a~Di~~~d~~~~GGit~~~  276 (352)
T cd03328         197 QALALARAFADEGVTWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFL  276 (352)
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCEEEECCCEECCHHHHH
T ss_conf             99999998423063738789996689999999983799976414866589899999998178785840411008699999


Q ss_pred             HHHHHCCCCCCCEECHH
Q ss_conf             99987788577300336
Q gi|255764463|r  188 KKLDSHGHINVGIMPYV  204 (337)
Q Consensus       188 ~~Ld~~g~~~~~ImsYs  204 (337)
                      +..+-+.-.+++++.+.
T Consensus       277 kia~lA~a~gv~~~~H~  293 (352)
T cd03328         277 QAAALAAAHHVDLSAHC  293 (352)
T ss_pred             HHHHHHHHCCCEECCCC
T ss_conf             99999998499045354


No 152
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=60.19  E-value=15  Score=18.12  Aligned_cols=181  Identities=19%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCCC----CCC----CCC---CCHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             799999999973014-4798613327100114310----013----654---4628999999999999996289735246
Q gi|255764463|r  109 LINEGICAIKKNIPN-IGIITDVALDPFTIHGHDG----ILC----DGE---IVNDETIELISHAAVIQADAGADIIAPS  176 (337)
Q Consensus       109 lv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHcG----i~~----~g~---IdND~Tl~~L~k~Al~~A~AGaDivAPS  176 (337)
                      .+.+|++.+|+.+++ .-++. .|-.|+|.-++.-    ++.    +.+   -.-+...+.+.+.+..+.+||||+|...
T Consensus       110 ~~~eai~~l~~~~~~~~plig-~~ggP~Tla~~l~g~~~~~~~l~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~  188 (330)
T cd03465         110 ELLEAIRLLKEELGDRVPVIG-AVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYIS  188 (330)
T ss_pred             HHHHHHHHHHHHCCCCCCEEE-ECCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999999997289874797-5565799988731848999999979999999999999999999999996399889983


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             676779999999998778857730033666435430101-6753102446777744315721147889888876640898
Q gi|255764463|r  177 EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESAD  255 (337)
Q Consensus       177 dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD  255 (337)
                      |..=|..                +||  -+.--.|+.|+ +......+.. + ....-+.-.+. ..+.+...  +-|+|
T Consensus       189 d~~a~~~----------------~ls--~~~f~~f~~p~~k~i~~~~~~~-~-~~~ilh~~g~~-~~~l~~~~--~~~~~  245 (330)
T cd03465         189 DPWASSS----------------ILS--PEDFKEFSLPYLKKVFDAIKAL-G-GPVIHHNCGDT-APILELMA--DLGAD  245 (330)
T ss_pred             CCCCCCC----------------CCC--HHHHHHHHHHHHHHHHHHHHHC-C-CCEEEECCCCH-HHHHHHHH--HCCCC
T ss_conf             5666655----------------699--9999999899999999997754-9-98367407862-87999998--65888


Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC---CEEEE
Q ss_conf             79955311458999999962499-89999346189999999988897889999999999977269---99982
Q gi|255764463|r  256 MLLVKPGLPYLDVCFRIKEKFGL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGC---DGIFT  324 (337)
Q Consensus       256 ~lMVKPa~~yLDii~~~k~~~~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGA---d~Iit  324 (337)
                      .+=+-....    +.++++.+.- -+..=++.---.++     .|  +.+++.-|+...++.+|.   .+|+.
T Consensus       246 ~~~~d~~~~----l~~~~~~~~~~~~i~Gnldp~~~l~-----~g--t~e~i~~~v~~~l~~~~~~~~g~I~~  307 (330)
T cd03465         246 VFSIDVTVD----LAEAKKKVGDKACLMGNLDPIDVLL-----NG--SPEEIKEEVKELLEKLLKGGGGYILS  307 (330)
T ss_pred             EEEECCCCC----HHHHHHHHCCCCEEEECCCHHHHHC-----CC--CHHHHHHHHHHHHHHHCCCCCCEEEC
T ss_conf             898588899----9999998099925881798789875-----79--99999999999999853799998981


No 153
>pfam01188 MR_MLE Mandelate racemase / muconate lactonizing enzyme, C-terminal domain. C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain.
Probab=60.17  E-value=15  Score=18.11  Aligned_cols=50  Identities=10%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECC
Q ss_conf             9999999999988893676330256334554454215765379999999997301-44798613
Q gi|255764463|r   68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDV  130 (337)
Q Consensus        68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DV  130 (337)
                      +.+++++++..+.|-+++-+=.+..+-.+          |   ...|++|++.+| ++.++.|.
T Consensus         2 e~~~~~a~~~~~~Gf~~~Kik~g~~~~~~----------d---~~~i~~ir~~~g~~~~l~vD~   52 (98)
T pfam01188         2 EELAAEAEEAVEAGFRAFKLKIGRGDLAD----------D---LARVAAVREAVGDDVRLRVDA   52 (98)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCHHH----------H---HHHHHHHHHHCCCCCEEEECC
T ss_conf             89999999999879987997448999999----------9---999999999759998798758


No 154
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin.  Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.22  E-value=16  Score=18.01  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=67.9

Q ss_pred             EEEECCCCCEEECCCCCCCCC-------------------------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf             666758988110488878632-------------------------8899999999999988893676330256334554
Q gi|255764463|r   44 IFLTSGEKTVESINSMPDVMR-------------------------MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN   98 (337)
Q Consensus        44 iFV~eg~~~k~~I~SMPGv~R-------------------------~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~   98 (337)
                      +-++|..+=+-+|++.|..-+                         ||.+.+.+-++.+...||+-|-=| =+|-+.   
T Consensus        37 ~HltDdq~wr~ei~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEI-D~PGH~---  112 (357)
T cd06563          37 WHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAAERGITVIPEI-DMPGHA---  112 (357)
T ss_pred             EEEECCCCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC-CCCHHH---
T ss_conf             9775488861210786226664351676656666556788777887499999999999997699897625-761167---


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--------HCCC
Q ss_conf             45421576537999999999730144798613327100114310013654462899999999999999--------6289
Q gi|255764463|r   99 TGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQA--------DAGA  170 (337)
Q Consensus        99 ~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A--------~AGa  170 (337)
                                      +++-+.+|++...++-+.........|+.+   .+.|++|.+.+.+.=--.+        --|.
T Consensus       113 ----------------~a~~~~~pel~~~~~~~~~~~~~~~~~~~L---~p~~~~ty~fl~~v~~E~~~lFp~~~~HlGG  173 (357)
T cd06563         113 ----------------LAALAAYPELGCTGGPGSVVSVQGVVSNVL---CPGKPETYTFLEDVLDEVAELFPSPYIHIGG  173 (357)
T ss_pred             ----------------HHHHHHCHHHCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             ----------------899985946408888876566788666411---5898789999999999999758976587557


Q ss_pred             CEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             735246676779999999998778857
Q gi|255764463|r  171 DIIAPSEMMDGRVQEIRKKLDSHGHIN  197 (337)
Q Consensus       171 DivAPSdMMDGrV~aIR~~Ld~~g~~~  197 (337)
                      |=|....- . .--+|++-+.++|+++
T Consensus       174 DEv~~~~W-~-~~p~i~~~~~~~~~~~  198 (357)
T cd06563         174 DEVPKGQW-E-KSPACQARMKEEGLKD  198 (357)
T ss_pred             CCCCCCHH-H-CCHHHHHHHHHCCCCC
T ss_conf             44774411-0-3879999999809999


No 155
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=59.18  E-value=11  Score=19.17  Aligned_cols=89  Identities=12%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             88999863477888773311666758988110488878632889999999999998889367633025633455445421
Q gi|255764463|r   24 NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHI  103 (337)
Q Consensus        24 ~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA  103 (337)
                      +.+|++..++.|.......++........         .++.+++.+.+.++.+..+|++.+.++++-.....+.  .+.
T Consensus        29 ~~l~~~~~~~gl~i~~~~~~~~~~~~~~~---------~r~~~~~~~~~~l~~a~~lG~~~i~~~~g~~~~~~~~--~~~   97 (201)
T pfam01261        29 EELKALLKEYGLEITSLNPSLGLLEPDER---------EREAALEALKRAIELAAALGAKVVVVHPGGALPGEDR--EEA   97 (201)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH--HHH
T ss_conf             99999999709979999778654588989---------9999999999999999973995899826887889999--999


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             57653799999999973014479
Q gi|255764463|r  104 IDPDNLINEGICAIKKNIPNIGI  126 (337)
Q Consensus       104 ~n~dglv~rAIr~IK~~fpdl~v  126 (337)
                      |   .-+.+.++.+-+...+..|
T Consensus        98 ~---~~~~~~l~~~~~~a~~~gi  117 (201)
T pfam01261        98 L---DRLAESLNELAELAEEYGV  117 (201)
T ss_pred             H---HHHHHHHHHHHHHHHHCCE
T ss_conf             9---9999999999998875573


No 156
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840    Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=58.97  E-value=16  Score=17.98  Aligned_cols=62  Identities=24%  Similarity=0.387  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCC-----CCCCC----------------CCCCCCCCCCCHHHHHHHHHHHHH----C-C
Q ss_conf             99999999988893676330256-----33455----------------445421576537999999999730----1-4
Q gi|255764463|r   70 AVEKIKQVADLGIPAIAIFPNIP-----MDLRN----------------NTGSHIIDPDNLINEGICAIKKNI----P-N  123 (337)
Q Consensus        70 L~~eie~~~~lGI~av~LFp~I~-----~~~Kd----------------~~GseA~n~dglv~rAIr~IK~~f----p-d  123 (337)
                      ..-=+..+.+|||+.|=|-|+-+     +..++                ++||.|-||.+|..| |+.+|.-.    - .
T Consensus       184 ~~TGl~y~keLGVTHVqLLP~fDf~~~de~~~~Fe~~YNWGYDP~nynvPEGSYsTdP~~P~~R-I~ELKqmi~~lH~~G  262 (655)
T TIGR02104       184 VSTGLDYLKELGVTHVQLLPVFDFASVDEEDPNFENAYNWGYDPLNYNVPEGSYSTDPYDPATR-ILELKQMIQALHENG  262 (655)
T ss_pred             CCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCC
T ss_conf             5104355543365356543411224102667787322776647665537775436788877307-678889999998668


Q ss_pred             CEEEECCCC
Q ss_conf             479861332
Q gi|255764463|r  124 IGIITDVAL  132 (337)
Q Consensus       124 l~vi~DVcL  132 (337)
                      |.||-||=.
T Consensus       263 irVImDVVY  271 (655)
T TIGR02104       263 IRVIMDVVY  271 (655)
T ss_pred             CEEEEEECC
T ss_conf             879985024


No 157
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=58.85  E-value=16  Score=17.97  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHCCCEEEE
Q ss_conf             9999999997301447986
Q gi|255764463|r  110 INEGICAIKKNIPNIGIIT  128 (337)
Q Consensus       110 v~rAIr~IK~~fpdl~vi~  128 (337)
                      +..+|+.||+.||++-||+
T Consensus       256 vi~~ik~ik~~~~~v~via  274 (486)
T PRK05567        256 VLDRVREIKAKYPDVQIIA  274 (486)
T ss_pred             HHHHHHHHHHCCCCCCEEE
T ss_conf             8999999974078773687


No 158
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=58.67  E-value=15  Score=18.27  Aligned_cols=74  Identities=26%  Similarity=0.341  Sum_probs=47.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCC
Q ss_conf             63288999999999999888936763302563345544542157653799999999973014-47986133271001143
Q gi|255764463|r   62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGH  140 (337)
Q Consensus        62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGH  140 (337)
                      +.-.+.+..++.++.+++.||+.+=+=-      .++        +  -.++|+.++++||+ +.|=+            
T Consensus        16 lR~~~~~~a~~~~~al~~~Gi~~iEVTl------~tp--------~--a~~~I~~l~~~~~~~~~iGA------------   67 (206)
T PRK09140         16 LRGITPDEALAHVGALIEAGFRAIEIPL------NSP--------D--PFDSIAALVKALGDDALIGA------------   67 (206)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEEC------CCC--------C--HHHHHHHHHHHCCCCEEEEE------------
T ss_conf             9589999999999999986998899917------997--------6--99999999996798659986------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf             100136544628999999999999996289735-246
Q gi|255764463|r  141 DGILCDGEIVNDETIELISHAAVIQADAGADII-APS  176 (337)
Q Consensus       141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS  176 (337)
                            |-|.|-+       |+-.-.+|||+++ .|.
T Consensus        68 ------GTVlt~e-------~~~~ai~aGA~FiVSP~   91 (206)
T PRK09140         68 ------GTVLSPE-------QVDRLADAGGRLIVTPN   91 (206)
T ss_pred             ------EECCCHH-------HHHHHHHCCCCEEECCC
T ss_conf             ------2046799-------99999985999999999


No 159
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=58.59  E-value=16  Score=17.94  Aligned_cols=184  Identities=20%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC
Q ss_conf             99999999999888936763302563345544542157653799999999973014479861332710011431001365
Q gi|255764463|r   68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDG  147 (337)
Q Consensus        68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g  147 (337)
                      ..-++.++...+.|..-+.+. -++       |+.  +..+.-...|+.|-+.+.          .|.+        -+|
T Consensus        29 gdP~~~a~~~~~~g~d~i~iv-DLd-------a~~--~~~~~n~~~i~~i~~~~~----------~pi~--------vgG   80 (229)
T pfam00977        29 GDPVELAKRYEEEGADELHFV-DLD-------AAK--EGRPVNLDLIEEIAEEVF----------IPVQ--------VGG   80 (229)
T ss_pred             CCHHHHHHHHHHCCCCEEEEE-ECC-------CCC--CCCHHHHHHHHHHHHHCC----------CCEE--------EEC
T ss_conf             999999999998799989999-686-------630--268106999999998669----------8789--------964


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf             44628999999999999996289735246676779999999998778857730033666435430101675310244677
Q gi|255764463|r  148 EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKG  227 (337)
Q Consensus       148 ~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~g  227 (337)
                      -|.+-+.++.+       -++|||-|.-+..---.-..+++....-|-+ ..+.|--.|.--     +       -...|
T Consensus        81 GIrs~e~~~~~-------l~~Ga~kvvigs~~~~~~~~~~~~~~~~g~q-~iv~siD~k~~~-----~-------v~~~~  140 (229)
T pfam00977        81 GIRSLEDAERL-------LSAGADKVIIGTAAVKNPELIKEAAEKFGSQ-CIVVAIDAKRDG-----K-------VAING  140 (229)
T ss_pred             CEEEHHHHHHH-------HHCCCCEEEECCCHHHCHHHHHHHHHHCCCC-CEEEEEEECCCC-----E-------EEEEC
T ss_conf             56118999999-------9769989995860430937899999980986-479999871451-----7-------99806


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf             774431572114788988887664089879955-------3114589999999624998999934618999999998889
Q gi|255764463|r  228 DKKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW  300 (337)
Q Consensus       228 dr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~  300 (337)
                      -++.-.+++.   |.+..   -.+.|+--+++-       =..|-++++..+++.+++|+.+   ||           |.
T Consensus       141 ~~~~~~~~~~---~~i~~---~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~~~pii~---~G-----------Gv  200 (229)
T pfam00977       141 WREETGIDAV---EWAKK---LEELGAGEILLTDIDRDGTLSGPDLELTRELAEAVNIPVIA---SG-----------GV  200 (229)
T ss_pred             CCCCCCCCHH---HHHHH---HHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC-----------CC
T ss_conf             4335674433---44567---76516750688775042756668999999999768998999---85-----------89


Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             788999999999997726999982
Q gi|255764463|r  301 INKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       301 ~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      -+.++.     ..++..|++.++.
T Consensus       201 ~~~~di-----~~l~~~g~~gviv  219 (229)
T pfam00977       201 GSLEDL-----KELFSEGVDGVIA  219 (229)
T ss_pred             CCHHHH-----HHHHHCCCCEEEE
T ss_conf             999999-----9999879989998


No 160
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=57.65  E-value=17  Score=17.83  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999999998778857730033666435430101-67531024-------467777443157211478898888766408
Q gi|255764463|r  182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRD-------LLKGDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p-------~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                      -+.+..+++...|...++|++=.....|.+|.-| ++. |-.-       .+......=..++........+...-.+.|
T Consensus        93 ~~~a~~~a~~~~~~~ri~vl~t~~t~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (212)
T pfam01177        93 IVEAALKALALLGAKRVGVLATYGTIVSGLYQELLAEA-GIEVVAPAIRLGIVEVLELGRIEEASVEALAAALERLAEDG  171 (212)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             47899999997189808999564244379999999975-99278524355325599928999999999999998875289


Q ss_pred             CCEEEE-CCCHHHH-HHHHHHHHHCCCCEE
Q ss_conf             987995-5311458-999999962499899
Q gi|255764463|r  254 ADMLLV-KPGLPYL-DVCFRIKEKFGLPTF  281 (337)
Q Consensus       254 AD~lMV-KPa~~yL-Dii~~~k~~~~~P~~  281 (337)
                      +|.+.. =-.||++ +.+..+...+++|+.
T Consensus       172 ~d~ivLgCT~l~~~~~~~~~l~~~~gvpvi  201 (212)
T pfam01177       172 ADAVILGCTELPLLLELIEALEPELGVPVI  201 (212)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             899998588828799999998650399198


No 161
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=57.53  E-value=17  Score=17.82  Aligned_cols=51  Identities=14%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             63288999999999999888936763302563345544542157653799999999973014
Q gi|255764463|r   62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN  123 (337)
Q Consensus        62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd  123 (337)
                      -+|-..+-+++.++.+.+.|...|.|    +    |..|-  ..|. -+...++.+++.+|.
T Consensus       152 a~R~d~efl~ev~~aa~~aGa~~i~l----~----DTvG~--~~P~-~v~~~i~~l~~~~~~  202 (530)
T PRK12344        152 GYKANPEYALATLKAAAEAGADWVVL----C----DTNGG--TLPH-EVAAIVAEVRARLPG  202 (530)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEE----C----CCCCC--CCHH-HHHHHHHHHHHHCCC
T ss_conf             43379999999999998529960023----7----88655--5889-999999999974899


No 162
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.52  E-value=17  Score=17.82  Aligned_cols=116  Identities=13%  Similarity=0.197  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCHHHCCCCCCCC--
Q ss_conf             9999999999888936763302563345544542157653799999999973014--479861332710011431001--
Q gi|255764463|r   69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALDPFTIHGHDGIL--  144 (337)
Q Consensus        69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi~--  144 (337)
                      ++.+++..+.++|...|=+.  +++  .|+.    .++-..-..-++.||+..-+  +-|- -+|+     .+|+..-  
T Consensus        17 sw~e~f~~Ak~~Gfd~IE~s--iDe--~d~~----~~~l~~~~~~~~~i~~~~~~~gl~I~-s~~~-----s~~~~~pl~   82 (284)
T PRK13210         17 SWPERLVLAKECGFDFVEMS--VDE--TDER----LARLDWSKEERLELVKAIYETGVRIP-SMCL-----SAHRRFPFG   82 (284)
T ss_pred             CHHHHHHHHHHCCCCEEEEE--CCC--CCCC----CCCCCCCHHHHHHHHHHHHHCCCEEE-EEEC-----CCCCCCCCC
T ss_conf             99999999998699889996--067--5422----25789998999999999998298356-6415-----566689999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC--CC---------CCCHHHHHHHHHHHCCCCCC
Q ss_conf             36544628999999999999996289735246--67---------67799999999987788577
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADIIAPS--EM---------MDGRVQEIRKKLDSHGHINV  198 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS--dM---------MDGrV~aIR~~Ld~~g~~~~  198 (337)
                      ..+.-.-++.++.+.+.-..-++=|+++|.-.  |.         .+--+.++|+.++-+--.+|
T Consensus        83 s~d~~~r~~~le~l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~Ae~~gV  147 (284)
T PRK13210         83 SRDEATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQAAAAQV  147 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98989999999999999999998099789968876666869889999999999999999998399


No 163
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase; InterPro: IPR010197   This entry describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Also included are enzymes with the common name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase . Members are restricted to the are low GC Gram-positive bacteria and archaea. .
Probab=56.79  E-value=17  Score=17.74  Aligned_cols=56  Identities=14%  Similarity=0.389  Sum_probs=42.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             8899999999999988893676330256334554454215765379999999997301447986133271001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      -+++..+|++|.+.+.|.+-|-|=  |.+.. +             ..-++++++.||++-++.|-- -+|+.
T Consensus       133 ~~~e~~lk~ie~~~~~g~~RIKlK--i~Pq~-~-------------~~L~~~~~~~FP~i~L~~DAN-~sy~~  188 (326)
T TIGR01928       133 AKLEEMLKEIESLKKEGYKRIKLK--ISPQI-E-------------VDLVKKVRKRFPDIPLVVDAN-ESYEL  188 (326)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEE--ECCCC-C-------------HHHHHHHHHHCCCCEEEEECC-CCCCC
T ss_conf             765789999999985698078875--16887-5-------------347677676379723897337-78885


No 164
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=56.74  E-value=8.2  Score=19.94  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=20.0

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             7677999999999877885773003
Q gi|255764463|r  178 MMDGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       178 MMDGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      -+---+..+|+.||.+||.+|.|+.
T Consensus       242 d~~~l~~~vR~~LD~~G~~~vkIv~  266 (343)
T PRK08662        242 NFRKIVEEVRWTLDLHGYSHVKIFV  266 (343)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             7799999999985455799828999


No 165
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=56.34  E-value=18  Score=17.69  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             HCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             73311666758988110488878632889999999999998889367633025633455445421576537999999999
Q gi|255764463|r   39 DLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK  118 (337)
Q Consensus        39 dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK  118 (337)
                      -+=.|+.--=|-..++.|+.--.....+.+.+.+++++..+.|.+++-+        |.             .+.+++++
T Consensus        99 ~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~e~~~~a~~~~~~Gf~~~K~--------k~-------------~~~i~avR  157 (361)
T cd03322          99 AAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGYRAIRV--------QL-------------PKLFEAVR  157 (361)
T ss_pred             HCCCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--------CH-------------HHHHHHHH
T ss_conf             8599599981897787478999638899699999999888659887874--------52-------------99999999


Q ss_pred             HHHC-CCEEEECCCCCHHHC
Q ss_conf             7301-447986133271001
Q gi|255764463|r  119 KNIP-NIGIITDVALDPFTI  137 (337)
Q Consensus       119 ~~fp-dl~vi~DVcLc~YT~  137 (337)
                      +.++ ++-+|.|.. +.||.
T Consensus       158 ~~~G~~~~l~vDan-~~~~~  176 (361)
T cd03322         158 EKFGFEFHLLHDVH-HRLTP  176 (361)
T ss_pred             HHHCCCCEEECCCC-CCCCH
T ss_conf             97299970851255-68999


No 166
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390   This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis.   Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP)  is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=56.24  E-value=13  Score=18.55  Aligned_cols=109  Identities=17%  Similarity=0.283  Sum_probs=51.8

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCH----HHHHHHHHHHHHCCCC-EEEEEECCCCCCC--CCCCCCCCCCCCHHHHHH
Q ss_conf             11666758988110488878632889----9999999999988893-6763302563345--544542157653799999
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSI----DVAVEKIKQVADLGIP-AIAIFPNIPMDLR--NNTGSHIIDPDNLINEGI  114 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Si----d~L~~eie~~~~lGI~-av~LFp~I~~~~K--d~~GseA~n~dglv~rAI  114 (337)
                      .|+-+-.-.+.++.-.+.| .|.==+    .-+.+.++++.++||. .|.|=|++-=- |  +.      ..|=-+-+.+
T Consensus       126 ~~~vlMH~~g~P~~~q~~~-~Y~dv~~e~~~fl~~~~~~~~~~Gv~~~I~LDPG~GF~-K~~t~------~~Nl~ll~~l  197 (268)
T TIGR01496       126 VPLVLMHMRGTPETMQENP-RYEDVVEEVLRFLEARAEELLAAGVAERIILDPGIGFG-KSDTV------EHNLELLKRL  197 (268)
T ss_pred             CCEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCH------HHHHHHHHHH
T ss_conf             9889876876388766677-76566899999999999999975886657871775778-88887------6789999868


Q ss_pred             HHHHHHHCC-CEEEECCCCCHHHCCCCCCCCCC---CCCCH--H---HHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999973014-47986133271001143100136---54462--8---999999999999996289735
Q gi|255764463|r  115 CAIKKNIPN-IGIITDVALDPFTIHGHDGILCD---GEIVN--D---ETIELISHAAVIQADAGADII  173 (337)
Q Consensus       115 r~IK~~fpd-l~vi~DVcLc~YT~hGHcGi~~~---g~IdN--D---~Tl~~L~k~Al~~A~AGaDiv  173 (337)
                      ..++..++= +++               |+-++   |.+.+  -   +=+.--.-.++..++.||++|
T Consensus       198 ~~f~~~lg~PlL~---------------G~SRK~fiG~~~gg~~~~~~R~~Gt~a~~~~a~~~Ga~iv  250 (268)
T TIGR01496       198 EEFKAVLGYPLLV---------------GVSRKSFIGALLGGETPPEERLEGTLAASAYAVQKGADIV  250 (268)
T ss_pred             HHHHHHHCCCCEE---------------ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9999985770212---------------0110468886516788975642688999999986798679


No 167
>PRK06845 consensus
Probab=55.68  E-value=0.79  Score=26.82  Aligned_cols=71  Identities=14%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CHHHHHHHHCCCCCHHHC---CCCEEEECCCCC---EEEC-------CCCCC--CCCCCHH--HHHHHHHHHHHCCCCEE
Q ss_conf             988999863477888773---311666758988---1104-------88878--6328899--99999999998889367
Q gi|255764463|r   23 SNWIREMVREHRLSVSDL---ILPIFLTSGEKT---VESI-------NSMPD--VMRMSID--VAVEKIKQVADLGIPAI   85 (337)
Q Consensus        23 ~~~iR~Lv~Et~Ls~~dL---I~PiFV~eg~~~---k~~I-------~SMPG--v~R~Sid--~L~~eie~~~~lGI~av   85 (337)
                      ...++.++..+.|.+++.   |+=-.+..|.+.   -..+       .+.|+  |.|.--.  ..+...-..+..|--.+
T Consensus        31 ~~a~~~al~~~gi~~~~Id~vi~G~~~~~g~~~~~~aR~~aL~aGlp~~vp~~tV~~~CaSG~~Ai~~A~~~I~sG~~dv  110 (392)
T PRK06845         31 VAAAKAALEQAGVSPEDIGHVVFGNVIQTGKDAIYLARHIGLKAGLPVGVPALTVNRLCGSGFEAIIQAAKLIYLGEAEA  110 (392)
T ss_pred             HHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             99999999871979899798999815645654334999999976999888748884430388999999999985799767


Q ss_pred             EEEECCCC
Q ss_conf             63302563
Q gi|255764463|r   86 AIFPNIPM   93 (337)
Q Consensus        86 ~LFp~I~~   93 (337)
                      .|=+++++
T Consensus       111 vlagGvEs  118 (392)
T PRK06845        111 VLAGGVES  118 (392)
T ss_pred             EEECCEEC
T ss_conf             88625520


No 168
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=55.43  E-value=18  Score=17.59  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             CCCCEEEECCCCCEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             33116667589881104888-78632889999999999998889367633-02563345544542157653799999999
Q gi|255764463|r   40 LILPIFLTSGEKTVESINSM-PDVMRMSIDVAVEKIKQVADLGIPAIAIF-PNIPMDLRNNTGSHIIDPDNLINEGICAI  117 (337)
Q Consensus        40 LI~PiFV~eg~~~k~~I~SM-PGv~R~Sid~L~~eie~~~~lGI~av~LF-p~I~~~~Kd~~GseA~n~dglv~rAIr~I  117 (337)
                      +=.|+.--=|-..++.|+.- -+.+.-+.+.+.++++++.+.|.+++-+= +.-|.   |  +.++...   -...++++
T Consensus        93 ~g~Pv~~LLGG~~r~~i~~Yas~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~p~---~--~~~~~~~---d~~~v~av  164 (341)
T cd03327          93 RGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPS---D--GHAGLRK---NVELVRAI  164 (341)
T ss_pred             CCCCHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC---C--CHHHHHH---HHHHHHHH
T ss_conf             59979999379876760267852789999999999999998399879971577887---5--0445999---99999999


Q ss_pred             HHHH-CCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             9730-1447986133271001143100136544628999999999999996289735-2466767799999999987788
Q gi|255764463|r  118 KKNI-PNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGH  195 (337)
Q Consensus       118 K~~f-pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~  195 (337)
                      ++.+ |++-++.|. -+.||.              +..+    +.+-..++.+..++ -|-..-  .+...++.-+   .
T Consensus       165 r~~~G~~~~l~vD~-n~~~~~--------------~~A~----~~~~~l~~~~~~w~EeP~~~~--d~~~~~~l~~---~  220 (341)
T cd03327         165 REAVGYDVDLMLDC-YMSWNL--------------NYAI----KMARALEKYELRWIEEPLIPD--DIEGYAELKK---A  220 (341)
T ss_pred             HHHHCCCCEEECCC-CCCCCH--------------HHHH----HHHHHHHHCCCEEEECCCCCC--CHHHHHHHHH---C
T ss_conf             99839996697035-558999--------------9999----997764104601364689967--8999999873---0


Q ss_pred             CCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH----HHHHHHHH
Q ss_conf             57730033666435430101675310244677774431572114788988887664089879955311----45899999
Q gi|255764463|r  196 INVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL----PYLDVCFR  271 (337)
Q Consensus       196 ~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~----~yLDii~~  271 (337)
                      .+++|..                         +-..|  .+....+.+      ...++|+++.|+.-    +=.=-|..
T Consensus       221 ~~ipIa~-------------------------gE~~~--~~~~~~~~i------~~~a~di~~~d~~~~GGit~~~~ia~  267 (341)
T cd03327         221 TGIPIST-------------------------GEHEY--TVYGFKRLL------EGRAVDILQPDVNWVGGITELKKIAA  267 (341)
T ss_pred             CCCCEEE-------------------------CCCCC--CHHHHHHHH------HHHCCCEEEECCCEECCHHHHHHHHH
T ss_conf             9998980-------------------------98888--999999999------86188979824353186999999999


Q ss_pred             HHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             99624998999934618999999998
Q gi|255764463|r  272 IKEKFGLPTFAYQVSGEYAMIKAASL  297 (337)
Q Consensus       272 ~k~~~~~P~~aYqVSGEYami~~a~~  297 (337)
                      +.+.+++|+.. |.++.. .++.++.
T Consensus       268 ~A~~~gi~v~p-H~~~~~-~~h~~aa  291 (341)
T cd03327         268 LAEAYGVPVVP-HASQIY-NYHFIMS  291 (341)
T ss_pred             HHHHCCCCEEE-CCHHHH-HHHHHHH
T ss_conf             99985991851-155999-9999997


No 169
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.14  E-value=17  Score=17.84  Aligned_cols=75  Identities=24%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL  144 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~  144 (337)
                      -+.+.....++.+.+-||+.+=+-      ..++.+.      ..+...++..++++|++.|=+                
T Consensus        25 ~~~e~a~~~a~aL~~gGi~~iEiT------lrt~~a~------~~i~~l~~~~~~~~p~~~iGa----------------   76 (223)
T PRK07114         25 SDIEVAKKVVKACYDGGVRAFEFT------NRGDFAH------EVFGELVKYAAKECPEMILGV----------------   76 (223)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEE------CCCCCHH------HHHHHHHHHHHHHCCCCEEEE----------------
T ss_conf             899999999999998899889995------8896589------999999999986689808965----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf             36544628999999999999996289735-246
Q gi|255764463|r  145 CDGEIVNDETIELISHAAVIQADAGADII-APS  176 (337)
Q Consensus       145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS  176 (337)
                        |-|.+-+       |+-...+|||+++ .|.
T Consensus        77 --GTVl~~~-------~~~~a~~aGA~FiVSP~  100 (223)
T PRK07114         77 --GSIVDAA-------TAALYIQLGANFVVGPL  100 (223)
T ss_pred             --ECCCCHH-------HHHHHHHCCCCEEECCC
T ss_conf             --5188999-------99999985998999999


No 170
>cd04732 HisA HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=54.90  E-value=19  Score=17.54  Aligned_cols=57  Identities=23%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             HHHHCCCCEEEEC----CC---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7664089879955----31---1458999999962499899993461899999999888978899999999999772699
Q gi|255764463|r  248 IDIQESADMLLVK----PG---LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       248 ~D~~EGAD~lMVK----Pa---~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd  320 (337)
                      .-.+.|+.-+++-    =|   .+-++++..+++.+++|+.+   ||           |.-+.++     +..++.+|++
T Consensus       154 ~~~~~g~geiilt~i~~dGt~~G~d~~ll~~i~~~~~~p~i~---~G-----------Gv~s~~d-----i~~l~~~g~~  214 (234)
T cd04732         154 RFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIA---SG-----------GVSSLDD-----IKALKELGVA  214 (234)
T ss_pred             HHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EE-----------CCCCHHH-----HHHHHHCCCC
T ss_conf             997458646998764256653568999999998657998999---81-----------8999999-----9999977998


Q ss_pred             EEE
Q ss_conf             998
Q gi|255764463|r  321 GIF  323 (337)
Q Consensus       321 ~Ii  323 (337)
                      .++
T Consensus       215 gvi  217 (234)
T cd04732         215 GVI  217 (234)
T ss_pred             EEE
T ss_conf             999


No 171
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=54.41  E-value=19  Score=17.48  Aligned_cols=39  Identities=10%  Similarity=-0.002  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             888786328899999999999988893676330256334
Q gi|255764463|r   57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDL   95 (337)
Q Consensus        57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~   95 (337)
                      +.=|+-|.+|.|.+.+.++++.+.|++-|.+=+++.+++
T Consensus        27 ~~~~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~~P~~   65 (322)
T TIGR03550        27 PGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEE   65 (322)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf             999887747999999999999977987999648868003


No 172
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=54.38  E-value=19  Score=17.48  Aligned_cols=58  Identities=28%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCEEE
Q ss_conf             3288999999999999888936763302563345544542157653799999999973--0144798
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN--IPNIGII  127 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~--fpdl~vi  127 (337)
                      +||+--.+.+.++++.+.|+..++++|--|...-...||       .....-+.+++.  .|++-+|
T Consensus        94 mry~~P~i~~~l~~l~~~g~~~iv~lPlyPqyS~sTt~S-------~~~~~~~~~~~~~~~~~i~~I  153 (159)
T cd03411          94 MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGS-------YLDEVERALKKLRPAPELRVI  153 (159)
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH-------HHHHHHHHHHHCCCCCEEEEE
T ss_conf             432799899999999854888499997987413144899-------999999999964899848982


No 173
>KOG0133 consensus
Probab=53.97  E-value=13  Score=18.58  Aligned_cols=70  Identities=11%  Similarity=0.110  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCC--HHHHHHHHHHHHHCCCCEEE
Q ss_conf             5578885856312898899986347788877331166675898811048887863288--99999999999988893676
Q gi|255764463|r    9 HKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMS--IDVAVEKIKQVADLGIPAIA   86 (337)
Q Consensus         9 ~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~S--id~L~~eie~~~~lGI~av~   86 (337)
                      .-+.+.|+.-|+--|+++-+     .+.-++.++|+||-+.+...   .+++|..|+.  .+.|...=..+.+++++-+.
T Consensus         6 ~~v~wfr~~lR~~dnpal~~-----a~~~~~~~~~v~i~d~~~~~---~~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v   77 (531)
T KOG0133           6 KSVHWFRKGLRLHDNPALLA-----AAAGKEPVRPVFILDPEEAG---SSNVGRNRWRFLLQSLEDLDQSLRELNSRLFV   77 (531)
T ss_pred             CEEEECCCCCCCCCCHHHHH-----HHCCCCCCEEEEEECHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             35775204853135733688-----75557873017975876741---34655567999999888889999985796689


No 174
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=53.93  E-value=19  Score=17.50  Aligned_cols=139  Identities=20%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             CCCEEEECCCCCEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             311666758988110488878632-8899999999999988893676330256334554454215765379999999997
Q gi|255764463|r   41 ILPIFLTSGEKTVESINSMPDVMR-MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK  119 (337)
Q Consensus        41 I~PiFV~eg~~~k~~I~SMPGv~R-~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~  119 (337)
                      +.|-+|+=-++.++++.|=-|..- -..+.|.+.++++.+.||+ |-||  |+++.+                .|...|+
T Consensus        82 ~kP~~vtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~~Ir-vSLF--IDPd~~----------------qi~~a~~  142 (234)
T cd00003          82 VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIR-VSLF--IDPDPE----------------QIEAAKE  142 (234)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEEE--ECCCHH----------------HHHHHHH
T ss_conf             49987898788878641788926654788999999999865982-7997--279878----------------9999998


Q ss_pred             HHCC-CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             3014-479861332710011431001365446289999999999999962897352466767799999999987788577
Q gi|255764463|r  120 NIPN-IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINV  198 (337)
Q Consensus       120 ~fpd-l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~  198 (337)
                      --.| +-+-|-    +|-..     .  +.-..++.++.+.+.|..-.+.|-.+=|=-|--=.-+..+.+   -.+...+
T Consensus       143 ~Gad~VElhTG----~Ya~a-----~--~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~---ip~i~Ev  208 (234)
T cd00003         143 VGADRVELHTG----PYANA-----Y--DKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAK---IPGIAEL  208 (234)
T ss_pred             HCCCEEEEECH----HHHHH-----C--CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHC---CCCCEEE
T ss_conf             49399998247----87863-----4--810399999999999999998598785478988767999855---8997288


Q ss_pred             CEECHHHHHHHHHHC
Q ss_conf             300336664354301
Q gi|255764463|r  199 GIMPYVAKFNSSFYG  213 (337)
Q Consensus       199 ~ImsYsaKfaS~fYg  213 (337)
                      .| .++----|-|||
T Consensus       209 nI-GHaiI~esl~~G  222 (234)
T cd00003         209 NI-GHAIISRALFVG  222 (234)
T ss_pred             EC-CHHHHHHHHHHH
T ss_conf             55-799999999974


No 175
>KOG2804 consensus
Probab=53.88  E-value=11  Score=18.99  Aligned_cols=28  Identities=29%  Similarity=0.309  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             9999999997301447986133271001
Q gi|255764463|r  110 INEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus       110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      ..|++...|+.||+..+|.-||=|+-|-
T Consensus        79 HarqL~QaK~~FPNvyLiVGvc~De~Th  106 (348)
T KOG2804          79 HARQLEQAKKLFPNVYLIVGVCSDELTH  106 (348)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCHHHH
T ss_conf             7999999987388737998613733233


No 176
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=53.27  E-value=20  Score=17.38  Aligned_cols=20  Identities=15%  Similarity=0.321  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEE
Q ss_conf             99999999998889367633
Q gi|255764463|r   69 VAVEKIKQVADLGIPAIAIF   88 (337)
Q Consensus        69 ~L~~eie~~~~lGI~av~LF   88 (337)
                      .+.+.++.+.+.|-.+|=|.
T Consensus        15 p~~e~i~~aa~aGfdgVEl~   34 (254)
T TIGR03234        15 PFLERFAAAAQAGFTGVEYL   34 (254)
T ss_pred             CHHHHHHHHHHHCCCEEEEC
T ss_conf             99999999998199999877


No 177
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.25  E-value=20  Score=17.36  Aligned_cols=53  Identities=17%  Similarity=0.115  Sum_probs=33.7

Q ss_pred             CCCCEEEECCC----H-HHHHHHHHHHHHCCCCEEEEE--CC--HHHHHHHHHHH-CCCCCHHH
Q ss_conf             08987995531----1-458999999962499899993--46--18999999998-88978899
Q gi|255764463|r  252 ESADMLLVKPG----L-PYLDVCFRIKEKFGLPTFAYQ--VS--GEYAMIKAASL-QGWINKND  305 (337)
Q Consensus       252 EGAD~lMVKPa----~-~yLDii~~~k~~~~~P~~aYq--VS--GEYami~~a~~-~g~~d~~~  305 (337)
                      ..+|++.+||+    + ..+.+ ..+.+..++|+..-.  -|  |-.|+++.|+. ..++|++.
T Consensus       250 ~a~d~v~~k~~~~GGit~~~~i-a~~A~~~gi~~~~g~~~es~i~~aA~~hlaaa~~~f~dldg  312 (316)
T cd03319         250 GAYDGINIKLMKTGGLTEALRI-ADLARAAGLKVMVGCMVESSLSIAAAAHLAAAKADFVDLDG  312 (316)
T ss_pred             CCCCEEEECCHHHCCHHHHHHH-HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf             9988698451440898999999-99999869949981885469999999999830899896256


No 178
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=53.20  E-value=1.3  Score=25.39  Aligned_cols=137  Identities=18%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             CCCCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             4888786328899999----999999988893676330256334554454215765379999999997301447986133
Q gi|255764463|r   56 INSMPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        56 I~SMPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      +...=|+.|-..|...    +...++++.|.-.=-+.|+ . ...|+    ...++.-+.+.+..+|-.|.+-+.+|   
T Consensus       140 vA~~~~isRe~qDe~A~~Sh~rA~~A~~~G~f~~EIvPv-~-~~~de----~~~~~~~~e~ll~~l~P~f~~~GtvT---  210 (361)
T PRK06690        140 VAERYNITREMQDEYACLSYKRTLQALEKGYIHEEILSF-N-GLLDE----SIKKEMNYERIIKRTKPAFLHNGTVT---  210 (361)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C-CCCCC----CCCCCCCHHHHHHCCCCCCCCCCCEE---
T ss_conf             999849799999999999899999998749852113766-6-51256----67899877988632898536788443---


Q ss_pred             CCHHHCCCCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEE
Q ss_conf             2710011431001365----44628999999999----99999628973524667677999999999877885--77300
Q gi|255764463|r  132 LDPFTIHGHDGILCDG----EIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIM  201 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g----~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~Im  201 (337)
                            .|.+--+.||    .+-+.+..+.|.-.    =+.++.+|+|   |+.|.-|-|.||+++|+.+|.+  |+-+.
T Consensus       211 ------AgNsS~~sDGAAavll~se~~A~~~gl~p~ariv~~a~~g~~---P~~m~~~Pi~A~~~~L~~agl~~~Did~~  281 (361)
T PRK06690        211 ------AGNSCGVNDGACAVLVMEEGQARKLGYKPVLRFVRSAVVGVD---PNLPGTGPIFAVNKLLNEMNMKVEDIDYF  281 (361)
T ss_pred             ------CCCCCCCCCHHHHHHHHCHHHHHHCCCCCEEEEEEEEEEEEC---HHHCCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             ------421673000789999857999997799806999867899748---35548256999999999759971226511


Q ss_pred             CHHHHHHHH
Q ss_conf             336664354
Q gi|255764463|r  202 PYVAKFNSS  210 (337)
Q Consensus       202 sYsaKfaS~  210 (337)
                      ----=||+.
T Consensus       282 EinEAFA~q  290 (361)
T PRK06690        282 EINEAFASK  290 (361)
T ss_pred             EEHHHHHHH
T ss_conf             202677888


No 179
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module .     This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=52.99  E-value=7.6  Score=20.17  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHCCCCC--CCEECHH
Q ss_conf             999999998778857--7300336
Q gi|255764463|r  183 VQEIRKKLDSHGHIN--VGIMPYV  204 (337)
Q Consensus       183 V~aIR~~Ld~~g~~~--~~ImsYs  204 (337)
                      +.+||..||.+||.+  ||||+=|
T Consensus       158 ~~~~Rn~l~~~gFleiETP~LtKs  181 (653)
T TIGR00459       158 TKAVRNFLDQQGFLEIETPILTKS  181 (653)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             999986664278706506777788


No 180
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.63  E-value=18  Score=17.63  Aligned_cols=71  Identities=27%  Similarity=0.257  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEECCCCCHHHCCCC
Q ss_conf             2889999999999998889367633025633455445421576537999999999730---1447986133271001143
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---PNIGIITDVALDPFTIHGH  140 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---pdl~vi~DVcLc~YT~hGH  140 (337)
                      -.+.+..++.++-+++-||+.+=+=-      .++.          --.+|+.++++|   |++.|              
T Consensus        21 ~~~~~~a~~~~~al~~gGi~~iEITl------~tp~----------a~~~i~~l~~~~~~~p~~~i--------------   70 (209)
T PRK06552         21 GESKEEALKISLAVIKGGIKAIEVTY------TNPF----------ASEVIKELVERYKDDPEVLI--------------   70 (209)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEC------CCCC----------HHHHHHHHHHHHCCCCCEEE--------------
T ss_conf             28999999999999987998899967------8975----------99999999998177998189--------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EC
Q ss_conf             100136544628999999999999996289735-24
Q gi|255764463|r  141 DGILCDGEIVNDETIELISHAAVIQADAGADII-AP  175 (337)
Q Consensus       141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-AP  175 (337)
                          .=|-|.+-+       |+-...+|||+++ .|
T Consensus        71 ----GaGTV~~~e-------~~~~a~~aGA~FiVSP   95 (209)
T PRK06552         71 ----GAGTVLDAV-------TARQAILAGAQFIVSP   95 (209)
T ss_pred             ----EEECCCCHH-------HHHHHHHCCCCEEECC
T ss_conf             ----887274899-------9999998599889769


No 181
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=52.57  E-value=20  Score=17.29  Aligned_cols=166  Identities=16%  Similarity=0.197  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEE------------ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf             999999999998889367633------------02563345544542157653799999999973014479861332710
Q gi|255764463|r   68 DVAVEKIKQVADLGIPAIAIF------------PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF  135 (337)
Q Consensus        68 d~L~~eie~~~~lGI~av~LF------------p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y  135 (337)
                      +..++.++.+.+.|.-.|-|-            |.. ++-+|+.|-.--|---|+...|++||+.+|.-.|  .|=|.|.
T Consensus       152 ~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~-N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i--~vRlSp~  228 (338)
T cd02933         152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGS-NKRTDEYGGSIENRARFLLEVVDAVAEAIGADRV--GIRLSPF  228 (338)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCC
T ss_conf             999999999998399999982244068998538532-6898978999899989999999999997298708--9996576


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf             01143100136544628999999999999996289735246676779999999998778857730033666435430101
Q gi|255764463|r  136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY  215 (337)
Q Consensus       136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF  215 (337)
                      ..  ..|+      .-+.+.+.....+..+.++|.|+|--|.   |.            +.     ...-.+...+..++
T Consensus       229 ~~--~~g~------~~~~~~~~~~~~~~~l~~~gid~~~v~~---~~------------~~-----~~~~~~~~~~~~~i  280 (338)
T cd02933         229 GT--FNDM------GDSDPEATFSYLAKELNKRGLAYLHLVE---PR------------VA-----GNPEDQPPDFLDFL  280 (338)
T ss_pred             CC--CCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEEC---CC------------CC-----CCCCCCCHHHHHHH
T ss_conf             67--6887------8887799999999999985998899726---87------------77-----77777657799999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEE-EECCCHHHHHHHHHHHHHC
Q ss_conf             67531024467777443157211478898888766408-9879-9553114589999999624
Q gi|255764463|r  216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES-ADML-LVKPGLPYLDVCFRIKEKF  276 (337)
Q Consensus       216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~l-MVKPa~~yLDii~~~k~~~  276 (337)
                      |.+++. |-...-+    ++|.       .++.-+++| ||++ |-.|-+.-=|.++++++.-
T Consensus       281 r~~~~~-pvi~~G~----i~~~-------~ae~~l~~G~~D~V~~gR~liaDP~~~~K~~~G~  331 (338)
T cd02933         281 RKAFKG-PLIAAGG----YDAE-------SAEAALADGKADLVAFGRPFIANPDLVERLKNGA  331 (338)
T ss_pred             HHHCCC-CEEEECC----CCHH-------HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCC
T ss_conf             998699-7999699----8999-------9999998799603685299987913999996399


No 182
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=52.20  E-value=21  Score=17.25  Aligned_cols=148  Identities=23%  Similarity=0.276  Sum_probs=73.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEC-CC-CCHHHCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             542157653799999999973014479861-33-2710011431--0013654462899999999999999628973524
Q gi|255764463|r  100 GSHIIDPDNLINEGICAIKKNIPNIGIITD-VA-LDPFTIHGHD--GILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       100 GseA~n~dglv~rAIr~IK~~fpdl~vi~D-Vc-Lc~YT~hGHc--Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      ..-++|.++.+.+|-+.++- |.+.+|=.| || ==|-|-.|-.  -.+...-|.--.|+---..||+.-|+|||-.|+|
T Consensus        97 arls~d~~~~i~~A~~li~l-y~~~gi~~~rilIKipaTweGi~A~~~Le~~GI~~n~TlvFs~~QA~aaa~Ag~~~IsP  175 (313)
T cd00957          97 ARLSFDTNATIAKARKLIKL-YEEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISP  175 (313)
T ss_pred             CCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEECC
T ss_conf             10214858899999999999-99719984545785588788999999999749854367764799999999769879886


Q ss_pred             CCCCCCHHHHHHHHHHH----CCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC--CCCHHHHHHHHHHHH
Q ss_conf             66767799999999987----788577300336664354301016753102446777744315--721147889888876
Q gi|255764463|r  176 SEMMDGRVQEIRKKLDS----HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYL--DPANVQEAIREASID  249 (337)
Q Consensus       176 SdMMDGrV~aIR~~Ld~----~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQm--d~~n~~eA~~e~~~D  249 (337)
                         .=|||.-.-+.-..    ..-.|-++.|     ...-|-=|+.       + | -+|-=|  -++|..|-+ +    
T Consensus       176 ---fVGRi~DWyk~~~~~~~~~~~~DPGv~~-----v~~Iy~yyk~-------~-g-~~T~Vm~ASfRn~~ei~-~----  233 (313)
T cd00957         176 ---FVGRILDWYKKHSGDKAYTAEEDPGVAS-----VKKIYNYYKK-------F-G-YKTKVMGASFRNIGQIL-A----  233 (313)
T ss_pred             ---CCCHHHHHHHHCCCCCCCCCCCCCHHHH-----HHHHHHHHHH-------C-C-CCEEEEEEECCCHHHHH-H----
T ss_conf             ---5231778988325765577777950799-----9999999997-------6-9-97078531027799999-8----


Q ss_pred             HHCCCCEEEECCCHHHHHHHHHHHHHC
Q ss_conf             640898799553114589999999624
Q gi|255764463|r  250 IQESADMLLVKPGLPYLDVCFRIKEKF  276 (337)
Q Consensus       250 ~~EGAD~lMVKPa~~yLDii~~~k~~~  276 (337)
                       --|.|.+-+-|.+     +.++++..
T Consensus       234 -LaGcD~lTisP~L-----L~~L~~~~  254 (313)
T cd00957         234 -LAGCDYLTISPAL-----LEELKNST  254 (313)
T ss_pred             -HHCCCEEECCHHH-----HHHHHCCC
T ss_conf             -7378824139999-----99987176


No 183
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=51.84  E-value=12  Score=18.72  Aligned_cols=29  Identities=28%  Similarity=0.291  Sum_probs=17.4

Q ss_pred             HHCCCCEEEC-CCCCCCHHHHHHHHHHHCC
Q ss_conf             9628973524-6676779999999998778
Q gi|255764463|r  166 ADAGADIIAP-SEMMDGRVQEIRKKLDSHG  194 (337)
Q Consensus       166 A~AGaDivAP-SdMMDGrV~aIR~~Ld~~g  194 (337)
                      .++||+-.-+ +.-.+--+.+||.+....-
T Consensus        92 ~~~Ga~g~l~K~~~~~~l~~aI~~v~~G~~  121 (204)
T PRK09958         92 ADAGANGFVSKKEGMNNIIAAIEAAKNGYC  121 (204)
T ss_pred             HHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             526863799789999999999999977997


No 184
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946   This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=51.05  E-value=11  Score=19.02  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-----CCCCC------CHHHHHHHHHHHHHCCCEE--E
Q ss_conf             863288999999999999888936763302563345544542-----15765------3799999999973014479--8
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSH-----IIDPD------NLINEGICAIKKNIPNIGI--I  127 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gse-----A~n~d------glv~rAIr~IK~~fpdl~v--i  127 (337)
                      |+..-.+|..++.+++..++  | ++|||+=-+.+ +..+..     =+|.+      |---++-..|++..|.|-+  +
T Consensus        37 Gi~e~~ld~~v~~ik~~~~~--p-~iLFPG~~~~L-s~~ADAvlFmSlLNS~d~yfivGaqi~aA~~i~~~~PrlE~Ip~  112 (212)
T TIGR01769        37 GISEDKLDQVVKKIKEITNL--P-VILFPGSVNLL-SRKADAVLFMSLLNSADTYFIVGAQIKAAVLIKKLQPRLEVIPT  112 (212)
T ss_pred             CCCHHHHHHHHHHHHHCCCC--C-EEECCCCHHHH-HHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCCE
T ss_conf             73354788999986401578--6-68827884578-88865988888653699736741515789999872788563652


Q ss_pred             ECCCCCHHH--CCCCCCCCCCCCCCHHHHHHHHHHH------HHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf             613327100--1143100136544628999999999------9999962897352466767799999999
Q gi|255764463|r  128 TDVALDPFT--IHGHDGILCDGEIVNDETIELISHA------AVIQADAGADIIAPSEMMDGRVQEIRKK  189 (337)
Q Consensus       128 ~DVcLc~YT--~hGHcGi~~~g~IdND~Tl~~L~k~------Al~~A~AGaDivAPSdMMDGrV~aIR~~  189 (337)
                      +=+|.-|=-  +=||-|-.+.=.-+|-++-..++-.      ...|-|||.=  ||.=--.-.|..+|+.
T Consensus       113 AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGSG--As~Pv~~e~i~~~k~~  180 (212)
T TIGR01769       113 AYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGSG--ASEPVSPETISLVKKK  180 (212)
T ss_pred             EEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHH
T ss_conf             2688758874044652001258998666899999999874135121310578--6667866799999985


No 185
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652   This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=50.64  E-value=22  Score=17.09  Aligned_cols=88  Identities=18%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC--------CHHHHHHHHHHHHHCC----CCEEEEECCHHHH
Q ss_conf             446777744315721147889888876640898799553--------1145899999996249----9899993461899
Q gi|255764463|r  223 DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP--------GLPYLDVCFRIKEKFG----LPTFAYQVSGEYA  290 (337)
Q Consensus       223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP--------a~~yLDii~~~k~~~~----~P~~aYqVSGEYa  290 (337)
                      |-...=|--.-.+-.|..|+-|-++   ++||-+|-|-+        |-.-.|.|+++|+...    +||++        
T Consensus       145 PVTVK~R~GWD~~h~n~~~~a~~a~---~~Ga~Av~lHGRTRaQ~Y~G~A~wd~I~~vKq~v~~~GeiPVig--------  213 (336)
T TIGR00737       145 PVTVKIRIGWDDAHINAVEAARIAE---DAGAQAVTLHGRTRAQGYEGEANWDIIARVKQAVRKEGEIPVIG--------  213 (336)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHH---HCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEC--------
T ss_conf             5166551563624488899999998---72400021110000015788760689999999971687533222--------


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE----ECHHHHHH
Q ss_conf             999999888978899999999999772699998----20189999
Q gi|255764463|r  291 MIKAASLQGWINKNDAMMESLLAFKRAGCDGIF----TYFAMEAA  331 (337)
Q Consensus       291 mi~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii----tY~A~~~a  331 (337)
                             ||=+.   ....+...+.+.|||.|.    +++.|.+-
T Consensus       214 -------NGDi~---~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~  248 (336)
T TIGR00737       214 -------NGDIF---SPEDAKAMLETTGADGVMIGRGALGNPWLF  248 (336)
T ss_pred             -------CCCCC---CHHHHHHHHHHCCCCEEEEECHHCCCCHHH
T ss_conf             -------77424---678999998637886898500222787589


No 186
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=50.55  E-value=22  Score=17.08  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHCCCCEEEEE------------ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHH
Q ss_conf             9999999998889367633------------0256334554454215765379999999997301-44798613327100
Q gi|255764463|r   70 AVEKIKQVADLGIPAIAIF------------PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFT  136 (337)
Q Consensus        70 L~~eie~~~~lGI~av~LF------------p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT  136 (337)
                      -.+..+.+.+.|-..|-|.            |.. +.-+|+.|-.--|---+.-..++++++..| ++-+..-+.--.|.
T Consensus       558 F~~AA~rA~~AGFD~IEiH~AHGYLl~qFLSPls-N~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~vRiSatDw~  636 (770)
T PRK08255        558 FVAATRRAAEAGFDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMSVRISAHDWV  636 (770)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             9999999998399989995234555887538644-677543578888777889999999998678988669998510256


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             11431001365446289999999999999962897352466
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSE  177 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd  177 (337)
                      ..|             -|++--.++|..+.++|+|+|--|.
T Consensus       637 ~gG-------------~t~edsv~la~~l~~~GvD~IdvSs  664 (770)
T PRK08255        637 EGG-------------NTPDDAVEIARAFKAAGADMIDVSS  664 (770)
T ss_pred             CCC-------------CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             899-------------9999999999999974998999578


No 187
>KOG2648 consensus
Probab=50.17  E-value=22  Score=17.04  Aligned_cols=139  Identities=12%  Similarity=0.092  Sum_probs=75.5

Q ss_pred             CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEE
Q ss_conf             589881104888786328899999999999988893676330256334554454215765379999999997301-4479
Q gi|255764463|r   48 SGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGI  126 (337)
Q Consensus        48 eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~v  126 (337)
                      ......+.++.+|..+.|   ++-+.+..+.+.|-+.|+|= .-+.-+++.            +...+.+++.++ +..|
T Consensus        19 ~~~~l~~~~~~lp~~~~f---Ei~ktv~~Ir~~~~kRVALQ-fPD~LL~~S------------~~I~~ile~~~~~k~~V   82 (453)
T KOG2648          19 REKELPEALKLLPSNYNF---EIHKTVWFIRSLGAKRVALQ-FPDGLLMYS------------CKISDILESFTGAKTFV   82 (453)
T ss_pred             HCCCCHHHHCCCCHHCCH---HHHHHHHHHHHCCCEEEEEE-CCHHHHHHH------------HHHHHHHHHHCCCCEEE
T ss_conf             163320332335220130---04667889985885079985-876776677------------99999999752663799


Q ss_pred             EECC-----CCCHHHC-C---------CCCCCCC-C-----------CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC-
Q ss_conf             8613-----3271001-1---------4310013-6-----------54462899999999999999628973524667-
Q gi|255764463|r  127 ITDV-----ALDPFTI-H---------GHDGILC-D-----------GEIVNDETIELISHAAVIQADAGADIIAPSEM-  178 (337)
Q Consensus       127 i~DV-----cLc~YT~-h---------GHcGi~~-~-----------g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM-  178 (337)
                      +.||     |.|++|- |         ||-++.- +           =.||-+.-++.|....   .+.-..|+--++- 
T Consensus        83 LaDttYGsCCVDevaA~h~~ad~lVHyG~aCLsp~~~~~~~lYVf~~i~Idl~~~~~~l~~~~---~~~~~~I~l~~~i~  159 (453)
T KOG2648          83 LGDTTYGSCCVDEVAAEHLDADALVHYGHACLSPIDRLPVVLYVFVDIPIDLDHLVKSLQRNF---PQLISQIVLLGTIQ  159 (453)
T ss_pred             EECCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCCEEEEEECCC
T ss_conf             815754652114677863588779870640038623477238996025536999999998746---65455169972200


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCEECHHHH
Q ss_conf             6779999999998778857730033666
Q gi|255764463|r  179 MDGRVQEIRKKLDSHGHINVGIMPYVAK  206 (337)
Q Consensus       179 MDGrV~aIR~~Ld~~g~~~~~ImsYsaK  206 (337)
                      --..+.++++.|...+.. .-+..=+.|
T Consensus       160 f~~~l~~~~~~L~~~~~~-~~~i~Pq~~  186 (453)
T KOG2648         160 FAHSLEALATELKEELLD-LEVILPQFK  186 (453)
T ss_pred             HHHHHHHHHHHHHHCCCC-EEEECCCCC
T ss_conf             177999999997530476-177326788


No 188
>PRK05826 pyruvate kinase; Provisional
Probab=49.51  E-value=23  Score=16.98  Aligned_cols=39  Identities=31%  Similarity=0.430  Sum_probs=34.6

Q ss_pred             HHHCCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECH
Q ss_conf             996289735246676779-999999998778857730033
Q gi|255764463|r  165 QADAGADIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPY  203 (337)
Q Consensus       165 ~A~AGaDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsY  203 (337)
                      -.+.|+|+||-|=--... |..+|+.|+++|..++.|.|=
T Consensus       182 a~~~~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~IIaK  221 (461)
T PRK05826        182 AAEQGVDYIAVSFVRNAEDVEEARRLLREAGNCDAKIIAK  221 (461)
T ss_pred             HHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             9976999997468898678999999999729998448998


No 189
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=49.09  E-value=23  Score=16.93  Aligned_cols=133  Identities=26%  Similarity=0.334  Sum_probs=75.6

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf             116667589881104888786328899999999999----98889367633025633455445421576537--999999
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQV----ADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--INEGIC  115 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~----~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--v~rAIr  115 (337)
                      .|+++.-|.++-|           |.|.+.+.++++    .++||+  .+| +-.=+|-+-..-++|.--|+  =-+...
T Consensus        16 ~~f~LiaGpcviE-----------s~d~a~~~a~~l~~~t~~lgi~--~vf-KsSfDKANRsSi~s~RGpGLeeglki~~   81 (279)
T COG2877          16 LPFVLIAGPCVIE-----------SRDLALEIAEHLKELTEKLGIP--YVF-KSSFDKANRSSIHSYRGPGLEEGLKILQ   81 (279)
T ss_pred             CCEEEEECCHHHC-----------HHHHHHHHHHHHHHHHHCCCCC--EEE-ECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             8537971442001-----------0788999999999998603985--698-6243423333211246877888999999


Q ss_pred             HHHHHHCCCEEEECCCCCHHHCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHCCC-------CEEECCCCCCCHHHHH
Q ss_conf             9997301447986133271001143100136--544628999999999999996289-------7352466767799999
Q gi|255764463|r  116 AIKKNIPNIGIITDVALDPFTIHGHDGILCD--GEIVNDETIELISHAAVIQADAGA-------DIIAPSEMMDGRVQEI  186 (337)
Q Consensus       116 ~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~--g~IdND~Tl~~L~k~Al~~A~AGa-------DivAPSdMMDGrV~aI  186 (337)
                      ++|++| .+-|+|||-     +.-+|-.+.+  +.|-..+-|-+-...-+.-|+.|+       ..++|.||-     .|
T Consensus        82 ~vK~ef-gv~ilTDVH-----e~~q~~~vA~VvDilQiPAFL~RQTDLlvA~AkTg~~vNvKKgQFLaPwdMk-----ni  150 (279)
T COG2877          82 EVKEEF-GVPILTDVH-----EPSQAQPVAEVVDVLQIPAFLCRQTDLLVAAAKTGAVVNVKKGQFLAPWDMK-----NI  150 (279)
T ss_pred             HHHHHC-CCCEEECCC-----CHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHH-----HH
T ss_conf             999871-996341358-----8665314775500221308876307999999975884761265515866755-----59


Q ss_pred             HHHHHHCCCCCCC
Q ss_conf             9999877885773
Q gi|255764463|r  187 RKKLDSHGHINVG  199 (337)
Q Consensus       187 R~~Ld~~g~~~~~  199 (337)
                      -....+.|..++.
T Consensus       151 v~K~~~~gn~~v~  163 (279)
T COG2877         151 VEKFLETGNNKVI  163 (279)
T ss_pred             HHHHHHCCCCCEE
T ss_conf             9999853898679


No 190
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.69  E-value=23  Score=16.89  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=43.0

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECC
Q ss_conf             04888786328899999999999988893676330256334554454215765379999999997301-44798613
Q gi|255764463|r   55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDV  130 (337)
Q Consensus        55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DV  130 (337)
                      +|+...-+-.-+.+...++++++.+.|.+.+-+--+.+.-.+|             ...|+++++.++ ++-++.|.
T Consensus       130 ~v~~~~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvG~~~~~~D-------------~~~v~~ir~~~g~~~~l~vDa  193 (355)
T cd03321         130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADED-------------LAVVRSIRQAVGDGVGLMVDY  193 (355)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-------------HHHHHHHHHHHCCCCEEEECC
T ss_conf             5025623678999999999999997599989997999998999-------------999999999719996597357


No 191
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.44  E-value=23  Score=16.87  Aligned_cols=79  Identities=20%  Similarity=0.190  Sum_probs=49.2

Q ss_pred             HCCCCEEEECCCCCEEECCCCCC-------CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             73311666758988110488878-------63288999999999999888936763302563345544542157653799
Q gi|255764463|r   39 DLILPIFLTSGEKTVESINSMPD-------VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLIN  111 (337)
Q Consensus        39 dLI~PiFV~eg~~~k~~I~SMPG-------v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~  111 (337)
                      -+=+|+.--=|- .++.|+.--.       .-..+.+.+.+++++..+.|.++|-+-+..+...+         .   -.
T Consensus       110 ~~g~Pv~~LLGG-~r~~vp~Y~s~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~~~~~~~~---------~---d~  176 (368)
T cd03329         110 YLGLPVHRLLGG-YREKIPAYASTMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWGPGVVR---------R---DL  176 (368)
T ss_pred             HCCCCHHHHHCC-CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHH---------H---HH
T ss_conf             849979998389-8776312688713665344589999999999999769989986589897689---------9---99


Q ss_pred             HHHHHHHHHHC-CCEEEECC
Q ss_conf             99999997301-44798613
Q gi|255764463|r  112 EGICAIKKNIP-NIGIITDV  130 (337)
Q Consensus       112 rAIr~IK~~fp-dl~vi~DV  130 (337)
                      +.++++++.++ |+.++.|.
T Consensus       177 ~~v~avReavG~d~~l~vDa  196 (368)
T cd03329         177 KACLAVREAVGPDMRLMHDG  196 (368)
T ss_pred             HHHHHHHHHHCCCEEEEECC
T ss_conf             99999999738970898768


No 192
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=48.42  E-value=14  Score=18.32  Aligned_cols=19  Identities=37%  Similarity=0.545  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHCCCCCCCEE
Q ss_conf             9999999987788577300
Q gi|255764463|r  183 VQEIRKKLDSHGHINVGIM  201 (337)
Q Consensus       183 V~aIR~~Ld~~g~~~~~Im  201 (337)
                      +..+|+.||.+||.++.|+
T Consensus       231 ~~~vR~~LD~~G~~~vkI~  249 (302)
T cd01571         231 IREVRWALDIRGYKHVKIF  249 (302)
T ss_pred             HHHHHHHHHHCCCCCCEEE
T ss_conf             9999999976698874899


No 193
>PRK10403 transcriptional regulator NarP; Provisional
Probab=48.19  E-value=24  Score=16.84  Aligned_cols=31  Identities=23%  Similarity=0.186  Sum_probs=18.1

Q ss_pred             HHCCCCE-EECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             9628973-524667677999999999877885
Q gi|255764463|r  166 ADAGADI-IAPSEMMDGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       166 A~AGaDi-vAPSdMMDGrV~aIR~~Ld~~g~~  196 (337)
                      .++||+- +.-+.-.+--+.+||..+....+.
T Consensus        99 l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~  130 (215)
T PRK10403         99 IDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF  130 (215)
T ss_pred             HHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf             74687668848999999999999998499847


No 194
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=48.18  E-value=24  Score=16.84  Aligned_cols=126  Identities=14%  Similarity=0.158  Sum_probs=67.1

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCC
Q ss_conf             1048887863288999999999999888936763302563345544542157653799999999973014-479861332
Q gi|255764463|r   54 ESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVAL  132 (337)
Q Consensus        54 ~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcL  132 (337)
                      ++|.-|...-| +...+...+..+..+||++|+.--+=++..-|....... ...-...-|+.||..+++ +.+    +.
T Consensus        71 ~~i~Hltcrd~-n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~~~-~~~~a~~Li~~i~~~~~~~f~i----gv  144 (286)
T pfam02219        71 EACMHLTCTDM-NKEELDDALEDAKALGIRNILALRGDPPKGGDHWEKPEG-GFKYALDLVRLIRQEYGDYFDI----GV  144 (286)
T ss_pred             CEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCC----CC
T ss_conf             82267464779-899999999999985988587614889887777789986-6333999999999735987775----54


Q ss_pred             CHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHCCC
Q ss_conf             710011431001365446289999999999999962897352466767-799999999987788
Q gi|255764463|r  133 DPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD-GRVQEIRKKLDSHGH  195 (337)
Q Consensus       133 c~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD-GrV~aIR~~Ld~~g~  195 (337)
                      -.| ..||..-     -+-+.-++.|.+    -.+||||.+---=-.| -.....++.+.+.|.
T Consensus       145 a~y-Pe~hp~a-----~~~~~di~~L~~----Ki~aGA~f~iTQ~~fd~~~~~~f~~~~~~~Gi  198 (286)
T pfam02219       145 AAY-PEGHPEA-----KSWQADLKYLKE----KVDAGADFIITQLFFDVDNFLRFVDRCRAAGI  198 (286)
T ss_pred             CCC-CCCCCCC-----CCHHHHHHHHHH----HHHCCCHHHHHHHEECHHHHHHHHHHHHHCCC
T ss_conf             558-8778651-----219999999999----99846105364353249999999999997499


No 195
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=48.05  E-value=24  Score=16.83  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEC
Q ss_conf             999999999977269999820
Q gi|255764463|r  305 DAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       305 ~~~~E~l~~~kRAGAd~IitY  325 (337)
                      +..-+-+..++..|||+++|=
T Consensus       438 ~I~~~K~~~I~~TGAd~VvT~  458 (491)
T PRK06259        438 ALGKRKAEMIYETGADYVITV  458 (491)
T ss_pred             HHHHHHHHHHHHHCCCEEEEE
T ss_conf             999999999998695999963


No 196
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=47.92  E-value=20  Score=17.33  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=28.6

Q ss_pred             HHHHHHHCCCC-------EEEECCCHHHH--HHH-HHHHHHCCCCEE
Q ss_conf             88876640898-------79955311458--999-999962499899
Q gi|255764463|r  245 EASIDIQESAD-------MLLVKPGLPYL--DVC-FRIKEKFGLPTF  281 (337)
Q Consensus       245 e~~~D~~EGAD-------~lMVKPa~~yL--Dii-~~~k~~~~~P~~  281 (337)
                      --.+-..||||       |+|-||.-||+  |-| +..-+.+.+||.
T Consensus        48 ~k~lk~~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv   94 (101)
T COG5561          48 IKQLKGKEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVV   94 (101)
T ss_pred             HHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             99875124634366242036158999844799999999998199589


No 197
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=47.80  E-value=2.9  Score=22.99  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=15.8

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             52466767799999999987788
Q gi|255764463|r  173 IAPSEMMDGRVQEIRKKLDSHGH  195 (337)
Q Consensus       173 vAPSdMMDGrV~aIR~~Ld~~g~  195 (337)
                      +.|+.|..|-+.|++++|+..|.
T Consensus       285 ~~p~~~~~~p~~A~~~al~~agl  307 (394)
T PRK06445        285 VPPSIMGMGPVPASRKALEKAGL  307 (394)
T ss_pred             CCHHHCCCCHHHHHHHHHHHCCC
T ss_conf             38777085889999999997399


No 198
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840   This is a family of mainly hypothetical proteins of unknown function. .
Probab=47.52  E-value=24  Score=16.77  Aligned_cols=58  Identities=19%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             CEEEECCCCCEE---ECCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             166675898811---0488878632-8899999999999988893676330256334554454215
Q gi|255764463|r   43 PIFLTSGEKTVE---SINSMPDVMR-MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHII  104 (337)
Q Consensus        43 PiFV~eg~~~k~---~I~SMPGv~R-~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~  104 (337)
                      =|=|-||-|..=   .||||-|-.| -+++.+++|++.+++.|+|=++|--   ++ -+..|-.=+
T Consensus       167 YlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvKEiilia---QD-Tt~YG~DL~  228 (475)
T TIGR01125       167 YLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVKEIILIA---QD-TTAYGVDLY  228 (475)
T ss_pred             EEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE---EE-CCCCCCEEE
T ss_conf             687005778986521362336776776888899999999843983899996---40-347764111


No 199
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=47.52  E-value=15  Score=18.18  Aligned_cols=77  Identities=19%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCC
Q ss_conf             99999998889367633025633455445421576537-9999999997301-447986133271001143100136544
Q gi|255764463|r   72 EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL-INEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEI  149 (337)
Q Consensus        72 ~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl-v~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~I  149 (337)
                      ..++++.++|-..|.=||-+.  .=|-.=...+.+.|+ ..+-|..|+..-. ||.-+      ||             +
T Consensus        99 ~~L~~l~~~GfsGV~NfPTvg--lidG~fR~~LEetGmgy~~EVEmIr~A~~~dl~T~------~y-------------v  157 (268)
T pfam09370        99 RFLDELKEMGFAGVQNFPTVG--LIDGEFRQNLEETGMGYDLEVEMIRLAHEKGLLTT------PY-------------V  157 (268)
T ss_pred             HHHHHHHHHCCCCEEECCCEE--EECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC------CE-------------E
T ss_conf             999999971977444388220--33518887788808867999999999997798333------13-------------2


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             628999999999999996289735246
Q gi|255764463|r  150 VNDETIELISHAAVIQADAGADIIAPS  176 (337)
Q Consensus       150 dND~Tl~~L~k~Al~~A~AGaDivAPS  176 (337)
                      -|       .+||..-|+||||||+|-
T Consensus       158 f~-------~e~a~~Ma~AGaDiIv~H  177 (268)
T pfam09370       158 FN-------VEEARAMAEAGADIIVAH  177 (268)
T ss_pred             CC-------HHHHHHHHHCCCCEEEEC
T ss_conf             68-------999999997499899976


No 200
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=47.26  E-value=5.5  Score=21.13  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHC-----CCEEEECCC--CCHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             79999999997301-----447986133--27100114310013--6544628999999999999996289735246676
Q gi|255764463|r  109 LINEGICAIKKNIP-----NIGIITDVA--LDPFTIHGHDGILC--DGEIVNDETIELISHAAVIQADAGADIIAPSEMM  179 (337)
Q Consensus       109 lv~rAIr~IK~~fp-----dl~vi~DVc--Lc~YT~hGHcGi~~--~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM  179 (337)
                      -+--|++.||..-+     .+.||.--|  +.-=-.-||-+++-  |=-|.-+.|=+.|+++|+.-|+.--++.-+    
T Consensus       118 tlRpaLqiI~T~~Gvk~vSSvFiM~~~~~~~nvdfC~G~~~~l~F~DCAv~~~P~a~~LAeIA~~sA~sak~f~~~----  193 (322)
T TIGR00651       118 TLRPALQIIKTLPGVKIVSSVFIMDTNETALNVDFCFGTREVLVFADCAVNVDPNAEQLAEIAIQSAKSAKSFGEI----  193 (322)
T ss_pred             HCCHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC----
T ss_conf             4042566520378850687778865888621010025744126885124502988789999999999999984689----


Q ss_pred             CCHHHHHHHHHHHCCCCCCCEECHHHHHHH
Q ss_conf             779999999998778857730033666435
Q gi|255764463|r  180 DGRVQEIRKKLDSHGHINVGIMPYVAKFNS  209 (337)
Q Consensus       180 DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS  209 (337)
                                     -..|..||||+|=++
T Consensus       194 ---------------epkVAlLSYST~gSg  208 (322)
T TIGR00651       194 ---------------EPKVALLSYSTKGSG  208 (322)
T ss_pred             ---------------CCEEEEEEECCCCCC
T ss_conf             ---------------960899830245565


No 201
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=47.22  E-value=24  Score=16.74  Aligned_cols=163  Identities=23%  Similarity=0.299  Sum_probs=86.8

Q ss_pred             CCCCCCCCC-----CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             888786328-----899999999999988893676330256334554454215765379999999997301447986133
Q gi|255764463|r   57 NSMPDVMRM-----SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        57 ~SMPGv~R~-----Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      +.|+|+|-.     ..+.+++.++++++.||+.|-|=     + |+..       +.-..+.++.+++....        
T Consensus         4 ~~~~glYlIT~~~~~~~~~~~~~~~~l~~Gv~~vQlR-----~-K~~~-------~~~~~~~a~~l~~i~~~--------   62 (210)
T PRK00043          4 MKLLGLYLITDSRDSTGDLLEVVEAALAGGVTLVQLR-----E-KGAD-------ARERLELARALKALCRR--------   62 (210)
T ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC-----C-CCCC-------HHHHHHHHHHHHHHHHH--------
T ss_conf             5308089991985345549999999998699999992-----6-9989-------99999999999999998--------


Q ss_pred             CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH
Q ss_conf             271001143100136544628999999999999996289735--246676779999999998778857730033666435
Q gi|255764463|r  132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII--APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS  209 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS  209 (337)
                            +|-. +     |.||. +    +.|..   .|+|.|  ..+||.   +..+|+.|..+.     |.        
T Consensus        63 ------~~~~-l-----iINd~-~----~lA~~---~~adGvHLgq~d~~---~~~~r~~l~~~~-----ii--------  106 (210)
T PRK00043         63 ------YGVP-L-----IVNDR-V----DLALA---VGADGVHLGQDDLP---VADARAILGPDA-----II--------  106 (210)
T ss_pred             ------HCCE-E-----EECCH-H----HHHHH---HCCCEEECCCCCCC---HHHHHHHCCCCC-----EE--------
T ss_conf             ------0995-9-----97688-9----99987---19998976988768---999997519887-----89--------


Q ss_pred             HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--------CCC-HH--HHHHHHHHHHHCCC
Q ss_conf             43010167531024467777443157211478898888766408987995--------531-14--58999999962499
Q gi|255764463|r  210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV--------KPG-LP--YLDVCFRIKEKFGL  278 (337)
Q Consensus       210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV--------KPa-~~--yLDii~~~k~~~~~  278 (337)
                                       |      ...+|..|+..    -..+|||++.+        ||+ .|  -++.++.+++.+.+
T Consensus       107 -----------------G------~S~h~~~e~~~----A~~~gaDYi~~Gpvf~T~tK~~~~~~~g~~~l~~~~~~~~i  159 (210)
T PRK00043        107 -----------------G------VSTHTLEEAAA----AAAAGADYVGVGPIFPTPTKKDAKPAVGLELLREAREAIDI  159 (210)
T ss_pred             -----------------E------EECCCHHHHHH----HHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             -----------------9------84799999999----98828983887452147988888777899999999984799


Q ss_pred             CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             899993461899999999888978899999999999772699998
Q gi|255764463|r  279 PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       279 P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                      |+.|-               |-++.+     .+..++.+||+.|-
T Consensus       160 PvvAI---------------GGI~~~-----ni~~~~~~Ga~giA  184 (210)
T PRK00043        160 PIVAI---------------GGITPE-----NAAEVLEAGADGVA  184 (210)
T ss_pred             CEEEE---------------CCCCHH-----HHHHHHHCCCCEEE
T ss_conf             98998---------------088999-----99999980999999


No 202
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=46.81  E-value=25  Score=16.70  Aligned_cols=139  Identities=23%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             CCCEEEECCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             31166675898811048887863-28899999999999988893676330256334554454215765379999999997
Q gi|255764463|r   41 ILPIFLTSGEKTVESINSMPDVM-RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK  119 (337)
Q Consensus        41 I~PiFV~eg~~~k~~I~SMPGv~-R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~  119 (337)
                      +.|-+|+=-++.++++.|=-|.. .-..+.|.+.++++.+.||+ |-||  |+++.                ..|...|+
T Consensus        85 ~kP~qvtLVPe~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIr-vSLF--iDPd~----------------~~i~~a~~  145 (240)
T PRK05265         85 IKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIR-VSLF--IDPDP----------------EQIEAAAE  145 (240)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEEE--ECCCH----------------HHHHHHHH
T ss_conf             49985998889988626788937765789999999999865981-7997--27987----------------89999998


Q ss_pred             HHCC-CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             3014-479861332710011431001365446289999999999999962897352466767799999999987788577
Q gi|255764463|r  120 NIPN-IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINV  198 (337)
Q Consensus       120 ~fpd-l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~  198 (337)
                      .-.| +-+.|-    +|-..       .+.-..++.++.+.+.|..-.+.|-.+=|=-|.-=.-+..+.+   -.+...+
T Consensus       146 ~Gad~VElhTG----~Ya~a-------~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~---ip~i~Ev  211 (240)
T PRK05265        146 VGADRIELHTG----PYADA-------KTEAEQAAELERIAEAAALAASLGLGVNAGHGLNYHNVKPIAA---IPGIEEL  211 (240)
T ss_pred             HCCCEEEEECH----HHHHH-------CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHC---CCCCEEE
T ss_conf             49399998347----87863-------5752199999999999999998698785378988777899844---8997488


Q ss_pred             CEECHHHHHHHHHHC
Q ss_conf             300336664354301
Q gi|255764463|r  199 GIMPYVAKFNSSFYG  213 (337)
Q Consensus       199 ~ImsYsaKfaS~fYg  213 (337)
                      .| .++----|-|||
T Consensus       212 sI-GHaiI~eAl~~G  225 (240)
T PRK05265        212 NI-GHAIIARALFVG  225 (240)
T ss_pred             EC-CHHHHHHHHHHH
T ss_conf             45-799999999974


No 203
>KOG3020 consensus
Probab=45.82  E-value=9.6  Score=19.49  Aligned_cols=18  Identities=6%  Similarity=0.305  Sum_probs=8.6

Q ss_pred             HHHHHHHHCCCCEEEEEE
Q ss_conf             999999988893676330
Q gi|255764463|r   72 EKIKQVADLGIPAIAIFP   89 (337)
Q Consensus        72 ~eie~~~~lGI~av~LFp   89 (337)
                      ..++.+...|+..++.-+
T Consensus        36 ~v~~~a~~~~v~~~~v~g   53 (296)
T KOG3020          36 QVLERAVQAGVSKLIVTG   53 (296)
T ss_pred             HHHHHHHHCCCEEEEEEC
T ss_conf             788888753633788717


No 204
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=45.19  E-value=26  Score=16.54  Aligned_cols=56  Identities=18%  Similarity=0.146  Sum_probs=26.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             315721147889888876640898799553114589999999624998999934618999999
Q gi|255764463|r  232 YYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKA  294 (337)
Q Consensus       232 YQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~  294 (337)
                      .|..+.+..|+-.-+..=.++|.+++ |=++     +.-++.++.++|- ..--||+-|.-.+
T Consensus       102 ~~~~~~~~~e~~~~i~~l~~~G~~vv-VG~~-----~~~~~A~~~Gl~~-vli~sg~eSI~~A  157 (169)
T pfam06506       102 VQRAYQSEEEARAAVKELKAQGIKVI-VGDG-----LVCDLAEQAGLQG-VLIYSGKESVREA  157 (169)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEE-ECCC-----HHHHHHHHCCCCE-EEEECCHHHHHHH
T ss_conf             99996688999999999998699599-8582-----8999999839957-9996678999999


No 205
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=45.13  E-value=26  Score=16.53  Aligned_cols=39  Identities=26%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             HHHHHCCCCEEEECCCHHH----HHHHHHHHHHC--CCCEEEEEC
Q ss_conf             8766408987995531145----89999999624--998999934
Q gi|255764463|r  247 SIDIQESADMLLVKPGLPY----LDVCFRIKEKF--GLPTFAYQV  285 (337)
Q Consensus       247 ~~D~~EGAD~lMVKPa~~y----LDii~~~k~~~--~~P~~aYqV  285 (337)
                      ..=++.|+|+|-|.-|--.    +|.|+.+|+.+  .+|+.|=+|
T Consensus       248 ~~Lv~aGvD~lviD~AhGhs~~v~~~ik~ik~~~~~~~~i~aGNV  292 (497)
T PRK07107        248 PALVEAGADVLCIDSSDGYSEWQKRTLDYIKEKYGDTVKVGAGNV  292 (497)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             999985999998034353529999999999986698763414521


No 206
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.09  E-value=26  Score=16.53  Aligned_cols=73  Identities=11%  Similarity=0.040  Sum_probs=47.1

Q ss_pred             EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHC
Q ss_conf             666758988110488878632889999999999998889367633025633455445421576537-9999999997301
Q gi|255764463|r   44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL-INEGICAIKKNIP  122 (337)
Q Consensus        44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl-v~rAIr~IK~~fp  122 (337)
                      .|+.-|.-+-|           |.+.+...++.+.++|++  .+|+++-+. .+.  -.+|.--|+ =.+-++.+|++| 
T Consensus        16 ~~lIAGPC~iE-----------S~e~~~~~A~~lk~~g~~--~~r~~~~K~-RTs--~~sfrG~G~egL~~L~~vk~~~-   78 (250)
T PRK13397         16 NNFIVGPCSIE-----------SYDHIRLAASSAKKLGYN--YFRGGAYKP-RTS--AASFQGLGLQGIRYLHEVCQEF-   78 (250)
T ss_pred             CCEEECCCHHC-----------CHHHHHHHHHHHHHCCCC--EEECCCCCC-CCC--CCCCCCCCHHHHHHHHHHHHHC-
T ss_conf             87885587330-----------999999999999984988--575362688-899--9776788888999999999983-


Q ss_pred             CCEEEECCCCC
Q ss_conf             44798613327
Q gi|255764463|r  123 NIGIITDVALD  133 (337)
Q Consensus       123 dl~vi~DVcLc  133 (337)
                      ++-|+|||.--
T Consensus        79 glpi~TdVh~~   89 (250)
T PRK13397         79 GLLSVSEIMSE   89 (250)
T ss_pred             CCCEEEECCCH
T ss_conf             99748847999


No 207
>PRK08234 consensus
Probab=44.95  E-value=26  Score=16.51  Aligned_cols=135  Identities=21%  Similarity=0.295  Sum_probs=67.8

Q ss_pred             CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             86328899999----999999988893676330256334554454215765-----379999999997301447986133
Q gi|255764463|r   61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-----NLINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-----glv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      |+.|-..|...    +....+++.|.=.=-++|+.-+.+|..  ....+.|     +.....+..+|-.|++ +.+    
T Consensus       176 gIsReeqD~~A~~Sh~rA~~A~~~G~f~~EIvPv~~~~~~g~--~~~~~~De~~R~~tt~e~La~L~P~F~~-Gtv----  248 (400)
T PRK08234        176 GITREAQDEFAYESQMRAKAAMETGRFDDELVPVVYPDRKGN--REVVDKDEHPRPDTTLEKLAKLPPLFEN-GTV----  248 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEEECCCCC--EEECCCCCCCCCCCCHHHHHCCCCCCCC-CCC----
T ss_conf             989999999999999999999875984111566774046787--0211577775799871011006774313-665----


Q ss_pred             CCHHHCCCCCCCCCCCC----CCHHHHHHHHHHHH----HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEE
Q ss_conf             27100114310013654----46289999999999----999962897352466767799999999987788--577300
Q gi|255764463|r  132 LDPFTIHGHDGILCDGE----IVNDETIELISHAA----VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIM  201 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g~----IdND~Tl~~L~k~A----l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~Im  201 (337)
                           +.|.|--+.||-    +-+.+..+.|.-..    +.++.+|+|   |+.|--|-|.+||++|+.+|.  .|+-+.
T Consensus       249 -----TagNsS~~sDGAAavvl~s~~~a~~~gl~p~a~i~~~~~~g~d---P~~m~~~p~~A~~~~L~ragl~~~Did~~  320 (400)
T PRK08234        249 -----TAGNASGINDGAAALLLMSAKKAKELGLKPLARYVTSAVAGVE---PAIMGIGPVFATRKALRRAGLTVDDIDLV  320 (400)
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEE
T ss_conf             -----3567885443789898856999997799942999831078618---78947276999999998749984228756


Q ss_pred             CHHHHHHHH
Q ss_conf             336664354
Q gi|255764463|r  202 PYVAKFNSS  210 (337)
Q Consensus       202 sYsaKfaS~  210 (337)
                      ----=||+.
T Consensus       321 EinEAFA~~  329 (400)
T PRK08234        321 ELNEAFAAQ  329 (400)
T ss_pred             EEEHHHHHH
T ss_conf             760777888


No 208
>pfam00128 Alpha-amylase Alpha amylase, catalytic domain. Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Probab=44.81  E-value=27  Score=16.50  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH--------HHHHHHHHHHHC--CCEEEECCCC
Q ss_conf             99999999999988893676330256334554454215765379--------999999997301--4479861332
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI--------NEGICAIKKNIP--NIGIITDVAL  132 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv--------~rAIr~IK~~fp--dl~vi~DVcL  132 (337)
                      +..+++.+..+.+|||++|-|-|..+    .+.+.+-|++-++.        ....+++-++.-  .|.||.|+..
T Consensus         3 ~~gi~~kLdyl~~LGv~~i~l~P~~~----~~~~~~GY~~~d~~~vd~~~Gt~~e~~~Lv~~~H~~Gi~VilD~V~   74 (314)
T pfam00128         3 LQGIIDKLDYLKDLGVTAIWLSPIFD----SPQSYHGYDITDYYKIDPHFGTMDDFKELIDKAHERGIKVILDLVP   74 (314)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCC----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECEEC
T ss_conf             88999824899975999899796717----9999999683567876823299999999999984669888603121


No 209
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.63  E-value=27  Score=16.48  Aligned_cols=51  Identities=22%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH---HHHHHHCCCCCCCEECHH
Q ss_conf             289999999999999962897352466767799999---999987788577300336
Q gi|255764463|r  151 NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEI---RKKLDSHGHINVGIMPYV  204 (337)
Q Consensus       151 ND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aI---R~~Ld~~g~~~~~ImsYs  204 (337)
                      .|.+.+.+.+.+..+   .+|+|+-|.+|-..+..+   .+.|.+.|..+++||-=-
T Consensus        35 ~~vp~e~~v~~a~~~---~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG   88 (119)
T cd02067          35 VDVPPEEIVEAAKEE---DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG   88 (119)
T ss_pred             CCCCHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             999999999999970---999999962202426899999999997699998599989


No 210
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=44.44  E-value=27  Score=16.46  Aligned_cols=73  Identities=23%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC----CCCCCCCCCHHHH--------HHHHHHHHHHHHHCCCCEEEC
Q ss_conf             3799999999973014479861332710011431----0013654462899--------999999999999628973524
Q gi|255764463|r  108 NLINEGICAIKKNIPNIGIITDVALDPFTIHGHD----GILCDGEIVNDET--------IELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       108 glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc----Gi~~~g~IdND~T--------l~~L~k~Al~~A~AGaDivAP  175 (337)
                      ..|..||+.+|++.++-+-+.=.|-.|+|.-++-    -.+. .-+.|.+.        .+.+.+-...|.+||||+|.-
T Consensus       112 ~~v~eai~~lr~~l~~~vpliGf~g~P~Tla~~l~g~~~~~~-~~~~~p~~~~~lL~~itd~~i~~~~~qi~aGad~i~i  190 (326)
T cd03307         112 PTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLK-WLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITI  190 (326)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             899999999999718997669870768999999757599999-9987999999999999999999999999848887886


Q ss_pred             CCCCCC
Q ss_conf             667677
Q gi|255764463|r  176 SEMMDG  181 (337)
Q Consensus       176 SdMMDG  181 (337)
                      .|..=|
T Consensus       191 fDs~a~  196 (326)
T cd03307         191 ADPTAS  196 (326)
T ss_pred             ECCCCC
T ss_conf             356565


No 211
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=44.38  E-value=27  Score=16.46  Aligned_cols=10  Identities=0%  Similarity=0.142  Sum_probs=3.8

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999973014
Q gi|255764463|r  114 ICAIKKNIPN  123 (337)
Q Consensus       114 Ir~IK~~fpd  123 (337)
                      ++.||+..|+
T Consensus        67 l~~ir~~~p~   76 (457)
T PRK11361         67 LKEMRSHETR   76 (457)
T ss_pred             HHHHHHCCCC
T ss_conf             9999820989


No 212
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=44.33  E-value=27  Score=16.45  Aligned_cols=172  Identities=17%  Similarity=0.238  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH-------HHC
Q ss_conf             2899999999999999628-973524-6676779999999998778857730033666435430101675-------310
Q gi|255764463|r  151 NDETIELISHAAVIQADAG-ADIIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA-------IST  221 (337)
Q Consensus       151 ND~Tl~~L~k~Al~~A~AG-aDivAP-SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA-------~~S  221 (337)
                      =|.|=+.+++....+++.| +.||.= -+...-.|++|++.+....=..++-....... |. +-||.--       +|-
T Consensus       288 Y~~tPee~a~~~~~f~~~g~vnivGGCCGTTPeHI~al~~~v~~~~Pr~~~~~~~~~~~-S~-~~~~~~~~~~~~~~IGE  365 (1229)
T PRK09490        288 YDETPEEMAAQIEEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRL-SG-LEPLTIDKDSLFVNVGE  365 (1229)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEE-EC-EEEEEECCCCCCEEEEE
T ss_conf             88999999999999998498005476679998999999987503898877888862466-22-04688548886046641


Q ss_pred             CCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-------HH---HCCCCEEEEECCHHHH
Q ss_conf             2446777744-31572114788988887664089879955311458999999-------96---2499899993461899
Q gi|255764463|r  222 RDLLKGDKKT-YYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRI-------KE---KFGLPTFAYQVSGEYA  290 (337)
Q Consensus       222 ~p~~~gdr~s-YQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~-------k~---~~~~P~~aYqVSGEYa  290 (337)
                      .-+-.|.|+- =.+--.|-.+++.++..-+++||++|=|-.+.+-+|-....       ..   ...+|+..  =|-+..
T Consensus       366 RiN~tGskkf~~~l~~~d~~~~l~~A~~Qv~~GA~vLDVNv~~~~~D~~~~m~~~~~~l~~~~~i~~vPl~I--DSs~~~  443 (1229)
T PRK09490        366 RTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMI--DSSKWE  443 (1229)
T ss_pred             ECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE--ECCCHH
T ss_conf             005423099999998439899999999999758978874278765346999999999984366547788468--488889


Q ss_pred             HHHHHHH----CCCCC------HHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             9999998----88978------899999999999772699998201
Q gi|255764463|r  291 MIKAASL----QGWIN------KNDAMMESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       291 mi~~a~~----~g~~d------~~~~~~E~l~~~kRAGAd~IitY~  326 (337)
                      -|.+|-+    +..+|      -+.-+++.+--.||=||-+|.-=+
T Consensus       444 viEaaLk~~~Gk~iiNSinlkeGee~~~~~~~l~kkYGAavV~L~~  489 (1229)
T PRK09490        444 VIEAGLKCIQGKGIVNSISLKEGEEKFIHHARLVRRYGAAVVVMAF  489 (1229)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf             9999998639945677421011558799987999972974899840


No 213
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=43.95  E-value=27  Score=16.41  Aligned_cols=121  Identities=18%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             HHHHHHHHHCCH-HHHHHCCC---CCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEECC-CHHHHHHHHHHHHHCC
Q ss_conf             666435430101-67531024---46777744315721147889888876-640898799553-1145899999996249
Q gi|255764463|r  204 VAKFNSSFYGPY-RDAISTRD---LLKGDKKTYYLDPANVQEAIREASID-IQESADMLLVKP-GLPYLDVCFRIKEKFG  277 (337)
Q Consensus       204 saKfaS~fYgPF-RdA~~S~p---~~~gdr~sYQmd~~n~~eA~~e~~~D-~~EGAD~lMVKP-a~~yLDii~~~k~~~~  277 (337)
                      .+=|..+|.++| ...+....   ...||.+.=..++++-.++.-.+..| ...|..+.+.=| .++|-||...+.+.+.
T Consensus       135 p~~fm~N~~~~~~~~~i~~~g~~~~~~gd~~~~~V~~~DiA~vaa~~L~~~~~~~~~~~ltGpe~lt~~eiA~~ls~vlG  214 (285)
T TIGR03649       135 PTWFMENFSEEFHVEAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLG  214 (285)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             63998750566658999748978444788775735587899999999749776897799868865799999999999879


Q ss_pred             CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             989999346189999999988897889999999999977269999820
Q gi|255764463|r  278 LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       278 ~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      .||-.-+||-|-. .....+.|+-+.-...+-.+....|.|....+|=
T Consensus       215 r~V~y~~v~~~~~-~~~l~~~G~p~~~a~~~~~~~~~~~~G~~~~~t~  261 (285)
T TIGR03649       215 RKITHVKLTEEEL-AQRLQSFGMPEDLARMLASLDTAVKNGAEVRLND  261 (285)
T ss_pred             CCEEEEECCHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9227885999999-9999874999999999999999997698778788


No 214
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=43.78  E-value=27  Score=16.40  Aligned_cols=71  Identities=21%  Similarity=0.456  Sum_probs=59.4

Q ss_pred             EECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             67589881104888786328899999999999988893676330256334554454215765379999999997301447
Q gi|255764463|r   46 LTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIG  125 (337)
Q Consensus        46 V~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~  125 (337)
                      |.-|.+.+..+.||-.-.-..++.-+.++.++.+.|.--|=+=  +| +.++.             .|+..||++. ++=
T Consensus        14 V~vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvt--v~-~~e~A-------------~A~~~Ik~~~-~vP   76 (361)
T COG0821          14 VPVGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVT--VP-DMEAA-------------EALKEIKQRL-NVP   76 (361)
T ss_pred             EEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--CC-CHHHH-------------HHHHHHHHHC-CCC
T ss_conf             7666999568886157773017999999999998189789993--69-97899-------------9999999847-998


Q ss_pred             EEECCCCC
Q ss_conf             98613327
Q gi|255764463|r  126 IITDVALD  133 (337)
Q Consensus       126 vi~DVcLc  133 (337)
                      +++|+-++
T Consensus        77 LVaDiHf~   84 (361)
T COG0821          77 LVADIHFD   84 (361)
T ss_pred             EEEEEECC
T ss_conf             79873056


No 215
>PRK09350 lysyl-tRNA synthetase; Provisional
Probab=43.63  E-value=8.3  Score=19.91  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=13.2

Q ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf             999999888936763302563345544
Q gi|255764463|r   73 KIKQVADLGIPAIAIFPNIPMDLRNNT   99 (337)
Q Consensus        73 eie~~~~lGI~av~LFp~I~~~~Kd~~   99 (337)
                      ..+.++..|...|-=|+   +.-.++.
T Consensus        80 ~~k~l~~~G~~rvfqI~---~~FR~E~  103 (325)
T PRK09350         80 HMKRLLAAGSGPIFQLC---RSFRNEE  103 (325)
T ss_pred             HHHHHHHCCCCCEEEEE---HHHCCCC
T ss_conf             99999866788558961---1322899


No 216
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=43.40  E-value=6.4  Score=20.66  Aligned_cols=44  Identities=30%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf             99962897352466767799999999987788--577300336664354
Q gi|255764463|r  164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS  210 (337)
Q Consensus       164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~  210 (337)
                      .++.+|+|   |..|.-|-|-++++.|+.+|.  .|+-+.----=||+.
T Consensus       269 ~~a~~g~~---P~~m~~gPv~A~~k~L~ragl~~~DiD~~EinEAFA~q  314 (384)
T PRK07661        269 SFAVAGVP---PEVMGIGPIAAIPKALKLAGLELSDIGLFELNEAFASQ  314 (384)
T ss_pred             CCEEEEEC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
T ss_conf             44589838---79860469999999999869986677755650667888


No 217
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=43.02  E-value=18  Score=17.57  Aligned_cols=197  Identities=22%  Similarity=0.209  Sum_probs=103.4

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH
Q ss_conf             04888786328899999999999988893676330256334554454215765379999999997301447986133271
Q gi|255764463|r   55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP  134 (337)
Q Consensus        55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~  134 (337)
                      ....+||---++.+-+.+.+..+.+-|-.++=.=+                     -+-|++|++.+ ++-||       
T Consensus        20 SCQal~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~g---------------------v~dIkai~~~v-~vPII-------   70 (229)
T COG3010          20 SCQALPGEPLDSPEIVAAMALAAEQGGAVGIRIEG---------------------VEDIKAIRAVV-DVPII-------   70 (229)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC---------------------HHHHHHHHHHC-CCCEE-------
T ss_conf             94059999876565999999999857862686120---------------------65699998617-88768-------


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH-HHHHHHHHCCCCCCCEECHHHHHHHHHHC
Q ss_conf             00114310013654462899999999999999628973524667677999-99999987788577300336664354301
Q gi|255764463|r  135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ-EIRKKLDSHGHINVGIMPYVAKFNSSFYG  213 (337)
Q Consensus       135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~-aIR~~Ld~~g~~~~~ImsYsaKfaS~fYg  213 (337)
                             ||++.+.-+-|.-+.-.-|---.+|++||||||--..---|-. .+.+.+....+.+..+|+=-+-|.-.+|.
T Consensus        71 -------GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a  143 (229)
T COG3010          71 -------GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNA  143 (229)
T ss_pred             -------EEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf             -------8880589999935566189999999779909996255687984359999997335794787325988888889


Q ss_pred             CHH--HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             016--753102446777744315721147889888876640898799553114589999999624998999934618999
Q gi|255764463|r  214 PYR--DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAM  291 (337)
Q Consensus       214 PFR--dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYam  291 (337)
                      ---  |-+|++  +.|    |-                 .+     -.+|.-|-++.++.+.+ .+.||.|         
T Consensus       144 ~~~G~D~IGTT--LsG----YT-----------------~~-----~~~~~~pDf~lvk~l~~-~~~~vIA---------  185 (229)
T COG3010         144 HKLGFDIIGTT--LSG----YT-----------------GY-----TEKPTEPDFQLVKQLSD-AGCRVIA---------  185 (229)
T ss_pred             HHCCCCEEECC--CCC----CC-----------------CC-----CCCCCCCCHHHHHHHHH-CCCEEEE---------
T ss_conf             97399678224--201----46-----------------89-----98778972899999986-7993995---------


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH----HHHHHHHH
Q ss_conf             999998889788999999999997726999982018----99999985
Q gi|255764463|r  292 IKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA----MEAARILT  335 (337)
Q Consensus       292 i~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A----~~~a~~L~  335 (337)
                            .|-+|.+...-+.    .+.||+.++-=.|    .++.+|..
T Consensus       186 ------EGr~~tP~~Ak~a----~~~Ga~aVvVGsAITRp~~It~~F~  223 (229)
T COG3010         186 ------EGRYNTPEQAKKA----IEIGADAVVVGSAITRPEEITQWFV  223 (229)
T ss_pred             ------ECCCCCHHHHHHH----HHHCCEEEEECCCCCCHHHHHHHHH
T ss_conf             ------1787999999999----9718808998743378799999999


No 218
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of  NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster.  Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=42.93  E-value=22  Score=17.05  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=24.1

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             99553114589999999624998999934
Q gi|255764463|r  257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQV  285 (337)
Q Consensus       257 lMVKPa~~yLDii~~~k~~~~~P~~aYqV  285 (337)
                      +-|+||+||-++...+.++..+|--+-+-
T Consensus        15 i~v~~GlsY~~l~~~vs~KL~L~~~~~~L   43 (80)
T cd06406          15 IQVARGLSYATLLQKISSKLELPAEHITL   43 (80)
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCHHHEEE
T ss_conf             99469995899999999886699568189


No 219
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.52  E-value=19  Score=17.47  Aligned_cols=25  Identities=8%  Similarity=0.228  Sum_probs=14.2

Q ss_pred             ECCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             3461899999999888978899999
Q gi|255764463|r  284 QVSGEYAMIKAASLQGWINKNDAMM  308 (337)
Q Consensus       284 qVSGEYami~~a~~~g~~d~~~~~~  308 (337)
                      ++++-|++.----..|.+++++++.
T Consensus       231 ~~~~g~~~a~~li~~GiLs~~eali  255 (311)
T COG3366         231 NIIAGIVLAAGLLDSGILSEKEALI  255 (311)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             8999999987775247778999999


No 220
>PRK07025 consensus
Probab=42.31  E-value=3.4  Score=22.57  Aligned_cols=29  Identities=38%  Similarity=0.459  Sum_probs=17.9

Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99962897352466767799999999987788
Q gi|255764463|r  164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH  195 (337)
Q Consensus       164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~  195 (337)
                      .++.+|+   .|+.|--|-|.+++++|+.+|.
T Consensus       278 ~~~~~g~---~P~~~~~~pv~A~~k~l~~agl  306 (393)
T PRK07025        278 AYANAGV---DPSVMGMGPVPASRRCLERAGW  306 (393)
T ss_pred             CCCEEEE---CHHHHCCCHHHHHHHHHHHCCC
T ss_conf             1327875---8788480779999999998599


No 221
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=41.91  E-value=7.5  Score=20.22  Aligned_cols=44  Identities=34%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf             999962897352466767799999999987788--57730033666435
Q gi|255764463|r  163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS  209 (337)
Q Consensus       163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS  209 (337)
                      +.++.+|+|   |..|..|-|.||+++|+.+|.  .|+-+.----=||+
T Consensus       271 ~~~a~~g~d---P~~m~~gPv~A~~k~L~~agl~~~Did~~EinEAFAa  316 (387)
T PRK07850        271 VAQALVGAE---PYYHLDGPVQSTAKVLEKAGMKIGDIDLVEINEAFAS  316 (387)
T ss_pred             EEEEEEECC---HHHCCCCHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
T ss_conf             966788748---5770706899999999985998346876786057788


No 222
>PHA00452 T3/T7-like RNA polymerase
Probab=41.82  E-value=29  Score=16.20  Aligned_cols=199  Identities=12%  Similarity=0.116  Sum_probs=88.5

Q ss_pred             CCCHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-CCCCCC--------------------HHHHHHH--HHHH
Q ss_conf             288999-999999999888936763302563345544542-157653--------------------7999999--9997
Q gi|255764463|r   64 RMSIDV-AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSH-IIDPDN--------------------LINEGIC--AIKK  119 (337)
Q Consensus        64 R~Sid~-L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gse-A~n~dg--------------------lv~rAIr--~IK~  119 (337)
                      -|.|+. +++.++++++.|-..+..||-+++...-+.-.. .-|++.                    .-|+...  .+-.
T Consensus       300 ~w~IN~~vldv~~~~~~~g~~~~~~~p~~~~~~~P~~P~~~~~~~~~~~~wk~~~~~~~~~~~~~~s~r~~~~~~l~~A~  379 (816)
T PHA00452        300 AWRINKKVLAVANEVVEWKNCSVGDIPAIPREELPPKPEDIDTEEEAFKAWKKAAAAIYRKEKERRSRRWRTEFMLNVAN  379 (816)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             81338889999999997489876778898776799799997679999999999999999999999999999999999999


Q ss_pred             HHCC---CEEE--ECCC-----CCHHHCCCCC---CCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf             3014---4798--6133-----2710011431---001--3654462899999999999999628973524667677999
Q gi|255764463|r  120 NIPN---IGII--TDVA-----LDPFTIHGHD---GIL--CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ  184 (337)
Q Consensus       120 ~fpd---l~vi--~DVc-----Lc~YT~hGHc---Gi~--~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~  184 (337)
                      .|-+   +..-  .|-=     .-.++..|.|   |++  .+|+..+..-+.-|.-.--..  .|.|=+    -+|.||.
T Consensus       380 ~f~~~~~~y~p~~~DfRGR~Yp~~~l~~qg~d~~r~ll~f~~~~~l~~~g~~wl~i~~an~--~g~dk~----~~~~r~~  453 (816)
T PHA00452        380 KFADFKAIYFPYNMDSRGRVYAVSMLNPQGNDMGKALLRFAEGKPLGEDGLYWLKVHGANC--YGVDKV----TFDDRVA  453 (816)
T ss_pred             HHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC--CCCCCC----CHHHHHH
T ss_conf             8548986787666257875067757798885788899986568817830799999999873--799767----9999999


Q ss_pred             HHHHHHHHCCC-CCCCEECHHHHHHHHHHCCHH---------HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999987788-577300336664354301016---------75310244677774431572114788988887664089
Q gi|255764463|r  185 EIRKKLDSHGH-INVGIMPYVAKFNSSFYGPYR---------DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA  254 (337)
Q Consensus       185 aIR~~Ld~~g~-~~~~ImsYsaKfaS~fYgPFR---------dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA  254 (337)
                      -..+.+|.--- .+-| +.+  .+...-=-||.         +|..+...| -.+=--++|-.....-...+..--.+||
T Consensus       454 w~~~~~~~i~~~a~~P-l~~--~~W~~ad~P~q~LA~c~E~~~~~~~~~~~-~s~lpv~~DgsCnGlQH~aal~rD~~ga  529 (816)
T PHA00452        454 WVEENHDLIRAIAEDP-LNN--TWWAEADSPFCFLAFCFEYAAVVHHGTAY-TSGLPVAMDGTCSGLQHFSAMLRDEVGG  529 (816)
T ss_pred             HHHHHHHHHHHHHHCC-CCC--HHHHCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCHHHHHHHHHCCHHHH
T ss_conf             9998899999998585-667--36550787899999999999999768724-3277411078872999999972586321


Q ss_pred             CEEEE----CCCHHHHHHHHHH
Q ss_conf             87995----5311458999999
Q gi|255764463|r  255 DMLLV----KPGLPYLDVCFRI  272 (337)
Q Consensus       255 D~lMV----KPa~~yLDii~~~  272 (337)
                      -.|=+    ||+=-|-.|...+
T Consensus       530 ~~VNL~p~d~p~DvY~~Va~~v  551 (816)
T PHA00452        530 AAVNLLPSDKPQDIYKIVAEKV  551 (816)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHH
T ss_conf             4523678888651899999999


No 223
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=41.73  E-value=29  Score=16.19  Aligned_cols=90  Identities=21%  Similarity=0.315  Sum_probs=57.5

Q ss_pred             CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHH--HHHHHHCCCCEEEEEECCCCC----CC----------------C
Q ss_conf             3311666758988110488878632889999999--999998889367633025633----45----------------5
Q gi|255764463|r   40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK--IKQVADLGIPAIAIFPNIPMD----LR----------------N   97 (337)
Q Consensus        40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~e--ie~~~~lGI~av~LFp~I~~~----~K----------------d   97 (337)
                      .||=+-|.+=.   .+-++.|.-.|=+.-.+.+.  +..+.+|||++|=|-|+-.-.    ++                -
T Consensus       173 vIYE~HVr~fT---~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFA  249 (697)
T COG1523         173 VIYEAHVRDFT---QLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFA  249 (697)
T ss_pred             EEEEEEECCCC---CCCCCCCHHHCCCEEHHCCCCHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             89984105566---679999532054431113623778998709766997252587315445665663555777512557


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHH----C-CCEEEECCCCCH
Q ss_conf             445421576537999999999730----1-447986133271
Q gi|255764463|r   98 NTGSHIIDPDNLINEGICAIKKNI----P-NIGIITDVALDP  134 (337)
Q Consensus        98 ~~GseA~n~dglv~rAIr~IK~~f----p-dl~vi~DVcLc~  134 (337)
                      +.|..|.+|+ + +..|++.|+-+    . .|.||-||-.-.
T Consensus       250 p~~~Yss~p~-p-~~~i~EfK~mV~~lHkaGI~VILDVVfNH  289 (697)
T COG1523         250 PEGRYASNPE-P-ATRIKEFKDMVKALHKAGIEVILDVVFNH  289 (697)
T ss_pred             CCCCCCCCCC-C-CHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             7842247997-4-11779999999999975998999985147


No 224
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=41.51  E-value=30  Score=16.17  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      ..+++..++-++++.+.    +-.+ .|        |.+-+-..|  .+.|+.||+.||+.-|++|.=+.-         
T Consensus         9 ~~~~~~A~~l~~~l~~~----v~~i-Kv--------G~~L~~~~G--~~~v~~lk~~~p~~~IflDlK~~D---------   64 (202)
T cd04726           9 LLDLEEALELAKKVPDG----VDII-EA--------GTPLIKSEG--MEAVRALREAFPDKIIVADLKTAD---------   64 (202)
T ss_pred             CCCHHHHHHHHHHHCCC----CCEE-EE--------CHHHHHHHC--HHHHHHHHHHCCCCEEEEEEEECC---------
T ss_conf             99999999999970354----8799-98--------959999768--999999998789997999865336---------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             13654462899999999999999628973524
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                             ...|+   ++   .-+++|||++-=
T Consensus        65 -------i~~tv---a~---~~~~~Gad~~tv   83 (202)
T cd04726          65 -------AGALE---AE---MAFKAGADIVTV   83 (202)
T ss_pred             -------CHHHH---HH---HHHHHCCCEEEE
T ss_conf             -------16799---99---999707988999


No 225
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=41.48  E-value=30  Score=16.16  Aligned_cols=71  Identities=21%  Similarity=0.364  Sum_probs=51.7

Q ss_pred             CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC----C
Q ss_conf             589881104888786328899999999999988893676330256334554454215765379999999997301----4
Q gi|255764463|r   48 SGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP----N  123 (337)
Q Consensus        48 eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp----d  123 (337)
                      =|-+.+..|.||-...-..++.-++++.++.+.|.--|=+=  +| ..++.             ++++.||+..-    +
T Consensus        21 iGg~~Pi~vQSMt~t~T~d~~atv~Qi~~l~~aGceiVRvt--vp-~~~~a-------------~al~~I~~~l~~~~~~   84 (613)
T PRK02048         21 LGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLT--TQ-GVREA-------------ENLMNINIGLRSQGYM   84 (613)
T ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHHHHCCCC
T ss_conf             57999676664699986158999999999998599989988--89-99999-------------8499999998627998


Q ss_pred             CEEEECCCCCH
Q ss_conf             47986133271
Q gi|255764463|r  124 IGIITDVALDP  134 (337)
Q Consensus       124 l~vi~DVcLc~  134 (337)
                      +=+++|+-+++
T Consensus        85 iPlvADIHF~~   95 (613)
T PRK02048         85 VPLVADVHFNP   95 (613)
T ss_pred             CCEEEECCCCH
T ss_conf             98797327887


No 226
>pfam12010 DUF3502 Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.
Probab=41.48  E-value=18  Score=17.67  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             ECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC
Q ss_conf             346189999999988897889999999999977269999820189999998509
Q gi|255764463|r  284 QVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS  337 (337)
Q Consensus       284 qVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~~~  337 (337)
                      +|..||..   +-..|..|.+..+-|-.--+|-||-|-|+.-.-+++-.||..+
T Consensus        89 ~V~~~y~~---~L~tG~vDpe~~l~~~~~kLk~AGidkV~~E~QkQ~D~~~a~~  139 (140)
T pfam12010        89 NVMSEFEP---ALYTGSVDPEEYLPKLNQKLKAAGIDKVQKEMQKQLDEWKAKN  139 (140)
T ss_pred             HHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999---9876586889999999999998358999999999999999835


No 227
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=41.36  E-value=29  Score=16.29  Aligned_cols=20  Identities=35%  Similarity=0.356  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999999997726999982
Q gi|255764463|r  305 DAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       305 ~~~~E~l~~~kRAGAd~Iit  324 (337)
                      +....-|.+.||||||.|+|
T Consensus       209 ~~~~~kL~~~ke~gad~ivt  228 (293)
T COG2048         209 KLAKRKLQSAKEAGADCIVT  228 (293)
T ss_pred             HHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999888659887984


No 228
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=41.26  E-value=27  Score=16.40  Aligned_cols=81  Identities=27%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             88999999999999888936763302563345--------5445421576537999999999730144798613327100
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLR--------NNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~K--------d~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      ||.+.+-+++++..+.+..-. .++...+.+|        |+.|+..|+.  +   -+..||+.-.++.+          
T Consensus       120 ~~~~~lee~~~~~~~~~l~i~-d~~k~~~~l~~a~VlYl~DNaGEi~FD~--v---lie~ik~~~~~vv~----------  183 (285)
T COG1578         120 FSPFDLEEEVEKLLDAELYID-DSPKLLELLKNASVLYLTDNAGEIVFDK--V---LIEVIKELGKKVVV----------  183 (285)
T ss_pred             CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHCCCCEEEEECCCCCHHHHH--H---HHHHHHHCCCCEEE----------
T ss_conf             777679999998623764424-6588988851584899925874078889--9---99999845884599----------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             11431001365446289999999999999962897352
Q gi|255764463|r  137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA  174 (337)
Q Consensus       137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA  174 (337)
                            +++.|-|.||+|++-.       .++|.|-+|
T Consensus       184 ------vVrg~PIlnDaT~EDa-------k~~~i~~i~  208 (285)
T COG1578         184 ------VVRGGPILNDATMEDA-------KEAGIDEIA  208 (285)
T ss_pred             ------EECCCCEECHHHHHHH-------HHCCCCHHH
T ss_conf             ------9768753423108889-------871922010


No 229
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=41.13  E-value=25  Score=16.72  Aligned_cols=134  Identities=19%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEECCCCC
Q ss_conf             86328899999----999999988893676330256334554454215765379999999997301---44798613327
Q gi|255764463|r   61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP---NIGIITDVALD  133 (337)
Q Consensus        61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp---dl~vi~DVcLc  133 (337)
                      |+.|--.|...    +...++++.|.-.=.+.|+.. -.+|+    ...++ .....+..+|-.|.   +-+.+|     
T Consensus       190 gIsReeqD~~A~~Sh~rA~~A~~~G~f~~eIvPv~~-~~~De----~~R~~-tt~e~La~LkPvF~~~~~~GtvT-----  258 (428)
T PRK09268        190 GISREAQDELAAASHQNLAAAYERGFFDDLITPFLG-LTRDN----NLRPD-SSLEKLAKLKPVFGKKGGDGTMT-----  258 (428)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC-CCCCC----CCCCC-CCHHHHHCCCCCCCCCCCCCCEE-----
T ss_conf             989999999999999999999982986221076421-15889----85999-98667633576333557888666-----


Q ss_pred             HHHCCCCCCCCCCC----CCCHHHHHHHHHHHH----HHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCC--CCCCEEC
Q ss_conf             10011431001365----446289999999999----99996289735-2466767799999999987788--5773003
Q gi|255764463|r  134 PFTIHGHDGILCDG----EIVNDETIELISHAA----VIQADAGADII-APSEMMDGRVQEIRKKLDSHGH--INVGIMP  202 (337)
Q Consensus       134 ~YT~hGHcGi~~~g----~IdND~Tl~~L~k~A----l~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~--~~~~Ims  202 (337)
                          .|.+.-+.||    .+-+.+..+.+.-.-    +.++.+|+|.+ .|..|+-|-|.||+++|+.+|.  .|+-+.-
T Consensus       259 ----AgNss~~~DGAAa~ll~s~~~a~~~gl~pla~iv~~~~~gvd~~~~p~~~~~~Pv~A~~~~L~ragl~~~Did~~E  334 (428)
T PRK09268        259 ----AGNSTPLTDGASVVLLASEEWAKAHGLPVLAYLVDAETAAVDFVHGKEGLLMAPTYAVPRLLARNGLTLQDFDFYE  334 (428)
T ss_pred             ----CCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHCCCCHHHCCHHH
T ss_conf             ----6336865676000000269999976998509999889963676668502014689999999998599979847998


Q ss_pred             HHHHHHH
Q ss_conf             3666435
Q gi|255764463|r  203 YVAKFNS  209 (337)
Q Consensus       203 YsaKfaS  209 (337)
                      ---=||+
T Consensus       335 inEAFAa  341 (428)
T PRK09268        335 IHEAFAS  341 (428)
T ss_pred             HHHHHHH
T ss_conf             7466788


No 230
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.10  E-value=30  Score=16.13  Aligned_cols=94  Identities=20%  Similarity=0.241  Sum_probs=56.8

Q ss_pred             HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHH
Q ss_conf             4301016753102446777744315721147889888876640898799553114589999999624-998999934618
Q gi|255764463|r  210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGE  288 (337)
Q Consensus       210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGE  288 (337)
                      .|+|...+|+..........+.-+.-+.|..||...+    +.|||++|.-- |.. +-++++-+.. ..|-..--+|| 
T Consensus       162 ~~~g~~~~av~~~r~~~~~~~kIeVEv~tl~ea~~a~----~~g~D~I~LDn-~~~-~~~~~~v~~~~~~~~v~ieaSG-  234 (269)
T cd01568         162 AAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEAL----EAGADIIMLDN-MSP-EELKEAVKLLKGLPRVLLEASG-  234 (269)
T ss_pred             HHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH----HCCCCEEEECC-CCH-HHHHHHHHHHCCCCCEEEEEEC-
T ss_conf             6738999999999986899843999949899999999----76999999879-899-9999999984779985999989-


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             99999999888978899999999999772699998201
Q gi|255764463|r  289 YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       289 Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~  326 (337)
                                 -+++     +.+..+...|.|+|.|=.
T Consensus       235 -----------gI~~-----~ni~~ya~~GvD~Is~g~  256 (269)
T cd01568         235 -----------GITL-----ENIRAYAETGVDVISTGA  256 (269)
T ss_pred             -----------CCCH-----HHHHHHHHCCCCEEEECH
T ss_conf             -----------9999-----999999975999999084


No 231
>PRK13435 response regulator; Provisional
Probab=41.00  E-value=22  Score=16.99  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEE---CC-CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf             11478898888766408987995---53-11458999999962499899993461899999999888978
Q gi|255764463|r  237 ANVQEAIREASIDIQESADMLLV---KP-GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN  302 (337)
Q Consensus       237 ~n~~eA~~e~~~D~~EGAD~lMV---KP-a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d  302 (337)
                      .|..||+..+.   .+--|.+.+   -| |+.=+++++++++..++|+..---+.|+   -.+...|+.|
T Consensus        33 ~~~~eAl~~~~---~~~PDlvllDi~LpdG~~G~e~~r~l~~~~~ipvI~lTa~~d~---~~~~~aGA~d   96 (141)
T PRK13435         33 STSEQALALGR---RAQPDVALVDIRLADGPTGVEVARRLSIDGGVEVIFMTANPER---VGHDFAGALG   96 (141)
T ss_pred             CCHHHHHHHHH---CCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHCCCCC
T ss_conf             99999999976---5999899978878999989999999987599838999777998---6013459985


No 232
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=40.97  E-value=7.4  Score=20.25  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             HHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECHHHHHHHH
Q ss_conf             99628973524667677999999999877885--77300336664354
Q gi|255764463|r  165 QADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPYVAKFNSS  210 (337)
Q Consensus       165 ~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsYsaKfaS~  210 (337)
                      ++.+|+|   |..|.-|-|.+|+++|+.+|.+  |+-+.----=||+.
T Consensus       285 ~~~~g~~---P~~m~~gPv~A~~k~L~~agl~~~Did~~EinEAFA~~  329 (399)
T PRK09052        285 FAVAGVP---PEIMGIGPIEAIPAALKQAGLKQDDLDWIELNEAFAAQ  329 (399)
T ss_pred             EEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEHHHHHHH
T ss_conf             4799828---78857689999999999839986677878860343888


No 233
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=40.86  E-value=30  Score=16.10  Aligned_cols=149  Identities=20%  Similarity=0.274  Sum_probs=83.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             34554454215765379999999997301447986133271001143100136544628999999999999996289735
Q gi|255764463|r   94 DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII  173 (337)
Q Consensus        94 ~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv  173 (337)
                      -.|=..|+.++-|+..+.+-|+..|+.  ++.+.+.=-|-++--+       .|+      ++.+.+.   -.+-|.|+|
T Consensus        41 ~~K~g~gt~~l~p~~~l~eKI~l~~~~--~V~v~~GGtlfE~a~~-------~~~------~d~y~~~---~~~lGf~~i  102 (245)
T pfam02679        41 FLKFGWGTSALMPEDILKEKIDLAHEH--GVYVYTGGTLFEIAIL-------QGK------FDEYLRE---CKELGFDAI  102 (245)
T ss_pred             EEEECCCEEEECCHHHHHHHHHHHHHC--CCEEECCCHHHHHHHH-------CCC------HHHHHHH---HHHCCCCEE
T ss_conf             899768765017889999999999985--9948479699999997-------383------9999999---998699889


Q ss_pred             ECCCCC-----CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             246676-----779999999998778857730033666435430101675310244677774431572114788988887
Q gi|255764463|r  174 APSEMM-----DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI  248 (337)
Q Consensus       174 APSdMM-----DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~  248 (337)
                      -=||=.     |-+...|+++ -++||+=.   |=                     + |.|..=--.+.+..+-++.+..
T Consensus       103 EiSdg~i~i~~~~~~~~I~~~-~~~G~~v~---~E---------------------v-G~K~~~~~~~~~~~~~I~~~~~  156 (245)
T pfam02679       103 EISDGSIELPEEERLRLIRKA-KKAGFKVL---SE---------------------V-GKKDPEADSELTPDELIEQIER  156 (245)
T ss_pred             EECCCCCCCCHHHHHHHHHHH-HHCCCEEE---EE---------------------E-CCCCCCCCCCCCHHHHHHHHHH
T ss_conf             956884468989999999999-97899796---64---------------------1-5467543456799999999999


Q ss_pred             HHHCCCCEEEECCC------------HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             66408987995531------------145899999996249989999346
Q gi|255764463|r  249 DIQESADMLLVKPG------------LPYLDVCFRIKEKFGLPTFAYQVS  286 (337)
Q Consensus       249 D~~EGAD~lMVKPa------------~~yLDii~~~k~~~~~P~~aYqVS  286 (337)
                      |.+-||++||+.--            ..--|+|.++-+...+--..+...
T Consensus       157 ~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~I~~~~~~~~iifEAp  206 (245)
T pfam02679       157 DLEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAP  206 (245)
T ss_pred             HHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHCEEEECC
T ss_conf             99769828998510148756508898871889999997388300899789


No 234
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=40.54  E-value=31  Score=16.07  Aligned_cols=11  Identities=9%  Similarity=-0.103  Sum_probs=4.6

Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999973014
Q gi|255764463|r  113 GICAIKKNIPN  123 (337)
Q Consensus       113 AIr~IK~~fpd  123 (337)
                      .++.||+.+|+
T Consensus        65 ~l~~l~~~~p~   75 (202)
T PRK09390         65 LLRRLKARGSP   75 (202)
T ss_pred             HHHHHHHCCCC
T ss_conf             99998722899


No 235
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=40.53  E-value=9.5  Score=19.51  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=64.6

Q ss_pred             CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-C----HHHHHHHHHHHHHC---CCEEEE
Q ss_conf             86328899999----999999988893676330256334554454215765-3----79999999997301---447986
Q gi|255764463|r   61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-N----LINEGICAIKKNIP---NIGIIT  128 (337)
Q Consensus        61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-g----lv~rAIr~IK~~fp---dl~vi~  128 (337)
                      |+.|--.|..-    +....+++.|.-.=-++|+.-+.+|...  ..++.| +    .-...+.++|-.|.   .-+.+ 
T Consensus       173 gIsRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvpv~v~~~~g~~--~~~~~De~~R~~tt~e~La~L~P~f~~~~~~Gtv-  249 (404)
T PRK06205        173 GISREEQDELAVRSHQRAAAAQEAGLFDDEIVPVTVPQRKGDP--VVVDRDEHPRADTTVESLAKLRPIMGKQDPEATV-  249 (404)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC--EEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCE-
T ss_conf             9499999999999999999987759860137767850457885--0351465766898865674178755555778842-


Q ss_pred             CCCCCHHHCCCCCCCCCCCC----CCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCC
Q ss_conf             13327100114310013654----4628999999999----9999962897352466767799999999987788--577
Q gi|255764463|r  129 DVALDPFTIHGHDGILCDGE----IVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INV  198 (337)
Q Consensus       129 DVcLc~YT~hGHcGi~~~g~----IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~  198 (337)
                              +-|++.-+.||-    +-..+..+.|.-.    =+.++.+|+|   |..|--|-|.||+++|+++|.  .|+
T Consensus       250 --------TAgNsS~~~DGAAa~ll~s~~~a~~~gl~plari~~~~~~g~d---P~~m~~gpv~A~~~~L~~agl~~~Di  318 (404)
T PRK06205        250 --------TAGNASGQNDAAAACLVTTEDKAEELGLEPLARLVSWAVAGVE---PSRMGIGPVPATEKALARAGLTLDDI  318 (404)
T ss_pred             --------ECCCCCCCCCCHHHHEECCHHHHHHCCCCCEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHC
T ss_conf             --------2565575554314310037999997699951999830278608---78827274999999999859983107


Q ss_pred             CEECHHHHHHHH
Q ss_conf             300336664354
Q gi|255764463|r  199 GIMPYVAKFNSS  210 (337)
Q Consensus       199 ~ImsYsaKfaS~  210 (337)
                      -+.----=||+.
T Consensus       319 d~~EinEAFA~q  330 (404)
T PRK06205        319 DLIELNEAFAAQ  330 (404)
T ss_pred             CEEEECHHHHHH
T ss_conf             744631477888


No 236
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=40.22  E-value=31  Score=16.04  Aligned_cols=64  Identities=28%  Similarity=0.382  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCCCHHHHHH---------------HHHHHCCCCCCCEECHHHHHHHHHHC
Q ss_conf             62899999999999999628973524-667677999999---------------99987788577300336664354301
Q gi|255764463|r  150 VNDETIELISHAAVIQADAGADIIAP-SEMMDGRVQEIR---------------KKLDSHGHINVGIMPYVAKFNSSFYG  213 (337)
Q Consensus       150 dND~Tl~~L~k~Al~~A~AGaDivAP-SdMMDGrV~aIR---------------~~Ld~~g~~~~~ImsYsaKfaS~fYg  213 (337)
                      +-|..-+.|...|..+.++|||+++- .-.|---.-.|+               +++-..|...+++|.--.--.+.||-
T Consensus        56 ~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~  135 (230)
T COG1794          56 EWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYR  135 (230)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf             65658999999999999659998997077378999999985499733078999999876588615886130057768999


No 237
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=40.04  E-value=3  Score=22.95  Aligned_cols=144  Identities=19%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCH
Q ss_conf             7863288999999----9999998889367633025633455445421576537999999999730-1447986133271
Q gi|255764463|r   60 PDVMRMSIDVAVE----KIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDP  134 (337)
Q Consensus        60 PGv~R~Sid~L~~----eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~  134 (337)
                      =|+.|--.|...-    ...++++.|.-. -+.|.+..+.+-..-.|...++ .....+..+|-.| ++-+.+|- .-++
T Consensus       188 ~gisRe~qD~~A~~Sh~rA~~A~~~G~f~-eivp~~~~~g~~~~~De~iR~~-tt~e~La~L~p~F~~~~GtvTA-gNss  264 (426)
T PRK08170        188 FGITREAMDAYAARSHQRLAAAQAEGRLK-EVVPLFDRDGKFYDQDDGVRPD-SSMEKLAKLKPFFDRPYGRVTA-GNSS  264 (426)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCEEEECCCCCCCC-CCHHHHHHCCCCCCCCCCEEEC-CCCC
T ss_conf             79799999999997199999999809986-6871464887599567654778-8876785389760078982641-5788


Q ss_pred             HHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf             0011431001-365446289999999999999962897352466767799999999987788--577300336664354
Q gi|255764463|r  135 FTIHGHDGIL-CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS  210 (337)
Q Consensus       135 YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~  210 (337)
                      -.++|=+.++ ...+--....++-|+++ +.++.+|+|   |+.|.-|-|.+++++|+.+|.  .|+-+.---==||+.
T Consensus       265 ~~~DGAAavll~s~~~a~~~gl~pla~i-v~~~~~g~d---P~~mg~gPv~A~~k~L~~agl~~~DiD~~EinEAFAaq  339 (426)
T PRK08170        265 QITDGACWLLLASEEAVKKYGLPPLGRI-VDSQWAALD---PSQMGLGPVHAATPLLQRHGLTLEDIDYWEINEAFAAQ  339 (426)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEE-EEEEECCCC---HHHHCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf             7531889999970888986699741999-976771368---88966584999999999809986765524340466899


No 238
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues,  a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD),  D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=39.70  E-value=32  Score=15.98  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             CCEEEECCCCCEEECCCC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             116667589881104888--786328899999999999988893676330256334554454215765379999999997
Q gi|255764463|r   42 LPIFLTSGEKTVESINSM--PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK  119 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SM--PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~  119 (337)
                      .|++=-=|-..+++|+.-  -+.+-.+.+.+.++++++.+.|.+++-+=.+.+... +    +.   -.--.+.++++++
T Consensus       113 ~Pl~~LLGg~~r~~i~~y~s~~~~~~~~~~~~~~~~~~~~~Gf~~~K~k~g~~~~~-~----~~---~~~di~~v~~ir~  184 (357)
T cd03316         113 VPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-G----ED---LREDLARVRAVRE  184 (357)
T ss_pred             CCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-C----CC---HHHHHHHHHHHHH
T ss_conf             98999828865576236776247899999999999999976997898536888644-1----26---9999999999999


Q ss_pred             HH-CCCEEEECC
Q ss_conf             30-144798613
Q gi|255764463|r  120 NI-PNIGIITDV  130 (337)
Q Consensus       120 ~f-pdl~vi~DV  130 (337)
                      .+ |++-++.|.
T Consensus       185 ~~g~~~~l~vDa  196 (357)
T cd03316         185 AVGPDVDLMVDA  196 (357)
T ss_pred             HHCCCCEEEECC
T ss_conf             829995698657


No 239
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=39.55  E-value=32  Score=15.97  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99999999999988893676330
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIFP   89 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LFp   89 (337)
                      -..|.+.+.++.++||.+|-|=|
T Consensus        21 W~~l~~~~~~l~~~GitaiWiPP   43 (482)
T PRK09441         21 WNELAERAPGLADIGITAVWLPP   43 (482)
T ss_pred             HHHHHHHHHHHHHCCCCEEECCC
T ss_conf             99999878999966998798896


No 240
>TIGR00620 sporelyase spore photoproduct lyase; InterPro: IPR004594 Members of this family are involved in the direct repair of UV induced spore photoproducts (thymine dimer 5-thyminyl-5,6-dihydrothymine). The protein repairs UV radiation-induced DNA damage during spore germination by monomerization of these thymine dimers..
Probab=39.18  E-value=32  Score=15.93  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=50.0

Q ss_pred             CCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             47788877331166675898811048887863288999999999999888936763302563345544542157653799
Q gi|255764463|r   32 EHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLIN  111 (337)
Q Consensus        32 Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~  111 (337)
                      +-.--..=.|.|+||+||=.+             .-..|++.+++.+=.-++.=+-|-+|. +.             +..
T Consensus        82 ~A~YPLGFIiAP~yI~eGW~E-------------~Y~~Ll~~L~~~LP~d~~~~~TFE~I~-HR-------------fT~  134 (199)
T TIGR00620        82 KAGYPLGFIIAPIYIYEGWKE-------------GYRNLLEKLDEALPRDLRHDLTFEVIQ-HR-------------FTK  134 (199)
T ss_pred             CCCCCCEEEEEEEEEECCCCH-------------HHHHHHHHHHHHCCHHHHHCCCEEEEC-CC-------------CCC
T ss_conf             058780157710777548604-------------588999998884247665301312122-54-------------351


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999730144
Q gi|255764463|r  112 EGICAIKKNIPNI  124 (337)
Q Consensus       112 rAIr~IK~~fpdl  124 (337)
                      +|=+-|.+.||+-
T Consensus       135 ~AK~vI~~~yP~~  147 (199)
T TIGR00620       135 PAKRVIEKNYPKT  147 (199)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             5789887607887


No 241
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.61  E-value=33  Score=15.87  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             33116667589881104888786328899999999999988893676330256334554454215765379999999997
Q gi|255764463|r   40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK  119 (337)
Q Consensus        40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~  119 (337)
                      +=.|+.--=|-..++.|+.---+...+.+.+.+++++..+.|.++|-+=+.-+....+  +....   .-..+.++++++
T Consensus        97 ~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~K~k~~~~~~~~~--~~~~~---~~di~~v~~vR~  171 (352)
T cd03325          97 LGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID--TSKKV---DAAVERVAALRE  171 (352)
T ss_pred             CCCCHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CCHHH---HHHHHHHHHHHH
T ss_conf             4994999727766774268775688998999999999996799879986777434466--40319---999999999999


Q ss_pred             HHC-CCEEEECCC
Q ss_conf             301-447986133
Q gi|255764463|r  120 NIP-NIGIITDVA  131 (337)
Q Consensus       120 ~fp-dl~vi~DVc  131 (337)
                      .++ ++-++.|..
T Consensus       172 ~~G~~~~l~vDan  184 (352)
T cd03325         172 AVGPDIDIGVDFH  184 (352)
T ss_pred             HHCCCCCEEEECC
T ss_conf             8689981999889


No 242
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=38.50  E-value=19  Score=17.44  Aligned_cols=74  Identities=32%  Similarity=0.449  Sum_probs=50.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf             63288999999999999888936763302563345544542157653799999999973014479861332710011431
Q gi|255764463|r   62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc  141 (337)
                      +.--+.++.+..++-+.+-|+++|=+=      ..++.+          -++||.+++.||+..|               
T Consensus        19 lr~~~~e~a~~~a~Ali~gGi~~IEIT------l~sp~a----------~e~I~~l~~~~p~~lI---------------   67 (211)
T COG0800          19 IRGDDVEEALPLAKALIEGGIPAIEIT------LRTPAA----------LEAIRALAKEFPEALI---------------   67 (211)
T ss_pred             EEECCHHHHHHHHHHHHHCCCCEEEEE------CCCCCH----------HHHHHHHHHHCCCCEE---------------
T ss_conf             970899999999999997698769996------479878----------9999999986746588---------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf             00136544628999999999999996289735-246
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADII-APS  176 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS  176 (337)
                         --|-|.|.++++       ..+.|||+.+ .|.
T Consensus        68 ---GAGTVL~~~q~~-------~a~~aGa~fiVsP~   93 (211)
T COG0800          68 ---GAGTVLNPEQAR-------QAIAAGAQFIVSPG   93 (211)
T ss_pred             ---CCCCCCCHHHHH-------HHHHCCCCEEECCC
T ss_conf             ---245566999999-------99985997898999


No 243
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=38.41  E-value=2  Score=24.05  Aligned_cols=43  Identities=30%  Similarity=0.434  Sum_probs=27.6

Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf             99962897352466767799999999987788--57730033666435
Q gi|255764463|r  164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS  209 (337)
Q Consensus       164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS  209 (337)
                      .++.+|+|   |..|--|-|.+|++.|+.+|.  .|+-..----=||+
T Consensus       278 ~~~~~g~d---P~~m~~~p~~A~~k~L~~agl~~~Did~~EinEAFA~  322 (392)
T PRK05656        278 AYANAGVD---PAIMGIGPVSATRRCLDKAGWSLAELDLIEANEAFAA  322 (392)
T ss_pred             EEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHCCCEEEECCHHHH
T ss_conf             99996219---7893828999999999984998310877785216789


No 244
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=38.06  E-value=33  Score=15.82  Aligned_cols=86  Identities=17%  Similarity=0.158  Sum_probs=53.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-------ECCCCCHH
Q ss_conf             32889999999999998889367633025633455445421576537999999999730144798-------61332710
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGII-------TDVALDPF  135 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi-------~DVcLc~Y  135 (337)
                      .+++.+++.+|++.+.+.|.+.++|--+  ++.|.       .+-..+.++|+.|++.|..-+-|       .-.-..+|
T Consensus       113 k~Lt~eEi~~E~~al~~~G~krilLvtG--E~p~~-------~~~~Yi~~~i~~iy~~~~~~g~IrrvnVei~Pl~~eeY  183 (471)
T PRK09613        113 KKLTQEEIREEVKALESMGHKRLALVAG--EHPVN-------CDIDYILESIKTIYSTKNGNGEIRRVNVNIAPTTVENY  183 (471)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEC--CCCCC-------CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHH
T ss_conf             3789999999999999769731898714--68887-------98899999999998752467853368899447986999


Q ss_pred             H---CCCCCCCCCCCCCCHHHHHHH
Q ss_conf             0---114310013654462899999
Q gi|255764463|r  136 T---IHGHDGILCDGEIVNDETIEL  157 (337)
Q Consensus       136 T---~hGHcGi~~~g~IdND~Tl~~  157 (337)
                      .   ..|-+|+.-=.+--|.+|-+.
T Consensus       184 ~~L~~aGigt~~vfQETYh~~tY~~  208 (471)
T PRK09613        184 KKLKEAGIGTYQLFQETYHKPTYEK  208 (471)
T ss_pred             HHHHHCCCCEEEEEEEECCHHHHHH
T ss_conf             9999869996999863078878998


No 245
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=37.22  E-value=3.7  Score=22.27  Aligned_cols=38  Identities=8%  Similarity=0.184  Sum_probs=25.5

Q ss_pred             HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECH
Q ss_conf             9999628973524667677999999999877885--7730033
Q gi|255764463|r  163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPY  203 (337)
Q Consensus       163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsY  203 (337)
                      +.++.+|+   .|.+|-.|-+.+++++|+.+|..  |+.+.--
T Consensus       277 ~~~~~~g~---~p~~~~~~p~~A~~~~l~~agl~~~Did~~Ei  316 (393)
T PRK08235        277 LAHTAIAV---EAKDFPRTPGYAINALLEKTGKTIEDIDLFEI  316 (393)
T ss_pred             ECCEEEEE---CHHHHCCCHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf             81428860---87885447799999999984998321673241


No 246
>pfam10996 Beta-Casp Beta-Casp domain. The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains.
Probab=37.21  E-value=26  Score=16.59  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             HCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCCCEECHHHH
Q ss_conf             62897352466767799999999987---78857730033666
Q gi|255764463|r  167 DAGADIIAPSEMMDGRVQEIRKKLDS---HGHINVGIMPYVAK  206 (337)
Q Consensus       167 ~AGaDivAPSdMMDGrV~aIR~~Ld~---~g~~~~~ImsYsaK  206 (337)
                      .-++=|+|+|.||+|-  .+|..|..   +--..+.+.+|.+.
T Consensus        77 ~~p~IIiassgml~~G--~s~~~~~~~~~~~~n~ii~tgy~~~  117 (124)
T pfam10996        77 GGPKVIIASSGMLTGG--RSRHHLKKLAPDPKNTVILTGYQAE  117 (124)
T ss_pred             CCCEEEEECCCCCCCC--HHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             8984999578544777--7999999974999987999789989


No 247
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.  This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=37.07  E-value=35  Score=15.71  Aligned_cols=89  Identities=19%  Similarity=0.178  Sum_probs=37.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      -++.+...+.++.+.+.|..++=|=-.-++.  +.... +.+....+...++.+|+.. ++=|+.-+  -|+.       
T Consensus       108 g~s~ee~~~~a~~~~~~gad~lElNls~~~~--~~~~~-~~~~~~~~~~iv~~Vk~~~-~~Pv~vKL--sP~~-------  174 (325)
T cd04739         108 GVSAGGWVDYARQIEEAGADALELNIYALPT--DPDIS-GAEVEQRYLDILRAVKSAV-TIPVAVKL--SPFF-------  174 (325)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCC-CCHHHHHHHHHHHHHHHCC-CCCEEEEC--CCCC-------
T ss_conf             8998999999999976499879996566788--85544-2106889999999998607-88669953--9983-------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             1365446289999999999999962897352466
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSE  177 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd  177 (337)
                                  ..+..+|....++|||-|.-..
T Consensus       175 ------------~di~~ia~aa~~~GAdgi~liN  196 (325)
T cd04739         175 ------------SALAHMAKQLDAAGADGLVLFN  196 (325)
T ss_pred             ------------CHHHHHHHHHHHCCCCEEEEEC
T ss_conf             ------------0099999999975998899735


No 248
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=37.05  E-value=35  Score=15.71  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHH-HHC-CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--EECCCC
Q ss_conf             15765379999999997-301-44798613327100114310013654462899999999999999628973--524667
Q gi|255764463|r  103 IIDPDNLINEGICAIKK-NIP-NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI--IAPSEM  178 (337)
Q Consensus       103 A~n~dglv~rAIr~IK~-~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--vAPSdM  178 (337)
                      +||+...+.++|+.|.+ .+| +...|               ++.|+  -.|.|.+.+.+....++.-|.++  +-...-
T Consensus         9 a~NE~~~I~~~l~sl~~q~YP~~~~~I---------------~VvDd--stD~t~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (232)
T cd06437           9 VFNEKYVVERLIEAACALDYPKDRLEI---------------QVLDD--STDETVRLAREIVEEYAAQGVNIKHVRRADR   71 (232)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEE---------------EEEEC--CCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             589889999999999967999980899---------------99979--9966999999999766641996899836988


Q ss_pred             CCCHHHHHHHHHHHCCCC
Q ss_conf             677999999999877885
Q gi|255764463|r  179 MDGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       179 MDGrV~aIR~~Ld~~g~~  196 (337)
                      .-|..+++..+|......
T Consensus        72 ~g~Ka~aln~gl~~a~gd   89 (232)
T cd06437          72 TGYKAGALAEGMKVAKGE   89 (232)
T ss_pred             CCCHHHHHHHHHHHCCCC
T ss_conf             886699999999977898


No 249
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155   Two different types of thiolase , ,  are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis.   In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes.   There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction.   Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=36.78  E-value=13  Score=18.61  Aligned_cols=135  Identities=24%  Similarity=0.289  Sum_probs=85.8

Q ss_pred             CCCCEEECCCCCCCCCCCHHHH----HHHHHHHHHCCCCEEEEEECCCCCCCC--CCCC----CCCCCC-----CHHHHH
Q ss_conf             8988110488878632889999----999999998889367633025633455--4454----215765-----379999
Q gi|255764463|r   49 GEKTVESINSMPDVMRMSIDVA----VEKIKQVADLGIPAIAIFPNIPMDLRN--NTGS----HIIDPD-----NLINEG  113 (337)
Q Consensus        49 g~~~k~~I~SMPGv~R~Sid~L----~~eie~~~~lGI~av~LFp~I~~~~Kd--~~Gs----eA~n~d-----glv~rA  113 (337)
                      |... |.+.-..+|.|--.|+.    -+...++++.|-=.=-+||+.-...|.  +.|.    .-++.|     +.-...
T Consensus       180 G~tA-E~~A~~~~I~R~~qDe~A~~Sh~~Aa~A~~~G~f~~Ei~P~~~~~~~~~~~~G~~~~~~~~~~De~iRp~~t~e~  258 (447)
T TIGR01930       180 GQTA-ENLAKKYGISREEQDEYALRSHQRAAKAWEEGRFKDEIVPVTVKGRKGKPESGLMEKPVVVSTDEGIRPNTTLEK  258 (447)
T ss_pred             CHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
T ss_conf             0579-999887488888999999999999999997045211113335524778885675245625730677588887787


Q ss_pred             HHHHHHHHCCCE----EEECCCCCHHHCCCCCCCCCCC----CCCHHHHHHHHHH--HH----HHHHHCCCCEEEC-CCC
Q ss_conf             999997301447----9861332710011431001365----4462899999999--99----9999628973524-667
Q gi|255764463|r  114 ICAIKKNIPNIG----IITDVALDPFTIHGHDGILCDG----EIVNDETIELISH--AA----VIQADAGADIIAP-SEM  178 (337)
Q Consensus       114 Ir~IK~~fpdl~----vi~DVcLc~YT~hGHcGi~~~g----~IdND~Tl~~L~k--~A----l~~A~AGaDivAP-SdM  178 (337)
                      +.++|-.|.+-.    ++|         =|=+.=+.||    -|-+.+.++.|..  --    ++++.+|+|   | ++|
T Consensus       259 La~L~P~F~~~g~~G~TvT---------AGNss~~nDGA~a~~lmSe~~a~~lGL~~~PlA~i~~~~~~G~d---P~~~m  326 (447)
T TIGR01930       259 LAKLKPAFKEEGPDGTTVT---------AGNSSPLNDGAAALLLMSEEKAKELGLNKTPLARIVSFAVAGVD---PVEIM  326 (447)
T ss_pred             HCCCCCCCCCCCCCCCEEE---------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCC---HHHHH
T ss_conf             3287864367867987687---------32333212356425665079999808899426899410333057---48861


Q ss_pred             CCCHHHHHHHHHHHCCCC
Q ss_conf             677999999999877885
Q gi|255764463|r  179 MDGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       179 MDGrV~aIR~~Ld~~g~~  196 (337)
                      -=|=+.||+++|+++|.+
T Consensus       327 g~GP~~A~~~aL~kaGL~  344 (447)
T TIGR01930       327 GLGPVPAIPKALKKAGLS  344 (447)
T ss_pred             CCCCHHHHHHHHHHHCCC
T ss_conf             677588999999984987


No 250
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405   A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=36.74  E-value=21  Score=17.15  Aligned_cols=47  Identities=21%  Similarity=0.262  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEC---CCCCCCHHHHHHHHHHHCC-------CCCCCEE
Q ss_conf             999999999999628973524---6676779999999998778-------8577300
Q gi|255764463|r  155 IELISHAAVIQADAGADIIAP---SEMMDGRVQEIRKKLDSHG-------HINVGIM  201 (337)
Q Consensus       155 l~~L~k~Al~~A~AGaDivAP---SdMMDGrV~aIR~~Ld~~g-------~~~~~Im  201 (337)
                      |..-.++|..+-+.|-.+++=   |+=|.--=+.||+.||++|       +++|-|.
T Consensus       264 ~~nai~va~eLg~~~~~~~gVRiDSGDL~~LSk~~R~~LD~AGaqfqvPWL~~vkI~  320 (523)
T TIGR01513       264 LPNAIAVAKELGEQGKEVVGVRIDSGDLAYLSKKVRKELDEAGAQFQVPWLEEVKIV  320 (523)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHCHHCCCCCHHCCEEE
T ss_conf             999999999975205505889961177999999999999861111158600375489


No 251
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=36.72  E-value=35  Score=15.68  Aligned_cols=12  Identities=17%  Similarity=0.495  Sum_probs=5.8

Q ss_pred             HCCCCEEEEEEC
Q ss_conf             888936763302
Q gi|255764463|r   79 DLGIPAIAIFPN   90 (337)
Q Consensus        79 ~lGI~av~LFp~   90 (337)
                      +++.+.|+|+|.
T Consensus        69 ~vk~~~ivlYPy   80 (613)
T PRK03991         69 KVKAENIVLYPY   80 (613)
T ss_pred             HCCCCEEEEECC
T ss_conf             559877999451


No 252
>pfam08029 HisG_C HisG, C-terminal domain.
Probab=36.69  E-value=35  Score=15.67  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             89999999999977269999820
Q gi|255764463|r  303 KNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       303 ~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      .++.+.|.+--+|++||..|+-|
T Consensus        46 ~~~~~~~~~~~Lk~~GA~~Ilv~   68 (73)
T pfam08029        46 PEKEVWEIMDELKALGASGILVL   68 (73)
T ss_pred             EHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             27899999999998799779996


No 253
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=36.58  E-value=13  Score=18.57  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf             99962897352466767799999999987788--57730033666435
Q gi|255764463|r  164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS  209 (337)
Q Consensus       164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS  209 (337)
                      .++.+|.|   |..|-.|-+.+|+++|+.+|.  .|+-+.---==||+
T Consensus       275 ~~~~~g~d---P~~m~~~p~~A~~k~L~~agl~~~Did~~EinEAFA~  319 (390)
T PRK06504        275 HMTVTGGD---PVIMLEAPLPATERALKKAGMKIDDIDLYEVNEAFAS  319 (390)
T ss_pred             CCEEEECC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
T ss_conf             30375268---7887243999999999985998113885451035588


No 254
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=36.41  E-value=35  Score=15.64  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             9999999999988893676330256334----554454215765379999999997301447986133271001143100
Q gi|255764463|r   68 DVAVEKIKQVADLGIPAIAIFPNIPMDL----RNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        68 d~L~~eie~~~~lGI~av~LFp~I~~~~----Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      ....+.++.+.+.+++-|.+..++|...    --..|..-+..-+-+..|.+.++ .-+|.+|.     --+-.=||+|-
T Consensus       101 ~~~~~~~~~~~~~~~~~v~~~~G~p~~~~v~~~~~~G~~v~~~v~s~~~A~~a~~-~G~D~iV~-----qG~eAGGH~G~  174 (330)
T pfam03060       101 PDYGDDDDSLKDAKPKVVSFGFGLPPEDVIERLKESGTKVIPTVSSAKEARKAEA-AGADAVVA-----QGPEAGGHRGT  174 (330)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEE-----ECCCCCCCCCC
T ss_conf             8379999999974999999899898279999999879989998189999999998-19998999-----66766777888


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf             13654462899999999999999628973524667677999
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ  184 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~  184 (337)
                      -.     ...| -.|..+..  ..-..-+||--..+|||=-
T Consensus       175 ~~-----~~~~-~~L~~~v~--~~~~iPvIaAGGI~dg~~i  207 (330)
T pfam03060       175 EV-----GTGT-FLLVPTVV--DAVDIPVIAAGGIADGRGI  207 (330)
T ss_pred             CC-----CCCH-HHHHHHHH--HHCCCCEEEECCCCCHHHH
T ss_conf             77-----7307-77789999--8716977852662899999


No 255
>KOG0478 consensus
Probab=36.21  E-value=25  Score=16.70  Aligned_cols=113  Identities=16%  Similarity=0.222  Sum_probs=56.2

Q ss_pred             EECCCCCCCCCCCHHHHHHHHH--HHHHCCCCEEEEEECCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHH
Q ss_conf             1048887863288999999999--99988893676330256334554454215----------76537999999999730
Q gi|255764463|r   54 ESINSMPDVMRMSIDVAVEKIK--QVADLGIPAIAIFPNIPMDLRNNTGSHII----------DPDNLINEGICAIKKNI  121 (337)
Q Consensus        54 ~~I~SMPGv~R~Sid~L~~eie--~~~~lGI~av~LFp~I~~~~Kd~~GseA~----------n~dglv~rAIr~IK~~f  121 (337)
                      +++..=|.+|-.=..++..+|-  ++.++|+=. .||++..  +.++.+- -|          +|--=-.+-++-+-+-.
T Consensus       411 ~elskrpdiy~lLa~SiAPsIye~edvKkglLL-qLfGGt~--k~~~~~~-~~R~~INILL~GDPGtsKSqlLqyv~~l~  486 (804)
T KOG0478         411 QELSKRPDIYELLARSIAPSIYELEDVKKGLLL-QLFGGTR--KEDEKSG-RFRGDINILLVGDPGTSKSQLLQYCHRLL  486 (804)
T ss_pred             HHHHCCCCHHHHHHHHHCHHHHCCCCHHHHHHH-HHHCCCC--CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             987628509999988506565344226666778-8756876--3223344-42455228994699867899999999747


Q ss_pred             C-----------CCEEEECCCCCHH-------------HCCCCCCCCCCCCC-CHHHH--HHHHHHHHHHHHHCCC
Q ss_conf             1-----------4479861332710-------------01143100136544-62899--9999999999996289
Q gi|255764463|r  122 P-----------NIGIITDVALDPF-------------TIHGHDGILCDGEI-VNDET--IELISHAAVIQADAGA  170 (337)
Q Consensus       122 p-----------dl~vi~DVcLc~Y-------------T~hGHcGi~~~g~I-dND~T--l~~L~k~Al~~A~AGa  170 (337)
                      |           ..++-+=|.-||=             .+.|||+|=+=++. |+-.+  ++.+-.|-|+.|+||.
T Consensus       487 pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGI  562 (804)
T KOG0478         487 PRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGI  562 (804)
T ss_pred             CCCEEECCCCCCHHCCEEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf             7540405876302200356776576554665048489728965771123333277889999999876311743022


No 256
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=36.19  E-value=36  Score=15.62  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE-EECCCCCCCHHHHHHHHH
Q ss_conf             9999999730144798613327100114310013654462899999999999999628973-524667677999999999
Q gi|255764463|r  112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI-IAPSEMMDGRVQEIRKKL  190 (337)
Q Consensus       112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi-vAPSdMMDGrV~aIR~~L  190 (337)
                      ..++.||..+|++-|+.      +|.|..           +.    +...   .-++||+- |.-++-.+-=+.|||...
T Consensus        69 ~~~~~i~~~~p~~~viv------ls~~~~-----------~~----~v~~---al~~Ga~Gyl~K~~~~~~L~~AI~~v~  124 (216)
T PRK10840         69 TLIKYIKRHFPSLSIIV------LTMNNN-----------PA----ILSA---VLDLDIEGIVLKQGAPTDLPKALAALQ  124 (216)
T ss_pred             HHHHHHHHHCCCCEEEE------EECCCC-----------HH----HHHH---HHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             99999998589980899------847787-----------89----9999---985897489987899999999999998


Q ss_pred             HHC
Q ss_conf             877
Q gi|255764463|r  191 DSH  193 (337)
Q Consensus       191 d~~  193 (337)
                      ...
T Consensus       125 ~G~  127 (216)
T PRK10840        125 KGK  127 (216)
T ss_pred             CCC
T ss_conf             799


No 257
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=36.01  E-value=36  Score=15.60  Aligned_cols=231  Identities=18%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-------CCCCC--------------------CCCCHHHHHH
Q ss_conf             63288999999999999888936763302563345544-------54215--------------------7653799999
Q gi|255764463|r   62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNT-------GSHII--------------------DPDNLINEGI  114 (337)
Q Consensus        62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~-------GseA~--------------------n~dglv~rAI  114 (337)
                      -+-+|+|++.+.++++.+.|++-+++=++..+++.-+.       |-.++                    |...+....+
T Consensus        38 a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~~~~~~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el  117 (336)
T PRK06245         38 ASLLSPEEVREILERGQDAGCTEALFTFGEVPDESEEIREQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEM  117 (336)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             68779999999999999769839998057886636899999997075507788999858887636552236676789999


Q ss_pred             HHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCHH----------
Q ss_conf             9999730144798613327100114310013654462899999999999999628-97352466767799----------
Q gi|255764463|r  115 CAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG-ADIIAPSEMMDGRV----------  183 (337)
Q Consensus       115 r~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG-aDivAPSdMMDGrV----------  183 (337)
                      +.+|+.-..++.|....-.-..+.+|.+  .-+++    +-..|.-+    ..|| .-|=--+.||=|.+          
T Consensus       118 ~~Lk~v~asmG~mlE~~se~l~~~~h~~--~P~K~----~~~rL~~i----e~Ah~lgIptTatmL~G~gET~eeRi~hL  187 (336)
T PRK06245        118 EALKPVNASMGLMLEQTSPRLLETVHRH--SPGKD----PELRLETI----EWAGELKIPFTTGLLIGIGETWEDRIESL  187 (336)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHCCC--CCCCC----HHHHHHHH----HHHHHCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf             9875359766757123568988763044--89878----89999999----99998399722024520669999999999


Q ss_pred             HHHHHHHHHCC-CCCCCEECHHHHHHHHHH-CC---H----HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999998778-857730033666435430-10---1----675310244677774431572114788988887664089
Q gi|255764463|r  184 QEIRKKLDSHG-HINVGIMPYVAKFNSSFY-GP---Y----RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA  254 (337)
Q Consensus       184 ~aIR~~Ld~~g-~~~~~ImsYsaKfaS~fY-gP---F----RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA  254 (337)
                      .+||+.=|+.| |+.+.++++..|-...+- .|   .    |--|=|.--+ .+--+-|.+| |-...+..  +-+.-||
T Consensus       188 ~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~~~~~~e~l~~iAvARiiL-~~~i~IQapp-nL~~~~~~--~~L~~Ga  263 (336)
T PRK06245        188 EAIAELHERYGHIQEVIIQNFRPKPGIPMENHPEPSPEEMPRVVALARLIL-PPDISIQVPP-NLVDDTGL--LFLEAGA  263 (336)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEEEECC-CCCCHHHH--HHHHCCC
T ss_conf             999998863497579950687789875334699979999999999999966-9985797698-67855789--9986787


Q ss_pred             C---------EEEECCCHHH--HHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             8---------7995531145--8999999962499-899993461899999999888978899999999999
Q gi|255764463|r  255 D---------MLLVKPGLPY--LDVCFRIKEKFGL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF  314 (337)
Q Consensus       255 D---------~lMVKPa~~y--LDii~~~k~~~~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~  314 (337)
                      |         .=-|.|--|+  +|-++++-+.... .+----|--+|      ...||++.+  +.+.+...
T Consensus       264 nDlGGisp~t~d~vnpe~~wp~~~~l~~~~~~~g~~l~~Rl~vyp~~------~~~~w~~~~--~~~~~~~~  327 (336)
T PRK06245        264 DDLGGISPVTKDEVNPEYPWPDIDELKEILEEAGWQLKERLPVYPKY------VKEGWLSPR--LQEKIERL  327 (336)
T ss_pred             CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH------HCCCCCCHH--HHHHHHHH
T ss_conf             66788775766601889999899999999997599656436888667------515766989--99999986


No 258
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.89  E-value=36  Score=15.59  Aligned_cols=179  Identities=15%  Similarity=0.139  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC
Q ss_conf             99999999999988893676330256334554454215765379999999997301447986133271001143100136
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD  146 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~  146 (337)
                      +..-++.++...+.|+.-+.+-- ++.. +        .....-...|+.|.+..          ..|.|        -.
T Consensus        29 ~gdP~~~ak~f~~~GadelhivD-ld~a-~--------~g~~~n~~~I~~I~~~~----------~ipi~--------vG   80 (253)
T PRK01033         29 VGDPINAVRIFNEKEADELIVLD-IDAS-R--------KGREPNYELIENLASEC----------FMPLC--------YG   80 (253)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEE-CCCC-C--------CCCCCHHHHHHHHHHHC----------CCCEE--------EE
T ss_conf             88999999999987999899994-7454-2--------48801699999999876----------99889--------86


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH--HCCCC
Q ss_conf             5446289999999999999962897352466767799999999987788577300336664354301016753--10244
Q gi|255764463|r  147 GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI--STRDL  224 (337)
Q Consensus       147 g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~--~S~p~  224 (337)
                      |-|.+-++++       .+-++|||=|.-+..-=---..+++..                   .-||+=+=.+  +..  
T Consensus        81 GGIrs~e~~~-------~ll~~GadkViigs~a~~~p~~i~~~~-------------------~~fG~q~IvvsiD~k--  132 (253)
T PRK01033         81 GGIKTVEQAK-------RIFSLGVEKVSISTAALEDPKLITEAA-------------------EIYGSQSVVVSIDVK--  132 (253)
T ss_pred             CCCCCHHHHH-------HHHHCCCCEEEECCHHHHCCHHHHHHH-------------------HHCCCCCEEEEEEEE--
T ss_conf             8812168889-------998679866999987863741657899-------------------877997699999982--


Q ss_pred             CCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCEEEEC----C---CHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             6777744315721--------14788988887664089879955----3---1145899999996249989999346189
Q gi|255764463|r  225 LKGDKKTYYLDPA--------NVQEAIREASIDIQESADMLLVK----P---GLPYLDVCFRIKEKFGLPTFAYQVSGEY  289 (337)
Q Consensus       225 ~~gdr~sYQmd~~--------n~~eA~~e~~~D~~EGAD~lMVK----P---a~~yLDii~~~k~~~~~P~~aYqVSGEY  289 (337)
                       ++.-..|+.=..        +..+.+.+   -.+.|+.-+++-    -   ..+-+++++++++.+++|+.|   ||  
T Consensus       133 -~~~~~~~~v~~~g~~~~t~~~~~~~~~~---~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~~~ipiIa---sG--  203 (253)
T PRK01033        133 -KRLFGRYDVYTHNGTKKTGLDPVEFAKQ---AEELGAGEIVLNSIDRDGVMKGYDLELIKKISSAVKIPVTA---LG--  203 (253)
T ss_pred             -CCCCCCEEEEEECCCCCCCCCHHHHHHH---HHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC--
T ss_conf             -4877834789867953678558999999---87469779999878488976687999999999878999999---78--


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             9999999888978899999999999772699998
Q gi|255764463|r  290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       290 ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                               |.-+.++. .   ..|+..|++.++
T Consensus       204 ---------Gi~s~~di-~---~l~~~~~v~gv~  224 (253)
T PRK01033        204 ---------GAGSLDDI-A---DLIQEAGASAAA  224 (253)
T ss_pred             ---------CCCCHHHH-H---HHHHHCCCEEEE
T ss_conf             ---------98999999-9---999867973997


No 259
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=35.80  E-value=36  Score=15.58  Aligned_cols=12  Identities=33%  Similarity=0.313  Sum_probs=6.3

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999730144
Q gi|255764463|r  113 GICAIKKNIPNI  124 (337)
Q Consensus       113 AIr~IK~~fpdl  124 (337)
                      .++.+|+..|++
T Consensus        67 lL~~l~~~~p~~   78 (441)
T PRK10365         67 TLKEIKALNPAI   78 (441)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999998429898


No 260
>pfam09043 Lys-AminoMut_A D-Lysine 5,6-aminomutase alpha subunit. Members of his family are involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state.
Probab=35.78  E-value=29  Score=16.21  Aligned_cols=27  Identities=41%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             013654462899999999999999628973524
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      |+..|.|--|.      -||..-|++||||||-
T Consensus       152 IVATGnIYeDv------~QAqAAarqGADiIAV  178 (509)
T pfam09043       152 IVATGNIYEDV------VQAQAAARQGADVIAV  178 (509)
T ss_pred             EEEECCCHHHH------HHHHHHHHCCCCEEEE
T ss_conf             98307513018------9999999758988975


No 261
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=35.71  E-value=36  Score=15.57  Aligned_cols=122  Identities=15%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             CCCCHHH--HHHHHHHHCCCCCC-CEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             7677999--99999987788577-30033666435430101675310244677774431572114788988887664089
Q gi|255764463|r  178 MMDGRVQ--EIRKKLDSHGHINV-GIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA  254 (337)
Q Consensus       178 MMDGrV~--aIR~~Ld~~g~~~~-~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA  254 (337)
                      =||-|=.  ..|+.++..|+... .||+..  --+.+-+      +...-.+ ..-..-++..++.|.++.-....-=-.
T Consensus       233 GmDQRKi~mLARey~~~~~~k~kpiil~h~--mlpGL~~------g~~KMSk-Sdp~saI~m~Ds~e~V~kKIkkAyCpp  303 (399)
T PTZ00126        233 GMDQRKVNMLAREYCDLKKIKKKPIILSHH--MLPGLLE------GQEKMSK-SDPNSAIFMEDSAEEVNRKIKKAYCPP  303 (399)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCEEEECC--CCCCCCC------CCCCCCC-CCCCCEEEECCCHHHHHHHHHHCCCCC
T ss_conf             601999999999987652887786798577--7765566------8765666-898772120189999999998456999


Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCE-EEEECC-----------HHHHHHHHHHHCCCCC---HHHHHHHHHHHHH
Q ss_conf             87995531145899999996249989-999346-----------1899999999888978---8999999999997
Q gi|255764463|r  255 DMLLVKPGLPYLDVCFRIKEKFGLPT-FAYQVS-----------GEYAMIKAASLQGWIN---KNDAMMESLLAFK  315 (337)
Q Consensus       255 D~lMVKPa~~yLDii~~~k~~~~~P~-~aYqVS-----------GEYami~~a~~~g~~d---~~~~~~E~l~~~k  315 (337)
                      ..   --+-|-|++++-+-    +|. ..+.|.           -.|.-+.++-.+|-+.   .+.++-+.|..+-
T Consensus       304 ~~---ve~NPvLe~~kyvI----fP~~~~f~V~R~ek~GG~~ty~s~eeLe~dy~~g~LHP~DLK~ava~~Ln~iL  372 (399)
T PTZ00126        304 GV---IEGNPIIAYFKSIV----FPKFNSFTIERKEKNGGDVTYNTYEELEADYLSGALHPADLKPALAKYLNLML  372 (399)
T ss_pred             CC---CCCCCHHHHHHHHC----CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             88---68783999988732----04578358856755588771558999999997599898999999999999999


No 262
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=35.62  E-value=7.8  Score=20.09  Aligned_cols=44  Identities=25%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf             999962897352466767799999999987788--57730033666435
Q gi|255764463|r  163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS  209 (337)
Q Consensus       163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS  209 (337)
                      +.++.+|+|   |..|..|-|.||+++|+.+|.  .|+-+.----=||+
T Consensus       301 ~~~~~~g~d---P~~mg~gPv~Ai~~~L~r~gl~~~Did~~EiNEAFA~  346 (417)
T PRK06025        301 VAMANMGDD---PTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAV  346 (417)
T ss_pred             EEEEEEECC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
T ss_conf             877788628---8887146899999999876997135777886067899


No 263
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=35.51  E-value=8.6  Score=19.80  Aligned_cols=45  Identities=27%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf             999962897352466767799999999987788--577300336664354
Q gi|255764463|r  163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS  210 (337)
Q Consensus       163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~  210 (337)
                      +.++.+|+|   |..|-.|-|.||+++|+..|.  .|+-+.----=||+.
T Consensus       276 ~~~a~~g~d---P~~m~~~Pv~A~~~~L~ragl~~~Did~~EinEAFA~q  322 (392)
T PRK07108        276 RGFAVAGCE---PDEMGIGPVFAVPKLLKQAGLKVDDIDLWELNEAFAVQ  322 (392)
T ss_pred             EEEEEEEEC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHH
T ss_conf             954688708---78860459999999999759973357734640577888


No 264
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=35.43  E-value=37  Score=15.54  Aligned_cols=220  Identities=18%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             86328899999999999988893676330256334554454215765---379999999997301447986133271001
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD---NLINEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d---glv~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      |-..++.+.+++.++++++.|..-+=+ |+  ++  +--|..-..++   .-+--.|+.||++| ++.|=.|    .|..
T Consensus        17 gg~~~~~~~a~~~a~~~i~~GAdiIDI-Ga--eS--TrPg~~~is~~eE~~Rl~pvi~~l~~~~-~~~iSID----T~~~   86 (257)
T cd00739          17 GGRFLSLDKAVAHAEKMIAEGADIIDI-GG--ES--TRPGADPVSVEEELERVIPVLEALRGEL-DVLISVD----TFRA   86 (257)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEE-CC--CC--CCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEE----CCCH
T ss_conf             985889999999999999879989997-98--75--8999986998888988999999998607-9828997----9975


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-CCCCC-CCH-HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf             1431001365446289999999999999962897352-46676-779-99999999877885773003366643543010
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA-PSEMM-DGR-VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP  214 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-PSdMM-DGr-V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP  214 (337)
                                            +.|-.--++|+|+|- =|.-. |.. ...+.+    .+. .+.+| |+-         
T Consensus        87 ----------------------~Va~~al~~Ga~iINDisg~~~d~~m~~~va~----~~~-~~ilm-H~~---------  129 (257)
T cd00739          87 ----------------------EVARAALEAGADIINDVSGGSDDPAMLEVAAE----YGA-PLVLM-HMR---------  129 (257)
T ss_pred             ----------------------HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----HCC-CEEEE-CCC---------
T ss_conf             ----------------------99999998499899753424477789999998----499-99997-689---------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCC--CEEEECCCHH-------HHHHHHHHHH--HCCCCEEE
Q ss_conf             16753102446777744315721147889-88887664089--8799553114-------5899999996--24998999
Q gi|255764463|r  215 YRDAISTRDLLKGDKKTYYLDPANVQEAI-REASIDIQESA--DMLLVKPGLP-------YLDVCFRIKE--KFGLPTFA  282 (337)
Q Consensus       215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~-~e~~~D~~EGA--D~lMVKPa~~-------yLDii~~~k~--~~~~P~~a  282 (337)
                            ..|.-.-+...|.=-...-..-+ .....=.+.|-  +-+++-||+-       .|.+++.+..  .++.|+.+
T Consensus       130 ------g~p~~m~~~~~~~dv~~~i~~~f~~~i~~l~~~Gi~~~~IiiDPG~GFgKt~~~n~~ll~~l~~f~~~~~PiLv  203 (257)
T cd00739         130 ------GTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPVLV  203 (257)
T ss_pred             ------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             ------98422233786330999999999999999998799825199708878788879999999989999528998277


Q ss_pred             EECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf             93461899999999888978899999999999772699998201899999985
Q gi|255764463|r  283 YQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILT  335 (337)
Q Consensus       283 YqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~  335 (337)
                      = +|- =+||.......--+....-+.+-..--..||+++=+--.++..+-++
T Consensus       204 G-~SR-Ksfi~~~~~~~~~~rl~gTla~~~~~~~~Ga~ilRvHdV~et~~ai~  254 (257)
T cd00739         204 G-ASR-KSFIGALLGREPKDRDWGTLALSALAAANGADIVRVHDVKATRDALK  254 (257)
T ss_pred             E-CCH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf             5-029-89999874999688428999999999987999999599899998986


No 265
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205   This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=35.36  E-value=26  Score=16.51  Aligned_cols=161  Identities=20%  Similarity=0.278  Sum_probs=99.1

Q ss_pred             CCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCC--------CCCCCCHHH---HHHHHHHHH---HCCCE
Q ss_conf             863288999999999999-888936763302563345544542--------157653799---999999973---01447
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSH--------IIDPDNLIN---EGICAIKKN---IPNIG  125 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~Gse--------A~n~dglv~---rAIr~IK~~---fpdl~  125 (337)
                      |-.-.|.|.+...++.+. +.||+.| |||.=.++ =+.....        +-|++=+++   |-+|.=-..   |..|.
T Consensus        35 Gs~gVt~~~~~~~~~~~~e~~~~P~i-lfPsn~~~-~s~~~Da~f~~svlNS~~~~wI~GkhaqWvr~q~~~~~~~~~~~  112 (242)
T TIGR01768        35 GSQGVTLDKLDQLIEALRERYGVPII-LFPSNLTN-VSRKADALFFPSVLNSDDPYWIIGKHAQWVRAQILAAPKFKKLG  112 (242)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCCCC-HHHCCCEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             77870368899999999740598379-84188742-11106768771143169976453425999999998789887653


Q ss_pred             EEECCCCCHHHCCCCCCCCC---CCC-C-CHHHHHHHHHHHH-------HHHHHCCCCEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             98613327100114310013---654-4-6289999999999-------9999628973524667677999999999877
Q gi|255764463|r  126 IITDVALDPFTIHGHDGILC---DGE-I-VNDETIELISHAA-------VIQADAGADIIAPSEMMDGRVQEIRKKLDSH  193 (337)
Q Consensus       126 vi~DVcLc~YT~hGHcGi~~---~g~-I-dND~Tl~~L~k~A-------l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~  193 (337)
                      =+-.+-.-.|--=||+|-.-   +-+ + .+.+-+-.+..+|       +.|-|||.-  +|.-.-.--|..+|+.+|+.
T Consensus       113 ~~~E~~~~gY~iv~pgg~aa~v~~A~~~P~~k~~~Aa~~~~a~~~~g~~~~YLEagsg--ap~pvpPE~va~vk~v~~~a  190 (242)
T TIGR01768       113 ESLEIIPEGYIIVNPGGAAATVTKAKPIPYDKEDLAAYAALAEEMLGMPIIYLEAGSG--APEPVPPELVAEVKKVLDKA  190 (242)
T ss_pred             HHHEEHHEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHCC
T ss_conf             1340012112787589955885023578877687999999999980996899963787--54797458999999874104


Q ss_pred             CCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf             88577300336664354301016753102446777744315721147889888876640-8987995
Q gi|255764463|r  194 GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLV  259 (337)
Q Consensus       194 g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMV  259 (337)
                      ||..-..|-|                     .-|=|.             +|..+-..| |||+|.|
T Consensus       191 GyGGe~~L~v---------------------GGGIRs-------------~E~A~~~a~AgAD~~Vt  223 (242)
T TIGR01768       191 GYGGEVKLIV---------------------GGGIRS-------------VEKARKLAEAGADVVVT  223 (242)
T ss_pred             CCCCCEEEEE---------------------ECCCCC-------------HHHHHHHHHCCCCEEEE
T ss_conf             7886325784---------------------076478-------------89999995345989998


No 266
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase; InterPro: IPR011995   Orotidine 5'-phosphate decarboxylase (OMPdecase) ,  catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein.   Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme.   This entry represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=35.34  E-value=37  Score=15.53  Aligned_cols=212  Identities=17%  Similarity=0.143  Sum_probs=123.6

Q ss_pred             CCCCCCCCCCCHH---------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCC
Q ss_conf             4888786328899---------99999999998889367633025633455445421576537--999999999730144
Q gi|255764463|r   56 INSMPDVMRMSID---------VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--INEGICAIKKNIPNI  124 (337)
Q Consensus        56 I~SMPGv~R~Sid---------~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--v~rAIr~IK~~fpdl  124 (337)
                      ++.+|...+-+..         -+...+++++++==..+.+| ++.--     -=|.|.+.|+  ..+.|..+|..-|.+
T Consensus        24 ~~~l~~~~~~~~~~~~~~~~A~~~~~Fc~~iiDA~a~~~a~v-KPq~A-----FFE~~G~~G~~~L~evi~~~~~~GPq~   97 (306)
T TIGR02127        24 LELLPEWVKESEARKKKESVAAGLAAFCKRIIDATAEYAAVV-KPQVA-----FFEAFGSEGFKALEEVIAHAKSAGPQL   97 (306)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-CCCCC-----HHHHCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             576225411142222244788999998899998642633144-04600-----111127678999999999974158942


Q ss_pred             EEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             798613327100114310013654462899999999999999628-----973524667677999999999877885773
Q gi|255764463|r  125 GIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG-----ADIIAPSEMMDGRVQEIRKKLDSHGHINVG  199 (337)
Q Consensus       125 ~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG-----aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~  199 (337)
                      .|++|+              +-|  |.+.|-+.++|..+-++++|     +|=|--|==|=.  ++++..|+...-..-+
T Consensus        98 ~V~~D~--------------KRG--DIg~Ta~aYA~~~lg~~~~~~S~~~~DA~TvsPYlG~--dSL~Pfle~~~~~G~g  159 (306)
T TIGR02127        98 LVLADA--------------KRG--DIGSTAEAYAKAYLGHLKADDSPLEADALTVSPYLGL--DSLRPFLEVARANGAG  159 (306)
T ss_pred             EEEECC--------------CCC--CHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHCC--HHHHHHHHHHHHHCCE
T ss_conf             688043--------------137--6777999999998336788988410102451300010--3311568989753896


Q ss_pred             E--ECHHH---------HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEECCCHH--
Q ss_conf             0--03366---------643543010167531024467777443157211478898888766408--98799553114--
Q gi|255764463|r  200 I--MPYVA---------KFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES--ADMLLVKPGLP--  264 (337)
Q Consensus       200 I--msYsa---------KfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG--AD~lMVKPa~~--  264 (337)
                      |  |--++         +=.+..-|-|-+.-||--+ ..||+=||.=. ..-..+-+...| ..|  +++=.|==|..  
T Consensus       160 iFvLv~TSN~~~~~~Q~~~~~~~qGtfGessGsils-Csgr~vy~~va-~~~~~~~~~~~d-~~gPY~~~G~VVGAT~P~  236 (306)
T TIGR02127       160 IFVLVKTSNPGGADLQDLRVSDRQGTFGESSGSILS-CSGRTVYEEVA-ELAGELNESPGD-KSGPYGSVGAVVGATSPE  236 (306)
T ss_pred             EEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEE-CCCCHHHHHHH-HHHHHHHHCCCC-CCCCCCCEEEEEECCCHH
T ss_conf             999985168553788855540256643345563575-07746899999-999998631588-777852114686138868


Q ss_pred             HHHHHHHHHH------H--CCCCEEEEECCHHHHHHHH
Q ss_conf             5899999996------2--4998999934618999999
Q gi|255764463|r  265 YLDVCFRIKE------K--FGLPTFAYQVSGEYAMIKA  294 (337)
Q Consensus       265 yLDii~~~k~------~--~~~P~~aYqVSGEYami~~  294 (337)
                      =|+.++.-++      +  +.+|=+-+|=-++-.-++.
T Consensus       237 ~l~~lr~~~nlsef~p~~~~LvPG~GAQGG~~~~dl~~  274 (306)
T TIGR02127       237 DLKRLREERNLSEFMPTLPFLVPGFGAQGGAEAADLEA  274 (306)
T ss_pred             HHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHH
T ss_conf             99998776434666257714217501138714899987


No 267
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=35.29  E-value=5.5  Score=21.11  Aligned_cols=69  Identities=16%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             HHHHHHHHCCCCCHHHCCCCEE---EECC--CCCEEEC---CCCCC-CCCCCHH-------HHHHHHHHHHHCCCCEEEE
Q ss_conf             8899986347788877331166---6758--9881104---88878-6328899-------9999999999888936763
Q gi|255764463|r   24 NWIREMVREHRLSVSDLILPIF---LTSG--EKTVESI---NSMPD-VMRMSID-------VAVEKIKQVADLGIPAIAI   87 (337)
Q Consensus        24 ~~iR~Lv~Et~Ls~~dLI~PiF---V~eg--~~~k~~I---~SMPG-v~R~Sid-------~L~~eie~~~~lGI~av~L   87 (337)
                      ..+|.++..+.|.+++.=.=+|   +..+  .|.-..+   .+||. +--++++       ..+...-..+..|.-.+.|
T Consensus        28 ~ai~~al~~agl~~~~Id~vi~G~~~~~g~g~n~aR~~al~aGlp~~vp~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvl  107 (386)
T cd00751          28 AVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVV  107 (386)
T ss_pred             HHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999999849898999989999506666566399999997699988865888422168799999997411079977888


Q ss_pred             EECCC
Q ss_conf             30256
Q gi|255764463|r   88 FPNIP   92 (337)
Q Consensus        88 Fp~I~   92 (337)
                      =++++
T Consensus       108 a~GvE  112 (386)
T cd00751         108 AGGVE  112 (386)
T ss_pred             EECCC
T ss_conf             72445


No 268
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase; InterPro: IPR004410 Malonyl CoA-acyl carrier protein transacylase 2.3.1.39 from EC is involved in fatty acid biosynthesis and transfers the malonyl moeity from coenzyme A to acyl-carrier protein.; GO: 0004314 [acyl-carrier-protein] S-malonyltransferase activity, 0006633 fatty acid biosynthetic process.
Probab=35.07  E-value=23  Score=16.93  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=12.3

Q ss_pred             CCEEE-EECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             98999-9346189999999988897889999
Q gi|255764463|r  278 LPTFA-YQVSGEYAMIKAASLQGWINKNDAM  307 (337)
Q Consensus       278 ~P~~a-YqVSGEYami~~a~~~g~~d~~~~~  307 (337)
                      .|.++ =|==|||+-|.+   +|.+|+++++
T Consensus        85 ~P~f~AGHSLGEYsAL~a---AGalDF~~al  112 (295)
T TIGR00128        85 KPDFVAGHSLGEYSALVA---AGALDFETAL  112 (295)
T ss_pred             CCCEEECCCHHHHHHHHH---HHHHHHHHHH
T ss_conf             653462463478999998---5351488899


No 269
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=34.96  E-value=37  Score=15.49  Aligned_cols=41  Identities=27%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999999988893676330256334554-4542157653799999999973014
Q gi|255764463|r   71 VEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIPN  123 (337)
Q Consensus        71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fpd  123 (337)
                      ++|+..+.+-|.--|        +.|++ .|+-..    .-+..||+|++..|.
T Consensus        10 ~~EA~~a~~~GaDII--------DvKnP~~GaLGa----~~p~vi~~i~~~v~~   51 (235)
T pfam04476        10 VEEALEAIEGGADII--------DVKNPAEGSLGA----NFPWVIREIRELTPK   51 (235)
T ss_pred             HHHHHHHHHCCCCEE--------EECCCCCCCCCC----CCHHHHHHHHHHHCC
T ss_conf             999999986799989--------827988888889----999999999998567


No 270
>pfam02979 NHase_alpha Nitrile hydratase, alpha chain.
Probab=34.92  E-value=21  Score=17.14  Aligned_cols=80  Identities=19%  Similarity=0.143  Sum_probs=51.4

Q ss_pred             CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             77999999999877885773003366643543010167531024467777443157211478898888766408987995
Q gi|255764463|r  180 DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV  259 (337)
Q Consensus       180 DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV  259 (337)
                      .-|+.|+++.|-+.|+.+..-+---..+-.+-.||..-|-=-+.+- -|-.--+.=..|...|++|.-.+..+|-.++.|
T Consensus         7 ~~r~~Ale~lLieKGli~~~~id~~ie~~e~~~gP~~GArvVArAW-~Dp~fk~~Ll~D~~aA~~elG~~g~~ge~l~vv   85 (189)
T pfam02979         7 AARVKALEELLIEKGLITPAAVDRIIETYETKVGPRNGARVVARAW-VDPEFKARLLADATAACAELGYDGRQGEHMVAV   85 (189)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCHHHHHHHHHCHHHHHHHCCCCCCCCCCEEEE
T ss_conf             9999999999998599999999999999874249842388999986-699999999978899999849985655646998


Q ss_pred             C
Q ss_conf             5
Q gi|255764463|r  260 K  260 (337)
Q Consensus       260 K  260 (337)
                      .
T Consensus        86 e   86 (189)
T pfam02979        86 E   86 (189)
T ss_pred             E
T ss_conf             3


No 271
>pfam09447 Cnl2_NKP2 Cnl2/NKP2 family protein. This family includes the Cnl2 kinetochore protein.
Probab=34.85  E-value=9.4  Score=19.54  Aligned_cols=30  Identities=30%  Similarity=0.258  Sum_probs=22.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             126655788858563128988999863477
Q gi|255764463|r    5 NAISHKICCHRRMRRNRKSNWIREMVREHR   34 (337)
Q Consensus         5 ~~is~~~~p~~R~RRlR~~~~iR~Lv~Et~   34 (337)
                      +-||-.-|-...|||+|.++.+|.|.+|-.
T Consensus        18 ~iiSLe~F~~lFPr~~~s~P~Ir~lYreLq   47 (67)
T pfam09447        18 DIISLEQFTELFPRRVRSEPQIRTLYRELQ   47 (67)
T ss_pred             CCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             131399999887433543708999999999


No 272
>PRK03705 glycogen debranching enzyme; Provisional
Probab=34.82  E-value=38  Score=15.48  Aligned_cols=92  Identities=20%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHH--HHHHHHHCCCCEEEEEECCCCC----C----------------CC
Q ss_conf             331166675898811048887863288999999--9999998889367633025633----4----------------55
Q gi|255764463|r   40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVE--KIKQVADLGIPAIAIFPNIPMD----L----------------RN   97 (337)
Q Consensus        40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~--eie~~~~lGI~av~LFp~I~~~----~----------------Kd   97 (337)
                      .||=+=|.+=..   .=++.|...|=+...|..  -++.+.+|||++|-|-|+-.-.    .                =-
T Consensus       152 IIYElHVRgFT~---~~p~vp~~~rGTy~gl~~~~~I~yLk~LGVT~VeLLPV~~f~~e~~~~~~gl~NyWGYdp~~yfa  228 (658)
T PRK03705        152 VIYEAHVKGLTY---LHPEIPVEIRGTYKALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA  228 (658)
T ss_pred             EEEEEECCCCCC---CCCCCCHHHCCCHHHHCCHHHHHHHHHCCCCEEEEECCEECCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf             799982245312---38998432055355433828889999809877999898666778502103776776766432567


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH
Q ss_conf             4454215765379999999997301-447986133271
Q gi|255764463|r   98 NTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP  134 (337)
Q Consensus        98 ~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~  134 (337)
                      ++|+.|-++++.+..-=..+|.--. .|.||-||-.-.
T Consensus       229 Pe~~Yas~p~~~~~Efk~mV~~lH~~GI~VIlDVVyNH  266 (658)
T PRK03705        229 LHPAYASSPETALDEFRDAVKALHKAGIEVILDIVLNH  266 (658)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             86534799861889999999999987998999751366


No 273
>PRK09051 beta-ketothiolase; Provisional
Probab=34.39  E-value=4  Score=22.04  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHHHHCCC
Q ss_conf             466767799999999987788
Q gi|255764463|r  175 PSEMMDGRVQEIRKKLDSHGH  195 (337)
Q Consensus       175 PSdMMDGrV~aIR~~Ld~~g~  195 (337)
                      |..|--|-+.+||++|+.+|.
T Consensus       287 p~~~~~~p~~A~~~~L~ragl  307 (394)
T PRK09051        287 PEYMGIGPVPATQKALERAGL  307 (394)
T ss_pred             HHHHCCCHHHHHHHHHHHCCC
T ss_conf             677403899999999998399


No 274
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=34.39  E-value=7.6  Score=20.17  Aligned_cols=138  Identities=18%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             CCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCEEEECC
Q ss_conf             8786328899999----999999988893676330256334554454215765----37999999999730144798613
Q gi|255764463|r   59 MPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD----NLINEGICAIKKNIPNIGIITDV  130 (337)
Q Consensus        59 MPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d----glv~rAIr~IK~~fpdl~vi~DV  130 (337)
                      .=|+.|--.|...    +...++++.|.=.=-+.|+.-+.+|.+.  ..++.|    ......+.++|-.|..-+.+   
T Consensus       173 ~~gisRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvPv~~~~~~g~~--~~~~~De~~R~tt~e~La~L~p~f~~~Gtv---  247 (400)
T PRK13359        173 DYNISRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDP--VVVSRDEHPRETTLEALAKLKGVVRPDGTV---  247 (400)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCE--EEEECCCCCCCCCHHHHHCCCCCCCCCCCE---
T ss_conf             869899999999999999999987659840258867752677863--788068786667766663268753456856---


Q ss_pred             CCCHHHCCCCCCCCCCCC----CCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCE
Q ss_conf             327100114310013654----4628999999999----9999962897352466767799999999987788--57730
Q gi|255764463|r  131 ALDPFTIHGHDGILCDGE----IVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGI  200 (337)
Q Consensus       131 cLc~YT~hGHcGi~~~g~----IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~I  200 (337)
                            +-|.+--+.||-    +-+.+..+.|.-.    -+.++.+|+|   |..|--|-|.|+|++|+.+|.  .|+-+
T Consensus       248 ------TAgNsS~~~DGAAavll~s~~~a~~~gl~p~ari~~~a~~g~d---P~~m~~gp~~A~~k~L~~agl~~~Did~  318 (400)
T PRK13359        248 ------TAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVE---PRVMGIGPAPATQKLLARLGMTLDQFDV  318 (400)
T ss_pred             ------ECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC---HHHHHHCHHHHHHHHHHHCCCCCCCCCE
T ss_conf             ------3543785432678899865999998799805999988999828---7885336999999999976998456877


Q ss_pred             ECHHHHHHHH
Q ss_conf             0336664354
Q gi|255764463|r  201 MPYVAKFNSS  210 (337)
Q Consensus       201 msYsaKfaS~  210 (337)
                      .----=||+.
T Consensus       319 ~EinEAFA~q  328 (400)
T PRK13359        319 IELNEAFASQ  328 (400)
T ss_pred             EEEEHHHHHH
T ss_conf             7860466888


No 275
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.25  E-value=38  Score=15.42  Aligned_cols=31  Identities=16%  Similarity=0.197  Sum_probs=13.7

Q ss_pred             HHCCCCEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             96289735246676779999999998778857
Q gi|255764463|r  166 ADAGADIIAPSEMMDGRVQEIRKKLDSHGHIN  197 (337)
Q Consensus       166 A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~  197 (337)
                      ..+|+|+|-.....+.-+..+|+ +.+.|+..
T Consensus       189 ~~~~pD~v~~~~~~~~~~~~~kq-~~~~G~~~  219 (312)
T cd06346         189 AAGGPDALVVIGYPETGSGILRS-AYEQGLFD  219 (312)
T ss_pred             HHCCCCEEEEECCCHHHHHHHHH-HHHCCCCC
T ss_conf             86699999994673479999999-99759999


No 276
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=34.22  E-value=38  Score=15.42  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf             48887863288999999999999888936763302563345544542157653799999999973014479861332710
Q gi|255764463|r   56 INSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF  135 (337)
Q Consensus        56 I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y  135 (337)
                      ++.-|.-|++.++.+.+.+.+...-+.+  ++|-.-| +  +++|+- ++.     ..++.|.+..+++.|+.|=|--+|
T Consensus       140 v~~~~~~f~~d~~~~~~~i~~~~~~~~k--lv~l~nP-N--NPTG~~-~~~-----~~l~~l~~~~~~~~vvvDEaY~ef  208 (369)
T PRK02610        140 VGRDPENFEIDLAAAQTAIEQTQNPPVR--VVFVVHP-N--SPTGNP-LTA-----AELEWLRSLPEDILVVIDEAYFEF  208 (369)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHCCCCCCE--EEEECCC-C--CCCCCC-CCH-----HHHHHHHHCCCCEEEEECCCEEEC
T ss_conf             4576436656989999999855598823--9997899-6--972656-799-----999999846997699833676021


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEECCCC
Q ss_conf             011431001365446289999999999999962897---3524667
Q gi|255764463|r  136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGAD---IIAPSEM  178 (337)
Q Consensus       136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaD---ivAPSdM  178 (337)
                      +.+..-..+.+.  .|=   -++.-.+.+|+-||.-   .||+.+-
T Consensus       209 ~~~s~~~~~~~~--~Nl---ivlrTfSK~~glaGlRlGy~ia~~~~  249 (369)
T PRK02610        209 SQTTLVPELAQH--PNW---VILRTFSKAFRLAAHRVGYAIGHPEL  249 (369)
T ss_pred             CCCCCCHHHHCC--CCE---EEEECCCHHHCCCCCCCEECCCCHHH
T ss_conf             555321024317--875---89852634406766551311179999


No 277
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697   Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP:  ADP + phosphoenolpyruvate = ATP + pyruvate    The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues.   PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver.   The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain.    ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=33.95  E-value=39  Score=15.39  Aligned_cols=37  Identities=30%  Similarity=0.515  Sum_probs=18.5

Q ss_pred             HHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCCEEC
Q ss_conf             9628973524667677-999999999877885773003
Q gi|255764463|r  166 ADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       166 A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      ++-|.|+||.|=-=-+ -|..+|+.|.+.|-.++.|-|
T Consensus       205 ~~~gvD~va~SFvR~~~DV~~~R~~L~~~G~~~~~IIa  242 (513)
T TIGR01064       205 VEQGVDFVAASFVRTAEDVEEVREVLEEKGGKDVKIIA  242 (513)
T ss_pred             HHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             87297889972788875699999999970889864887


No 278
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720   Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .    This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=33.86  E-value=39  Score=15.38  Aligned_cols=79  Identities=18%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             CCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             3455-445421576537999999999730144798613327100114310013654462899999999999999628973
Q gi|255764463|r   94 DLRN-NTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI  172 (337)
Q Consensus        94 ~~Kd-~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi  172 (337)
                      +-|. ---+=-.||+ +..+-++++|+.... =|++=.                     -.-+.-..|+|.+.-+||||-
T Consensus       133 hvK~G~G~~iG~dP~-l~~~vv~avK~~~d~-Pv~aKL---------------------sPNV~Di~eiA~a~eeaGaDG  189 (308)
T TIGR01037       133 HVKGGGGIEIGQDPE-LSADVVKAVKDKVDV-PVFAKL---------------------SPNVTDITEIAKAAEEAGADG  189 (308)
T ss_pred             CCCCCCCCCCCCCHH-HHHHHHHHHHCCCCC-CEEEEC---------------------CCCHHHHHHHHHHHHHCCCCE
T ss_conf             434234655477877-999999998300078-657864---------------------865668999988875327761


Q ss_pred             EECCCCCC-CHHHHHHHHHHHCCCCCCCEECH
Q ss_conf             52466767-79999999998778857730033
Q gi|255764463|r  173 IAPSEMMD-GRVQEIRKKLDSHGHINVGIMPY  203 (337)
Q Consensus       173 vAPSdMMD-GrV~aIR~~Ld~~g~~~~~ImsY  203 (337)
                      +.-+-..- |.=--|+        +.-||||=
T Consensus       190 lt~INTl~PGMkIDI~--------~~kPiLaN  213 (308)
T TIGR01037       190 LTLINTLRPGMKIDIK--------AKKPILAN  213 (308)
T ss_pred             EEEEHHHHHHHHHHHH--------CCCCCCEE
T ss_conf             6400120346777342--------07870000


No 279
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.85  E-value=37  Score=15.56  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHCCCCCCCEECHH---------HHHHHHHHCCHHHHH
Q ss_conf             9999999987788577300336---------664354301016753
Q gi|255764463|r  183 VQEIRKKLDSHGHINVGIMPYV---------AKFNSSFYGPYRDAI  219 (337)
Q Consensus       183 V~aIR~~Ld~~g~~~~~ImsYs---------aKfaS~fYgPFRdA~  219 (337)
                      +.-+|++|+.+||.+|++.|-+         -||.-+|+=-|+-|+
T Consensus        90 i~~~rkaLk~aG~~~V~visLn~e~~~k~~G~~~~~~~~i~~~~ai  135 (420)
T COG3581          90 IELLRKALKDAGFRDVPVISLNSENLEKEPGFKFTVKFLIRLMLAI  135 (420)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9999999997599877579950565545788411462999999999


No 280
>PRK05211 consensus
Probab=33.82  E-value=39  Score=15.37  Aligned_cols=201  Identities=20%  Similarity=0.198  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC
Q ss_conf             99999999999988893676330256334554454215765379999999997301447986133271001143100136
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD  146 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~  146 (337)
                      +..-+..++...+.|..-+.+. -+...+         +....-...|+.|.+++          ..|.|-        .
T Consensus        20 ~gDP~~~ak~~~~~gadelhiv-Dld~a~---------~g~~~n~~~I~~i~~~~----------~~Pl~v--------G   71 (248)
T PRK05211         20 IGDIVPLAKRYAEEGADELVFY-DITASS---------DGRVVDKSWVSRVAEVI----------DIPFCV--------A   71 (248)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEE-ECCCCC---------CCCCCHHHHHHHHHHHC----------CCCEEE--------E
T ss_conf             7899999999998699989999-786776---------78721499999999767----------985896--------2


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCC
Q ss_conf             54462899999999999999628973524667677999999999877885773003366643543010167531024467
Q gi|255764463|r  147 GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLK  226 (337)
Q Consensus       147 g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~  226 (337)
                      |-|-+-++++       .+-++|||=|.-...-=-.-..+++....-|-+.+ +.|--+++               ....
T Consensus        72 GGIrs~~~i~-------~ll~~GadkViigs~a~~np~li~~~~~~fG~q~I-vvsiD~~~---------------~~~~  128 (248)
T PRK05211         72 GGIKSVEDAR-------EILSFGADKISINSPALADPTLITRLADRFGVQCI-VVGIDSWF---------------DAET  128 (248)
T ss_pred             CCCCCHHHHH-------HHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCCEE-EEEEEEEC---------------CCCC
T ss_conf             7801389999-------99987998899897676196189999985799369-99997102---------------5557


Q ss_pred             CCCCCCCCCCC------HHHHHHHHHHHHHHCCCCEEEE----CCC---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             77744315721------1478898888766408987995----531---1458999999962499899993461899999
Q gi|255764463|r  227 GDKKTYYLDPA------NVQEAIREASIDIQESADMLLV----KPG---LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIK  293 (337)
Q Consensus       227 gdr~sYQmd~~------n~~eA~~e~~~D~~EGAD~lMV----KPa---~~yLDii~~~k~~~~~P~~aYqVSGEYami~  293 (337)
                      +.-..|+..-.      ...+.+--+..-++.||--+++    +-|   .+-|++++.+++.+++|+.|   ||      
T Consensus       129 ~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~IdrDG~~~G~dl~l~~~i~~~~~iPvIa---sG------  199 (248)
T PRK05211        129 GKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNMMNQDGVRNGYDLAQLKKVRAICHVPLIA---SG------  199 (248)
T ss_pred             CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC------
T ss_conf             857999825865653047736999999999759866999898789972788999999999746999999---88------


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE--------CHHHHHHHHHHC
Q ss_conf             9998889788999999999997726999982--------018999999850
Q gi|255764463|r  294 AASLQGWINKNDAMMESLLAFKRAGCDGIFT--------YFAMEAARILTH  336 (337)
Q Consensus       294 ~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit--------Y~A~~~a~~L~~  336 (337)
                           |.-+.++. .|   .++-+|++.++.        +--+++.++|++
T Consensus       200 -----Gv~s~~di-~~---~~~~~~~~gvi~gs~~~~~~i~l~e~k~~L~~  241 (248)
T PRK05211        200 -----GAGTMEHF-LE---AFRDADVDGALAASVFHKQIINIGELKQYLAA  241 (248)
T ss_pred             -----CCCCHHHH-HH---HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             -----88999999-99---99867984133048888899999999999998


No 281
>PRK10651 transcriptional regulator NarL; Provisional
Probab=33.79  E-value=39  Score=15.37  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC-----CCC----CCCCHHHHHHHHHHHHHHHHHCCCCE-EECCCCCCC
Q ss_conf             99999997301447986133271001143100-----136----54462899999999999999628973-524667677
Q gi|255764463|r  112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGI-----LCD----GEIVNDETIELISHAAVIQADAGADI-IAPSEMMDG  181 (337)
Q Consensus       112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi-----~~~----g~IdND~Tl~~L~k~Al~~A~AGaDi-vAPSdMMDG  181 (337)
                      .++..++..-||++|+ |+.|-.     -+|+     ++.    ..|.- -|-..-.......-++||+- |.=+.-.+-
T Consensus        43 ea~~~~~~~~pDlvll-Dl~lp~-----~~G~~~~~~l~~~~~~~~iiv-lt~~~~~~~~~~al~~Ga~gyl~K~~~~~~  115 (216)
T PRK10651         43 QGIELAESLDPDLILL-DLNMPG-----MNGLETLDKLREKSLSGRIVV-FSVSNHEEDVVTALKRGADGYLLKDMEPED  115 (216)
T ss_pred             HHHHHHHHCCCCEEEE-ECCCCC-----CCCCCCCCCCCCCCCCCCEEE-EECCCCHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             9999987079999999-599999-----888764232334578874676-305541889999996698789837899999


Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999987788
Q gi|255764463|r  182 RVQEIRKKLDSHGH  195 (337)
Q Consensus       182 rV~aIR~~Ld~~g~  195 (337)
                      -+.+||.++...-+
T Consensus       116 L~~ai~~v~~g~~~  129 (216)
T PRK10651        116 LLKALHQAAAGEMV  129 (216)
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             99999999859971


No 282
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=33.62  E-value=16  Score=18.08  Aligned_cols=192  Identities=19%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE-----EECCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf             999999999999888936763-----30256334554454-----21576537999999999730144798613327100
Q gi|255764463|r   67 IDVAVEKIKQVADLGIPAIAI-----FPNIPMDLRNNTGS-----HIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT  136 (337)
Q Consensus        67 id~L~~eie~~~~lGI~av~L-----Fp~I~~~~Kd~~Gs-----eA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT  136 (337)
                      ....-++.+.+.+.||..|-|     +|.-+ ..+.+.++     |-.+=-|  +..+|+--+++++..|++|..  -| 
T Consensus        77 ~r~~~~h~~~l~e~~I~~iDlVvvNLYPF~~-tv~~~~~~~~e~vEnIDIGG--ptmlRaAAKN~~~V~V~~dp~--Dy-  150 (515)
T COG0138          77 RRDKDEHMAALEEHGIEPIDLVVVNLYPFEE-TVAKPGVTLEEAVENIDIGG--PTMLRAAAKNHKDVTVVVDPA--DY-  150 (515)
T ss_pred             CCCCHHHHHHHHHCCCCCCCEEEECCCCHHH-HCCCCCCCHHHHHHCCCCCC--HHHHHHHHHCCCCEEEEECCH--HH-
T ss_conf             0365778999997598775479984798254-21679998898875655676--177687663258705986601--46-


Q ss_pred             CCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCC--------CEEC
Q ss_conf             114310013---65446289999999999999962897352466767799999999987---788577--------3003
Q gi|255764463|r  137 IHGHDGILC---DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS---HGHINV--------GIMP  202 (337)
Q Consensus       137 ~hGHcGi~~---~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~---~g~~~~--------~Ims  202 (337)
                          ..++.   .+.-+..++-..|+--|-.|-.+          -|   .+|++-|-.   ..|...        .-|-
T Consensus       151 ----~~vl~~l~~~~~~~~~~R~~lA~kaF~hTA~----------YD---aaI~~~~~~~~~~~fp~~~~~~~~~~~~lR  213 (515)
T COG0138         151 ----AAVLEELKANGELSLATRKRLAAKAFEHTAA----------YD---AAIANYFSELLGGEFPEQLNLSFTKKQDLR  213 (515)
T ss_pred             ----HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH----------HH---HHHHHHHHHHCCCCCCHHEECCCCCCEEEE
T ss_conf             ----8999998547887789999999999998766----------69---999999975311336411102432000100


Q ss_pred             HHHHH--HHHHHC--CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCHHH-----HHHHHHH
Q ss_conf             36664--354301--016753102446777744315721147889888876640-8987995531145-----8999999
Q gi|255764463|r  203 YVAKF--NSSFYG--PYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLVKPGLPY-----LDVCFRI  272 (337)
Q Consensus       203 YsaKf--aS~fYg--PFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~y-----LDii~~~  272 (337)
                      |.---  ..+||-  ...-.+-.+.+++|---||- |+.. -+|-.+...+.++ |.-.+.||-+-|+     -++...-
T Consensus       214 YGENPHQ~aa~Y~~~~~~~~va~a~qL~GK~lSYN-Ni~D-aDaA~~~v~ef~~~~pa~~ivKH~NPcGvA~~~~i~~Ay  291 (515)
T COG0138         214 YGENPHQSAAFYRDGNAKGGVATAKQLQGKELSYN-NIAD-ADAAWELVKEFDEPGPACAIVKHANPCGVAVGDTIAEAY  291 (515)
T ss_pred             CCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCC-CHHH-HHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCHHHHHHH
T ss_conf             57897778747841787876034787559725425-2553-799999998557767618998437874010280599999


Q ss_pred             HHHC-CCCEEEE
Q ss_conf             9624-9989999
Q gi|255764463|r  273 KEKF-GLPTFAY  283 (337)
Q Consensus       273 k~~~-~~P~~aY  283 (337)
                      +..+ .=|+-+|
T Consensus       292 ~~A~~~D~~SaF  303 (515)
T COG0138         292 KRAYEADPTSAF  303 (515)
T ss_pred             HHHHCCCCCCCC
T ss_conf             999707972234


No 283
>PRK00035 hemH ferrochelatase; Reviewed
Probab=33.59  E-value=31  Score=16.05  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             328899999999999988893676330256334554454
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS  101 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs  101 (337)
                      +||+--.+.+.++++.+.|+..+++||--|.......||
T Consensus        99 mry~~P~i~~~l~~l~~~g~~~ii~lPlyPqyS~sTtgs  137 (325)
T PRK00035         99 MRYGEPSIEDAVEQLKADGVDRIVVLPLYPQYSYSTTAS  137 (325)
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf             546899778999999857985599997751141767759


No 284
>KOG3670 consensus
Probab=33.27  E-value=27  Score=16.41  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCCCC----HHHHHHHHHHHHHCC-CEEEE
Q ss_conf             878632889999999999998889367633025633455445-42157653----799999999973014-47986
Q gi|255764463|r   59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG-SHIIDPDN----LINEGICAIKKNIPN-IGIIT  128 (337)
Q Consensus        59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G-seA~n~dg----lv~rAIr~IK~~fpd-l~vi~  128 (337)
                      ||++-|-=++.+-+..+-.++.-=+-|-||-+..+-.-+.++ ++...+..    -+-+|++.|++..|. ++++.
T Consensus       162 lp~QAr~Lv~rik~~~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~nvPR~iV~lv  237 (397)
T KOG3670         162 LPDQARDLVSRIKKDKEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRDNVPRTIVSLV  237 (397)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             6799999999997633755446537999996364244324698788870567888999999999864970179983


No 285
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=33.27  E-value=40  Score=15.31  Aligned_cols=146  Identities=16%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf             89999999999999962897352466767799999999987788577300336664354301016753102446777744
Q gi|255764463|r  152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKT  231 (337)
Q Consensus       152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~s  231 (337)
                      --|-+.+++++-..+..|.|+|-=-                +...+-+-+.+-..+.-.     -+|++-+-.-.|.++-
T Consensus       179 GLsp~~~a~v~ye~~~GGvDfIKDD----------------E~l~~~pf~p~eeRv~~v-----~eai~ra~~eTGe~k~  237 (477)
T CHL00040        179 GLSAKNYGRAVYECLRGGLDFTKDD----------------ENVNSQPFMRWRDRFLFC-----AEAIYKAQAETGEIKG  237 (477)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEECC----------------CCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCEEE
T ss_conf             9997999999999970487452076----------------556798888789999999-----9999999997698018


Q ss_pred             CCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHH
Q ss_conf             31572114--7889888876640898799553114589999999---624998999934618999999998889788999
Q gi|255764463|r  232 YYLDPANV--QEAIREASIDIQESADMLLVKPGLPYLDVCFRIK---EKFGLPTFAYQVSGEYAMIKAASLQGWINKNDA  306 (337)
Q Consensus       232 YQmd~~n~--~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k---~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~  306 (337)
                      |-+|..+.  +|-++-++.-.+.|+.++||---..=...++.++   +...+|+.+ |=.|- +++--.-..| ++.. +
T Consensus       238 y~~NiTa~~~eeM~~RAe~a~e~G~~~vMvd~~t~G~~Al~~La~~~Rd~~l~iH~-HRAgh-ga~~R~p~hG-Is~r-V  313 (477)
T CHL00040        238 HYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHI-HRAMH-AVIDRQKNHG-IHFR-V  313 (477)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCCH-HHCCCCCCCC-CCHH-H
T ss_conf             99961479899999999999970996799985200057899999976543955884-03520-2215787666-2199-9


Q ss_pred             HHHHHHHHHHHCCCEEEEC
Q ss_conf             9999999977269999820
Q gi|255764463|r  307 MMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       307 ~~E~l~~~kRAGAd~IitY  325 (337)
                      +   ..-.+=||+|.|.+-
T Consensus       314 l---aKl~RLaG~DhiH~G  329 (477)
T CHL00040        314 L---AKALRMSGGDHIHAG  329 (477)
T ss_pred             H---HHHHHHCCCCEEECC
T ss_conf             9---999987288810116


No 286
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.97  E-value=40  Score=15.28  Aligned_cols=217  Identities=15%  Similarity=0.170  Sum_probs=111.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             86328899999999999988893676330256334554454215765379---999999997301447986133271001
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI---NEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv---~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      |..+||++..++   .+.++|-.+|=|+...|..         +.++ +-   .+.|+.+.+.. +|-|   +|++|.|.
T Consensus         9 ~~~~~ple~a~~---~aa~lGydgVEi~~~~ph~---------~~~~-~~~~~~~~ik~l~~~~-gl~v---~~~~p~~~   71 (276)
T PRK09856          9 GHQRLPIEHAFR---DASELGYDGIEIWGGRPHA---------FAPD-LKAGGIKQIKALAQTY-QMPI---IGYTPETN   71 (276)
T ss_pred             CCCCCCHHHHHH---HHHHHCCCEEEECCCCCCC---------CCCC-CCHHHHHHHHHHHHHC-CCEE---EEECCCCC
T ss_conf             888999999999---9998499989973787654---------6765-4655799999999980-9868---99553213


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC---CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHC
Q ss_conf             143100136544628999999999999996289735-246---6767799999999987788577300336664354301
Q gi|255764463|r  138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADII-APS---EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYG  213 (337)
Q Consensus       138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS---dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYg  213 (337)
                      -.+=.+...+...-..+++.+.+.--.-++=||+.| -.|   .-..+.=.+-+.                  ++.+   
T Consensus        72 ~~~~~l~~~d~~~R~~~i~~~k~~id~A~~Lga~~v~v~~~~~~~~~~~~~~w~~------------------~~e~---  130 (276)
T PRK09856         72 GYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGR------------------LAEN---  130 (276)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH------------------HHHH---
T ss_conf             7765336798789899999999999999984998499936877788897999999------------------9999---


Q ss_pred             CHHHHHHCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC------CHHHHHHHHHHHHHCCCCEE
Q ss_conf             01675310244677------7744315721147889888876640898799553------11458999999962499899
Q gi|255764463|r  214 PYRDAISTRDLLKG------DKKTYYLDPANVQEAIREASIDIQESADMLLVKP------GLPYLDVCFRIKEKFGLPTF  281 (337)
Q Consensus       214 PFRdA~~S~p~~~g------dr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP------a~~yLDii~~~k~~~~~P~~  281 (337)
                       ||+.+.-+... |      .-..|+.+.-|..+-+.+....+....--+|+--      +.+..|.++.+++.    +.
T Consensus       131 -l~~l~~~A~~~-Gv~l~lE~l~~~e~~li~~~~~~~~~~~~v~~~~~~~~lD~~h~~~~~~~~~~~~~~~g~~----l~  204 (276)
T PRK09856        131 -LSELCEYAENI-GMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDK----LR  204 (276)
T ss_pred             -HHHHHHHHHHC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCHHHHHHHHCCC----EE
T ss_conf             -99999999973-9989995176111420068999999998579986489985413755389999999985887----46


Q ss_pred             EEECCHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             9934618--9999999988897889999999999977269999820
Q gi|255764463|r  282 AYQVSGE--YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       282 aYqVSGE--Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      -.|+..-  -.--+..--.|-+|.+    |.+..+++.|=+.-+|.
T Consensus       205 HvHi~D~~g~~d~hl~pG~G~~d~~----~il~~L~~~gY~G~vsv  246 (276)
T PRK09856        205 HLHIVDSDGASDTHYIPGEGKMPLR----ELMRDIIDRGYEGYCTV  246 (276)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCHH----HHHHHHHHCCCCCEEEE
T ss_conf             9987679998667737999877889----99999998599815999


No 287
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.88  E-value=40  Score=15.27  Aligned_cols=126  Identities=20%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             1166675898811048887863288999---9999999998889367633025633455445421576537999999999
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSIDV---AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK  118 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~---L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK  118 (337)
                      .|++|-=        .-=+|-|.||-++   +.+.++.+.++|+..| .||...++.            .+=..+.+.+-
T Consensus        52 iPV~vMI--------RPR~GdF~Ys~~E~~~M~~dI~~~~~~Ga~Gv-V~G~L~~dg------------~iD~~~~~~Li  110 (248)
T PRK11572         52 IPVHPII--------RPRGGDFCYSDGEFAAMLEDIRTVRELGFPGL-VTGVLDVDG------------HVDMPRMEKIM  110 (248)
T ss_pred             CCEEEEE--------EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEEECCCC------------CCCHHHHHHHH
T ss_conf             9738999--------42699886798999999999999998699967-996688999------------84999999999


Q ss_pred             HHHCCCEE----EECCCCCHHH------CCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCHH
Q ss_conf             73014479----8613327100------114310013654----46289999999999999962897-352466767799
Q gi|255764463|r  119 KNIPNIGI----ITDVALDPFT------IHGHDGILCDGE----IVNDETIELISHAAVIQADAGAD-IIAPSEMMDGRV  183 (337)
Q Consensus       119 ~~fpdl~v----i~DVcLc~YT------~hGHcGi~~~g~----IdND~Tl~~L~k~Al~~A~AGaD-ivAPSdMMDGrV  183 (337)
                      +..+.+-+    .-|+|-+|+.      +.|-+-|+.-|.    ++.-++|..|.++      ++-. |.+=+.--   .
T Consensus       111 ~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~~~~A~~G~~~L~~L~~~------a~~~iIm~GgGV~---~  181 (248)
T PRK11572        111 AAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILTSGQQSDAEQGLSLIMELIAQ------GDAPIIMAGAGVR---A  181 (248)
T ss_pred             HHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH------CCCCEEEECCCCC---H
T ss_conf             974898079862022149999999999975999898899978777889999999984------4996898789989---9


Q ss_pred             HHHHHHHHHCCCCCC
Q ss_conf             999999987788577
Q gi|255764463|r  184 QEIRKKLDSHGHINV  198 (337)
Q Consensus       184 ~aIR~~Ld~~g~~~~  198 (337)
                      ..+.+-++ .|+..+
T Consensus       182 ~Ni~~~~~-tG~~ei  195 (248)
T PRK11572        182 ENLQKFLD-AGVREV  195 (248)
T ss_pred             HHHHHHHH-CCCCEE
T ss_conf             99999997-597789


No 288
>PRK09989 hypothetical protein; Provisional
Probab=32.84  E-value=40  Score=15.27  Aligned_cols=18  Identities=17%  Similarity=0.366  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHCCCCEEEE
Q ss_conf             999999999888936763
Q gi|255764463|r   70 AVEKIKQVADLGIPAIAI   87 (337)
Q Consensus        70 L~~eie~~~~lGI~av~L   87 (337)
                      +++.++.+.+.|-.+|=+
T Consensus        17 ~~dR~~aAa~aGF~aVE~   34 (258)
T PRK09989         17 FIERFAAARKAGFDAVEF   34 (258)
T ss_pred             HHHHHHHHHHCCCCEEEE
T ss_conf             999999999809999997


No 289
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=32.47  E-value=41  Score=15.23  Aligned_cols=126  Identities=17%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             1166675898811048887863288999---9999999998889367633025633455445421576537999999999
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSIDV---AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK  118 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~---L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK  118 (337)
                      .|++|.=..        =+|-|-||-++   +.+.++.+.++|+..| .||...++..       .|     ..+++.+.
T Consensus        51 ipv~vMIRP--------R~G~F~Ys~~E~~~M~~dI~~~~~~G~~Gv-V~G~L~~d~~-------iD-----~~~~~~li  109 (202)
T pfam03932        51 IPVYVMIRP--------RGGDFVYSDHELKAMLEDILKAVELGAPGV-VLGALTADGE-------ID-----TKRMEKLI  109 (202)
T ss_pred             CCEEEEEEC--------CCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEEECCCCC-------CC-----HHHHHHHH
T ss_conf             974999842--------799886498999999999999998698978-9988889998-------29-----99999999


Q ss_pred             HHHCCCEEEE----CCCCCHHH------CCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf             7301447986----13327100------114310013654----462899999999999999628973524667677999
Q gi|255764463|r  119 KNIPNIGIIT----DVALDPFT------IHGHDGILCDGE----IVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ  184 (337)
Q Consensus       119 ~~fpdl~vi~----DVcLc~YT------~hGHcGi~~~g~----IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~  184 (337)
                      +..+.+-+.-    |.|-+++.      ..|-+.|+.-|.    .++-+++..|.++    |...-.|++-+.--..-+ 
T Consensus       110 ~~a~~l~~TFHRAfD~~~d~~~al~~L~~lG~~rILTSGg~~~a~~g~~~L~~l~~~----a~~~i~Im~GgGI~~~N~-  184 (202)
T pfam03932       110 EAAGGLGVTFHRAFDMCPDPEEALEQLIELGCERVLTSGGPLSALEGLEKLASLVAQ----AGGRISIMAGAGVNAENI-  184 (202)
T ss_pred             HHHCCCCEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCHHHH-
T ss_conf             974688559862043059999999999975998787579978766749999999996----599849995799899999-


Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999987788
Q gi|255764463|r  185 EIRKKLDSHGH  195 (337)
Q Consensus       185 aIR~~Ld~~g~  195 (337)
                        .+-++..|+
T Consensus       185 --~~l~~~~g~  193 (202)
T pfam03932       185 --AELRQLTGV  193 (202)
T ss_pred             --HHHHHHHCC
T ss_conf             --999997199


No 290
>PRK07124 consensus
Probab=32.39  E-value=6.1  Score=20.80  Aligned_cols=69  Identities=13%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             HHHHHHHHCCCCCHHHCCCCEEEEC----C--CCCEEEC---CCCC-CCCCCCHHH-------HHHHHHHHHHCCCCEEE
Q ss_conf             8899986347788877331166675----8--9881104---8887-863288999-------99999999988893676
Q gi|255764463|r   24 NWIREMVREHRLSVSDLILPIFLTS----G--EKTVESI---NSMP-DVMRMSIDV-------AVEKIKQVADLGIPAIA   86 (337)
Q Consensus        24 ~~iR~Lv~Et~Ls~~dLI~PiFV~e----g--~~~k~~I---~SMP-Gv~R~Sid~-------L~~eie~~~~lGI~av~   86 (337)
                      ..++.++..+.|.+++ |-=+++-.    |  .|.-..+   .+|| ++--++++.       .+...-..+..|---+.
T Consensus        32 ~ai~~al~~~~i~~~~-Id~vi~G~v~~~g~g~n~ar~~al~aGlp~~iP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvv  110 (402)
T PRK07124         32 VAIKGALEQAKVSPEA-IDEVIVGNVVSAGQGMGPGRQAAIFAGIPEEVPAYSLNMVCGSGMKTVMDAVSHIKAGDAEVV  110 (402)
T ss_pred             HHHHHHHHHCCCCHHH-CCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             9999999983989899-998999934755556679999999769998885699725778999999999999867997678


Q ss_pred             EEECCCC
Q ss_conf             3302563
Q gi|255764463|r   87 IFPNIPM   93 (337)
Q Consensus        87 LFp~I~~   93 (337)
                      |=+++++
T Consensus       111 lagGvEs  117 (402)
T PRK07124        111 VAAGVEV  117 (402)
T ss_pred             EECCEEC
T ss_conf             9655101


No 291
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.  Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate.  These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=32.02  E-value=42  Score=15.18  Aligned_cols=221  Identities=20%  Similarity=0.225  Sum_probs=97.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf             86328899999999999988893676330256334554454215765---379999999997301447986133271001
Q gi|255764463|r   61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD---NLINEGICAIKKNIPNIGIITDVALDPFTI  137 (337)
Q Consensus        61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d---glv~rAIr~IK~~fpdl~vi~DVcLc~YT~  137 (337)
                      |-...+.+.+++.+++.++-|-.-+=+= +  ++  +.-|+.-.+++   .-+-..|+.|++. +++.|    ++|.|..
T Consensus        17 gg~~~~~~~a~~~a~~~i~~GAdiIDIG-~--eS--TrPg~~~i~~~eE~~Rl~pvl~~i~~~-~~v~i----SIDT~~~   86 (258)
T cd00423          17 GGKFLSLDKALEHARRMVEEGADIIDIG-G--ES--TRPGAEPVSVEEELERVIPVLRALAGE-PDVPI----SVDTFNA   86 (258)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEC-C--CC--CCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEE----EEECCCH
T ss_conf             8767899999999999998799999979-8--77--899997477788888850056887427-99609----9979888


Q ss_pred             CCCCCCCCCC-CCCHHHHHHHH-HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf             1431001365-44628999999-999999996289735246676779999999998778857730033666435430101
Q gi|255764463|r  138 HGHDGILCDG-EIVNDETIELI-SHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY  215 (337)
Q Consensus       138 hGHcGi~~~g-~IdND~Tl~~L-~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF  215 (337)
                      .=----+..| .|.||-|--.. .++.-..|+.+|-+|.--  |.|                                  
T Consensus        87 ~Va~~al~~G~~iINDVsg~~~d~~m~~~va~~~~~~ilmH--~~~----------------------------------  130 (258)
T cd00423          87 EVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMH--MDG----------------------------------  130 (258)
T ss_pred             HHHHHHHHCCCCEEECCHHHHCCHHHHHHHHHCCCCEEEEE--CCC----------------------------------
T ss_conf             99999998599868240031065579999997499889830--578----------------------------------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHCCC--CEEEECCCHH-------HHHHHHHHHHH---CCCCEEE
Q ss_conf             675310244677774431572114788988-887664089--8799553114-------58999999962---4998999
Q gi|255764463|r  216 RDAISTRDLLKGDKKTYYLDPANVQEAIRE-ASIDIQESA--DMLLVKPGLP-------YLDVCFRIKEK---FGLPTFA  282 (337)
Q Consensus       216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e-~~~D~~EGA--D~lMVKPa~~-------yLDii~~~k~~---~~~P~~a  282 (337)
                            .|....+...|.=.+.....-+.+ ...=.+.|-  +=+++-||+-       .+.+++.+..-   ...|+.+
T Consensus       131 ------~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~IiiDPGiGFgK~~~~n~~ll~~l~~~~~~~g~Pilv  204 (258)
T cd00423         131 ------TPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFGKTEEHNLELLRRLDAFRELPGLPLLL  204 (258)
T ss_pred             ------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             ------86556668986648999999999999999986999300887477677888788999999799997215994698


Q ss_pred             EECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf             93461899999999888978899999999999772699998201899999985
Q gi|255764463|r  283 YQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILT  335 (337)
Q Consensus       283 YqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~  335 (337)
                      = +|- =++|......+--+...+-+-....---.||+++-+--.++..+-++
T Consensus       205 G-~SR-Ksfi~~~~~~~~~~Rl~~t~a~~~~a~~~Ga~ilRvHdV~e~~~ai~  255 (258)
T cd00423         205 G-VSR-KSFLGDLLSVGPKDRLAGTAAFLAAAILNGADIVRVHDVKELRDAIK  255 (258)
T ss_pred             E-ECH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf             6-029-89998754998687409899999999987999999589899999998


No 292
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=32.00  E-value=2.4  Score=23.55  Aligned_cols=44  Identities=30%  Similarity=0.373  Sum_probs=27.6

Q ss_pred             HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf             999962897352466767799999999987788--57730033666435
Q gi|255764463|r  163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS  209 (337)
Q Consensus       163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS  209 (337)
                      +.++.+|+|   |..|--|-+.||++.|+.+|.  .|+-+.----=||+
T Consensus       276 ~~~~~~g~d---P~~m~~~p~~A~~k~L~~agl~~~Did~~EinEAFA~  321 (392)
T PRK06633        276 VSYASAGVD---PSIMGTAPVPASQKALSKAGWSVNDLEVIEVNEAFAA  321 (392)
T ss_pred             EEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEEHHHHH
T ss_conf             988998758---5763535199999999984998310867886036688


No 293
>pfam09505 Dimeth_Pyl Dimethylamine methyltransferase (Dimeth_PyL). This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=31.69  E-value=13  Score=18.55  Aligned_cols=138  Identities=21%  Similarity=0.275  Sum_probs=58.6

Q ss_pred             HHHHCCCCCHHHCCCCEEEECCCCCEE------ECCCCCC--CCCCCHHHHHHHHHHHHHCCCCE-----EEEEECCCCC
Q ss_conf             986347788877331166675898811------0488878--63288999999999999888936-----7633025633
Q gi|255764463|r   28 EMVREHRLSVSDLILPIFLTSGEKTVE------SINSMPD--VMRMSIDVAVEKIKQVADLGIPA-----IAIFPNIPMD   94 (337)
Q Consensus        28 ~Lv~Et~Ls~~dLI~PiFV~eg~~~k~------~I~SMPG--v~R~Sid~L~~eie~~~~lGI~a-----v~LFp~I~~~   94 (337)
                      +-++--.+...+.|.|+|--.-.|---      |.+ -||  ..-|-+|+.-+-.|++.+.=-+-     --||..-.+-
T Consensus       129 necqamevcqqnmiiplfygampnmglyytpdgpfe-npgdlmkafkideawesmehaadhltrdtvwvmqklfasgadg  207 (466)
T pfam09505       129 NECQAMEVCQQNMIIPLFYGAMPNMGLYYTPDGPFE-NPGDLMKAFKIDEAWESMEHAADHLTRDTVWVMQKLFASGADG  207 (466)
T ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             356799998746563300036788732358998878-8688887630138888788777553267999999987626876


Q ss_pred             CCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC-CCCCCHHHHHHHH--HHHHHHHHHC
Q ss_conf             45544542157653---7999999999730144798613327100114310013-6544628999999--9999999962
Q gi|255764463|r   95 LRNNTGSHIIDPDN---LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC-DGEIVNDETIELI--SHAAVIQADA  168 (337)
Q Consensus        95 ~Kd~~GseA~n~dg---lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~-~g~IdND~Tl~~L--~k~Al~~A~A  168 (337)
                       -+..-+ |-.-||   =...|+.+++++||++.|-.  -+..----|--|-+. ||     .|+.-|  -+||-..|+|
T Consensus       208 -vnfdtt-aaagdgdmygtlhavealrkefpemyiev--gmagemvlgmhgnlqydg-----vtlaglwphqqaplvaka  278 (466)
T pfam09505       208 -VNFDTT-AAAGDGDMYGTLHAVEALRKEFPEMYIEV--GMAGEMVLGMHGNLQYDG-----VTLAGLWPHQQAPLVAKA  278 (466)
T ss_pred             -CCCCCC-CCCCCCCCHHHHHHHHHHHHHCHHHEEEE--CCCCCEEEECCCCCCCCC-----EEEECCCCCCCCCHHHHC
T ss_conf             -564352-23578641135799999986560451540--202000110146400066-----677235744447366643


Q ss_pred             CCCEEEC
Q ss_conf             8973524
Q gi|255764463|r  169 GADIIAP  175 (337)
Q Consensus       169 GaDivAP  175 (337)
                      ||.+..|
T Consensus       279 ganvfgp  285 (466)
T pfam09505       279 GANVFGP  285 (466)
T ss_pred             CCCCCCC
T ss_conf             6652055


No 294
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain; InterPro: IPR013350    Proteins in this entry represent a small clade of ribonucleoside-diphosphate reductase alpha chains which are sufficiently divergent from the usual Class I ribonucleotide reductase (RNR) alpha chains (NrdE or NrdA, IPR013346 from INTERPRO) to form a distinct group. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain..
Probab=31.50  E-value=31  Score=16.08  Aligned_cols=69  Identities=14%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             ECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
Q ss_conf             0336664354301016753102446777744315721147889888876640898799553114589999999
Q gi|255764463|r  201 MPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIK  273 (337)
Q Consensus       201 msYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k  273 (337)
                      ||-..||.++-|-||-=+-.-+-.+  =||.||+.=...++++||+....+ +-+. |=-=+--|+|.+.+=+
T Consensus         1 ~s~~~r~~~S~~e~~~w~n~~~r~~--~rrgYll~G~~v~~rvr~iA~~~e-~l~~-~~gf~~rf~ey~arG~   69 (560)
T TIGR02510         1 MSAERRYLQSTGEIFEWLNTQGRSY--LRRGYLLKGETVEDRVREIASTAE-KLDK-VEGFEERFFEYLARGK   69 (560)
T ss_pred             CCCCCHHHHHCCCCHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHHHH-HHCC-CCCHHHHHHHHHHHHH
T ss_conf             9753000101035603443677888--651645789776678999999998-5114-7404678899998404


No 295
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family; InterPro: IPR006360   This entry represents a methyltransferase domain found in proteins which are involved in C1 metabolism in methanogenic archaea and methylotrophic bacteria. It is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (4.1.1.37 from EC).   In methanogens, this domain is found in single-domain proteins catalysing the transfer of the methyl group of methylcobalamin to coenzymeM . In Methanosarcina barkeri these proteins have been shown to be involved in methanogenesis from C1 compounds such as methylamine and dimethylsulphide ,  CH3-cob(III)alamin + coenzymeM --> cob(I)alamin + CH3-coenzymeM    In methylotrophic bacteria, this domain is found at the N-terminus of the bifunctional corrinoid-binding CmuA protein, which is involved in chloromethane utilisation. The pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , .  CH3Cl + cob(I)alamin ---> CH3-cob(III)alamin + Cl- ; GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=31.46  E-value=42  Score=15.12  Aligned_cols=74  Identities=24%  Similarity=0.381  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC-CC---CC---CC-C---CCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             3799999999973014-479861332710011431-00---13---65-4---462899999999999999628973524
Q gi|255764463|r  108 NLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD-GI---LC---DG-E---IVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       108 glv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc-Gi---~~---~g-~---IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      -+|-+|||.+++++.+ +-||+ +=--|+|-=+|- |.   +.   ++ +   =.-|...+.-...|-..-++|||+++|
T Consensus       126 ~~vL~a~~~l~~r~~~~~p~i~-~~~gP~t~A~~~~~~~~f~~~~~~~~d~~~~~~e~a~d~~~aya~~m~e~Gadv~~i  204 (350)
T TIGR01463       126 PVVLEAIKILRERYGDELPIIG-SMEGPFTLAQDLIGVEEFLKWISTDPDLAKAVLELALDFVIAYAKAMVEAGADVIAI  204 (350)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             6678999999996388604168-886646677664045888630368645799999998899999999888725204311


Q ss_pred             ------CCCCCCH
Q ss_conf             ------6676779
Q gi|255764463|r  176 ------SEMMDGR  182 (337)
Q Consensus       176 ------SdMMDGr  182 (337)
                            +|.|-|-
T Consensus       205 ~DP~aS~dL~~pe  217 (350)
T TIGR01463       205 ADPVASSDLISPE  217 (350)
T ss_pred             CCCCCCCCCCCCH
T ss_conf             5766670005714


No 296
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=31.44  E-value=23  Score=16.91  Aligned_cols=194  Identities=20%  Similarity=0.262  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHCCCC----EEEEEECCCCCCCCCCCCCCCCCCCHHH-HHHH-HHHHH--------------------
Q ss_conf             99999999999988893----6763302563345544542157653799-9999-99973--------------------
Q gi|255764463|r   67 IDVAVEKIKQVADLGIP----AIAIFPNIPMDLRNNTGSHIIDPDNLIN-EGIC-AIKKN--------------------  120 (337)
Q Consensus        67 id~L~~eie~~~~lGI~----av~LFp~I~~~~Kd~~GseA~n~dglv~-rAIr-~IK~~--------------------  120 (337)
                      ++.-++.+|++.+--=+    -.-|| .+++ .  ..|..-|-|+|-+. +.+. -+++.                    
T Consensus       226 L~~~l~~~eEakkRDHRklGkel~LF-~f~~-~--~pGl~~w~P~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw  301 (639)
T PRK00413        226 LDAYLHRLEEAEKRDHRKLGKELDLF-SFQE-E--GPGLPFWHPKGWIIRNELEDYMRRRHLKAGYQEVNTPHILDRSLW  301 (639)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHCCCE-EECC-C--CCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
T ss_conf             99999999998852888887743515-7036-6--887646637689999999999999999869859836413468899


Q ss_pred             --------HC-CCEEE-----ECCCCCHHHCCCCCCCCCCCC--------------------------------------
Q ss_conf             --------01-44798-----613327100114310013654--------------------------------------
Q gi|255764463|r  121 --------IP-NIGII-----TDVALDPFTIHGHDGILCDGE--------------------------------------  148 (337)
Q Consensus       121 --------fp-dl~vi-----~DVcLc~YT~hGHcGi~~~g~--------------------------------------  148 (337)
                              |. +|...     -+-+|=|.+.-|||-|+..+.                                      
T Consensus       302 ~~SGHw~~Y~e~Mf~~~~~~~~~~~lKPMNCP~H~~if~~~~~SYRdLPlR~aEfg~~~R~E~SG~L~GL~RvR~FtqdD  381 (639)
T PRK00413        302 ETSGHWDHYRENMFPTMSDDGEDYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGTVHRYEKSGALHGLMRVRGFTQDD  381 (639)
T ss_pred             HHCCCHHHHCCCCCCCEECCCCEEEECCCCCCCHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf             65474223225422324015210320466870033564435535554755666411320567787445642330000158


Q ss_pred             --C------CHHHHHHHHHHHHHHHHHCCCC--EEECCC----------CCCCHHHHHHHHHHHCCCCCCCEECHHHHHH
Q ss_conf             --4------6289999999999999962897--352466----------7677999999999877885773003366643
Q gi|255764463|r  149 --I------VNDETIELISHAAVIQADAGAD--IIAPSE----------MMDGRVQEIRKKLDSHGHINVGIMPYVAKFN  208 (337)
Q Consensus       149 --I------dND~Tl~~L~k~Al~~A~AGaD--ivAPSd----------MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfa  208 (337)
                        |      ..++-...|.-+--.|..=|-.  -+--|-          |-|---.++|++|++.|..-..     ..=-
T Consensus       382 aHIFc~~dQi~~Ei~~~l~~~~~vy~~fGf~~~~~~lStrpek~~g~~e~W~~Ae~~L~~al~~~g~~y~~-----~~Ge  456 (639)
T PRK00413        382 AHIFCTPEQIKDELLSVLDLILSVYKDFGLTDYYLELSTRPEKRVGSDELWEKATEALREALEESGLEYVE-----NPGE  456 (639)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-----CCCC
T ss_conf             41324789999999999999999999749980389996475113588899999999999999974998087-----8886


Q ss_pred             HHHHCC-----HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CC--CEEEECCCH--HHHHHHHHHHHHC
Q ss_conf             543010-----16753102446777744315721147889888876640-89--879955311--4589999999624
Q gi|255764463|r  209 SSFYGP-----YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SA--DMLLVKPGL--PYLDVCFRIKEKF  276 (337)
Q Consensus       209 S~fYgP-----FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GA--D~lMVKPa~--~yLDii~~~k~~~  276 (337)
                      .+||||     ++||.|-.=+    -.|-|+|+... |  |=-...++| |.  --+|+--|.  .+=-.|.-+-+++
T Consensus       457 gAFYGPKID~~~~DalgR~wq----~~TiQlDf~lP-e--rF~l~Y~~~dg~~~~PVmIHRAi~GS~ERfiaiLiEh~  527 (639)
T PRK00413        457 GAFYGPKIDVQLKDAIGRTWQ----CGTIQLDFNLP-E--RFDLEYIAADGEKHRPVMIHRAIFGSIERFIGILIEHY  527 (639)
T ss_pred             CCEECCEEEEEEECCCCCEEE----CCHHHHHHCCH-H--HCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             111101667785144687132----00233222245-4--24888998889816308999525565899999999980


No 297
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=31.29  E-value=43  Score=15.10  Aligned_cols=234  Identities=14%  Similarity=0.120  Sum_probs=119.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf             88786328899999999999988893676330--2563345544542157653799999999973014479861332710
Q gi|255764463|r   58 SMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP--NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF  135 (337)
Q Consensus        58 SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp--~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y  135 (337)
                      +-++--.-+++.+++.++.+-++|-.++-+-=  ...++.-+.  ...+++  ++  .+-.+-.....|-+-|=|..=||
T Consensus        15 ~~~~~~~~~~~~~~~~a~~AE~lGfds~w~~Dh~~~~~~~~~~--~~~~dp--~~--~LaalAa~T~ri~lgt~v~~lp~   88 (298)
T TIGR03571        15 NYQGRPVPDMERQVELAQRAEALGFAALWLRDVPLYDPDFGDA--GQVFDP--FV--YLGYLAAVTSRIALGTAAIVLPL   88 (298)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CCCCCH--HH--HHHHHHHHCCEEEEEEEEECCCC
T ss_conf             7899965699999999999998599988762546545787886--665289--99--99999985796688853424254


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf             0114310013654462899999999-----------99999962897352466767799999999987788577300336
Q gi|255764463|r  136 TIHGHDGILCDGEIVNDETIELISH-----------AAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYV  204 (337)
Q Consensus       136 T~hGHcGi~~~g~IdND~Tl~~L~k-----------~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYs  204 (337)
                      -   |=.++.+.-    +||+.|+.           ...-+...|.+.=-.-.++|-.+..+|+.+..+..      +| 
T Consensus        89 r---~P~~lAk~~----atLD~lS~GRl~lGvG~G~~~~E~~a~G~~~~~r~~r~~E~l~il~~lw~~~~~------~~-  154 (298)
T TIGR03571        89 R---HPLHVAKAA----ASLDQLSGGRFLLGVASGDRPSEYPAFGVDFESRGERFREAIDVLRAALREPFP------SI-  154 (298)
T ss_pred             C---CHHHHHHHH----HHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC------CC-
T ss_conf             4---899999999----989976299579998334877778773998015999999999999999659997------75-


Q ss_pred             HHHHHHHHCCHHHHHHCCCCCCCCCCCCC--CC---CCHHHHHHHHHHHHHHCCCCEEEECCCH-----HHHHHHHHHHH
Q ss_conf             66435430101675310244677774431--57---2114788988887664089879955311-----45899999996
Q gi|255764463|r  205 AKFNSSFYGPYRDAISTRDLLKGDKKTYY--LD---PANVQEAIREASIDIQESADMLLVKPGL-----PYLDVCFRIKE  274 (337)
Q Consensus       205 aKfaS~fYgPFRdA~~S~p~~~gdr~sYQ--md---~~n~~eA~~e~~~D~~EGAD~lMVKPa~-----~yLDii~~~k~  274 (337)
                         ...||. |+..+...|+-      +|  .+   -.++..+++-+    .+-+|-.|.-|..     ..+|.+++..+
T Consensus       155 ---~G~~~~-~~~~~~~~P~P------~q~~~Pi~~gg~~~~~~~~a----Ar~gdgw~~~~~~~e~~~~~i~~~r~~~~  220 (298)
T TIGR03571       155 ---RSSLGE-LDGGLDLLPKP------TSGRIPLLATGSAQQSLEWI----ARNMDGWMTYPRPPETQRARIDEWREAVA  220 (298)
T ss_pred             ---CCCCCC-CCCCCCCCCCC------CCCCCCEEEECCCHHHHHHH----HHHCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             ---797655-58866668999------89995969746977899999----99788831269999999999999999877


Q ss_pred             HC-CCCEEEEECCHHHHH----HHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             24-998999934618999----99999888978899999999999772699998201
Q gi|255764463|r  275 KF-GLPTFAYQVSGEYAM----IKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       275 ~~-~~P~~aYqVSGEYam----i~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~  326 (337)
                      .. ..|.. +.+.-++.-    .......|+---.+.+.|.|..+.-+|+|-++-.+
T Consensus       221 ~~g~~p~~-~~~~~~l~~d~~~~~~~~~~g~~~g~~~iie~l~~y~eaGv~~vil~~  276 (298)
T TIGR03571       221 SGGFKPFG-QSMHLDLSEDPDEPPTPIRLGYRTGRNALIELLDALREAGVNHVALNL  276 (298)
T ss_pred             HCCCCCCC-EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             42799641-057998735876544221254204899999999999976997899737


No 298
>KOG4076 consensus
Probab=31.28  E-value=21  Score=17.24  Aligned_cols=39  Identities=31%  Similarity=0.180  Sum_probs=26.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf             799553114589999999624998999934618999999998889
Q gi|255764463|r  256 MLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW  300 (337)
Q Consensus       256 ~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~  300 (337)
                      +.+-.|+.  -|.++.-.+.-.    -|-.||.|+|-|+-..++-
T Consensus        41 ~~GklP~~--sd~l~krlQkgr----KyFDSGDYam~KAk~~~~~   79 (121)
T KOG4076          41 SYGKLPGG--SDFLRKRLQKGR----KYFDSGDYAMAKAKMKNKQ   79 (121)
T ss_pred             HHCCCCCC--CHHHHHHHHHCC----CCCCCCHHHHHHHHCCCCC
T ss_conf             73778761--289999998404----1336410889886035666


No 299
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=30.98  E-value=34  Score=15.77  Aligned_cols=90  Identities=19%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCC--CEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             352466767799999999987788577--300336664354301016753102446777744315721147889888876
Q gi|255764463|r  172 IIAPSEMMDGRVQEIRKKLDSHGHINV--GIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASID  249 (337)
Q Consensus       172 ivAPSdMMDGrV~aIR~~Ld~~g~~~~--~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D  249 (337)
                      +|=|-.+-.|.++.|-+.+.++||.=+  ..+-.+..-++.||..+|+.   .| |      |+                
T Consensus         6 iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~---~p-f------f~----------------   59 (134)
T cd04412           6 IIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGV---VP-E------LP----------------   59 (134)
T ss_pred             EECCHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCC---CC-C------HH----------------
T ss_conf             9890355148899999999986999976141679999999999997065---43-1------77----------------


Q ss_pred             HHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             6408987995531145899999996249989999346189999999988897889999
Q gi|255764463|r  250 IQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAM  307 (337)
Q Consensus       250 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~  307 (337)
                                       ++   +.-.+.=|+.|..++||=|--+.-..-|--|...+-
T Consensus        60 -----------------~l---v~~mtsGPvval~L~g~naV~~~R~l~Gpt~p~~A~   97 (134)
T cd04412          60 -----------------AM---VDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAK   97 (134)
T ss_pred             -----------------HH---HHHHCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHH
T ss_conf             -----------------89---999716987899860745999999985799857766


No 300
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=30.74  E-value=44  Score=15.04  Aligned_cols=19  Identities=53%  Similarity=0.623  Sum_probs=10.4

Q ss_pred             HHHHHHHHCCCCEEE-CCCC
Q ss_conf             999999962897352-4667
Q gi|255764463|r  160 HAAVIQADAGADIIA-PSEM  178 (337)
Q Consensus       160 k~Al~~A~AGaDivA-PSdM  178 (337)
                      +.+-.+|..|||+|. ||..
T Consensus       148 e~~r~la~~Ga~ii~~ps~~  167 (259)
T cd07577         148 EAARTLALKGADIIAHPANL  167 (259)
T ss_pred             HHHHHHHHCCCCEEEEEECC
T ss_conf             99999998799899990046


No 301
>TIGR01595 cas_CT1132 CRISPR-associated protein, CT1132 family; InterPro: IPR006482   This protein is found in at least five species that contain CRISPR loci being found exclusively next to other cas proteins. Its function is unknown..
Probab=30.65  E-value=44  Score=15.03  Aligned_cols=170  Identities=20%  Similarity=0.233  Sum_probs=110.1

Q ss_pred             CCCEEEECCCC-----CHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHCCCCEEE----CCCCCCCHHHHHHHHHH
Q ss_conf             14479861332-----71001143100136544628999999999-9999962897352----46676779999999998
Q gi|255764463|r  122 PNIGIITDVAL-----DPFTIHGHDGILCDGEIVNDETIELISHA-AVIQADAGADIIA----PSEMMDGRVQEIRKKLD  191 (337)
Q Consensus       122 pdl~vi~DVcL-----c~YT~hGHcGi~~~g~IdND~Tl~~L~k~-Al~~A~AGaDivA----PSdMMDGrV~aIR~~Ld  191 (337)
                      ...+++|||||     +..-+-||.=++..++++||.--+....+ -|.-+++++-=+-    |.=-.-|.|-.|+..+-
T Consensus        34 Tg~l~vsDV~lKR~vRd~lq~~G~~il~~~~~~~~~k~~s~~~~~~dl~~~~~~~K~~~krnkPGvaqGGevd~~~~~~~  113 (310)
T TIGR01595        34 TGRLLVSDVRLKRKVRDYLQELGKEILVKTKERLEDKVRSLEKVLEDLVVKKAKVKDAEKRNKPGVAQGGEVDKIEEKAC  113 (310)
T ss_pred             CCEEEEEEEEEEHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             57466877664023357788618724765067545226899987876400103477600136886456862124589875


Q ss_pred             HCCCCCC----CEECHHHH--HHHHHHCCHHHHHHC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             7788577----30033666--435430101675310--2446777744315721-1478898888766408987995531
Q gi|255764463|r  192 SHGHINV----GIMPYVAK--FNSSFYGPYRDAIST--RDLLKGDKKTYYLDPA-NVQEAIREASIDIQESADMLLVKPG  262 (337)
Q Consensus       192 ~~g~~~~----~ImsYsaK--faS~fYgPFRdA~~S--~p~~~gdr~sYQmd~~-n~~eA~~e~~~D~~EGAD~lMVKPa  262 (337)
                      .. |.||    .+|+++.|  .++.-=||-.=.-+-  .|.   -=.+.|..-+ +..||=-+...|-            
T Consensus       114 ~~-y~DvR~FGaV~~~~kkGam~~~v~GPvq~~~a~Sl~Pv---~~~~~qit~~~~~~eak~~~~~~~------------  177 (310)
T TIGR01595       114 AK-YIDVRLFGAVITKSKKGAMEIDVRGPVQVSYAKSLEPV---VILELQITRAAAGEEAKAEKQRDQ------------  177 (310)
T ss_pred             HH-CCCEEEECCCCCCCCCCCEECCCCCCEEEEECCCCCCE---EEEEECCHHHHHHCCHHHHCCCCC------------
T ss_conf             20-34234302105766563121022266478744530512---203001113332001022046652------------


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC--CHH-HHHHHHHHHHH
Q ss_conf             145899999996249989999346189999999988897--889-99999999997
Q gi|255764463|r  263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWI--NKN-DAMMESLLAFK  315 (337)
Q Consensus       263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~--d~~-~~~~E~l~~~k  315 (337)
                             +.+..++-+|=|.|..-|=|.-= +|.+.|+-  .++ ..+.|.|+...
T Consensus       178 -------~t~~~k~~vpYa~y~~~G~~n~n-~A~~tG~~ts~eD~~~~~~aL~~~~  225 (310)
T TIGR01595       178 -------RTMGEKYVVPYALYKLYGVINAN-LAKKTGFSTSEEDLEKFLEALLNGF  225 (310)
T ss_pred             -------CCCCCCCCCCHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -------10143553651665432455344-3531487645888999999999876


No 302
>cd06568 GH20_SpHex_like A subgroup of  the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex).  SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=30.62  E-value=44  Score=15.03  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=35.8

Q ss_pred             EEEECCCCCEEECCCCCCCCC--------------CCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             666758988110488878632--------------889999999999998889367633
Q gi|255764463|r   44 IFLTSGEKTVESINSMPDVMR--------------MSIDVAVEKIKQVADLGIPAIAIF   88 (337)
Q Consensus        44 iFV~eg~~~k~~I~SMPGv~R--------------~Sid~L~~eie~~~~lGI~av~LF   88 (337)
                      +-++|..+=+-+|++.|..-.              ||.+.+.+.++-+.+.||+-|-=|
T Consensus        37 ~HltDdqgwrle~~~~P~lt~~ga~~~~~~~~~g~YT~~d~~eiv~yA~~rgI~ViPEI   95 (329)
T cd06568          37 LHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI   95 (329)
T ss_pred             EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             88862898703007877623356656668888870789999999999997599897623


No 303
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.60  E-value=29  Score=16.24  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=19.6

Q ss_pred             HHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf             999999628973524667677999
Q gi|255764463|r  161 AAVIQADAGADIIAPSEMMDGRVQ  184 (337)
Q Consensus       161 ~Al~~A~AGaDivAPSdMMDGrV~  184 (337)
                      +.-+.-.||||++=--||.||++-
T Consensus       105 iva~al~aGa~vLySEDmQ~gl~i  128 (142)
T COG5573         105 IVATALNAGADVLYSEDMQDGLVI  128 (142)
T ss_pred             HHHHHHHCCCCEEECHHCCCCEEE
T ss_conf             999999758766533002687543


No 304
>PRK07695 transcriptional regulator TenI; Provisional
Probab=30.50  E-value=44  Score=15.01  Aligned_cols=58  Identities=28%  Similarity=0.366  Sum_probs=41.1

Q ss_pred             HHHHHHCCCCEEEE--------CCCHH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             88766408987995--------53114--589999999624998999934618999999998889788999999999997
Q gi|255764463|r  246 ASIDIQESADMLLV--------KPGLP--YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFK  315 (337)
Q Consensus       246 ~~~D~~EGAD~lMV--------KPa~~--yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~k  315 (337)
                      +.....+|||++-+        ||+.+  -++.++++...+.+|+.|-               |-++.+.     +....
T Consensus       108 ~~~a~~~gaDYi~~Gpif~T~tK~~~~~~G~~~l~~~~~~~~iPvvAI---------------GGI~~~n-----i~~v~  167 (202)
T PRK07695        108 AIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSEIARALSIPVIAI---------------GGITPEN-----TRDVL  167 (202)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCCHHH-----HHHHH
T ss_conf             999977699969972541268888988789999999998679998998---------------6989999-----99999


Q ss_pred             HHCCCEEE
Q ss_conf             72699998
Q gi|255764463|r  316 RAGCDGIF  323 (337)
Q Consensus       316 RAGAd~Ii  323 (337)
                      ++||+.|-
T Consensus       168 ~~Ga~giA  175 (202)
T PRK07695        168 AAGVSGIA  175 (202)
T ss_pred             HCCCCEEE
T ss_conf             82999999


No 305
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.43  E-value=44  Score=15.00  Aligned_cols=179  Identities=21%  Similarity=0.236  Sum_probs=103.4

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCEEEE
Q ss_conf             104888786328899999999999988893--67633025633455445421576537999999---9997301447986
Q gi|255764463|r   54 ESINSMPDVMRMSIDVAVEKIKQVADLGIP--AIAIFPNIPMDLRNNTGSHIIDPDNLINEGIC---AIKKNIPNIGIIT  128 (337)
Q Consensus        54 ~~I~SMPGv~R~Sid~L~~eie~~~~lGI~--av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr---~IK~~fpdl~vi~  128 (337)
                      .|..==||.=.+++-..+.++  +.++|+.  .+.+.-+|--+-|-+.--..+.-+++.=||+-   -||-.-||+.||+
T Consensus        13 ~~~~WCpGCG~~~Il~a~~~a--l~el~~~~~~~v~vSGIGCs~r~p~y~~~~~~h~lHGRalp~AtGiK~AnPdL~Viv   90 (286)
T PRK11866         13 RPPIWCPGCGNYGILEALRRA--LAELGIPPENVVVVSGIGCSSNLPEFLNTYGIHGIHGRLLPIATGVKWANPKLTVIA   90 (286)
T ss_pred             CCCCCCCCCCCHHHHHHHHHH--HHHCCCCCCCEEEEECCCCCCCCCCCEECCCEEHHHCCCHHHHHHHHHHCCCCEEEE
T ss_conf             998668999718999999999--998599966389982777663050507526240221250688999987589977999


Q ss_pred             CC---CC-----------------------------------CHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             13---32-----------------------------------7100114310013-654462899999999999999628
Q gi|255764463|r  129 DV---AL-----------------------------------DPFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAG  169 (337)
Q Consensus       129 DV---cL-----------------------------------c~YT~hGHcGi~~-~g~IdND~Tl~~L~k~Al~~A~AG  169 (337)
                      -.   +.                                   .|-|..|.-.-.. .|.++...   ....+|+  | +|
T Consensus        91 ~~GDGD~~~IG~nh~ihA~rRN~dit~iv~nN~iYGlTgGQ~SpTTp~G~~T~ttP~G~~~~p~---np~~la~--a-~g  164 (286)
T PRK11866         91 YGGDGDGYGIGLQHLIHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPF---NPIALAL--A-AG  164 (286)
T ss_pred             EECCCCHHCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHH--H-CC
T ss_conf             9268732042388999999848993799988743214789689899998857647999877897---9999999--8-79


Q ss_pred             CCEEECC--CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH-HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9735246--676779999999998778857730033666435-4301016753102446777744315721147889888
Q gi|255764463|r  170 ADIIAPS--EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS-SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREA  246 (337)
Q Consensus       170 aDivAPS--dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS-~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~  246 (337)
                      |-.||-+  .-+.--...|++++...||.-+-|+|--.-|.- +-|.=||+-+-.   +  +...  .||.|..+|+.-+
T Consensus       165 atfVAR~~~~~~~~l~~~ik~Ai~hkGfs~VeVlspCvTfNk~nt~~wy~~~~~~---l--~e~~--~dp~d~~~A~~~a  237 (286)
T PRK11866        165 ATFVARGFSGDVKHLKEIIKKAIKHKGFSFIDVLSPCVTFNKVNTYDWFRPRVYK---L--EETG--HDPTNFEQAYKKA  237 (286)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHCEEE---C--CCCC--CCHHHHHHHHHHH
T ss_conf             9889977047999999999999779996799997899826776512334435684---6--6579--8827799999998


Q ss_pred             H
Q ss_conf             8
Q gi|255764463|r  247 S  247 (337)
Q Consensus       247 ~  247 (337)
                      .
T Consensus       238 ~  238 (286)
T PRK11866        238 L  238 (286)
T ss_pred             H
T ss_conf             8


No 306
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=30.36  E-value=44  Score=15.00  Aligned_cols=59  Identities=27%  Similarity=0.283  Sum_probs=41.7

Q ss_pred             HHHHHHCCCCEEEEC--------CCH---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             887664089879955--------311---458999999962499899993461899999999888978899999999999
Q gi|255764463|r  246 ASIDIQESADMLLVK--------PGL---PYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF  314 (337)
Q Consensus       246 ~~~D~~EGAD~lMVK--------Pa~---~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~  314 (337)
                      +..-...|||++.+=        |+.   --++.++.+++.+++|+.|.               |-++.+     .+..+
T Consensus       108 ~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~~~~~Pv~Ai---------------GGI~~~-----ni~~~  167 (196)
T cd00564         108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAI---------------GGITPE-----NAAEV  167 (196)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCCHH-----HHHHH
T ss_conf             9998870999388646557898888778778899999998679998998---------------589999-----99999


Q ss_pred             HHHCCCEEEE
Q ss_conf             7726999982
Q gi|255764463|r  315 KRAGCDGIFT  324 (337)
Q Consensus       315 kRAGAd~Iit  324 (337)
                      .++||+.|--
T Consensus       168 ~~~G~~giAv  177 (196)
T cd00564         168 LAAGADGVAV  177 (196)
T ss_pred             HHCCCCEEEE
T ss_conf             9809999997


No 307
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.29  E-value=44  Score=14.99  Aligned_cols=167  Identities=15%  Similarity=0.114  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI  143 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi  143 (337)
                      +...+.+.+.++.+.+.|+..+.+.|.+-+..     +-+..+.   .+.++..++.-..+  +.               
T Consensus        16 ~iD~~~l~~~i~~l~~~Gv~gi~v~GstGE~~-----~Ls~eEr---~~vi~~~~~~~~~v--i~---------------   70 (279)
T cd00953          16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGP-----SLSFQEK---LELLKAYSDITDKV--IF---------------   70 (279)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH-----HCCHHHH---HHHHHHHHHHCCCE--EE---------------
T ss_conf             67999999999999977999999781312165-----5899999---99999999967981--89---------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf             1365446289999999999999962897352---4667677999999999877885773003366643543010167531
Q gi|255764463|r  144 LCDGEIVNDETIELISHAAVIQADAGADIIA---PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS  220 (337)
Q Consensus       144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~  220 (337)
                       .-|.+.-+++    .++|-...++|||.|.   |.=. -+             ..+-.+..|           |++.+.
T Consensus        71 -~vg~~~~~~a----i~la~~A~~~Gad~i~~~pP~y~-~~-------------~~~~~l~~y-----------f~~va~  120 (279)
T cd00953          71 -QVGSLNLEES----IELARAAKSFGIYAIASLPPYYF-PG-------------IPEEWLIKY-----------FTDISS  120 (279)
T ss_pred             -EECCCCHHHH----HHHHHHHHHCCCCEEEEECCCCC-CC-------------CCHHHHHHH-----------HHHHHH
T ss_conf             -9777879999----99999999779998997688678-99-------------999999999-----------999985


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             0244677774431572114788988887664089-8799553114589999999624998999934618999
Q gi|255764463|r  221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESA-DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAM  291 (337)
Q Consensus       221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA-D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYam  291 (337)
                      +-|...     |+.+.+...+--.+....+.+-. .++-||-+-..+.-+.++++.-. -+..+.-+.++.+
T Consensus       121 ~lPi~l-----Yn~P~~tg~~l~~~~~~~L~~~~~~v~giKds~~d~~~~~~~~~~~~-~~~v~~G~d~~~~  186 (279)
T cd00953         121 PYPTFI-----YNYPKATGYDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKRLVP-DFKVYSGPDSLIF  186 (279)
T ss_pred             HCCEEE-----EECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC-CCEEECCCHHHHH
T ss_conf             098769-----96775358888999999998179988999738769999999998489-9478569579999


No 308
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.28  E-value=44  Score=14.99  Aligned_cols=48  Identities=25%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH---HHHHHHHHHCCCCCCCEEC
Q ss_conf             89999999999999962897352466767799---9999999877885773003
Q gi|255764463|r  152 DETIELISHAAVIQADAGADIIAPSEMMDGRV---QEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV---~aIR~~Ld~~g~~~~~Ims  202 (337)
                      +.|.+...+.|+   +-++|+|+-|.+|-+..   ....+.|.++|..+++|+-
T Consensus        36 ~~s~eeiv~~A~---~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~v   86 (122)
T cd02071          36 RQTPEEIVEAAI---QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVG   86 (122)
T ss_pred             CCCHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             889999999999---739989999646554478999999999976999846999


No 309
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.23  E-value=44  Score=14.98  Aligned_cols=194  Identities=16%  Similarity=0.182  Sum_probs=93.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf             89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC  145 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~  145 (337)
                      +.+.+.+.++++.+.|..+|++.|..                  +.++.+.++..  .+.++.+      -++|-. .. 
T Consensus        17 ~~~di~~l~~~a~~~g~~avcv~p~~------------------v~~~~~~l~~~--~v~~vv~------fp~g~~-~~-   68 (231)
T pfam01791        17 ASADIKALVAEALEPGASAVCVNPGY------------------VALAARLLGKV--DIALVIG------FPAGTY-LT-   68 (231)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECHHH------------------HHHHHHHHCCC--CEEEEEE------ECCCCC-CC-
T ss_conf             76899999999998799989987899------------------99999986579--8369997------479887-76-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCE---EEC-CCCCCCH-------HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf             654462899999999999999628973---524-6676779-------99999999877885773003366643543010
Q gi|255764463|r  146 DGEIVNDETIELISHAAVIQADAGADI---IAP-SEMMDGR-------VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP  214 (337)
Q Consensus       146 ~g~IdND~Tl~~L~k~Al~~A~AGaDi---vAP-SdMMDGr-------V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP  214 (337)
                        ..   ++-+.+.-.+-.-.+.|||-   |.+ +..-+|.       ++.++++-...+. .+.++.|.          
T Consensus        69 --~~---k~~~~~~~ev~~Ai~~GAdeid~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-kvIiE~~~----------  132 (231)
T pfam01791        69 --PV---KGRDVLVAEAEEAIALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEACHGEGL-KVILEAYL----------  132 (231)
T ss_pred             --CC---CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEEE----------
T ss_conf             --55---431002887999998799889999724657895599999999999986310487-08999851----------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH----HHHHHHHHHHHHC---CCCEEEEECCH
Q ss_conf             1675310244677774431572114788988887664089879955311----4589999999624---99899993461
Q gi|255764463|r  215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL----PYLDVCFRIKEKF---GLPTFAYQVSG  287 (337)
Q Consensus       215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~----~yLDii~~~k~~~---~~P~~aYqVSG  287 (337)
                                 .++..+-+.++.+-..|.|.+   .+=|||+|=+..+.    ....-++..++..   ++||-   +||
T Consensus       133 -----------~~~~~~~~~~~~~i~~a~ria---~e~GaD~vKtstg~~~~gat~~~v~~~~~~~~~~~~~Vk---~sG  195 (231)
T pfam01791       133 -----------RGEEIKDKVDPHLVAKATRVG---AEAGADFVKTSTGFGERGATEEDVQIFKEVVGGAPPGVK---ASG  195 (231)
T ss_pred             -----------CCCHHCCCCCHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE---EEC
T ss_conf             -----------572100326899999999999---995999898157878887788899999998568787489---933


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             8999999998889788999999999997726999982018999
Q gi|255764463|r  288 EYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEA  330 (337)
Q Consensus       288 EYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~  330 (337)
                      =       ...+  ++. -.+|....+.+|||+.|=|-..+.+
T Consensus       196 G-------i~~~--~~~-~~l~~a~~~i~aGA~~~G~s~Gr~i  228 (231)
T pfam01791       196 G-------IKEK--DFL-RTVEDAIALIEAGADRIGVSAGRAI  228 (231)
T ss_pred             C-------CCCC--CHH-HHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             8-------6864--378-9999999999869981209998998


No 310
>PRK10537 voltage-gated potassium channel; Provisional
Probab=30.00  E-value=39  Score=15.33  Aligned_cols=19  Identities=32%  Similarity=0.247  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHCCCEEEECH
Q ss_conf             9999999772699998201
Q gi|255764463|r  308 MESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       308 ~E~l~~~kRAGAd~IitY~  326 (337)
                      .|...-+||||||.+|+=.
T Consensus       303 ~en~~KlrrAGAD~VISP~  321 (356)
T PRK10537        303 SKNLEKIKRVHPDMIFSPQ  321 (356)
T ss_pred             HHHHHHHHHHCCCEEECHH
T ss_conf             7579999862899998688


No 311
>pfam06110 DUF953 Eukaryotic protein of unknown function (DUF953). This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=30.00  E-value=45  Score=14.96  Aligned_cols=67  Identities=21%  Similarity=0.330  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-C-CEEEECCCCCHHHCC
Q ss_conf             889999999999998889367633025633455445421576537999999999730---1-4-479861332710011
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---P-N-IGIITDVALDPFTIH  138 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---p-d-l~vi~DVcLc~YT~h  138 (337)
                      .+.+.+.+.+++....|=+-+++|-+    .||++|. +|-||-.  +|--.|++.|   | + .+|.++|---||=-+
T Consensus         3 ~Gy~ef~~~~~~~~~~~~~vfv~F~g----~kd~~G~-SWCPDCv--~AePvi~~~f~~~~~~~~~i~v~VG~r~~Wkd   74 (119)
T pfam06110         3 LGFEEFNKAVKESENGSKPIFALFTG----SKDTTGE-SWCPDCV--RAEPVIREALKHAPEDCHFIYVDVGDRPYWKD   74 (119)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEEC----CCCCCCC-CCCHHHH--HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             57999999999997379829999977----7799979-3690076--61488999998388885799999768271269


No 312
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.71  E-value=45  Score=14.93  Aligned_cols=35  Identities=20%  Similarity=0.123  Sum_probs=18.1

Q ss_pred             ECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             34618999999998889788999999999997726
Q gi|255764463|r  284 QVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAG  318 (337)
Q Consensus       284 qVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAG  318 (337)
                      .-||--+-.....+.|+--.+.-+.+.+.-+|+..
T Consensus       318 ~~SG~~~v~~~l~~~G~~l~~~~~~~i~~~vk~~a  352 (378)
T PRK11858        318 KHSGRHALKNKLKELGIELSREELQELLEKVKALS  352 (378)
T ss_pred             CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             57699999999997599999999999999999999


No 313
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=29.70  E-value=45  Score=14.92  Aligned_cols=61  Identities=21%  Similarity=0.340  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             328899999999999988893676330256334554454215765379999999997301447986
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIIT  128 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~  128 (337)
                      +||.--.+.+.++++.+.|+..+++||--|.-.-+..|+    -.+.+.|++++.+. -|.+..|.
T Consensus        97 mry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s----~~~~~~~al~~~~~-~~~i~~I~  157 (320)
T COG0276          97 MRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGS----YVDELARALKELRG-QPKISTIP  157 (320)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH----HHHHHHHHHHHCCC-CCCEEEEC
T ss_conf             347898689999999971987599997776302301899----99999999985378-98668816


No 314
>PRK06267 hypothetical protein; Provisional
Probab=29.65  E-value=45  Score=14.92  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf             78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r   60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG  139 (337)
Q Consensus        60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG  139 (337)
                      |--||.+.++++++++.+.++|.+.+.|=++-     +      |+. .-+++.++.||+ ++++.|..-+         
T Consensus        58 p~ryR~s~EeIl~~A~~~~~~G~kt~vLqsGe-----d------yt~-eel~~ii~~IK~-i~~~avtLSl---------  115 (324)
T PRK06267         58 PLKARRRPESILAEAIIMKRIGWKLEFISGGY-----G------YTT-EEINDIIEMISY-IQGSKQYLNV---------  115 (324)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCEEEEECCC-----C------CCH-HHHHHHHHHHHH-HCCCCEEEEC---------
T ss_conf             66552899999999999998399979980487-----7------998-999999999986-0187169715---------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC------------CEEECCCCCCCHHHHHHHHHHHCCCCC-CCEE
Q ss_conf             3100136544628999999999999996289------------735246676779999999998778857-7300
Q gi|255764463|r  140 HDGILCDGEIVNDETIELISHAAVIQADAGA------------DIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIM  201 (337)
Q Consensus       140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGa------------DivAPSdMMDGrV~aIR~~Ld~~g~~~-~~Im  201 (337)
                        |+...      +..       ....+||+            .-|+|+...+.|+..++. |.+.||+- .++|
T Consensus       116 --G~~s~------e~~-------~~~~~aG~~~~lETan~~ly~~i~p~~s~e~Ri~~l~~-lk~~G~e~gsG~i  174 (324)
T PRK06267        116 --GIIDF------ENL-------NLNEIEGVVGAVETVNPKLHEELCPGKPLDKIKEMLKK-AKDLGLKTGITII  174 (324)
T ss_pred             --CCCCH------HHH-------HHHHHCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHH-HHHCCCCEEEEEE
T ss_conf             --87879------999-------77766370142414798887027999988999999999-9983983200468


No 315
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=29.62  E-value=11  Score=19.04  Aligned_cols=147  Identities=17%  Similarity=0.287  Sum_probs=79.5

Q ss_pred             HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC------CC--
Q ss_conf             9988893676330256334554454215765379999999997301447986133271001143100136------54--
Q gi|255764463|r   77 VADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD------GE--  148 (337)
Q Consensus        77 ~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~------g~--  148 (337)
                      ...+.+..|+-.-++.  .|+.+|.-....+               ++.|. --||-|.... +.|+.+.      -.  
T Consensus       100 ~~~l~~gd~i~v~G~v--~~t~~Gel~v~~~---------------~~~iL-sksl~plP~k-~~g~~d~e~r~r~RyLD  160 (491)
T PRK00484        100 FKKLDLGDIIGVEGTL--FKTKTGELSVKVT---------------ELTLL-TKSLRPLPDK-FHGLSDQETRYRQRYLD  160 (491)
T ss_pred             HHCCCCCCEEEEEEEE--EECCCCEEEEECC---------------EEEEE-CCCCCCCCCC-CCCCCCHHHHCCCCCCC
T ss_conf             9606866689878799--8658851664033---------------17993-1688899854-44556755631133021


Q ss_pred             -CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECHHHHHHHHHHCCHH---HHHHC-
Q ss_conf             -462899999999999999628973524667677999999999877885--77300336664354301016---75310-
Q gi|255764463|r  149 -IVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPYVAKFNSSFYGPYR---DAIST-  221 (337)
Q Consensus       149 -IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsYsaKfaS~fYgPFR---dA~~S-  221 (337)
                       |-|+++.+.+..-+.                  -+.+||+.|+++||.  +||||.-+.-=|++  .||.   .|.+. 
T Consensus       161 Li~n~~~~~~f~~Rs~------------------ii~~iR~~l~~~gF~EVeTPiL~~~~gGA~A--rpF~t~~n~l~~~  220 (491)
T PRK00484        161 LIVNEESRETFRKRSK------------------IISAIRRFLDNRGFLEVETPMLQPIPGGAAA--RPFITHHNALDID  220 (491)
T ss_pred             CCCCHHHHHHHHHHHH------------------HHHHHHHHHHHCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCC
T ss_conf             0279999999999999------------------9999999998676899867877666887566--7655644566855


Q ss_pred             -----CCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf             -----2446-------777744315721147889888876640898799553114589
Q gi|255764463|r  222 -----RDLL-------KGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLD  267 (337)
Q Consensus       222 -----~p~~-------~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLD  267 (337)
                           +|.+       .|=-|-||+-+.-+.|.++.     ..-..+.|+-.=+.|.|
T Consensus       221 ~yL~~SPqLylk~l~vgG~ervfeI~r~FR~E~~~~-----rH~pEFT~lE~e~af~d  273 (491)
T PRK00484        221 LYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDT-----RHNPEFTMIEFYQAYAD  273 (491)
T ss_pred             EEECCCHHHHHHHHHHCCCHHHEEHHHHHHCCCCCC-----CCCCCEEEEEEEEECCC
T ss_conf             442068789877787627202222487662575543-----41840102136772479


No 316
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function.  Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity.  Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination.  This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=29.59  E-value=42  Score=15.18  Aligned_cols=183  Identities=15%  Similarity=0.216  Sum_probs=95.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCCCEEE---
Q ss_conf             542157653799999999973014479861332710011431001365446--289999999999999962897352---
Q gi|255764463|r  100 GSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIV--NDETIELISHAAVIQADAGADIIA---  174 (337)
Q Consensus       100 GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~Id--ND~Tl~~L~k~Al~~A~AGaDivA---  174 (337)
                      -+.-|+..++-+.+|++||+..|++-|+.-+-=+  |-.++--...-..++  -..-++-|..+--.|.--|.||==   
T Consensus        47 F~~~Wd~~~ltP~~V~~~K~~~pnvKV~iSiGG~--~v~~~~~~f~p~s~~~WV~NAv~SL~~iI~~Y~lDGIDIDyE~f  124 (253)
T cd06544          47 FNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGR--GVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHF  124 (253)
T ss_pred             EEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCC--CCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHC
T ss_conf             1233046774999999988529980599995687--56687211176207789999999999999970888611256544


Q ss_pred             CCC--CCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             466--76779999999998778857-730033666435430101675310244677774431572114788988887664
Q gi|255764463|r  175 PSE--MMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ  251 (337)
Q Consensus       175 PSd--MMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~  251 (337)
                      |+|  -----||.....|.+++-.. ++|-.+..- .+++|-+--.+-++   . -|-=.||.=               .
T Consensus       125 ~~d~~tF~~cIG~LIt~LK~~~vI~~aSIAP~~~~-~q~~Y~~L~~~Y~~---~-IDyVnfQFy---------------~  184 (253)
T cd06544         125 PADPDTFVECIGQLITELKNNGVIKVASIAPSEDA-EQSHYLALYNAYGD---Y-IDYVNYQFY---------------N  184 (253)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCHHHHHHHHHCC---C-CCEEEEEEE---------------C
T ss_conf             68778999999999998730796689984555665-65378999986237---3-425888865---------------1


Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHC
Q ss_conf             0898799553114589999999624--99899993461899999999888978-8999999999997726
Q gi|255764463|r  252 ESADMLLVKPGLPYLDVCFRIKEKF--GLPTFAYQVSGEYAMIKAASLQGWIN-KNDAMMESLLAFKRAG  318 (337)
Q Consensus       252 EGAD~lMVKPa~~yLDii~~~k~~~--~~P~~aYqVSGEYami~~a~~~g~~d-~~~~~~E~l~~~kRAG  318 (337)
                      ++...    +--.|++.......++  +.=++.|.+-|+          ||.. -.+..+..+.-+|+-|
T Consensus       185 ~~~~t----t~~~~v~~~~~~~~~Y~~~kvL~sf~t~~~----------~~~~~~~~~F~~ac~~Lk~~~  240 (253)
T cd06544         185 YGVPT----TVAKYVEFYDEVANNYPGKKVLASFSTDGE----------DGANIPGEIFIGGCKRLKKNG  240 (253)
T ss_pred             CCCCC----CHHHHHHHHHHHHHHCCCCCEEEEEECCCC----------CCCCCCCCHHHHHHHHHHHCC
T ss_conf             68998----989999999999972799816766560588----------766468406889999887558


No 317
>KOG1885 consensus
Probab=29.03  E-value=32  Score=15.93  Aligned_cols=69  Identities=28%  Similarity=0.363  Sum_probs=48.4

Q ss_pred             EEECCCCCHHHCCCCCCCCC-C--------CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC-
Q ss_conf             98613327100114310013-6--------5446289999999999999962897352466767799999999987788-
Q gi|255764463|r  126 IITDVALDPFTIHGHDGILC-D--------GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH-  195 (337)
Q Consensus       126 vi~DVcLc~YT~hGHcGi~~-~--------g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~-  195 (337)
                      ++--.||-+.- |-|-|+-+ +        +-|.|.++.+.+..-|-                  -|..||+-||.-|| 
T Consensus       185 ~lLspcLh~lP-~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~Rak------------------II~~iRkfld~rgFl  245 (560)
T KOG1885         185 ILLSPCLHMLP-HEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAK------------------IISYIRKFLDSRGFL  245 (560)
T ss_pred             HEECCHHCCCC-HHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH------------------HHHHHHHHHHHCCCE
T ss_conf             02052313487-66517776888999888998708889999999999------------------999999986544956


Q ss_pred             -CCCCEECHHHHHHHHHHCCH
Q ss_conf             -57730033666435430101
Q gi|255764463|r  196 -INVGIMPYVAKFNSSFYGPY  215 (337)
Q Consensus       196 -~~~~ImsYsaKfaS~fYgPF  215 (337)
                       ..||||+--+-  -+--.||
T Consensus       246 EVETPmmn~iaG--GA~AkPF  264 (560)
T KOG1885         246 EVETPMMNMIAG--GATAKPF  264 (560)
T ss_pred             EECCHHHCCCCC--CCCCCCE
T ss_conf             844465525468--6325760


No 318
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=28.94  E-value=31  Score=16.01  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=30.5

Q ss_pred             CCHHHHHHHHHHHHHC-CC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----CCCEEEEC
Q ss_conf             3114589999999624-99-899993461899999999888978899999999999772----69999820
Q gi|255764463|r  261 PGLPYLDVCFRIKEKF-GL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRA----GCDGIFTY  325 (337)
Q Consensus       261 Pa~~yLDii~~~k~~~-~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRA----GAd~IitY  325 (337)
                      ++.+.-..|+++++.. .. -.....+||-=+.+     =|+++-+....+...-+++.    |-+..++=
T Consensus       233 ~a~~~~P~i~~~~~~L~~~~Ga~~~~mSGSGstv-----Fglf~~~~~A~~a~~~l~~~~p~~~~~~~v~~  298 (308)
T PRK02534        233 VVLPEYPQVAKLLELLSSLPGCLGTMMSGSGPTC-----FALFEDQEQAEQALEQVREAFADPGLDAWVCQ  298 (308)
T ss_pred             HHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHH-----EEEECCHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             9887394999999999744798888997241000-----37978999999999999986789998689751


No 319
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=28.86  E-value=31  Score=16.02  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHCCCCC--CCEE-CHHHHHHHHHHCCHHH------HHHCCCCC-------CCCCCCCCCCCCHHHHHHHH
Q ss_conf             9999999998778857--7300-3366643543010167------53102446-------77774431572114788988
Q gi|255764463|r  182 RVQEIRKKLDSHGHIN--VGIM-PYVAKFNSSFYGPYRD------AISTRDLL-------KGDKKTYYLDPANVQEAIRE  245 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~--~~Im-sYsaKfaS~fYgPFRd------A~~S~p~~-------~gdr~sYQmd~~n~~eA~~e  245 (337)
                      -+.+||+.|+++||.+  |||| ..+.-=|..|--|+|-      |+--+|++       .|=-|=||+-+.-+.|-+|.
T Consensus       162 v~~~iR~~l~~~gF~EVETP~L~~stpEGArdflvPsr~~~~~fyaLpQSPQlyKQlLMvgG~dRyFqIarcFRdEd~r~  241 (706)
T PRK12820        162 IIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRP  241 (706)
T ss_pred             HHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCC
T ss_conf             99999999987798896687044567532457500244588765005668299999998628661799600112899998


Q ss_pred             HHHHHHCCCCEEEECCCHHHHH
Q ss_conf             8876640898799553114589
Q gi|255764463|r  246 ASIDIQESADMLLVKPGLPYLD  267 (337)
Q Consensus       246 ~~~D~~EGAD~lMVKPa~~yLD  267 (337)
                      -..     ..+.|+-.=|.|.|
T Consensus       242 dRq-----PEFTqlDiEmSF~d  258 (706)
T PRK12820        242 NRQ-----PEFTQLDIEASFID  258 (706)
T ss_pred             CCC-----CCEEEEEEEHHCCC
T ss_conf             879-----83406874213489


No 320
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.83  E-value=33  Score=15.88  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHCCCCC--CCEECHHH
Q ss_conf             999999998778857--73003366
Q gi|255764463|r  183 VQEIRKKLDSHGHIN--VGIMPYVA  205 (337)
Q Consensus       183 V~aIR~~Ld~~g~~~--~~ImsYsa  205 (337)
                      +.+||+.||.+||.+  |||+.-|+
T Consensus       148 ~~~iR~~ld~~gF~EiETPiLtkST  172 (585)
T COG0173         148 TKAIRNFLDDQGFLEIETPILTKST  172 (585)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             9999997765498573467414679


No 321
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.77  E-value=47  Score=14.82  Aligned_cols=182  Identities=23%  Similarity=0.249  Sum_probs=88.8

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCC
Q ss_conf             99999998889367633025633455-4454215765379999999997301-447986133271001143100136544
Q gi|255764463|r   72 EKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEI  149 (337)
Q Consensus        72 ~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~I  149 (337)
                      +|.-++.+-|-.-|        +.|+ .+||-.-|    .+-.||.|++-.| +..|-+-+-=-||..         |  
T Consensus        11 eEA~eAieGGAdIi--------DVKNP~EGSLGAN----FPWvIr~i~Ev~p~d~~vSAT~GDvpYKP---------G--   67 (235)
T COG1891          11 EEAIEAIEGGADII--------DVKNPAEGSLGAN----FPWVIREIREVVPEDQEVSATVGDVPYKP---------G--   67 (235)
T ss_pred             HHHHHHHHCCCCEE--------ECCCCCCCCCCCC----CHHHHHHHHHHCCCCEEEEEEECCCCCCC---------C--
T ss_conf             99999861788667--------4268465766688----70799999975856635324306778898---------5--


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEC-----------CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf             62899999999999999628973524-----------6676779999999998778857730033666435430101675
Q gi|255764463|r  150 VNDETIELISHAAVIQADAGADIIAP-----------SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA  218 (337)
Q Consensus       150 dND~Tl~~L~k~Al~~A~AGaDivAP-----------SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA  218 (337)
                          |   .+..|+-.|-+|||.+--           -+||.+-|.+.|+.            ++|.|---+=|+-..- 
T Consensus        68 ----T---~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~------------d~~k~VVAaGYaDa~R-  127 (235)
T COG1891          68 ----T---ASLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDF------------DPSKKVVAAGYADAHR-  127 (235)
T ss_pred             ----H---HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC------------CCCCEEEECCCCCHHH-
T ss_conf             ----4---8899887675077647873023665999999999999998613------------8774488614430121-


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHH-HHHHHHH
Q ss_conf             310244677774431572114788988887664089879955311458999999962499899993461899-9999998
Q gi|255764463|r  219 ISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYA-MIKAASL  297 (337)
Q Consensus       219 ~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYa-mi~~a~~  297 (337)
                      ++|            .+|-.--      +.-.+-|+|+.||-.|.      ++-|.     +|-++--+|-. .+..|-.
T Consensus       128 vgs------------v~Pl~~P------~vaa~ag~DvaMvDTai------KDGks-----lFdfm~~e~l~eFvd~Ah~  178 (235)
T COG1891         128 VGS------------VSPLLLP------EVAAEAGADVAMVDTAI------KDGKS-----LFDFMDEEELEEFVDLAHE  178 (235)
T ss_pred             CCC------------CCCCCCH------HHHHHCCCCEEEEECCC------CCCHH-----HHHHHCHHHHHHHHHHHHH
T ss_conf             167------------6823117------88986389889875000------36516-----7755059999999999987


Q ss_pred             CCCCCHH--HHHHHHHHHHHHHCCCEEEEC
Q ss_conf             8897889--999999999977269999820
Q gi|255764463|r  298 QGWINKN--DAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       298 ~g~~d~~--~~~~E~l~~~kRAGAd~IitY  325 (337)
                      .|+-.--  ..-.|.+-.+|+-|+|+|=--
T Consensus       179 hGL~~AlAGs~~~ehlp~l~eig~DivGvR  208 (235)
T COG1891         179 HGLEVALAGSLKFEHLPILKEIGPDIVGVR  208 (235)
T ss_pred             CCHHHHHCCCCCCCCCHHHHHHCCCEEEEC
T ss_conf             245877504455000527887188735520


No 322
>KOG2775 consensus
Probab=28.60  E-value=47  Score=14.80  Aligned_cols=128  Identities=17%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCHHHCCCCCCCCCCC-CCCHH
Q ss_conf             999888936763302563345544542157653799999999973014--479861332710011431001365-44628
Q gi|255764463|r   76 QVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALDPFTIHGHDGILCDG-EIVND  152 (337)
Q Consensus        76 ~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi~~~g-~IdND  152 (337)
                      -+.+.|+++-+-||--   .--+.+..-|-||.             +|  ++-.-|||---|-+|=.--|++-- .+--+
T Consensus       126 li~e~gl~aGi~FPtG---~SlN~cAAHyTpNa-------------Gd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F~  189 (397)
T KOG2775         126 LILENGLNAGIGFPTG---CSLNHCAAHYTPNA-------------GDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAFN  189 (397)
T ss_pred             HHHHCCCCCCCCCCCC---CCCCCHHHHCCCCC-------------CCCEEEEECCEEEEECCCCCCCEEEEEEEEEEEC
T ss_conf             9874551027667776---66210343068999-------------9834642065688740211067275345688607


Q ss_pred             ---HHHHHHHHHHHH--HHHCCCCEEECCCCCCCHHH-HHHHHHHHCCCCCCCEECHHHHHHHHHH----CCHHHHHH-C
Q ss_conf             ---999999999999--99628973524667677999-9999998778857730033666435430----10167531-0
Q gi|255764463|r  153 ---ETIELISHAAVI--QADAGADIIAPSEMMDGRVQ-EIRKKLDSHGHINVGIMPYVAKFNSSFY----GPYRDAIS-T  221 (337)
Q Consensus       153 ---~Tl~~L~k~Al~--~A~AGaDivAPSdMMDGrV~-aIR~~Ld~~g~~~~~ImsYsaKfaS~fY----gPFRdA~~-S  221 (337)
                         ..|-.-++-|..  .-+||.|+---      -|| +|.+.+.+-. ..+.=-+|-+|=.+++-    +|||=-+| |
T Consensus       190 p~~d~Ll~AvreaT~tGIkeaGiDvRlc------diG~aiqEVmeSyE-vEi~Gk~~~VKpIrnLnGHSI~~yrIH~gks  262 (397)
T KOG2775         190 PKYDPLLAAVREATNTGIKEAGIDVRLC------DIGEAIQEVMESYE-VEINGKTYQVKPIRNLNGHSIAQYRIHGGKS  262 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEH------HHHHHHHHHHHHEE-EEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf             5520899999988750265528402321------03688999766307-8767816200013135787433247625833


Q ss_pred             CCCCC
Q ss_conf             24467
Q gi|255764463|r  222 RDLLK  226 (337)
Q Consensus       222 ~p~~~  226 (337)
                      -|..+
T Consensus       263 VPiVk  267 (397)
T KOG2775         263 VPIVK  267 (397)
T ss_pred             CCEEC
T ss_conf             22244


No 323
>PRK02227 hypothetical protein; Provisional
Probab=28.41  E-value=48  Score=14.78  Aligned_cols=12  Identities=17%  Similarity=0.166  Sum_probs=5.3

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             999999988893
Q gi|255764463|r   72 EKIKQVADLGIP   83 (337)
Q Consensus        72 ~eie~~~~lGI~   83 (337)
                      +|+..+.+.|+-
T Consensus        11 ~EA~~a~~~gaD   22 (239)
T PRK02227         11 EEALEALEGGAD   22 (239)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999857999


No 324
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.32  E-value=48  Score=14.77  Aligned_cols=213  Identities=19%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf             88999999999999888936763302563345544542157653---799999999973014479861332710011431
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN---LINEGICAIKKNIPNIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg---lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc  141 (337)
                      ++.+.+++.+++.++.|..-+=+ |+  ++  +--|+.-..++-   =+--.|+.|++.| ++.|=.|    .|..    
T Consensus        35 ~~~~~a~~~a~~mi~~GAdiIDI-Gg--eS--TrPga~~vs~eeE~~Rl~pvi~~i~~~~-~v~iSID----T~~~----  100 (282)
T PRK11613         35 NSLIDAVKHANLMINAGATIIDV-GG--ES--TRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVD----TSKP----  100 (282)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE-CC--CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEE----CCCH----
T ss_conf             89999999999999889969997-98--25--8998986898999999999999999735-9729997----9988----


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf             0013654462899999999999999628973524-667677999999999877885773003366643543010167531
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADIIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS  220 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP-SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~  220 (337)
                                        +.|-.-.++|||||-= |...|-   .+-+..-+.+ ..+.+| ++               .
T Consensus       101 ------------------~Va~~ale~Ga~iINDIsg~~d~---~~~~~va~~~-~~~vlm-H~---------------~  142 (282)
T PRK11613        101 ------------------EVIRESAKAGAHIINDIRSLSEP---GALEAAAETG-LPVCLM-HM---------------Q  142 (282)
T ss_pred             ------------------HHHHHHHHCCCCEEECCCCCCCH---HHHHHHHHCC-CCEEEE-EC---------------C
T ss_conf             ------------------99999996397888663212486---5999999729-988998-06---------------8


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHCCC--CEEEECCCHH-------HHHHHHHHHHH--CCCCEEEEECCH
Q ss_conf             02446777744315721147889888876--64089--8799553114-------58999999962--499899993461
Q gi|255764463|r  221 TRDLLKGDKKTYYLDPANVQEAIREASID--IQESA--DMLLVKPGLP-------YLDVCFRIKEK--FGLPTFAYQVSG  287 (337)
Q Consensus       221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D--~~EGA--D~lMVKPa~~-------yLDii~~~k~~--~~~P~~aYqVSG  287 (337)
                      ..|..-.+...|. |+-..-....+...+  .+-|-  +=+++-||+-       .+.+++.+..-  ++.|+.+ -+|-
T Consensus       143 g~p~~m~~~~~y~-dvi~~v~~~f~~~i~~~~~~Gi~~~~IilDPGiGFgK~~~~n~~ll~~l~~~~~lg~PiLv-G~SR  220 (282)
T PRK11613        143 GNPKTMQEAPKYD-DVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLV-GMSR  220 (282)
T ss_pred             CCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECH
T ss_conf             9985533267635-2799999999999999998799947499806877678878899999838998537998799-7047


Q ss_pred             HHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             899999999888978--89999999999977269999820189999998
Q gi|255764463|r  288 EYAMIKAASLQGWIN--KNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       288 EYami~~a~~~g~~d--~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                       =+||.......--+  .-.+..+. .++. .||++|=+-=.++..+-+
T Consensus       221 -Ksfig~~~~~~~~eRl~gTla~~~-~a~~-~Ga~ilRVHDV~e~~~ai  266 (282)
T PRK11613        221 -KSMIGQLLNVGPSERLSGSLACAV-IAAM-QGAQIIRVHDVKETVEAM  266 (282)
T ss_pred             -HHHHHHHHCCCHHHHHHHHHHHHH-HHHH-CCCCEEEECCHHHHHHHH
T ss_conf             -789998718996870379999999-9998-799999958989999999


No 325
>pfam01129 ART NAD:arginine ADP-ribosyltransferase.
Probab=28.27  E-value=19  Score=17.52  Aligned_cols=36  Identities=14%  Similarity=0.464  Sum_probs=27.3

Q ss_pred             CCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             77300336664354301016753102446777744315721
Q gi|255764463|r  197 NVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPA  237 (337)
Q Consensus       197 ~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~  237 (337)
                      .+.||.|+.  .|.+|-+|-.|+-++.   ..|..|--.+.
T Consensus        66 ~iAi~aYT~--~~~~y~~FN~Avr~ag---~S~~~Y~~~F~  101 (222)
T pfam01129        66 GIALLAYTS--SSPLYREFNEAVREAG---RSREHYLHNFH  101 (222)
T ss_pred             EEEEEEECC--CCHHHHHHHHHHHHCC---CCHHHHHCCCC
T ss_conf             899999828--8658999999999717---89789731785


No 326
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B  (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20).  The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits.  Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff.  Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in 
Probab=28.22  E-value=48  Score=14.76  Aligned_cols=214  Identities=14%  Similarity=0.107  Sum_probs=96.6

Q ss_pred             CHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCC---------CCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             988999863477888773311666758988110488878632---------88999999999999888936763302563
Q gi|255764463|r   23 SNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMR---------MSIDVAVEKIKQVADLGIPAIAIFPNIPM   93 (337)
Q Consensus        23 ~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R---------~Sid~L~~eie~~~~lGI~av~LFp~I~~   93 (337)
                      -+.+++++..-.+.+=+ .+=+-++|..+=+-+|++.|..-.         ||.+.+.+-|+.+.+.||+-|-=+ =+|-
T Consensus        17 ~~~ik~~id~ma~~KlN-~lH~HLtDdqgwrlei~~~P~Lt~~Ga~~~~~~YT~~d~~eiv~yA~~rgI~viPEi-D~PG   94 (348)
T cd06562          17 VDSIKRTIDAMAYNKLN-VLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI-DTPG   94 (348)
T ss_pred             HHHHHHHHHHHHHHCCC-EEEEEEECCCCCEEECCCCCCHHHCCCCCCCCEECHHHHHHHHHHHHHCCCEEEECC-CCCH
T ss_conf             99999999999983895-678857648886431688702432378898872769999999999997598896547-8850


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf             3455445421576537999999999730144798613327100-1143100136544628999999999999996-----
Q gi|255764463|r   94 DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT-IHGHDGILCDGEIVNDETIELISHAAVIQAD-----  167 (337)
Q Consensus        94 ~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT-~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~-----  167 (337)
                      +.                   ++.-+.+|++..-+. -.+... .+..+|.+   .+.|++|.+.|.+.---.++     
T Consensus        95 H~-------------------~a~~~~~p~l~~~~~-~~~~~~~~~~~~~~L---dp~~~~t~~fl~~vl~Ev~~lFp~~  151 (348)
T cd06562          95 HT-------------------GSWGQGYPELLTGCY-AVWRKYCPEPPCGQL---NPTNPKTYDFLKTLFKEVSELFPDK  151 (348)
T ss_pred             HH-------------------HHHHHHCHHHCCCCC-CCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             35-------------------789985866417877-766674447887521---7897569999999999999857766


Q ss_pred             ---CCCCEEECCCCCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHH---C----CHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             ---289735246676779999999998778857-730033666435430---1----01675310244677774431572
Q gi|255764463|r  168 ---AGADIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFY---G----PYRDAISTRDLLKGDKKTYYLDP  236 (337)
Q Consensus       168 ---AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fY---g----PFRdA~~S~p~~~gdr~sYQmd~  236 (337)
                         -|.|=|....=-  .--++++.+.++|.++ ..+.+|=..-.+.+-   |    -+-|++...+.. -++.+-=+--
T Consensus       152 yiHiGGDEv~~~~W~--~~p~~~~~m~~~g~~~~~~lq~~F~~~~~~~l~~~Gk~~i~W~e~~~~~~~~-~~~~~vv~~W  228 (348)
T cd06562         152 YFHLGGDEVNFNCWN--SNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGVYL-LPKDTIVQVW  228 (348)
T ss_pred             EEEECCCCCCHHHHC--CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCC-CCCCEEEEEE
T ss_conf             366267446555541--6788999999729999999999999999999997598178732210167777-9997299970


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH
Q ss_conf             11478898888766408987995531145899
Q gi|255764463|r  237 ANVQEAIREASIDIQESADMLLVKPGLPYLDV  268 (337)
Q Consensus       237 ~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDi  268 (337)
                      ++...    ...=.+.|-+.||--..-.|||.
T Consensus       229 ~~~~~----~~~~~~~G~~vI~s~~~~~YlD~  256 (348)
T cd06562         229 GGSDE----LKNVLAAGYKVILSSYDFWYLDC  256 (348)
T ss_pred             CCCHH----HHHHHHCCCCEEEECCCCEEEEC
T ss_conf             69439----99999839989981898578726


No 327
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=28.01  E-value=32  Score=15.96  Aligned_cols=59  Identities=14%  Similarity=0.126  Sum_probs=22.5

Q ss_pred             HHHHHHHCCCCEEEEECCHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             999996249989999346189999999-988897889999999999977269999820189999998
Q gi|255764463|r  269 CFRIKEKFGLPTFAYQVSGEYAMIKAA-SLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       269 i~~~k~~~~~P~~aYqVSGEYami~~a-~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                      ||.+..++.--+....- ..|..+... ..+|-.+++.--.=+..+|.+      .++|-..+++||
T Consensus       128 iRAAAKN~~~V~v~~dp-~dY~~~i~~l~~~g~~~~~~R~~lA~kAF~~------ta~YD~~I~~~L  187 (187)
T cd01421         128 LRAAAKNYKDVTVLVDP-ADYQKVLEELKSNGSISEETRRRLALKAFAH------TAEYDAAISNYL  187 (187)
T ss_pred             HHHHHHCCCCEEEECCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHC
T ss_conf             99998268812876799-9999999999976999999999999999999------999999999639


No 328
>TIGR02783 TrbL_P P-type conjugative transfer protein TrbL; InterPro: IPR014150   This entry represents TrbL, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer , . TrbL is a homologue of the F-type TraG protein (which is believed to be a mating pair stabilisation pore-forming protein, IPR012931 from INTERPRO) as well as the vir system VirB6 protein ..
Probab=27.98  E-value=37  Score=15.50  Aligned_cols=58  Identities=24%  Similarity=0.361  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH-----HHHHHHCC---CCCCCEEC--HHHHHHHH
Q ss_conf             9999999999999962897352466767799999-----99998778---85773003--36664354
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEI-----RKKLDSHG---HINVGIMP--YVAKFNSS  210 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aI-----R~~Ld~~g---~~~~~Ims--YsaKfaS~  210 (337)
                      .|+..+...|...-++-+|.+.|++|-|-=+..-     ++.+|+..   ..=..|-|  +|+-|.|+
T Consensus        88 nsl~~~ga~a~g~~~~~adf~sP~~~~~~g~~~~lGiv~~~~~~~~~n~~~~F~~~fSGnfsaafssa  155 (351)
T TIGR02783        88 NSLAQIGAGALGLSESEADFLSPGNIFDVGLDIALGIVLSKVLDSASNLGNGFSSIFSGNFSAAFSSA  155 (351)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf             99999887520011001112484899999999999999999999886410322454302567777531


No 329
>pfam00933 Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain.
Probab=27.90  E-value=30  Score=16.16  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=15.2

Q ss_pred             HHHHHHCCCCEEEEEECCCCCC--CCCCCCCCCCCC
Q ss_conf             9999988893676330256334--554454215765
Q gi|255764463|r   74 IKQVADLGIPAIAIFPNIPMDL--RNNTGSHIIDPD  107 (337)
Q Consensus        74 ie~~~~lGI~av~LFp~I~~~~--Kd~~GseA~n~d  107 (337)
                      .+++..+||+- .+-|+++-..  ....+.++|.+|
T Consensus        55 a~el~~~Gin~-~~aPv~Dv~~~~~~~r~~rsfgeD   89 (225)
T pfam00933        55 GEEARAKGIDV-ILAPVVDLGRDPRWGRNFESFSED   89 (225)
T ss_pred             HHHHHHCCCCE-EECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999809987-614652577788765121344788


No 330
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.86  E-value=49  Score=14.71  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             899999999999999628973524
Q gi|255764463|r  152 DETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       152 D~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      ++.++..++.|...-+||.|.|--
T Consensus       140 ~~ii~~f~~AA~rA~~AGfDgVEi  163 (353)
T cd04735         140 EDIIDAFGEATRRAIEAGFDGVEI  163 (353)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             999999999999999839998997


No 331
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=27.81  E-value=49  Score=14.71  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             788988887664-089879955311458999999962499899
Q gi|255764463|r  240 QEAIREASIDIQ-ESADMLLVKPGLPYLDVCFRIKEKFGLPTF  281 (337)
Q Consensus       240 ~eA~~e~~~D~~-EGAD~lMVKPa~~yLDii~~~k~~~~~P~~  281 (337)
                      .+.+.++..... +|||.+|.-==.+..-.=+.+++.+++||.
T Consensus       164 ~~~l~~Aa~~L~~~gadlivLDCiGYt~~~r~~~~~~~g~PVi  206 (221)
T pfam07302       164 EDRLEEAARELLDQGADLIVLDCIGYTQAMKDMLQEALGKPVL  206 (221)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf             8999999999997598999998877749999999998699999


No 332
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase; InterPro: IPR006269   These sequences describe 2-dehydro-3-deoxyphosphooctonate aldolase. Alternate names include 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate.   phosphoenolpyruvate + D-arabinose 5-phosphate + H_2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate    In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. ; GO: 0008676 3-deoxy-8-phosphooctulonate synthase activity, 0008152 metabolic process, 0005737 cytoplasm.
Probab=27.76  E-value=49  Score=14.70  Aligned_cols=117  Identities=23%  Similarity=0.319  Sum_probs=77.4

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHH----H-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHH--HHHH
Q ss_conf             1166675898811048887863288999999999999----8-8893676330256334554454215765379--9999
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVA----D-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI--NEGI  114 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~----~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv--~rAI  114 (337)
                      .|+|+--|.++-|           |.|.+++.++++.    + +||+  .+| +-.=+|=+=+-.++|.--|+.  -+.+
T Consensus         1 ~~f~LiAGPCvIE-----------S~d~~L~~A~~l~~~~~k~~gi~--fiF-KsSFDKANRtS~~SfRGpGle~GL~iL   66 (279)
T TIGR01362         1 EKFFLIAGPCVIE-----------SEDHALRIAEKLKELTSKSLGIP--FIF-KSSFDKANRTSINSFRGPGLEEGLKIL   66 (279)
T ss_pred             CCCEEECCCCHHH-----------HHHHHHHHHHHHHHHHHHCCCCC--CEE-ECCCHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             9840642877535-----------68999999888776631202667--457-234101232110243688878999999


Q ss_pred             HHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH---HHHHHCCC-------CEEECCCCC
Q ss_conf             999973014479861332710011431001365446289999999999---99996289-------735246676
Q gi|255764463|r  115 CAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAA---VIQADAGA-------DIIAPSEMM  179 (337)
Q Consensus       115 r~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~A---l~~A~AGa-------DivAPSdMM  179 (337)
                      +++|++| ++-|+|||=     +.=||-.+.+ .+|-=..=.-||+|-   +.-|+-|.       ..+||.||-
T Consensus        67 ~kvK~~f-G~pi~TDVH-----E~~q~~~vAe-VvDilQiPAFLCRQTDLl~AaA~TG~ivNvKKGQFLsP~dM~  134 (279)
T TIGR01362        67 QKVKEEF-GVPILTDVH-----ESSQAEPVAE-VVDILQIPAFLCRQTDLLVAAAKTGKIVNVKKGQFLSPWDMK  134 (279)
T ss_pred             HHHHHHC-CCCCCCCCC-----CCHHHHHHCE-EEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH
T ss_conf             9865652-897023547-----7210220041-300110661321146899999823986860588638712115


No 333
>pfam06850 PHB_depo_C PHB de-polymerase C-terminus. This family represents the C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=27.68  E-value=32  Score=15.91  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=31.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf             7995531145899999996249989999346189999
Q gi|255764463|r  256 MLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMI  292 (337)
Q Consensus       256 ~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami  292 (337)
                      -+|==||-+|||.|+.+=++..+|-+-+.|-|+=--+
T Consensus        93 avmDlpaefYL~Tv~~VFqe~~L~~G~~~~~G~~Vd~  129 (203)
T pfam06850        93 AVMDLTAEFYLQTVDTVFQEHALPQGEFTHRGRPVDL  129 (203)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCEECCH
T ss_conf             7706969999999999998482557805789998268


No 334
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=27.64  E-value=49  Score=14.69  Aligned_cols=47  Identities=17%  Similarity=0.270  Sum_probs=23.5

Q ss_pred             CCCEEEECCCCCEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             31166675898811048887863288-9999999999998889367633
Q gi|255764463|r   41 ILPIFLTSGEKTVESINSMPDVMRMS-IDVAVEKIKQVADLGIPAIAIF   88 (337)
Q Consensus        41 I~PiFV~eg~~~k~~I~SMPGv~R~S-id~L~~eie~~~~lGI~av~LF   88 (337)
                      +-|-+|+=-++.++++.|=-|-.--+ .+.|.+.++++.+.||+ |-||
T Consensus        83 ~kP~qvtLVPE~r~elTTegGld~~~~~~~L~~~i~~lk~~gir-vSlF  130 (239)
T pfam03740        83 TKPHQVTLVPEKREEITTEGGLDVVAQLEKLKPAIRRLKNAGIR-VSLF  130 (239)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE-EEEE
T ss_conf             49985898889998735688806334068999999998607853-8997


No 335
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=27.61  E-value=9.3  Score=19.58  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHCCCC--CCCEECHHHH-HHHHHHCCHHH------HHHCCCCC-------CCCCCCCCCCCCHHHHHHHH
Q ss_conf             999999999877885--7730033666-43543010167------53102446-------77774431572114788988
Q gi|255764463|r  182 RVQEIRKKLDSHGHI--NVGIMPYVAK-FNSSFYGPYRD------AISTRDLL-------KGDKKTYYLDPANVQEAIRE  245 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~--~~~ImsYsaK-faS~fYgPFRd------A~~S~p~~-------~gdr~sYQmd~~n~~eA~~e  245 (337)
                      -+.+||+.|+++||.  +||||.-|+- =|.-|.=|+|-      |+.-+|.+       .|=.|-||+-|.-+.|.++.
T Consensus       148 i~~~iR~fl~~~gFiEVeTPiL~~s~~eGA~~F~vpsr~~~~~fyaL~qSPQLykq~L~vgG~erVyeig~~FRnE~~~t  227 (587)
T PRK00476        148 VTSAIRNFLDDNGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRA  227 (587)
T ss_pred             HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf             99999999997597400475432568666644301310578855135679799999988517552799643123888876


Q ss_pred             HHHHHHCCCCEEEECCCHHHH
Q ss_conf             887664089879955311458
Q gi|255764463|r  246 ASIDIQESADMLLVKPGLPYL  266 (337)
Q Consensus       246 ~~~D~~EGAD~lMVKPa~~yL  266 (337)
                      -.     -+.+.|+-+=|.|.
T Consensus       228 ~r-----~pEFt~lE~E~af~  243 (587)
T PRK00476        228 DR-----QPEFTQIDIEMSFV  243 (587)
T ss_pred             CC-----CCHHHEEEHHHHCC
T ss_conf             66-----82342311111116


No 336
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=27.60  E-value=39  Score=15.39  Aligned_cols=32  Identities=9%  Similarity=0.105  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCHHHHHHHHCCC
Q ss_conf             511266557888585631-28988999863477
Q gi|255764463|r    3 NTNAISHKICCHRRMRRN-RKSNWIREMVREHR   34 (337)
Q Consensus         3 ~~~~is~~~~p~~R~RRl-R~~~~iR~Lv~Et~   34 (337)
                      ++++...+..|++|..++ ..+.++|++++|-.
T Consensus        19 kvTk~~~~~r~s~rkg~~~k~~kfVR~iirEV~   51 (104)
T PTZ00196         19 VTTRRPRQPSSNDRYAVPHKKLRAVKAIIADLV   51 (104)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             257788888855456752156899999999984


No 337
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=27.50  E-value=8  Score=20.01  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             CCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf             88786328899999----99999998889367633025633455445421576537999999999730144798613327
Q gi|255764463|r   58 SMPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD  133 (337)
Q Consensus        58 SMPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc  133 (337)
                      ..-|+.|-..|..-    +...++++.|.=.=-+.|+..++.+.-.-.|...+ +.....+.++|-.|..-+.+      
T Consensus       181 ~~~gIsRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvPv~~~~~~~~~~De~~R~-~tt~e~La~L~P~F~~~Gtv------  253 (405)
T PRK07851        181 QLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSKDDGPRA-GTTYEAVSQLKPVFRPDGTV------  253 (405)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEECCCCCC-CCCHHHHHHCCCCCCCCCCE------
T ss_conf             98698999999999999999999886598602145676289978981477226-88866685078641568867------


Q ss_pred             HHHCCCCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECH
Q ss_conf             10011431001365----44628999999999----99999628973524667677999999999877885--7730033
Q gi|255764463|r  134 PFTIHGHDGILCDG----EIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPY  203 (337)
Q Consensus       134 ~YT~hGHcGi~~~g----~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsY  203 (337)
                         +.|++--+.||    -+-..+..+.|.-.    -+.++.+|+|   |..|--|-|.+||++|+.+|.+  |+-+.--
T Consensus       254 ---TAgNaS~~~DGAAavll~se~~a~~~gl~Plari~~~~~~g~d---P~~m~~~Pv~A~~~~L~~agl~~~Did~~Ei  327 (405)
T PRK07851        254 ---TAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLS---PEIMGLGPIEASKQALARAGMTIDDIDLVEI  327 (405)
T ss_pred             ---ECCCCCCCCCHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCC---HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf             ---5543786543469988727999997799815999954005648---7884618899999999976998024875564


Q ss_pred             HHHHHHHH
Q ss_conf             66643543
Q gi|255764463|r  204 VAKFNSSF  211 (337)
Q Consensus       204 saKfaS~f  211 (337)
                      --=||+.-
T Consensus       328 nEAFA~q~  335 (405)
T PRK07851        328 NEAFAVQV  335 (405)
T ss_pred             EHHHHHHH
T ss_conf             06678889


No 338
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=27.15  E-value=50  Score=14.63  Aligned_cols=42  Identities=17%  Similarity=0.057  Sum_probs=14.3

Q ss_pred             CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf             3114589999999624-99899993461899999999888978
Q gi|255764463|r  261 PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN  302 (337)
Q Consensus       261 Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d  302 (337)
                      |.+.=||+++.+++.. ..||..---.++-..++.|-..|..|
T Consensus        60 Pd~~Glell~~lR~~~~~~~VI~ITa~~d~~~v~~Al~~Ga~D  102 (239)
T PRK10430         60 QQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVD  102 (239)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCHH
T ss_conf             9997899999999858998199997268899999999839503


No 339
>KOG1349 consensus
Probab=26.96  E-value=43  Score=15.06  Aligned_cols=50  Identities=18%  Similarity=0.167  Sum_probs=24.7

Q ss_pred             HHHHHHHHCCCCCCCEECHHHHHHH---HHHCCHHHHHHCCCCCCC-CCCCCCCCC
Q ss_conf             9999998778857730033666435---430101675310244677-774431572
Q gi|255764463|r  185 EIRKKLDSHGHINVGIMPYVAKFNS---SFYGPYRDAISTRDLLKG-DKKTYYLDP  236 (337)
Q Consensus       185 aIR~~Ld~~g~~~~~ImsYsaKfaS---~fYgPFRdA~~S~p~~~g-dr~sYQmd~  236 (337)
                      +|.+.-++.-|....+|-=++.=+|   -||.|=-=|++|+.  .| +--||+.|+
T Consensus       170 ai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~--~ge~SySh~~d~  223 (309)
T KOG1349         170 AIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSL--VGEPSYSHHSDS  223 (309)
T ss_pred             HHHHHHHHHHHCEEEEEEECCCHHHHHHHHCCCCEEEEEECC--CCCCCCCCCCCC
T ss_conf             999999863232489983211067788751389758974122--587532347874


No 340
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=26.92  E-value=51  Score=14.60  Aligned_cols=141  Identities=18%  Similarity=0.244  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEECCCCCHHH----------CCCCCCCCCCC-CCCHHHH-HHHHHHHHHHHHHCCCCEEE
Q ss_conf             537999999999730144798613327100----------11431001365-4462899-99999999999962897352
Q gi|255764463|r  107 DNLINEGICAIKKNIPNIGIITDVALDPFT----------IHGHDGILCDG-EIVNDET-IELISHAAVIQADAGADIIA  174 (337)
Q Consensus       107 dglv~rAIr~IK~~fpdl~vi~DVcLc~YT----------~hGHcGi~~~g-~IdND~T-l~~L~k~Al~~A~AGaDivA  174 (337)
                      .|+..-.|-.|-+..+  .-++=+=+|||-          .||-+=+++|| +.|-|-- -|+..         +.+.-.
T Consensus        16 KGi~~aSig~ll~~~g--~~v~~~K~DpYlNvD~Gtm~P~eHGEVfV~~DG~EtDlDlG~YERFl---------~~~l~~   84 (275)
T pfam06418        16 KGITAASLGRLLKSRG--LKVTIQKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFL---------DINLTK   84 (275)
T ss_pred             CHHHHHHHHHHHHHCC--CEEEEEECCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHC---------CCCCCC
T ss_conf             1899999999999679--63678741563123888778331560787378740147675234314---------777566


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             46676779999999998778857730033666435430101675310244677774431572114788988887664089
Q gi|255764463|r  175 PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA  254 (337)
Q Consensus       175 PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA  254 (337)
                      -+.+--|+|-.  +.+++                        +--   ..+.  -+|-|+-|+-.+|=.+-+..-..+++
T Consensus        85 ~~niTtGkiy~--~Vi~k------------------------ER~---G~YL--GkTVQvIPHiTdeIk~~I~~~a~~~~  133 (275)
T pfam06418        85 DNNITTGKIYS--SVIEK------------------------ERR---GDYL--GKTVQVIPHITDEIKERIRRVAAKGA  133 (275)
T ss_pred             CCCCCCHHHHH--HHHHH------------------------HHC---CCCC--CCCEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             66634018899--99988------------------------755---6758--97158778856999999998556789


Q ss_pred             CEEEECCC--------HHHHHHHHHHHHHCCC-CEEEE--------ECCHHH
Q ss_conf             87995531--------1458999999962499-89999--------346189
Q gi|255764463|r  255 DMLLVKPG--------LPYLDVCFRIKEKFGL-PTFAY--------QVSGEY  289 (337)
Q Consensus       255 D~lMVKPa--------~~yLDii~~~k~~~~~-P~~aY--------qVSGEY  289 (337)
                      |+++|.=|        +|||.-||+++..... -++--        ..+||.
T Consensus       134 Di~ivEiGGTVGDIEs~pFlEAiRQl~~~~g~~n~~fiHvtlvP~l~~~gE~  185 (275)
T pfam06418       134 DVVIVEIGGTVGDIESLPFLEAIRQFRLEVGRENVLFIHVTLVPYLKAAGEL  185 (275)
T ss_pred             CEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCC
T ss_conf             7899975760100102289999999988728775699998732443688754


No 341
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=26.88  E-value=37  Score=15.50  Aligned_cols=45  Identities=24%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             HHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHHHH
Q ss_conf             9962897352466767799999999987788--57730033666435430
Q gi|255764463|r  165 QADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSSFY  212 (337)
Q Consensus       165 ~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~fY  212 (337)
                      ++.+|+|   |.+|.-|-|.++|+.|+.+|.  .|+-+.-.---||+.--
T Consensus        10 ~~~~g~~---P~~~~~ap~~A~~~lL~r~gl~~~Did~~EinEAFA~~~l   56 (123)
T pfam02803        10 YATVGVD---PAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQAL   56 (123)
T ss_pred             EEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEECHHHHHHHH
T ss_conf             9998459---8896136999999999982998554664564145677789


No 342
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=26.72  E-value=51  Score=14.58  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=82.8

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             898811048887863288999999----9999998889367633025633455445421576537999999999730144
Q gi|255764463|r   49 GEKTVESINSMPDVMRMSIDVAVE----KIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI  124 (337)
Q Consensus        49 g~~~k~~I~SMPGv~R~Sid~L~~----eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl  124 (337)
                      ..+...+|.-+|.. |+++|..+-    .+--...+|..--..=+.- +.......++....-+.+..+|+.+|+.- ++
T Consensus        26 ~~~~~~~iTl~p~~-rf~~DAaIiffsDIL~ip~AlG~~v~f~~g~G-P~~~~~~~~~~~~~l~~v~~~i~~~~~~~-~v  102 (306)
T cd00465          26 TSKAEWGITLVEPE-EIPLDVIPVHEDDVLKVAQALGEWAFRYYSQA-PSVPEIDEEEDPFREAPALEHITAVRSLE-EF  102 (306)
T ss_pred             CCCCCCEEEECCCC-CCCCCEEEECCCCCEECHHHCCCCEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CC
T ss_conf             98654238731510-16888566538860218768199547950758-98998774056664478999999986357-86


Q ss_pred             EEEE----CCCCCHHHCCCCCCCC--CCC----CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH-----------
Q ss_conf             7986----1332710011431001--365----446289999999999999962897352466767799-----------
Q gi|255764463|r  125 GIIT----DVALDPFTIHGHDGIL--CDG----EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRV-----------  183 (337)
Q Consensus       125 ~vi~----DVcLc~YT~hGHcGi~--~~g----~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV-----------  183 (337)
                      -+|-    =--|..|---|+.-.-  .+.    .-.-|...+...+-...|++||||+|---|.-=|.+           
T Consensus       103 pLIGFaGaPwTla~Ymieg~~sk~~~~~~pe~~~~LL~~lt~~~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~  182 (306)
T cd00465         103 PTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKK  182 (306)
T ss_pred             CEEEECCCHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             23764586599999998381089998879999999999999999999999998488999974343342311039999999


Q ss_pred             ---HHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf             ---999999987788577300336664354301016
Q gi|255764463|r  184 ---QEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR  216 (337)
Q Consensus       184 ---~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR  216 (337)
                         ..+|+..+.....+++|.-+ .|-++..|-+|-
T Consensus       183 f~lp~~~~I~~~~~~~~vPiI~F-~~G~~~~~l~~~  217 (306)
T cd00465         183 FALPAYKKVAEYKAAGEVPIVHH-SCYDAADLLEEM  217 (306)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEE-ECCCHHHHHHHH
T ss_conf             99999999999745799988998-328667789999


No 343
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA.  NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host.   The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue.  The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is 
Probab=26.64  E-value=51  Score=14.57  Aligned_cols=60  Identities=17%  Similarity=0.358  Sum_probs=34.8

Q ss_pred             HCCCCEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             40898799553114589999999624998-99993461899999999888978899999999999
Q gi|255764463|r  251 QESADMLLVKPGLPYLDVCFRIKEKFGLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF  314 (337)
Q Consensus       251 ~EGAD~lMVKPa~~yLDii~~~k~~~~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~  314 (337)
                      .|---++|+-|+..|-|....++++|+.- -.--.+-.|=-||--+.|.   |+ +.++++....
T Consensus        10 ~~DtR~Imi~p~~ef~ef~~kIr~KFG~r~~lkik~kDdGdmITm~Dqd---Dl-dm~i~~ar~~   70 (86)
T cd06408          10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDDGDMITMGDQD---DL-DMAIDTARSE   70 (86)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCHH---HH-HHHHHHHHHH
T ss_conf             4767899955987779999999987384543378985489858861678---89-9999999999


No 344
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=26.51  E-value=51  Score=14.56  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=17.0

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             667677999999999877885773003
Q gi|255764463|r  176 SEMMDGRVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       176 SdMMDGrV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      |+=+.--.+.+|+.||+.||.++.|+.
T Consensus       265 SGDLa~Ls~~vR~~LD~aG~~~~kI~a  291 (466)
T PRK09243        265 SGDLAYLSKKVRKMLDEAGFTDTKIVA  291 (466)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             523999999999999767888848999


No 345
>PRK06689 consensus
Probab=26.48  E-value=3.2  Score=22.67  Aligned_cols=139  Identities=18%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-C----HHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             86328899999----999999988893676330256334554454215765-3----79999999997301447986133
Q gi|255764463|r   61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-N----LINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-g----lv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      |+.|--.|...    +...++++.|.=.=-+.|+.-++.|   +...++.| +    .....+..+|-.|.+-+.+|-= 
T Consensus       168 gIsReeqD~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~---~~~~~~~De~~R~~tt~ekLa~L~P~F~~~GtvTAg-  243 (391)
T PRK06689        168 EITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERR---KEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAG-  243 (391)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC---CCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC-
T ss_conf             9899999999999999999999749975438757743677---745641576645688866762479753467866155-


Q ss_pred             CCHHHCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHH
Q ss_conf             271001143100136544628999999999----9999962897352466767799999999987788--5773003366
Q gi|255764463|r  132 LDPFTIHGHDGILCDGEIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVA  205 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsa  205 (337)
                      =++-.++|-+.++    +-..+..+.+.-.    =+.++.+|+|   |..|--|-|.+||++|+.+|.  .|+-+.----
T Consensus       244 Nss~~~DGAaa~l----l~s~~~a~~~gl~plari~~~~~~g~~---P~~m~~gPv~A~~k~L~ragl~~~Did~~EinE  316 (391)
T PRK06689        244 NASGLNDGSAVLV----LMSEEKAKEKGLQPLARIVGYSVAGVD---PKIMGIGPAPAIRKGLEKVDWSLEDADLLEINE  316 (391)
T ss_pred             CCCCCCCHHHHHH----HHCHHHHHHCCCCCEEEEECEEEEECC---HHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEH
T ss_conf             4675443899999----857999997799814999781899889---899877499999999998599864588899615


Q ss_pred             HHHHH
Q ss_conf             64354
Q gi|255764463|r  206 KFNSS  210 (337)
Q Consensus       206 KfaS~  210 (337)
                      =||+.
T Consensus       317 AFA~q  321 (391)
T PRK06689        317 AFAAQ  321 (391)
T ss_pred             HHHHH
T ss_conf             66889


No 346
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=26.46  E-value=4.4  Score=21.78  Aligned_cols=70  Identities=10%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             HHHHHHHHC-CCCCHHHC---CCCEEEECC---CCCEEEC---CCCC-CCCCCCHHH-------HHHHHHHHHHCCCCEE
Q ss_conf             889998634-77888773---311666758---9881104---8887-863288999-------9999999998889367
Q gi|255764463|r   24 NWIREMVRE-HRLSVSDL---ILPIFLTSG---EKTVESI---NSMP-DVMRMSIDV-------AVEKIKQVADLGIPAI   85 (337)
Q Consensus        24 ~~iR~Lv~E-t~Ls~~dL---I~PiFV~eg---~~~k~~I---~SMP-Gv~R~Sid~-------L~~eie~~~~lGI~av   85 (337)
                      ..++.++.. +.|.+++.   |+=-++..+   -|.-..+   .++| .+--+++|.       .+...-..+..|-..+
T Consensus        33 ~~i~~~l~r~~~l~~~~Id~vi~G~v~~~~~~g~n~aR~aaL~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa~~I~~G~~dv  112 (387)
T PRK08947         33 HLMRALLARNPALDPAEIEDIIWGCVQQTLEQGFNIARNAALLAGIPHTVPAVTVNRLCGSSMQALHDAARAIMTGDGDV  112 (387)
T ss_pred             HHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             99999997458969899898999706655443335999999976999888616640142379999999998652799778


Q ss_pred             EEEECCCC
Q ss_conf             63302563
Q gi|255764463|r   86 AIFPNIPM   93 (337)
Q Consensus        86 ~LFp~I~~   93 (337)
                      .|=+++++
T Consensus       113 vlaGGvEs  120 (387)
T PRK08947        113 FLIGGVEH  120 (387)
T ss_pred             EEEEEECC
T ss_conf             99841022


No 347
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=26.36  E-value=42  Score=15.17  Aligned_cols=15  Identities=7%  Similarity=-0.080  Sum_probs=8.1

Q ss_pred             HHHHHHCCCCEEEEE
Q ss_conf             999998889367633
Q gi|255764463|r   74 IKQVADLGIPAIAIF   88 (337)
Q Consensus        74 ie~~~~lGI~av~LF   88 (337)
                      .+.++..|+..|--+
T Consensus        61 ~k~l~~~g~~rvf~i   75 (280)
T cd00777          61 KQLLMVSGFDRYFQI   75 (280)
T ss_pred             HHHHHHCCCCCCEEE
T ss_conf             999985687775798


No 348
>TIGR00303 TIGR00303 conserved hypothetical protein TIGR00303; InterPro: IPR002805   Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin . It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop , .    Vitamin B_12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes . The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin . Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) . One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction .   This entry represents a group of proteins predicted to have nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity..
Probab=26.31  E-value=11  Score=19.20  Aligned_cols=13  Identities=46%  Similarity=0.917  Sum_probs=7.4

Q ss_pred             EEECCCHHHHHHH
Q ss_conf             9955311458999
Q gi|255764463|r  257 LLVKPGLPYLDVC  269 (337)
Q Consensus       257 lMVKPa~~yLDii  269 (337)
                      +||||..||+||=
T Consensus        95 l~vkP~vPyI~ld  107 (350)
T TIGR00303        95 LSVKPKVPYINLD  107 (350)
T ss_pred             CCCCCCCCEEECC
T ss_conf             8688968866078


No 349
>pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.
Probab=26.19  E-value=33  Score=15.84  Aligned_cols=63  Identities=21%  Similarity=0.142  Sum_probs=41.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             6777744315721147889888876640898799553114589999999624998999934618999999
Q gi|255764463|r  225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKA  294 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~  294 (337)
                      +.-||..|..|+-..---+-|+.+-|.|||.|+=-|----.=||+..+|..-       +|.+|-..++.
T Consensus       111 ~HI~K~~F~vPFVCGarnLGEAlRRI~EGAaMIRTKGEaGTGnVvEAVrH~R-------~i~~eI~~l~~  173 (209)
T pfam01680       111 FHIDKKKFTVPFVCGARNLGEALRRIWEGAAMIRTKGEAGTGNVVEAVRHMR-------LMNGEIRRLQN  173 (209)
T ss_pred             CCCCCCCCCCCEEECCCCHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHH-------HHHHHHHHHHC
T ss_conf             0554101677643068873899998870142134678789875999999999-------99999999976


No 350
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=26.06  E-value=17  Score=17.80  Aligned_cols=45  Identities=31%  Similarity=0.412  Sum_probs=30.0

Q ss_pred             HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf             999962897352466767799999999987788--577300336664354
Q gi|255764463|r  163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS  210 (337)
Q Consensus       163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~  210 (337)
                      +.++.+|+|   |..|--|-|.|++++|+.+|.  .|+-+.---==||+.
T Consensus       282 ~~~~~~g~~---P~~~~~gpv~A~~~~L~~agl~~~Did~~EinEAFA~~  328 (401)
T PRK08131        282 LSSAAAGVE---PRIMGIGPVEAIKKALARAGLTLDDMDIIEINEAFASQ  328 (401)
T ss_pred             EEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHH
T ss_conf             977788748---77848265999999999759981238777850266888


No 351
>PRK06462 asparagine synthetase A; Reviewed
Probab=26.00  E-value=43  Score=15.11  Aligned_cols=15  Identities=7%  Similarity=-0.097  Sum_probs=8.3

Q ss_pred             HHHHHHCCCCEEEEE
Q ss_conf             999998889367633
Q gi|255764463|r   74 IKQVADLGIPAIAIF   88 (337)
Q Consensus        74 ie~~~~lGI~av~LF   88 (337)
                      .+.++-.|...|-=+
T Consensus        89 lk~li~~g~~rVfeI  103 (332)
T PRK06462         89 KQLMLRLLKGKVFYL  103 (332)
T ss_pred             HHHHHHCCCCCEEEE
T ss_conf             999986389977997


No 352
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852   Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=25.99  E-value=42  Score=15.18  Aligned_cols=104  Identities=18%  Similarity=0.066  Sum_probs=70.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC--CCEEEEEC-CHHHH--HHHHHHHC
Q ss_conf             467777443157211478898888766408987995531145899999996249--98999934-61899--99999988
Q gi|255764463|r  224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG--LPTFAYQV-SGEYA--MIKAASLQ  298 (337)
Q Consensus       224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~--~P~~aYqV-SGEYa--mi~~a~~~  298 (337)
                      .|.-+|+.|+.|+--....+-|+.+-+.|||-|+-.|-----=||+..+|....  .-+..+|- .-|-.  .+...+..
T Consensus       105 ~~h~~k~~f~vPfvCGa~~lGea~rri~eGa~m~rtkGe~GtG~~~~av~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (298)
T TIGR00343       105 RFHIDKKKFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGDIVEAVRHMRLINEEIRELQKKLEEEEELGLAAEAKE  184 (298)
T ss_pred             HHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             44201012002214264467889998873136532268888655999999999999999999986445676678888766


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             8978899999999999772699998201899
Q gi|255764463|r  299 GWINKNDAMMESLLAFKRAGCDGIFTYFAME  329 (337)
Q Consensus       299 g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~  329 (337)
                      .  ..-.+..|.+..++..|-=-++.+.|--
T Consensus       185 ~--~~~~~~~~~~~~~~~~G~lPvvnfaaGG  213 (298)
T TIGR00343       185 N--EELEVPVELLKEVKKEGKLPVVNFAAGG  213 (298)
T ss_pred             H--HHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             6--7778999999999863897446413576


No 353
>smart00642 Aamy Alpha-amylase domain.
Probab=25.87  E-value=53  Score=14.48  Aligned_cols=76  Identities=24%  Similarity=0.301  Sum_probs=45.7

Q ss_pred             CCCCCCCC-------HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH------------HHHHHHHHHH
Q ss_conf             87863288-------9999999999998889367633025633455445421576537------------9999999997
Q gi|255764463|r   59 MPDVMRMS-------IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL------------INEGICAIKK  119 (337)
Q Consensus        59 MPGv~R~S-------id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl------------v~rAIr~IK~  119 (337)
                      +|--|.++       +..+.+.++.+.++||++|-|=|..+. ......-+-|++..+            ..+-|.++++
T Consensus         3 ~~drF~~~~~~~gGd~~gi~~kldyl~~lGv~~i~l~P~~~~-~~~~~~~hgY~~~d~~~vd~~~Gt~~d~~~lv~~~h~   81 (166)
T smart00642        3 YPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFES-PQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA   81 (166)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             773346489998408999998779999779998996876248-9988888881701012404046999999999999998


Q ss_pred             HHCCCEEEECCCCCHHHC
Q ss_conf             301447986133271001
Q gi|255764463|r  120 NIPNIGIITDVALDPFTI  137 (337)
Q Consensus       120 ~fpdl~vi~DVcLc~YT~  137 (337)
                      +  .|-||.|+-+-.-.+
T Consensus        82 ~--gi~vilD~V~NH~~~   97 (166)
T smart00642       82 R--GIKVILDVVINHTSD   97 (166)
T ss_pred             C--CCEEEEEECCCCCCC
T ss_conf             8--998999889986777


No 354
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.86  E-value=53  Score=14.48  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=61.7

Q ss_pred             HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCHH
Q ss_conf             43010167531024467777443157211478898888766408987995531145899999996249-98999934618
Q gi|255764463|r  210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG-LPTFAYQVSGE  288 (337)
Q Consensus       210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~-~P~~aYqVSGE  288 (337)
                      +++|-.++|+..+....+..+--...+.|..|+    ..-.+.|||++|.--  +..+-++++-+... .+-+---+||-
T Consensus       169 a~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~----~eAl~agaDiImLDN--m~~e~~~~av~~l~~~~~~~lEaSGg  242 (280)
T COG0157         169 AAAGSITEAVRRARAAAPFTKKIEVEVESLEEA----EEALEAGADIIMLDN--MSPEELKEAVKLLGLAGRALLEASGG  242 (280)
T ss_pred             HHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHH----HHHHHCCCCEEEECC--CCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             875359999999997589986289974999999----999974999999769--99999999999744477669997589


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf             9999999988897889999999999977269999820189999998
Q gi|255764463|r  289 YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL  334 (337)
Q Consensus       289 Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L  334 (337)
                                  ++     +|++..+.--|-|+|.+-+--.-+.||
T Consensus       243 ------------It-----~~ni~~yA~tGVD~IS~galths~~~l  271 (280)
T COG0157         243 ------------IT-----LENIREYAETGVDVISVGALTHSAPAL  271 (280)
T ss_pred             ------------CC-----HHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf             ------------78-----778999862699799807330477533


No 355
>pfam12114 Period_C Period protein 2/3C-terminal region. This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.
Probab=25.85  E-value=33  Score=15.83  Aligned_cols=17  Identities=24%  Similarity=0.536  Sum_probs=10.6

Q ss_pred             CCCCCCCCHHHHHHHHH
Q ss_conf             44315721147889888
Q gi|255764463|r  230 KTYYLDPANVQEAIREA  246 (337)
Q Consensus       230 ~sYQmd~~n~~eA~~e~  246 (337)
                      =||||+.++..+-|+|=
T Consensus       104 MtYQip~R~~e~VLkeD  120 (190)
T pfam12114       104 MTYQIPSRDLEEVLKED  120 (190)
T ss_pred             EEEECCCHHHHHHHHHH
T ss_conf             87206701489999999


No 356
>pfam01255 Prenyltransf Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.
Probab=25.84  E-value=52  Score=14.50  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             288999999999999888936763302563345544542157653799999999973014
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN  123 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd  123 (337)
                      +.+.+.+.+.++-|.++||+.+-+|..--++-|-+..+    -+.++.-..+.+++..++
T Consensus        21 ~~G~~~~~~i~~~c~~~gI~~lTvyaFStEN~~R~~~E----v~~L~~l~~~~l~~~~~~   76 (222)
T pfam01255        21 RAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEE----VDFLMELLEEKLRRLLED   76 (222)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEHHHCHHHCCCCHHH----HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999986999897264178754999899----999999999999999999


No 357
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=25.83  E-value=40  Score=15.30  Aligned_cols=125  Identities=22%  Similarity=0.239  Sum_probs=76.9

Q ss_pred             CCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-H----HCCCCEEECCC
Q ss_conf             576537999999999730-14479861332710011431001365446289999999999999-9----62897352466
Q gi|255764463|r  104 IDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQ-A----DAGADIIAPSE  177 (337)
Q Consensus       104 ~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~-A----~AGaDivAPSd  177 (337)
                      |..=+-+..+++.+++.= -+.+|+|         .||=|          |+...|.++|-.- -    +-|=-+|==+.
T Consensus       298 ygsP~~~~i~~~e~~~~P~~~~lii~---------TGsQG----------Ep~A~L~RiAn~~h~~~~i~~~DtVVfSa~  358 (593)
T TIGR00649       298 YGSPKNLFISLKEINKYPKENYLIIT---------TGSQG----------EPLAALTRIANGEHEQIRIRKGDTVVFSAP  358 (593)
T ss_pred             ECCHHHHHHHHHHHHHCCCCCEEEEE---------ECCCC----------CHHHHHHHCCCCCCCCEEECCCCEEEEECC
T ss_conf             13805567999999718886379998---------55989----------412555010078876310048734898568


Q ss_pred             CCCCHH-HHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             767799-9999999877885773003366643543010167531024467777443157211478898888766408987
Q gi|255764463|r  178 MMDGRV-QEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADM  256 (337)
Q Consensus       178 MMDGrV-~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~  256 (337)
                      ---|.. -+.|..+|..=.         -+=+-.+|++|+++-=|--+              ++|-.|            
T Consensus       359 ~IPG~~n~~~~~~~~~~L~---------~~ga~v~~~~~~~~HvSGHA--------------s~Ed~k------------  403 (593)
T TIGR00649       359 PIPGNENIAVSNTLDVRLA---------RAGARVIKGELDDIHVSGHA--------------SQEDHK------------  403 (593)
T ss_pred             CCCCHHHHHHHHHHHHHHH---------HHHHHHHHHCCCCEEEECCC--------------CCHHHH------------
T ss_conf             9987377999999999999---------87778741111871671326--------------734699------------


Q ss_pred             EEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             99553114589999999624998999934618999999998
Q gi|255764463|r  257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASL  297 (337)
Q Consensus       257 lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~  297 (337)
                                ++|+.+|=+|-+|     |.|||.|+++-++
T Consensus       404 ----------~llrllkPkyiiP-----~hGeyrm~~~h~~  429 (593)
T TIGR00649       404 ----------LLLRLLKPKYIIP-----VHGEYRMLAAHTK  429 (593)
T ss_pred             ----------HHHHHHCCCEEEC-----CCCCHHHHHHHHH
T ss_conf             ----------9998629855511-----7865678999999


No 358
>PRK13759 arylsulfatase; Provisional
Probab=25.66  E-value=36  Score=15.60  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             CCCCCCHHHHHHHHHHHCCC-CCCCEE
Q ss_conf             66767799999999987788-577300
Q gi|255764463|r  176 SEMMDGRVQEIRKKLDSHGH-INVGIM  201 (337)
Q Consensus       176 SdMMDGrV~aIR~~Ld~~g~-~~~~Im  201 (337)
                      -.+||-.||.|.++|++.|. .||.|+
T Consensus       262 i~~vD~~iG~ll~~L~e~gl~dNTiII  288 (474)
T PRK13759        262 ITFIDHQIGRILQTLKEKGMYDNTIIC  288 (474)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             999999999999999974998770799


No 359
>PTZ00292 ribokinase; Provisional
Probab=25.57  E-value=53  Score=14.44  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=17.3

Q ss_pred             HHHHHHHHHCCCCEEECCCCCCCHHH-HHHHHHHHCCC
Q ss_conf             99999999628973524667677999-99999987788
Q gi|255764463|r  159 SHAAVIQADAGADIIAPSEMMDGRVQ-EIRKKLDSHGH  195 (337)
Q Consensus       159 ~k~Al~~A~AGaDivAPSdMMDGrV~-aIR~~Ld~~g~  195 (337)
                      +.+|+..++-|+++--=+-.=|...+ .+++.|.++|-
T Consensus        55 ~NvA~~larLG~~~~~ig~VG~D~~G~~~~~~L~~~GV   92 (328)
T PTZ00292         55 ANQAVAAGRLGAKVAMVSMVGTDGDGSDYIKELERNGV   92 (328)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             99999999869985899996895789999999997299


No 360
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=25.50  E-value=51  Score=14.59  Aligned_cols=66  Identities=21%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             CCCCCHHHCCCCCCCCC------C---CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CC
Q ss_conf             13327100114310013------6---5446289999999999999962897352466767799999999987788--57
Q gi|255764463|r  129 DVALDPFTIHGHDGILC------D---GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--IN  197 (337)
Q Consensus       129 DVcLc~YT~hGHcGi~~------~---g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~  197 (337)
                      --||.|.-+--| |+-+      .   +-|.|+++-+...+-+.                  -|.+||+.||..||  ..
T Consensus       143 sKsL~pLPeK~h-gL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~------------------ii~~iR~fl~~~gFlEVE  203 (502)
T COG1190         143 SKSLRPLPEKFH-GLTDKEIRYRQRYLDLIVNPESRQTFIKRSK------------------IIRAIREFLDDRGFLEVE  203 (502)
T ss_pred             CCCCCCCCHHHC-CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH------------------HHHHHHHHHHHCCCEEEC
T ss_conf             020777974543-7863888999888898659999999999999------------------999999999877975841


Q ss_pred             CCEECHHHHHHHHHHCCH
Q ss_conf             730033666435430101
Q gi|255764463|r  198 VGIMPYVAKFNSSFYGPY  215 (337)
Q Consensus       198 ~~ImsYsaKfaS~fYgPF  215 (337)
                      ||+|..-+-=|++  -||
T Consensus       204 TP~lq~i~GGA~A--rPF  219 (502)
T COG1190         204 TPMLQPIPGGAAA--RPF  219 (502)
T ss_pred             CCCCCCCCCCCCC--CCC
T ss_conf             6000355787322--650


No 361
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=25.43  E-value=48  Score=14.77  Aligned_cols=36  Identities=14%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf             466767799999999987788--577300336664354
Q gi|255764463|r  175 PSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS  210 (337)
Q Consensus       175 PSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~  210 (337)
                      |.+|-.|-+.+++++|+.+|.  .|+-+.-.--=||+.
T Consensus       280 p~~m~~~p~~A~~~~L~ragl~~~did~~EinEAFA~~  317 (388)
T PRK06366        280 PLDFVEAPIPATRKLLEKQNKSIDYYDLVEHNEAFSIA  317 (388)
T ss_pred             HHHHCCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHHH
T ss_conf             36624372999999999859985551378860888999


No 362
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=25.31  E-value=54  Score=14.41  Aligned_cols=183  Identities=16%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCC
Q ss_conf             99999999998889367633025633455445421576537999999999730144798613327100114310013654
Q gi|255764463|r   69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGE  148 (337)
Q Consensus        69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~  148 (337)
                      .-++.++...+.|..-+.+- =++       |  |....+.-...|+.|.+.+.          .|        +--.|-
T Consensus        30 dP~~~A~~~~~~Ga~~lhvv-DLd-------~--A~~g~~~n~~~I~~i~~~~~----------~p--------i~vGGG   81 (241)
T PRK00748         30 DPLAQAQAWQDQGAEWLHLV-DLD-------G--AFAGRPVNLELIEAIVAAVD----------IP--------VQLGGG   81 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEE-ECC-------C--CCCCCCCHHHHHHHHHHHCC----------CC--------EEEECC
T ss_conf             99999999998799989999-785-------4--20288207999999998679----------99--------998277


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCC
Q ss_conf             46289999999999999962897352466767799999999987788577300336664354301016753102446777
Q gi|255764463|r  149 IVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGD  228 (337)
Q Consensus       149 IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gd  228 (337)
                      |-+-++++.+       -++|||-|.-+..-=--...+++....-| .. .++|--+|             +-.-...|=
T Consensus        82 Irs~e~~~~~-------l~~GadkVvigS~a~~n~~~i~~~~~~~g-~~-ivvsiD~k-------------~~~v~~~gw  139 (241)
T PRK00748         82 IRDLETVEAY-------LDAGVARVIIGTAAVKNPELVKEACKKFP-GR-IVVGLDAR-------------DGKVATRGW  139 (241)
T ss_pred             CCCHHHHHHH-------HHCCCCEEEECCHHHHCHHHHHHHHHHCC-CC-EEEEEEEC-------------CCEEECCCC
T ss_conf             0749999999-------97697758864710339689999986235-55-79999821-------------665401575


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC
Q ss_conf             74431572114788988887664089879955-------31145899999996249989999346189999999988897
Q gi|255764463|r  229 KKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWI  301 (337)
Q Consensus       229 r~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~  301 (337)
                      ++.=.++   ..|.+.   .-.+-|+--+++-       =..|-++++..+.+.+++|+.|   ||           |.-
T Consensus       140 ~~~t~~~---~~~~i~---~~~~~G~~eii~tdI~~DGt~~G~d~~l~~~i~~~~~ipvia---sG-----------Gv~  199 (241)
T PRK00748        140 QEVSGVD---LEDLAK---RFEDAGVAAIIYTDISRDGTLSGPNVELTRELAAATPIPVIA---SG-----------GVS  199 (241)
T ss_pred             CCCCCCC---HHHHHH---HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE---EC-----------CCC
T ss_conf             5467974---899999---998558756999887056854768999999999868998999---88-----------999


Q ss_pred             CHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             8899999999999772699998
Q gi|255764463|r  302 NKNDAMMESLLAFKRAGCDGIF  323 (337)
Q Consensus       302 d~~~~~~E~l~~~kRAGAd~Ii  323 (337)
                      +.++  ++.|..+..+|.+.+|
T Consensus       200 s~~D--i~~L~~~~~~gv~gvi  219 (241)
T PRK00748        200 SLDD--IRALKALGPEGVEGVI  219 (241)
T ss_pred             CHHH--HHHHHHCCCCCCCEEE
T ss_conf             9999--9999860317924899


No 363
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=25.30  E-value=54  Score=14.41  Aligned_cols=133  Identities=22%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCC
Q ss_conf             048887863288999999999999888936763302563345544542157653799999999973014-4798613327
Q gi|255764463|r   55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALD  133 (337)
Q Consensus        55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc  133 (337)
                      +|+-+...- .+...+...+..+..+||++|+..-+=++...+.... .-..+.--..-|+.||..+++ ..|  -|+.-
T Consensus        61 ~i~Hltcr~-~n~~~l~~~L~~~~~~Gi~niLaLrGD~p~~~~~~~~-~~~~~~~a~~Li~~i~~~~~~~~~i--gva~y  136 (274)
T cd00537          61 PIPHLTCRD-RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGA-KPVGFVYAVDLVELIRKENGGGFSI--GVAAY  136 (274)
T ss_pred             EEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCEE--CCCCC
T ss_conf             226860178-9999999999999985986388735888877888888-8877467999999999975898500--56668


Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHCCCC---CCCEECH
Q ss_conf             10011431001365446289999999999999962897352466767-7999999999877885---7730033
Q gi|255764463|r  134 PFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD-GRVQEIRKKLDSHGHI---NVGIMPY  203 (337)
Q Consensus       134 ~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD-GrV~aIR~~Ld~~g~~---~~~ImsY  203 (337)
                      |   -||-..     -+-+..++.|.+    -.+||||.+---=-.| ..+..-++.+.+.|..   -.+||.-
T Consensus       137 P---e~hp~~-----~~~~~di~~L~~----K~~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GImpi  198 (274)
T cd00537         137 P---EGHPEA-----PSLEEDIKRLKR----KVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPL  198 (274)
T ss_pred             C---CCCCCC-----CHHHHHHHHHHH----HHHHHHHHHHHHHEECHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf             7---768774-----168899999999----9981426678644333999999999999749998656321100


No 364
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.02  E-value=55  Score=14.38  Aligned_cols=23  Identities=13%  Similarity=0.313  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHCCCCCCCEECHHH
Q ss_conf             99999999877885773003366
Q gi|255764463|r  183 VQEIRKKLDSHGHINVGIMPYVA  205 (337)
Q Consensus       183 V~aIR~~Ld~~g~~~~~ImsYsa  205 (337)
                      -..+.+.|.++||....|-.|+-
T Consensus       218 ~~~~~~~L~~~Gy~~yeisnfak  240 (377)
T PRK08599        218 YEYLMSEMEKHGFHQYEISNFAK  240 (377)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHCC
T ss_conf             99999999975997412033137


No 365
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210   This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=24.82  E-value=55  Score=14.35  Aligned_cols=172  Identities=20%  Similarity=0.280  Sum_probs=98.9

Q ss_pred             HCCCCEEEECCCCCEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             7331166675898811-048887863288999999999999888936763302563345544542157653799999999
Q gi|255764463|r   39 DLILPIFLTSGEKTVE-SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAI  117 (337)
Q Consensus        39 dLI~PiFV~eg~~~k~-~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~I  117 (337)
                      -+|.|+  .-  ++.. ||++|=        .+-+.|++..+.|+.+|++-++|-+.---+.|                 
T Consensus        18 ~vivPm--DH--Git~Gpi~GLv--------di~~tv~~V~~gGadAVL~hkGi~~~~h~~~g-----------------   68 (259)
T TIGR01949        18 TVIVPM--DH--GITLGPIDGLV--------DIRKTVNEVAEGGADAVLLHKGIARRGHREKG-----------------   68 (259)
T ss_pred             EEEEEC--CC--CCCCCCCCCHH--------HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC-----------------
T ss_conf             799866--78--84567211111--------48789999760776678527871004565668-----------------


Q ss_pred             HHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC-----CCCCCCHHHHHHHHHHH
Q ss_conf             9730144798613327100114310013654462899999999999999628973524-----66767799999999987
Q gi|255764463|r  118 KKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP-----SEMMDGRVQEIRKKLDS  192 (337)
Q Consensus       118 K~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP-----SdMMDGrV~aIR~~Ld~  192 (337)
                          .|..+|.  =|-.=|+=+        ---||+++-.-++-|+   ++|||-|.=     ||-=--++...=..=..
T Consensus        69 ----~D~GlIv--HLsAST~L~--------P~p~~K~~~~tVE~Ai---~~GADAVS~HvNvGs~~e~d~~~~lg~vA~~  131 (259)
T TIGR01949        69 ----KDAGLIV--HLSASTSLS--------PDPNDKRIVTTVEDAI---RLGADAVSIHVNVGSDTEADQIEDLGDVAEI  131 (259)
T ss_pred             ----CCEEEEE--ECCCCCCCC--------CCCCCCEEEECHHHHH---HCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             ----3169998--604543258--------8887875785148997---3289867998864898738999999899998


Q ss_pred             CCCCCCCEE--CHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH-HHHHH
Q ss_conf             788577300--336664354301016753102446777744315721147889888876640898799553114-58999
Q gi|255764463|r  193 HGHINVGIM--PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP-YLDVC  269 (337)
Q Consensus       193 ~g~~~~~Im--sYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~-yLDii  269 (337)
                      +..-.+|+|  .|                   |  -|.+=.-|.||.+-..|.|=.   .+=|||+|=|  +.. .+|=-
T Consensus       132 ad~~GvPlLAMmY-------------------a--RG~~i~~e~d~~~v~HAaRlg---~ElGADvvK~--~Y~Gd~~SF  185 (259)
T TIGR01949       132 ADDWGVPLLAMMY-------------------A--RGPRIDDEVDPEVVAHAARLG---EELGADVVKV--PYTGDIDSF  185 (259)
T ss_pred             HHHCCCCHHECCC-------------------C--CCCCCCCCCCHHHHHHHHHHH---HHHCCCEEEE--CCCCCHHHH
T ss_conf             8654884201127-------------------8--868876644767888887653---5345776651--431774679


Q ss_pred             HHHHHHCCCCEEE
Q ss_conf             9999624998999
Q gi|255764463|r  270 FRIKEKFGLPTFA  282 (337)
Q Consensus       270 ~~~k~~~~~P~~a  282 (337)
                      +++=+.+..||..
T Consensus       186 ~~VV~~c~~PVvv  198 (259)
T TIGR01949       186 EEVVKACAVPVVV  198 (259)
T ss_pred             HHHHCCCCCCEEE
T ss_conf             9996217877787


No 366
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.    This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=24.69  E-value=55  Score=14.34  Aligned_cols=74  Identities=27%  Similarity=0.303  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEE-------C---CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHH
Q ss_conf             7211478898888766408987995-------5---31145899999996249989999346189999999988897889
Q gi|255764463|r  235 DPANVQEAIREASIDIQESADMLLV-------K---PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKN  304 (337)
Q Consensus       235 d~~n~~eA~~e~~~D~~EGAD~lMV-------K---Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~  304 (337)
                      -.++.....-=+..+.+||||=|-=       -   -=-+-+|||.++.++..+|+.   |-|           |.=+..
T Consensus        37 GlrdaGDPVeLA~~Y~~eGADELVFLDITAS~ecPl~R~~m~~Vv~r~Ae~VfiPlT---VGG-----------GI~~~e  102 (312)
T TIGR00735        37 GLRDAGDPVELAQRYDEEGADELVFLDITASSECPLGRETMIDVVERTAEKVFIPLT---VGG-----------GIKSIE  102 (312)
T ss_pred             CHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE---ECC-----------CCCCHH
T ss_conf             201217823789998762895898514113666788880116788887521452222---168-----------888432


Q ss_pred             HH------HHHHHHHHHHHCCCEE
Q ss_conf             99------9999999977269999
Q gi|255764463|r  305 DA------MMESLLAFKRAGCDGI  322 (337)
Q Consensus       305 ~~------~~E~l~~~kRAGAd~I  322 (337)
                      ++      .+|.--.+.|||||=|
T Consensus       103 D~~GtkiPalevas~~L~aGADKv  126 (312)
T TIGR00735       103 DVKGTKIPALEVASKLLRAGADKV  126 (312)
T ss_pred             HCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             045644427899999985489846


No 367
>PRK05269 transaldolase B; Provisional
Probab=24.69  E-value=55  Score=14.34  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=75.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC-CCC-CHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             4542157653799999999973014479861-332-71001143--1001365446289999999999999962897352
Q gi|255764463|r   99 TGSHIIDPDNLINEGICAIKKNIPNIGIITD-VAL-DPFTIHGH--DGILCDGEIVNDETIELISHAAVIQADAGADIIA  174 (337)
Q Consensus        99 ~GseA~n~dglv~rAIr~IK~~fpdl~vi~D-VcL-c~YT~hGH--cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA  174 (337)
                      .+.-+||-++.+.+|-+.++- |.+.+|=.| ||. -|-|-.|-  |-.+...-|.--.|+--=..||+.-|+|||-.|.
T Consensus        98 darls~d~~~~i~~a~~li~l-y~~~gi~~~rilIKip~TweGi~Aa~~Le~~gI~~nlTlvFs~~QA~a~a~Ag~~~IS  176 (320)
T PRK05269         98 DARLSFDTEATIAKARKLIKL-YEEAGIDKDRILIKIASTWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLIS  176 (320)
T ss_pred             CCHHCCCHHHHHHHHHHHHHH-HHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEC
T ss_conf             520226878999999999999-9974998232577448878899999999975962457776269999999975986987


Q ss_pred             CCCCCCCHHHHHHHHHHHC-------CCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC--CCHHHHHHHH
Q ss_conf             4667677999999999877-------885773003366643543010167531024467777443157--2114788988
Q gi|255764463|r  175 PSEMMDGRVQEIRKKLDSH-------GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLD--PANVQEAIRE  245 (337)
Q Consensus       175 PSdMMDGrV~aIR~~Ld~~-------g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd--~~n~~eA~~e  245 (337)
                      |=      ||-|..--.++       +-.|-++.|     .-.-|-=|+.       + | -+|-=|.  ++|..|-+.=
T Consensus       177 Pf------VGRi~DWyk~~~~~~~~~~~~DPGV~s-----V~~Iy~yyk~-------~-g-y~T~VMgASfRn~~eI~aL  236 (320)
T PRK05269        177 PF------VGRILDWYKKNTGGKDYAPAEDPGVVS-----VTKIYNYYKK-------H-G-YKTVVMGASFRNIGQILAL  236 (320)
T ss_pred             CC------CCHHHHHHHHCCCCCCCCCCCCCHHHH-----HHHHHHHHHH-------C-C-CCCEEEEEECCCHHHHHHH
T ss_conf             64------125778998556777787667954999-----9999999997-------5-9-9854864002789999997


Q ss_pred             HHHHHHCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf             887664089879955311458999999962
Q gi|255764463|r  246 ASIDIQESADMLLVKPGLPYLDVCFRIKEK  275 (337)
Q Consensus       246 ~~~D~~EGAD~lMVKPa~~yLDii~~~k~~  275 (337)
                            -|.|.|-+-|.  .|+   ++++.
T Consensus       237 ------AGcD~lTIsP~--LL~---eL~~~  255 (320)
T PRK05269        237 ------AGCDRLTISPA--LLE---ELAAS  255 (320)
T ss_pred             ------HCCCEEEECHH--HHH---HHHHC
T ss_conf             ------47982311899--999---98707


No 368
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=24.51  E-value=56  Score=14.31  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHCCCCCCCEEC
Q ss_conf             999999999877885773003
Q gi|255764463|r  182 RVQEIRKKLDSHGHINVGIMP  202 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~~~Ims  202 (337)
                      -...+|+.||.+||.++.|+.
T Consensus       264 Ls~~~R~~LD~~G~~~~kI~~  284 (443)
T PRK12484        264 LSKATRAILDTAGLEQVKIVA  284 (443)
T ss_pred             HHHHHHHHHHHCCCCCCEEEE
T ss_conf             999999999867998867999


No 369
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=24.42  E-value=56  Score=14.30  Aligned_cols=178  Identities=19%  Similarity=0.221  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCC---CCCCHHH--------HHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             379999999997301-447986133271001143100136---5446289--------9999999999999628973524
Q gi|255764463|r  108 NLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCD---GEIVNDE--------TIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       108 glv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~---g~IdND~--------Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      ..+..||+.+|++.+ +.-+|. .|-.|+|.-.+.-=.++   .-+.|.+        ..+.+.+-+..|.+||||+|.-
T Consensus       121 ~~v~eai~~lk~~l~~~vplig-f~ggP~Tla~yl~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~qi~aGad~i~i  199 (339)
T PRK06252        121 PVVLEAIKILKEKVGEDVPIIA-GMTGPASLASSLAGVKNFLKWLIKKPELAHEFIDFVTEACIEYAKAMLEAGADVIAI  199 (339)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEE-ECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999999999998189861796-467779999998746999999987999999999999999999999999829987897


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             66767799999999987788577300336664354301016753102446777744315721147889888876640898
Q gi|255764463|r  176 SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESAD  255 (337)
Q Consensus       176 SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD  255 (337)
                      .|.-=|.-     .|..+-|. --++.|..+..        +++++.+-       +. -.+|. ..+.+..  .+-|+|
T Consensus       200 fDs~a~~~-----lls~~~f~-ef~~p~~~~i~--------~~i~~~~i-------lh-~~g~~-~~~~~~~--~~~g~d  254 (339)
T PRK06252        200 ADPSASPE-----LIGPEMFE-EFVLPYLNKIC--------KEVNGPTI-------LH-ICGDL-TSILEEL--ADCGFD  254 (339)
T ss_pred             ECCCCCCC-----CCCHHHHH-HHHHHHHHHHH--------HHCCCCEE-------EE-ECCCC-HHHHHHH--HHCCCC
T ss_conf             15755556-----76999999-99899999999--------97799818-------88-65861-3789999--964999


Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             79955311458999999962499-8999934618999999998889788999999999997726999982
Q gi|255764463|r  256 MLLVKPGLPYLDVCFRIKEKFGL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       256 ~lMVKPa~~yLDii~~~k~~~~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      .+=+-....    +..+|+.++- -+..=+++-..-|+     .|  +.+.+.-|+..+++ .|.+ |+.
T Consensus       255 ~~s~D~~~~----l~~a~~~~g~~~~lqGNldP~~ll~-----~g--~~e~i~~~~~~~l~-~g~~-I~n  311 (339)
T PRK06252        255 GISIDEKVS----VKQAKENVGNRARLIGNVSTSFTLL-----NG--TPEDVKAEAKACLE-DGVD-ILA  311 (339)
T ss_pred             EEEECCCCC----HHHHHHHHCCCEEEEECCCCHHHHC-----CC--CHHHHHHHHHHHHH-CCCC-EEE
T ss_conf             997169999----9999998189917993689778766-----89--99999999999997-1899-168


No 370
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of  the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin.  Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.22  E-value=57  Score=14.28  Aligned_cols=203  Identities=16%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             CCEEEECCCCCEEECCCCCCCC-------CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             1166675898811048887863-------288999999999999888936763302563345544542157653799999
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVM-------RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGI  114 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~-------R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAI  114 (337)
                      +=+-++|...=+-+|++.|...       .||.+.+.+-++.+.+.||.-|-=| -+|-+.                   
T Consensus        35 lH~HltDdq~wrlei~~~P~Lt~~gs~g~~YT~~d~~eiv~yA~~rgI~ViPEi-D~PgHs-------------------   94 (311)
T cd06570          35 FHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI-DVPGHA-------------------   94 (311)
T ss_pred             EEEEEECCCCCEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCEEEEEE-CCCCHH-------------------
T ss_conf             888586488874123888660105789960389999999999998599896533-374147-------------------


Q ss_pred             HHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH--------CCCCEEECCCCCCCHHHH
Q ss_conf             999973014479861332710011431001365-44628999999999999996--------289735246676779999
Q gi|255764463|r  115 CAIKKNIPNIGIITDVALDPFTIHGHDGILCDG-EIVNDETIELISHAAVIQAD--------AGADIIAPSEMMDGRVQE  185 (337)
Q Consensus       115 r~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g-~IdND~Tl~~L~k~Al~~A~--------AGaDivAPSdMMDGrV~a  185 (337)
                      ++.-+.+|++..  .  .+++....++|+..+. .+.|++|.+.|.+.=--.++        -|.|=|....--  .-..
T Consensus        95 ~a~~~~yPel~~--~--~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lFp~~y~HiGGDEv~~~~W~--~~p~  168 (311)
T cd06570          95 SAIAVAYPELAS--G--PGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEVDPKQWN--ENPR  168 (311)
T ss_pred             HHHHHHCHHHCC--C--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCHH
T ss_conf             999986988547--8--887665667786672236898899999999999999857864156457546754243--7988


Q ss_pred             HHHHHHHCCCCCC-CEECHHHHHHHHHHCC-------HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9999987788577-3003366643543010-------1675310244677774431572114788988887664089879
Q gi|255764463|r  186 IRKKLDSHGHINV-GIMPYVAKFNSSFYGP-------YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADML  257 (337)
Q Consensus       186 IR~~Ld~~g~~~~-~ImsYsaKfaS~fYgP-------FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~l  257 (337)
                      |.+.+.++|+++. .+.+|-.+....+-..       +-|....  ..  ++. ..+..=...+.+.   .=.+.|-+.|
T Consensus       169 ~~~~m~~~~~~~~~~l~~~F~~~~~~~~~~~gk~~i~W~e~~~~--~~--~~~-~iv~~W~~~~~~~---~~~~~G~~vI  240 (311)
T cd06570         169 IQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP--DL--PKN-VVIQSWRGHDSLG---EAAKAGYQGI  240 (311)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECHHHCCC--CC--CCC-EEEEECCCCHHHH---HHHHCCCCEE
T ss_conf             99999983999899999999999999999809835842311157--99--997-1999559944899---9998799799


Q ss_pred             EECCCHHHHHHHHHHHHHC-CCCE
Q ss_conf             9553114589999999624-9989
Q gi|255764463|r  258 LVKPGLPYLDVCFRIKEKF-GLPT  280 (337)
Q Consensus       258 MVKPa~~yLDii~~~k~~~-~~P~  280 (337)
                      |= ++ .|||.-....... .-|+
T Consensus       241 ~s-~~-~YlD~~~~~~~~y~~dP~  262 (311)
T cd06570         241 LS-TG-YYIDQPQPAAYHYRVDPM  262 (311)
T ss_pred             EE-CC-EEECCCCCHHHCCCCCCE
T ss_conf             86-88-776688862011568984


No 371
>TIGR02082 metH methionine synthase; InterPro: IPR011822   Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin.   This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=24.12  E-value=54  Score=14.39  Aligned_cols=222  Identities=15%  Similarity=0.169  Sum_probs=125.3

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf             10488878632889999999999998889367633025633455445---421576537999999999730144798613
Q gi|255764463|r   54 ESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG---SHIIDPDNLINEGICAIKKNIPNIGIITDV  130 (337)
Q Consensus        54 ~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G---seA~n~dglv~rAIr~IK~~fpdl~vi~DV  130 (337)
                      .+|-.+.=+.=++-|+|...|+.+.+.-=--|...|.  .-+-+..|   ..-..|+ -++..++..=..+. +-|+   
T Consensus       227 ~~~~~iGLNCAlGpdel~~h~~~Ls~~~~~~Vs~~PN--AGLPn~~G~~AeY~l~P~-~~A~~l~~fa~eg~-lniV---  299 (1265)
T TIGR02082       227 AEILIIGLNCALGPDELRPHVKELSEHAEAYVSVHPN--AGLPNAFGKQAEYDLTPD-ELAKALKDFAEEGG-LNIV---  299 (1265)
T ss_pred             CCCCEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECC--CCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCC-EEEE---
T ss_conf             8730241231147778999999987008813888337--888100477768755578-99999999998639-0377---


Q ss_pred             CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHH
Q ss_conf             32710011431001365446289999999999999962897352466767799999999987788577300336664354
Q gi|255764463|r  131 ALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSS  210 (337)
Q Consensus       131 cLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~  210 (337)
                             =|=||---                              -     .|++|=++-..-.=...+--+.-.+-.+|
T Consensus       300 -------GGCCGTTP------------------------------~-----HIraiA~aVk~i~Pr~~~~ta~~~~~~~S  337 (1265)
T TIGR02082       300 -------GGCCGTTP------------------------------D-----HIRAIAEAVKDIKPRKRPETALYEPSRLS  337 (1265)
T ss_pred             -------ECCCCCCH------------------------------H-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             -------42689967------------------------------8-----99999999816876888765563246763


Q ss_pred             HHCCHHHHHHCC-------CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHH-------HHHHHHHH
Q ss_conf             301016753102-------44677774-4315721147889888876640898799553114589-------99999962
Q gi|255764463|r  211 FYGPYRDAISTR-------DLLKGDKK-TYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLD-------VCFRIKEK  275 (337)
Q Consensus       211 fYgPFRdA~~S~-------p~~~gdr~-sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLD-------ii~~~k~~  275 (337)
                      .|-||+=+-+|.       -+..|.|| .=-|.=.|..+||.=+..-+.+||-||=|===---||       ..+.+...
T Consensus       338 gle~~~~~~~~~FvniGERtNv~GS~KF~~li~aedY~~~L~iAk~QV~~GAQilDiN~D~~~lDg~~~M~~f~~llA~e  417 (1265)
T TIGR02082       338 GLEAITIAQESNFVNIGERTNVAGSKKFRKLIIAEDYDEALDIAKQQVENGAQILDINVDDGMLDGVAAMKRFLNLLASE  417 (1265)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf             03134636635668874300787686799985123846887898887116977989870655367378999999962689


Q ss_pred             --C-CCCEEEEECCHHHHHHHHHHH----CCCC------CH---HHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             --4-998999934618999999998----8897------88---99999999999772699998201
Q gi|255764463|r  276 --F-GLPTFAYQVSGEYAMIKAASL----QGWI------NK---NDAMMESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       276 --~-~~P~~aYqVSGEYami~~a~~----~g~~------d~---~~~~~E~l~~~kRAGAd~IitY~  326 (337)
                        . .+|+.-  =|-||+-|++.=+    ++.+      |-   ++-.+|.+.-+||=||-++|-=|
T Consensus       418 Pdia~vPlMl--DSs~~~vleaGLk~~qGKcivNSislkdGDGPE~~F~~~a~l~k~yGAavVvmaf  482 (1265)
T TIGR02082       418 PDIAKVPLML--DSSEWEVLEAGLKCIQGKCIVNSISLKDGDGPEERFLEKAKLIKEYGAAVVVMAF  482 (1265)
T ss_pred             CCCCCCCCCC--CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             8602136000--5743799976243038846873202566888489999999999844984898701


No 372
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.02  E-value=57  Score=14.25  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=13.5

Q ss_pred             HHHHHHHHHCCCCCCCEECHH
Q ss_conf             999999987788577300336
Q gi|255764463|r  184 QEIRKKLDSHGHINVGIMPYV  204 (337)
Q Consensus       184 ~aIR~~Ld~~g~~~~~ImsYs  204 (337)
                      ..+.+.|.++||....|=.|+
T Consensus       235 ~~~~~~L~~~GY~~yeisnFA  255 (393)
T PRK08898        235 DWIHARLAAAGYAHYETSAYA  255 (393)
T ss_pred             HHHHHHHHHCCCCEEEECHHH
T ss_conf             999999997699828725423


No 373
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=23.87  E-value=4.1  Score=22.00  Aligned_cols=136  Identities=19%  Similarity=0.262  Sum_probs=61.8

Q ss_pred             CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             86328899999----9999999888936763302563345544542157653-----79999999997301447986133
Q gi|255764463|r   61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN-----LINEGICAIKKNIPNIGIITDVA  131 (337)
Q Consensus        61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg-----lv~rAIr~IK~~fpdl~vi~DVc  131 (337)
                      |+.|--.|...    +...++++.|.-.=-+.|+.-+.+|..  ...++.|.     .....+.++|-.|..-+.+|   
T Consensus       175 ~IsReeqD~~A~~Sh~rA~~A~~~G~f~~EIvPV~v~~~kg~--~~~~~~De~~R~~tt~e~La~L~p~f~~~GtvT---  249 (401)
T PRK09050        175 NISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQRKGD--PVVVDRDEHPRPETTLEALAKLKPVVRPDGTVT---  249 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCCC--CEEECCCCCCCCCCCHHHHHCCCCCCCCCCCEE---
T ss_conf             999999999999999999998764983332022560367788--568755215575788878855898504798447---


Q ss_pred             CCHHHCCCCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEE
Q ss_conf             2710011431001365----44628999999999----9999962897352466767799999999987788--577300
Q gi|255764463|r  132 LDPFTIHGHDGILCDG----EIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIM  201 (337)
Q Consensus       132 Lc~YT~hGHcGi~~~g----~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~Im  201 (337)
                            .|.+--+.||    -+-+.+..+.|.-.    =+.++.+|+|   |..|--|-|.||+++|+.+|.  .|+-+.
T Consensus       250 ------AgNsS~~~DGAaa~ll~s~~~a~~~gl~p~a~i~~~~~~g~~---P~~~~~gp~~A~~~~L~~agl~~~DiD~~  320 (401)
T PRK09050        250 ------AGNASGVNDGAAALLLASEAAVKKHGLTPRARVLGMATAGVE---PRIMGIGPAPATRKLLARLGLTIDQFDVI  320 (401)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEE
T ss_conf             ------542574341778898853999997699704999987898848---77837489999999999859985448789


Q ss_pred             CHHHHHHHH
Q ss_conf             336664354
Q gi|255764463|r  202 PYVAKFNSS  210 (337)
Q Consensus       202 sYsaKfaS~  210 (337)
                      -.--=||+.
T Consensus       321 EinEAFA~q  329 (401)
T PRK09050        321 ELNEAFAAQ  329 (401)
T ss_pred             EECHHHHHH
T ss_conf             970243777


No 374
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=23.71  E-value=58  Score=14.21  Aligned_cols=80  Identities=14%  Similarity=0.179  Sum_probs=59.3

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             11666758988110488878632889999999999998889367633025633455445421576537999999999730
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI  121 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f  121 (337)
                      .++||+--.+-...-++|----=++.+.+..++.++.+.|=.-+-|..      ..++|+.+.+++ ..-+++..||+..
T Consensus         3 ~~viItcAvtGa~~T~~~~PalP~TP~qIA~~a~~aa~AGAai~HlHv------Rp~dG~pt~d~~-~yr~~l~rIr~~~   75 (298)
T COG3246           3 RKVIITCAVTGARHTPADHPALPVTPDQIASDAIAAAKAGAAILHLHV------RPEDGRPTLDPE-AYREVLERIRAAV   75 (298)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE------CCCCCCCCCCHH-HHHHHHHHHHCCC
T ss_conf             752899831688678566999999999999999999964841689874------589998666999-9999999997148


Q ss_pred             CCCEEEE
Q ss_conf             1447986
Q gi|255764463|r  122 PNIGIIT  128 (337)
Q Consensus       122 pdl~vi~  128 (337)
                      +|++|..
T Consensus        76 ~D~vin~   82 (298)
T COG3246          76 GDAVINL   82 (298)
T ss_pred             CCEEEEE
T ss_conf             9869995


No 375
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284   This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis .   Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=23.69  E-value=58  Score=14.21  Aligned_cols=52  Identities=19%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             328899999999999988893676330256334554454215765379999999997301447986
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIIT  128 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~  128 (337)
                      ||=+.+.+-+..+++.+.|.++..+=  .  +..|.+         =+.+.+.++.++|+ |=|..
T Consensus        29 y~~~e~~~~~~~~e~~~~G~~a~~~~--~--dvs~~~---------~~~~~~~~~~~~~G-iDiLV   80 (238)
T TIGR01830        29 YRTSEEGAEEVVEEIKELGVKAAGVV--L--DVSDRE---------DVKALVEEAEEELG-IDILV   80 (238)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEE--E--CCCCHH---------HHHHHHHHHHHHHC-CEEEE
T ss_conf             59825788899999985697599996--0--388889---------99999999999829-90899


No 376
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.68  E-value=58  Score=14.21  Aligned_cols=53  Identities=21%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1458999999962499899993461899999999888978-----899999999999772699998201
Q gi|255764463|r  263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN-----KNDAMMESLLAFKRAGCDGIFTYF  326 (337)
Q Consensus       263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d-----~~~~~~E~l~~~kRAGAd~IitY~  326 (337)
                      ---||-|..+---..-|+..= ++          ..||.-     .++.+.|.+-.+|++||.-|+.|-
T Consensus        38 ~~~L~~i~~ilPg~~~PTVs~-L~----------~~~w~AV~~vv~~~~~~~~i~~Lk~~GA~~Ilv~p   95 (100)
T TIGR03455        38 RDNLDEVRALLPGLEGPTVSP-LA----------DEGWVAVHAVVDEKVVNELIDKLKAAGARDILVLP   95 (100)
T ss_pred             HHHHHHHHHHCCCCCCCCCCC-CC----------CCCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             899999998687889991015-67----------89848999997579999999999987997799913


No 377
>PRK10499 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; Provisional
Probab=23.62  E-value=58  Score=14.20  Aligned_cols=60  Identities=20%  Similarity=0.349  Sum_probs=46.3

Q ss_pred             HHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             6640898799553114589999999624-99899993461899999999888978899999999999772699
Q gi|255764463|r  249 DIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       249 D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd  320 (337)
                      +..+++|++++-|-.-|+  ..++++.+ +.||.+-.-          ..-|..|-+.++-.++.-++-|+|+
T Consensus        46 ~~~~~~DviLLGPQVry~--~~~ik~~~~~~PV~vId~----------~~YG~mdG~~vL~~Al~li~ka~~~  106 (106)
T PRK10499         46 EKGQNADVVLLGPQIAYM--LPEIQRLLPNKPVEVIDS----------LLYGKVDGLGVLKAAVAAIKKAAAN  106 (106)
T ss_pred             HHCCCCCEEEECHHHHHH--HHHHHHHCCCCCEEEECH----------HHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             644599999998478887--999998828998899888----------9830664899999999999872369


No 378
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.51  E-value=58  Score=14.19  Aligned_cols=70  Identities=19%  Similarity=0.348  Sum_probs=44.3

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCC
Q ss_conf             8988110488878632889999999999998889367633025633455445421576537999999999730----144
Q gi|255764463|r   49 GEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI----PNI  124 (337)
Q Consensus        49 g~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f----pdl  124 (337)
                      |-+.+..|.||-...-.-++.-++++.++.+.|.--|=+=  +| +.++.             ++++.||+..    -++
T Consensus        26 Gg~~Pi~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvt--vp-~~~~A-------------~al~~I~~~l~~~~~~i   89 (606)
T PRK00694         26 GSEHSIKIQSMTTTATTDVDGTVRQICALQEHGCDIVRVT--VQ-GIKEA-------------QACEHIKERLIQQGISI   89 (606)
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHHHHCCCCC
T ss_conf             7999675564689986368999999999998599989987--79-99999-------------86999999986369999


Q ss_pred             EEEECCCCCH
Q ss_conf             7986133271
Q gi|255764463|r  125 GIITDVALDP  134 (337)
Q Consensus       125 ~vi~DVcLc~  134 (337)
                      =+++|+-+.+
T Consensus        90 PlvADIHF~~   99 (606)
T PRK00694         90 PLVADIHFFP   99 (606)
T ss_pred             CEEEECCCCH
T ss_conf             9886668888


No 379
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=23.34  E-value=59  Score=14.17  Aligned_cols=92  Identities=17%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCHH
Q ss_conf             301016753102446777744315721147889888876640898799553114589999999624--998999934618
Q gi|255764463|r  211 FYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF--GLPTFAYQVSGE  288 (337)
Q Consensus       211 fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~--~~P~~aYqVSGE  288 (337)
                      |+|-+++++..........+--+..+.|..|+...    ++.|+|++|.----|  +-++++....  .-|-..--+|| 
T Consensus        62 ~~g~~~~~i~~~~~~~~~~~~I~VEv~tl~e~~~a----~~~~~d~I~LDn~sp--e~l~~~v~~l~~~~~~v~iEaSG-  134 (169)
T pfam01729        62 AAGSITEAVRRAREVAPFAVKIEVEVENLEELEEA----LEAGADIIMLDNFSP--EEVREAVEELDERAGRVLLEVSG-  134 (169)
T ss_pred             HHCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHH----HHCCCCEEEECCCCH--HHHHHHHHHHHHHCCCEEEEECC-
T ss_conf             52799999999999679997099996019989999----846998999779999--99999999999758967999618-


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             9999999988897889999999999977269999820
Q gi|255764463|r  289 YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       289 Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                                 -+++     |.+..+...|.|+|-+=
T Consensus       135 -----------gI~~-----~ni~~yA~tGvD~IS~g  155 (169)
T pfam01729       135 -----------GITL-----DNVLEYAKTGVDVISVG  155 (169)
T ss_pred             -----------CCCH-----HHHHHHHHCCCCEEECC
T ss_conf             -----------9999-----99999997699999858


No 380
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase; InterPro: IPR012697    This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely miss-annotated examples of methylisocitrate lyase, an enzyme of propionate utilization..
Probab=23.15  E-value=31  Score=16.00  Aligned_cols=208  Identities=17%  Similarity=0.304  Sum_probs=114.4

Q ss_pred             CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             11666758988110488878632889999999999998889367633025633455445421576537999999999730
Q gi|255764463|r   42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI  121 (337)
Q Consensus        42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f  121 (337)
                      +|-.-..|.+..-..-++|..   +..++-++.-     .+++|.|---+| -.-|.+  ..|-.---|-||.|.    |
T Consensus        37 fPavhmtGsGtsasmlGlPdl---Gftsvseqa~-----n~knivl~vdvP-vimdad--aGyGnamsvWratre----f  101 (294)
T TIGR02319        37 FPAVHMTGSGTSASMLGLPDL---GFTSVSEQAI-----NLKNIVLAVDVP-VIMDAD--AGYGNAMSVWRATRE----F  101 (294)
T ss_pred             CCEEEEECCCCCHHHCCCCCC---CCHHHHHHHH-----HHCCEEEEECCC-EEEECC--CCCCCHHHHHHHHHH----H
T ss_conf             862675057620121046655---5102334544-----110045774144-577257--776521343333211----1


Q ss_pred             CCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf             14479861332710011431001365446289999999999999962897352466767799999999987788577300
Q gi|255764463|r  122 PNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIM  201 (337)
Q Consensus       122 pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Im  201 (337)
                      -.++|+.= -|..--.--.||-+...                       -.|.. .-|-|.|.+.-++-+.+.|+   |.
T Consensus       102 ervGivGy-hledqvnPkrCGhleGk-----------------------rlist-eemtGkieaavearededft---ii  153 (294)
T TIGR02319       102 ERVGIVGY-HLEDQVNPKRCGHLEGK-----------------------RLIST-EEMTGKIEAAVEAREDEDFT---II  153 (294)
T ss_pred             HEEEEEEE-EECCCCCCCCCCCCCCC-----------------------EEEEC-CCCCCHHHHHHHCCCCCCEE---EE
T ss_conf             00124653-20024685324534564-----------------------34310-10011222222102567507---88


Q ss_pred             CHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             33666435430101675310244677774431572114788988887664089879955311458999999962499899
Q gi|255764463|r  202 PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTF  281 (337)
Q Consensus       202 sYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~  281 (337)
                      +-+                      --|.++-     -+||+|.+...+.-|||-+... +|--..=.+++|+..+-|+.
T Consensus       154 art----------------------daresfG-----ldeairrsreyvaaGadCifle-amldveemkrvrdeidaPll  205 (294)
T TIGR02319       154 ART----------------------DARESFG-----LDEAIRRSREYVAAGADCIFLE-AMLDVEEMKRVRDEIDAPLL  205 (294)
T ss_pred             EEC----------------------CCCHHCC-----HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHCCHHH
T ss_conf             622----------------------3301115-----1577776556552152153466-77437877777765141356


Q ss_pred             EEECCHHH---------HHHH----HHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             99346189---------9999----999888978899999999999772699
Q gi|255764463|r  282 AYQVSGEY---------AMIK----AASLQGWINKNDAMMESLLAFKRAGCD  320 (337)
Q Consensus       282 aYqVSGEY---------ami~----~a~~~g~~d~~~~~~E~l~~~kRAGAd  320 (337)
                      |-.|.|--         -.|-    ---..||+---.++...++-++-||..
T Consensus       206 anmveGGktPWlttkelesiGynlaiyPlsGWmaaasvlrklftelreaGtt  257 (294)
T TIGR02319       206 ANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELREAGTT  257 (294)
T ss_pred             HHHHCCCCCCCCCHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7764067876421022433010100000135789999999998888631550


No 381
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=23.10  E-value=59  Score=14.14  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHCCCCC--CCEECH
Q ss_conf             9999999998778857--730033
Q gi|255764463|r  182 RVQEIRKKLDSHGHIN--VGIMPY  203 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~--~~ImsY  203 (337)
                      -|.+||+.|+++||.+  ||||.-
T Consensus       782 Vi~aiR~~L~~~GFlEVETPiLq~  805 (1099)
T PRK02983        782 VLRAVRETLVAKGFLEVETPILQQ  805 (1099)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             999999999878988955754677


No 382
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal  D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue.  A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.03  E-value=60  Score=14.13  Aligned_cols=18  Identities=17%  Similarity=0.384  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHCCCCEE
Q ss_conf             458999999962499899
Q gi|255764463|r  264 PYLDVCFRIKEKFGLPTF  281 (337)
Q Consensus       264 ~yLDii~~~k~~~~~P~~  281 (337)
                      .+-|||++.....++||.
T Consensus       244 ~~~~il~~~~~~~~iPv~  261 (282)
T cd07025         244 TLEEVLKEVLGDLGIPVL  261 (282)
T ss_pred             CHHHHHHHHHHHCCCCEE
T ss_conf             399999998751798189


No 383
>PRK05086 malate dehydrogenase; Provisional
Probab=22.99  E-value=60  Score=14.12  Aligned_cols=42  Identities=12%  Similarity=0.247  Sum_probs=17.2

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCC
Q ss_conf             893676330256334554454215765-3799999999973014
Q gi|255764463|r   81 GIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKNIPN  123 (337)
Q Consensus        81 GI~av~LFp~I~~~~Kd~~GseA~n~d-glv~rAIr~IK~~fpd  123 (337)
                      |-.-|++=.++|. +...+-.+-+..| .++....+.|++..|+
T Consensus        69 ~adiVvitAG~~r-kpG~tR~dLl~~Na~I~~~i~~~I~~~~p~  111 (312)
T PRK05086         69 GADVVLISAGVAR-KPGMDRSDLFNVNAGIVKNLVEKVAKTCPK  111 (312)
T ss_pred             CCCEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999998789899-858988999998789999999988720897


No 384
>PRK07328 histidinol-phosphatase; Provisional
Probab=22.87  E-value=60  Score=14.11  Aligned_cols=69  Identities=7%  Similarity=0.164  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf             28899999999999988893676330256-----3345544542157653799999999973014479861332
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIP-----MDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVAL  132 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~-----~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcL  132 (337)
                      .++.+.+.+.++++.++|+..+.+=-..|     +...++......+.-.-.-+.++.+|+++++|-|-+-+=.
T Consensus        13 ~~a~~~~ee~v~~Ai~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~i~I~~GiE~   86 (268)
T PRK07328         13 GHATGTPEEYVEEARAKGLAEIGFTDHLPMYWLPPEWYDPPWAMRLEELPAYVSEVLRVRERFPDLPVRLGLEA   86 (268)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             99888199999999987999899727999777874445854345688899999999999987259936755534


No 385
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=22.79  E-value=60  Score=14.10  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHH
Q ss_conf             99999997301447986133271001143100136544-6289999999999999962897-352466767799999999
Q gi|255764463|r  112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEI-VNDETIELISHAAVIQADAGAD-IIAPSEMMDGRVQEIRKK  189 (337)
Q Consensus       112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~I-dND~Tl~~L~k~Al~~A~AGaD-ivAPSdMMDGrV~aIR~~  189 (337)
                      .+.+.+++.-+++.++.=+-|   |+..|..+-..|.- .-.+.+..++++|   .++|+| +||+-    ..+..||+.
T Consensus        97 a~~~~~~~~~~~~kll~Vt~L---TS~~~~~l~~~~~~~~~~~~v~~~a~~a---~~~g~dGiVcs~----~e~~~ir~~  166 (231)
T PRK00230         97 AAREGLEPGGSRPLLIAVTVL---TSMDEEDLAELGINLSLEEQVLRLAKLA---QEAGLDGVVCSA----QEAAALREA  166 (231)
T ss_pred             HHHHHHHHCCCCCEEEEEEEE---CCCCHHHHHHCCCCCCHHHHHHHHHHHH---HHHCCCEEECCH----HHHHHHHHH
T ss_conf             999988714898759999962---3689889986675789999999999999---996998486388----899999864


Q ss_pred             HHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf             98778857730033666435430101675310244677774431572114788988887664089879955311
Q gi|255764463|r  190 LDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL  263 (337)
Q Consensus       190 Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~  263 (337)
                      +..+ |   .|++=-..                  +.|+.+-=|-.+....+|++       -|||++.|=-+.
T Consensus       167 ~~~~-~---~ivTPGIr------------------~~~~~~~DQ~rv~TP~~Ai~-------~GAD~iVVGR~I  211 (231)
T PRK00230        167 TGPD-F---LLVTPGIR------------------PAGSDAGDQKRVMTPAQAIA-------AGSDYIVVGRPI  211 (231)
T ss_pred             CCCC-C---EEECCCCC------------------CCCCCCCCCCCCCCHHHHHH-------CCCCEEEECCCC
T ss_conf             5987-1---89867727------------------78887567465689999998-------799999989845


No 386
>pfam00332 Glyco_hydro_17 Glycosyl hydrolases family 17.
Probab=22.57  E-value=53  Score=14.47  Aligned_cols=31  Identities=13%  Similarity=0.276  Sum_probs=26.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCEECH
Q ss_conf             5246676779999999998778857730033
Q gi|255764463|r  173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPY  203 (337)
Q Consensus       173 vAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsY  203 (337)
                      +.=.-|.|-+|-++..+|++.||.++.|+==
T Consensus       203 ~~Y~NlFDA~vDAv~~Am~k~G~~~v~ivVs  233 (310)
T pfam00332       203 LGYQNLFDAMLDAVYAALEKAGGPSVEVVVS  233 (310)
T ss_pred             CEECCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             6022288889999999999759997179993


No 387
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.55  E-value=61  Score=14.06  Aligned_cols=42  Identities=33%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCC--EEEEE-CCHH
Q ss_conf             876640898799553114589999999624998--99993-4618
Q gi|255764463|r  247 SIDIQESADMLLVKPGLPYLDVCFRIKEKFGLP--TFAYQ-VSGE  288 (337)
Q Consensus       247 ~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P--~~aYq-VSGE  288 (337)
                      ....-+.-|.+||-|-.|=--|=+.-++-+.+|  +|+|| .||+
T Consensus       117 ~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~  161 (338)
T COG0059         117 LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGK  161 (338)
T ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf             033776671899838999678999987369951699998668850


No 388
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=22.31  E-value=61  Score=14.03  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf             8999999999999996289735246676779999999998
Q gi|255764463|r  152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLD  191 (337)
Q Consensus       152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld  191 (337)
                      .++.+.|.+.-..-.+.|--++-|+= ==||-+.+=-.|+
T Consensus       385 ~e~e~~l~~~I~et~~rGGkVLIPaF-AvGRaQEll~iL~  423 (630)
T TIGR03675       385 EEAEKELIKVVNETIKRGGKVLIPVF-AVGRAQEVMLVLE  423 (630)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEE-CCCHHHHHHHHHH
T ss_conf             99999999999999963982999863-3653899999999


No 389
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.18  E-value=62  Score=14.02  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHCCCCCCCEECHHHH-----HHHHHHCCHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999999998778857730033666-----435430101675310---24467777443157211478898888766408
Q gi|255764463|r  182 RVQEIRKKLDSHGHINVGIMPYVAK-----FNSSFYGPYRDAIST---RDLLKGDKKTYYLDPANVQEAIREASIDIQES  253 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~~~ImsYsaK-----faS~fYgPFRdA~~S---~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG  253 (337)
                      .-..+++.|.++||....|=+|+-.     +... |---++-+|-   +-++.++.  +-.+.+|..+=++.+    ++|
T Consensus       220 ~~~~~~~~L~~~Gy~~yeisnfak~~~~~~hn~~-yw~~~~~lG~G~gA~s~~~~~--~~~N~~~~~~Y~~~i----~~~  292 (374)
T PRK06294        220 MSLAAEELLTSQGFERYELASYAKPQAYSKHNTY-YWTDRPFLGLGVSASQYLHGI--RSKNLSRISHYLRAV----RKN  292 (374)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC-CCCCCCEEEEECCEEEECCCE--EEEECCCHHHHHHHH----HCC
T ss_conf             9999999999759830115666359960304123-457997599936921007981--698159999999999----879


Q ss_pred             CCEEEECCCHHHHHHHH-----HHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCH
Q ss_conf             98799553114589999-----999624998999934618999999998889788
Q gi|255764463|r  254 ADMLLVKPGLPYLDVCF-----RIKEKFGLPTFAYQVSGEYAMIKAASLQGWINK  303 (337)
Q Consensus       254 AD~lMVKPa~~yLDii~-----~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~  303 (337)
                      ..-+.-...+.--|.++     .++-...+++..|+-.=.-..+....+.||+..
T Consensus       293 ~~~~~~~~~l~~~~~~~e~l~~~Lrl~~gv~~~~f~~~~~~~~l~~~~~~Gll~~  347 (374)
T PRK06294        293 LPTQESMEELPPNERIKEALALRLRLCQGIPIADFPQELILELTMQPSIQGLFTQ  347 (374)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9941044456985899999998298528987899669889999999998898898


No 390
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=22.16  E-value=62  Score=14.01  Aligned_cols=52  Identities=13%  Similarity=0.134  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf             899999999999988-89367633025633455445421576537999999999730144798613
Q gi|255764463|r   66 SIDVAVEKIKQVADL-GIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDV  130 (337)
Q Consensus        66 Sid~L~~eie~~~~l-GI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DV  130 (337)
                      +.+.++++.+.+.+. |.+++-+-.+..+...             -...++++++.+||.-++.|.
T Consensus       168 ~~e~~~~~a~~~~~~~Gf~~~K~k~g~~~~~~-------------di~~v~avrea~~d~~l~vDa  220 (395)
T cd03323         168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEE-------------EIEAVKALAEAFPGARLRLDP  220 (395)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-------------HHHHHHHHHHHCCCCEEEEEC
T ss_conf             99999999999998559865987469899799-------------999999999867998399878


No 391
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.03  E-value=62  Score=14.00  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Q ss_conf             554454215765379999999997301-447986
Q gi|255764463|r   96 RNNTGSHIIDPDNLINEGICAIKKNIP-NIGIIT  128 (337)
Q Consensus        96 Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~  128 (337)
                      .|+.|-.--|---|+...+++||+..+ |..|..
T Consensus       183 tDeYGGSlENR~Rf~~Eii~aVr~~vg~df~vg~  216 (361)
T cd04747         183 ADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIIL  216 (361)
T ss_pred             CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8878998798473699999999997299875999


No 392
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=22.01  E-value=62  Score=13.99  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=47.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             78885856312898899986347788877331166675898811048887863288999999999999888936763
Q gi|255764463|r   11 ICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAI   87 (337)
Q Consensus        11 ~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~L   87 (337)
                      +.=.+|==|+.-|+++-.-+++..    .-|.||||.|...-..+ ..=+...+|=.++|.+--+.+.++|++-+++
T Consensus         5 ivWFRrDLRl~DN~aL~~A~~~~~----~~vlpvyi~dp~~~~~~-~~~~~~~~Fl~esL~~L~~~L~~~g~~L~i~   76 (472)
T PRK10674          5 LVWFRNDLRLHDNLALAAACRDPS----ARVLALYIATPAQWAAH-NMAPRQAAFINAQLNALQIALAEKGIPLLFH   76 (472)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCC----CCEEEEEEECHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             999699975617899999997799----96999999856664068-9799999999999999999999779977999


No 393
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=21.86  E-value=63  Score=13.97  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHC---CCEEEECCCCCHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             79999999997301---44798613327100114310013--654462899999999999999628973524
Q gi|255764463|r  109 LINEGICAIKKNIP---NIGIITDVALDPFTIHGHDGILC--DGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       109 lv~rAIr~IK~~fp---dl~vi~DVcLc~YT~hGHcGi~~--~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      =++|+++.|++.-.   +|+|.-.+++.+|.......-+.  -..+.+.++++.|++.|-.   .|.-+|.+
T Consensus        28 nl~k~~~li~eAa~~Ga~LivfPE~~~tgy~~~~~~~~~~~~a~~~~~gp~~~~l~~~Ar~---~~i~iv~g   96 (287)
T cd07568          28 MIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKE---YNMVLILP   96 (287)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf             9999999999999885919987888656877654444788861705898899999999998---59289963


No 394
>pfam05315 ICEA ICEA Protein. This family consists of several ICEA proteins from Helicobacter pylori. Helicobacter pylori infection causes gastritis and peptic ulcer disease, and is classified as a definite carcinogen of gastric cancer. ICEA1 is speculated to be associated with peptic ulcer disease.
Probab=21.84  E-value=63  Score=13.97  Aligned_cols=120  Identities=18%  Similarity=0.165  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHH-HHHHHHC-CCEEEECCCCCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             21576537999999-9997301-447986133271001----14310013654462899999999999999628973524
Q gi|255764463|r  102 HIIDPDNLINEGIC-AIKKNIP-NIGIITDVALDPFTI----HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       102 eA~n~dglv~rAIr-~IK~~fp-dl~vi~DVcLc~YT~----hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      ..||+.....|.|| .||+.+. .-.+||-||=-+=++    +-.+|...|-.|.|-+|-.+--=|+|+-|---      
T Consensus        75 ~GfN~~~~fnq~IR~DIk~~l~~q~Cv~cG~~G~sent~ievDHKng~~nD~Rv~~~~tQ~~~DFQ~Lck~cN~------  148 (230)
T pfam05315        75 NGFNQECHFKQSIHKDIKDALKQQCCAMCGVNGKSENTKIEIDHKDGRKDDHRVSDIKTQKFDDFQALCKAAND------  148 (230)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------
T ss_conf             25575433372477999999973985686435786663478734677656601057442408887999987608------


Q ss_pred             CCCCCCHHHHHHHHHHHCC--CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             6676779999999998778--85773003366643543010167531024467777443157211478
Q gi|255764463|r  176 SEMMDGRVQEIRKKLDSHG--HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQE  241 (337)
Q Consensus       176 SdMMDGrV~aIR~~Ld~~g--~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~e  241 (337)
                            .-..|=+.-.+.|  |.-+.|..-    .-+||--=-+-  ..  ..|=--.||-||...+.
T Consensus       149 ------~KRQ~cKkckEt~~Rfda~ki~g~----~~~f~~g~~~y--~~--~~gcvgcy~yd~~~y~k  202 (230)
T pfam05315       149 ------KKRQICKKCKESGKRFDAKKIPGN----PYAFYEGDEEY--DE--ELGCVGCYQYDPIEYRK  202 (230)
T ss_pred             ------HHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCCCCCC--CC--CCCEEEEEECCHHHHHH
T ss_conf             ------889999988762750344206898----44511562002--77--78715643217999987


No 395
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=21.80  E-value=52  Score=14.50  Aligned_cols=16  Identities=38%  Similarity=0.814  Sum_probs=5.8

Q ss_pred             CCCCCCCCHHHHHHHH
Q ss_conf             4431572114788988
Q gi|255764463|r  230 KTYYLDPANVQEAIRE  245 (337)
Q Consensus       230 ~sYQmd~~n~~eA~~e  245 (337)
                      .++--++.|..|++.+
T Consensus       216 ~~~~st~~~iee~v~~  231 (371)
T COG0686         216 HTLYSTPSNIEEAVKK  231 (371)
T ss_pred             EEEECCHHHHHHHHHH
T ss_conf             9997589999987431


No 396
>PRK12928 lipoyl synthase; Provisional
Probab=21.80  E-value=63  Score=13.96  Aligned_cols=173  Identities=20%  Similarity=0.258  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC---
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431---
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD---  141 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc---  141 (337)
                      ...++-.+.++....+|++-+.+=-+--++++|--       -+..-++|++||+..|++.|=.   |.|=-...+.   
T Consensus        87 lD~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgG-------A~hfa~~I~~Ir~~~P~~~iEv---LiPDF~G~~~~al  156 (290)
T PRK12928         87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGG-------AAHFVATIAAIRARNPGTGIEV---LTPDFWGGVARAL  156 (290)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-------HHHHHHHHHHHHHHCCCCEEEE---ECHHHCCCHHHHH
T ss_conf             98034799999999838976898412367886645-------2999999999984599867997---0711136878999


Q ss_pred             -CCCCC-CCC--CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC-CCCEECHHHHHHHHHHCCHH
Q ss_conf             -00136-544--62899999999999999628973524667677999999999877885-77300336664354301016
Q gi|255764463|r  142 -GILCD-GEI--VNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI-NVGIMPYVAKFNSSFYGPYR  216 (337)
Q Consensus       142 -Gi~~~-g~I--dND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~-~~~ImsYsaKfaS~fYgPFR  216 (337)
                       -++.- -+|  -|=+|++.|-+..    +.|                       ++|. ...+|.|+.++++.      
T Consensus       157 ~~v~~a~pdV~nHNiETV~rL~~~V----Rp~-----------------------A~Y~rSL~vL~~ak~~~~~------  203 (290)
T PRK12928        157 ATVLAAKPDCFNHNLETVPRLQKAV----RRG-----------------------ADYQRSLDLLARAKELAPG------  203 (290)
T ss_pred             HHHHHCCCHHHHCCCCCCHHHCCCC----CCC-----------------------CHHHHHHHHHHHHHHHCCC------
T ss_conf             9998468546545501204317124----885-----------------------5089999999999973888------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf             753102446777744315721147889888876640-8987995531145899999996249989999346189999999
Q gi|255764463|r  217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA  295 (337)
Q Consensus       217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a  295 (337)
                              + --|++--+-..-..|-+.++..|..+ |.|||-+-   -||-     -....+||.-|---.||..++.-
T Consensus       204 --------i-~TKSgiMvGLGEt~eEv~~~~~DLr~~gvdilTiG---QYL~-----Ps~~h~pV~ryv~P~eF~~~~~~  266 (290)
T PRK12928        204 --------I-PTKSGLMLGLGETEDEVIETLRDLRAVDCDRLTIG---QYLR-----PSLAHLPVQRYWTPEEFEALGQI  266 (290)
T ss_pred             --------C-EEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCC-----CCCCCCCCEECCCHHHHHHHHHH
T ss_conf             --------5-24134588605889999999999998199899824---0258-----88666883335698999999999


Q ss_pred             HH
Q ss_conf             98
Q gi|255764463|r  296 SL  297 (337)
Q Consensus       296 ~~  297 (337)
                      +.
T Consensus       267 a~  268 (290)
T PRK12928        267 AR  268 (290)
T ss_pred             HH
T ss_conf             99


No 397
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.59  E-value=63  Score=13.94  Aligned_cols=52  Identities=10%  Similarity=0.188  Sum_probs=26.9

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCEE
Q ss_conf             99999999888936763302563345544542157---653799999999973014479
Q gi|255764463|r   71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID---PDNLINEGICAIKKNIPNIGI  126 (337)
Q Consensus        71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n---~dglv~rAIr~IK~~fpdl~v  126 (337)
                      .+.++.+.++||+-+-| |+  ++. |+.--.+.+   .-.-+.+|+..+|+.|+++.+
T Consensus       105 ~~~l~~l~~~GvnRiSl-GV--Qsf-~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~  159 (381)
T PRK09057        105 AGRFRGYRAAGVNRVSL-GV--QAL-NDADLRFLGRLHSVAEALAAIDLAREIFPRVSF  159 (381)
T ss_pred             HHHHHHHHHHCCCEEEE-EC--CCC-CHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             67999999709876989-62--349-999999738999899999999999986545120


No 398
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.51  E-value=64  Score=13.93  Aligned_cols=41  Identities=17%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             166675898811048887863288999999999999888936763302
Q gi|255764463|r   43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPN   90 (337)
Q Consensus        43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~   90 (337)
                      |.||.=+...       |....-|++.+.++++.+..+|++.+.+.|+
T Consensus        69 pYlINl~s~~-------~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG  109 (280)
T COG0648          69 PYLINLASPE-------KEKVEKSIERLIDEIDRCEQLGAKLLVFHPG  109 (280)
T ss_pred             CEEECCCCCC-------HHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             6045379997-------7899999999999999999749968997775


No 399
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=21.43  E-value=64  Score=13.92  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             6537999999999730144798613327100114310013654462899999999999999628973524
Q gi|255764463|r  106 PDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       106 ~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      +++.++|-++++|+.-++ .|+-=..=|||++++-|          |.++       ..|.+.|+|.+.-
T Consensus        76 ~~dVL~Rf~~a~~a~~~~-~VVRvTGD~P~~dp~l~----------d~~v-------~~~l~~gaDY~s~  127 (241)
T COG1861          76 EEDVLQRFIIAIKAYSAD-VVVRVTGDNPFLDPELV----------DAAV-------DRHLEKGADYVSN  127 (241)
T ss_pred             HHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHH----------HHHH-------HHHHHCCCCCCCC
T ss_conf             899999999999735887-69996089987788999----------9999-------9998659860136


No 400
>PRK05481 lipoyl synthase; Provisional
Probab=21.36  E-value=64  Score=13.91  Aligned_cols=196  Identities=20%  Similarity=0.254  Sum_probs=108.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC---
Q ss_conf             88999999999999888936763302563345544542157653799999999973014479861332710011431---
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD---  141 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc---  141 (337)
                      .-.++-.+.++....+|++-+.|=-+.-++++|--       -+..-++|++||+..|++.|=.   |.|== .|+-   
T Consensus        79 ~D~~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgG-------A~hfa~~I~~Ir~~~P~~~iEv---LiPDF-~G~~~~~  147 (289)
T PRK05481         79 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGG-------AQHFAETIRAIRELSPGTTIEV---LIPDF-RGRKDAA  147 (289)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-------HHHHHHHHHHHHHHCCCCEEEE---CCCCC-CCCHHHH
T ss_conf             87030799999999828976999634166665655-------4999999999985599977997---07211-4699999


Q ss_pred             --CCCCCC-CC--CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf             --001365-44--6289999999999999962897352466767799999999987788577300336664354301016
Q gi|255764463|r  142 --GILCDG-EI--VNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR  216 (337)
Q Consensus       142 --Gi~~~g-~I--dND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR  216 (337)
                        -++.-+ +|  -|=+|++.|-+.           |-|-.--+-.               ..+|.|+.++         
T Consensus       148 l~~v~~a~PdV~nHNiETV~rL~~~-----------VRp~a~Y~rS---------------L~vL~~~k~~---------  192 (289)
T PRK05481        148 LEIVVAAPPDVFNHNLETVPRLYKR-----------VRPGADYERS---------------LELLKRAKEL---------  192 (289)
T ss_pred             HHHHHHCCHHHHHCCHHHHHHHCCC-----------CCCCCHHHHH---------------HHHHHHHHHH---------
T ss_conf             9999856717764351310443623-----------3882338999---------------9999999974---------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf             753102446777744315721147889888876640-8987995531145899999996249989999346189999999
Q gi|255764463|r  217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA  295 (337)
Q Consensus       217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a  295 (337)
                           .|.+ --|+.--+-..-.+|-+.++..|..+ |.|||-+-   -||-     -....+||.-|---.||..++..
T Consensus       193 -----~p~~-~TKSgiMvGLGEt~eEv~~~~~DL~~~gvdilTiG---QYL~-----Ps~~hlpV~ryv~P~eF~~~~~~  258 (289)
T PRK05481        193 -----DPGI-PTKSGLMVGLGETDEEVLEVMDDLRAHGVDILTIG---QYLQ-----PSRKHLPVERYVTPEEFDEYKEI  258 (289)
T ss_pred             -----CCCC-CEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCC-----CCCCCCCCEECCCHHHHHHHHHH
T ss_conf             -----8998-24135677557889999999999998199899834---0358-----88666884335698999999999


Q ss_pred             HH-CCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf             98-88978899999999999772699998201899999
Q gi|255764463|r  296 SL-QGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAAR  332 (337)
Q Consensus       296 ~~-~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~  332 (337)
                      +. .|+.   .+         -+|-=.==||.|.+..+
T Consensus       259 a~~~GF~---~V---------~SgPlVRSSY~A~~~~~  284 (289)
T PRK05481        259 ALELGFL---HV---------ASGPLVRSSYHADEQFK  284 (289)
T ss_pred             HHHCCCC---EE---------EECCCCCCCHHHHHHHH
T ss_conf             9975996---79---------82374002042689986


No 401
>pfam06866 DUF1256 Protein of unknown function (DUF1256). This family consists of several uncharacterized bacterial proteins which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown. These proteins are related to peptidase family M63 and so may be peptidases.
Probab=21.33  E-value=64  Score=13.90  Aligned_cols=77  Identities=22%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             166675898811048887863288999999999999-8889367633025633455445421576537999999999730
Q gi|255764463|r   43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI  121 (337)
Q Consensus        43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f  121 (337)
                      .+||+=|.+.            ..=|.|---+...+ +.+.+.+-+||-    ++++-  +|.|    +.+.+..|++++
T Consensus        28 ~VilCIGTDR------------stGDsLGPLVGt~L~~~~~~~~~VyGT----L~~PV--HA~N----L~e~l~~I~~~~   85 (164)
T pfam06866        28 IVILCIGTDR------------STGDSLGPLVGTLLKEKNIPNLNVYGT----LEEPV--HAVN----LKEKLKEIKKKH   85 (164)
T ss_pred             EEEEEECCCC------------CCCCCCCCHHHHHHHHCCCCCCEEEEC----CCCCC--CHHC----HHHHHHHHHHHC
T ss_conf             6999989988------------642015505589987548999658768----99982--2205----999999999868


Q ss_pred             CC-CEEEECCCCCHHHCCCCC
Q ss_conf             14-479861332710011431
Q gi|255764463|r  122 PN-IGIITDVALDPFTIHGHD  141 (337)
Q Consensus       122 pd-l~vi~DVcLc~YT~hGHc  141 (337)
                      |+ .+|..|-||-.-.+-|.=
T Consensus        86 ~~p~IIAIDAcLG~~~~vG~I  106 (164)
T pfam06866        86 KNPFIIAIDACLGASNNIGHI  106 (164)
T ss_pred             CCCEEEEEECCCCCCCCCCEE
T ss_conf             998089998867985656289


No 402
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700   The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=21.29  E-value=64  Score=13.90  Aligned_cols=61  Identities=15%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             HHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             9999997301-44798613327100114310013654462899999999999999628973524
Q gi|255764463|r  113 GICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP  175 (337)
Q Consensus       113 AIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP  175 (337)
                      .++.+|.--- -+-|+.-+-|-|=.-|=--|.=-.|  -||++-+-|-++|+++++||+-.+--
T Consensus       122 ~~e~v~~LT~~GvpV~GH~GLtPQsV~~~GGYk~qG--k~~~~~~kLL~dAl~LeeAGv~lLVL  183 (267)
T TIGR00222       122 LVETVKALTEEGVPVVGHLGLTPQSVRLLGGYKVQG--KDEEAAKKLLEDALALEEAGVQLLVL  183 (267)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCEEEECCCEEECC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             889999986278458741478873340057400027--88788888999999999876674353


No 403
>pfam00863 Peptidase_C4 Peptidase family C4. This peptidase is present in the nuclear inclusion protein of potyviruses.
Probab=21.23  E-value=33  Score=15.89  Aligned_cols=18  Identities=11%  Similarity=0.076  Sum_probs=10.1

Q ss_pred             CCCCEEECCCCCCCCCCC
Q ss_conf             898811048887863288
Q gi|255764463|r   49 GEKTVESINSMPDVMRMS   66 (337)
Q Consensus        49 g~~~k~~I~SMPGv~R~S   66 (337)
                      ..|..-.|.|.-|.|...
T Consensus        50 rnnG~L~i~s~hG~f~v~   67 (233)
T pfam00863        50 RNNGTLTIRSQHGEFTVK   67 (233)
T ss_pred             CCCCEEEEEECCCEEECC
T ss_conf             489729999613269848


No 404
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.20  E-value=65  Score=13.88  Aligned_cols=41  Identities=24%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             89999999624-9989999346189999999988897889999999999977269999820
Q gi|255764463|r  266 LDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY  325 (337)
Q Consensus       266 LDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY  325 (337)
                      .++|+.+|+.. +.|++.               -|-++-.    |....+.+||||.|++=
T Consensus       163 ~e~V~~vk~~l~~~~Liv---------------GGGIrs~----e~a~~~~~AgAD~IVvG  204 (219)
T cd02812         163 PEVVRAVKKVLGDTPLIV---------------GGGIRSG----EQAKEMAEAGADTIVVG  204 (219)
T ss_pred             HHHHHHHHHHCCCCEEEE---------------ECCCCCH----HHHHHHHHCCCCEEEEC
T ss_conf             999999998467970999---------------2897999----99999998699999988


No 405
>pfam00762 Ferrochelatase Ferrochelatase.
Probab=21.08  E-value=65  Score=13.87  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             328899999999999988893676330256334554454
Q gi|255764463|r   63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS  101 (337)
Q Consensus        63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs  101 (337)
                      +||+--.+.+.++++.+.|+..+++||--|.......||
T Consensus        93 mry~~P~i~~~l~~l~~~g~~~ii~lplyPqyS~~Tt~s  131 (312)
T pfam00762        93 MRYGPPSIEDALEELKADGVDRIVVLPLYPQYSASTTGS  131 (312)
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf             556899778899999965987699997775423030769


No 406
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=21.07  E-value=65  Score=13.87  Aligned_cols=166  Identities=18%  Similarity=0.271  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC
Q ss_conf             28899999999999988893676330256334554454215765379999999997301-44798613327100114310
Q gi|255764463|r   64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG  142 (337)
                      .-+.+...+++++..+.|.++|-+=.+.+. .+             -.+.++.+++.+| ++-++.|.. +.||      
T Consensus        83 ~~~~~~~~~~~~~~~~~G~~~~Kikvg~~~-~~-------------d~~~v~~ir~~~g~~~~l~vDan-~~~~------  141 (265)
T cd03315          83 LGEPAEVAEEARRALEAGFRTFKLKVGRDP-AR-------------DVAVVAALREAVGDDAELRVDAN-RGWT------  141 (265)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCCH-HH-------------HHHHHHHHHHHCCCCCEEEECCC-CCCC------
T ss_conf             999999999999999759998999768985-99-------------99999999987299967985787-7889------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-C--CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH
Q ss_conf             01365446289999999999999962897352-4--66767799999999987788577300336664354301016753
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIA-P--SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI  219 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-P--SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~  219 (337)
                              -++.+    +.+-...+.|..++= |  .+=.+| .+.+|+.      .+++|.                  
T Consensus       142 --------~~~A~----~~~~~l~~~~i~w~EeP~~~~d~~~-~~~L~~~------~~ipIa------------------  184 (265)
T cd03315         142 --------PKQAI----RALRALEDLGLDYVEQPLPADDLEG-RAALARA------TDTPIM------------------  184 (265)
T ss_pred             --------HHHHH----HHHHHHCCCCCEEEECCCCCCCHHH-HHHHHHC------CCCCEE------------------
T ss_conf             --------99999----9998640058548847899899999-9999851------999999------------------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEECC----HHHHH
Q ss_conf             1024467777443157211478898888766408987995531----145899999996249989999346----18999
Q gi|255764463|r  220 STRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQVS----GEYAM  291 (337)
Q Consensus       220 ~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYqVS----GEYam  291 (337)
                             +|-..|     +..+..+-+.   ...+|++.+||.    +.-.=-|..+.+.+++|+..-+-.    |-.|.
T Consensus       185 -------~gEs~~-----~~~~~~~~i~---~~~~d~v~~d~~~~GGit~~~kia~~A~~~gi~~~~~~~~~s~i~~aA~  249 (265)
T cd03315         185 -------ADESAF-----TPHDAFRELA---LGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLAN  249 (265)
T ss_pred             -------ECCCCC-----CHHHHHHHHH---HHCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHH
T ss_conf             -------089879-----9999999998---7261341408776474999999999999869958978965359999999


Q ss_pred             HHHHHHCCCCC
Q ss_conf             99999888978
Q gi|255764463|r  292 IKAASLQGWIN  302 (337)
Q Consensus       292 i~~a~~~g~~d  302 (337)
                      ++.|+.--.++
T Consensus       250 ~hlaaa~pn~~  260 (265)
T cd03315         250 AHLAAALRAVT  260 (265)
T ss_pred             HHHHHCCCCCC
T ss_conf             99997399999


No 407
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695   Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis.   Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis.  .
Probab=21.04  E-value=65  Score=13.88  Aligned_cols=86  Identities=26%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCHHHCCCCC
Q ss_conf             999999999988893676330256334554-----454215765379999999997301--4479861332710011431
Q gi|255764463|r   69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNN-----TGSHIIDPDNLINEGICAIKKNIP--NIGIITDVALDPFTIHGHD  141 (337)
Q Consensus        69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-----~GseA~n~dglv~rAIr~IK~~fp--dl~vi~DVcLc~YT~hGHc  141 (337)
                      ++...|++..+.|+-++    +|++..--.     .|.+=-+.|.- ++=|++..+.=+  |++||+=+  |.+-.-|- 
T Consensus        90 nvaRTVreme~AGaAa~----HiEDQv~pKrCGHL~gK~lv~~~eM-v~kI~AAv~Ar~De~f~iiART--DA~AvEGl-  161 (287)
T TIGR02317        90 NVARTVREMEDAGAAAV----HIEDQVLPKRCGHLNGKELVSRDEM-VRKIKAAVDARRDEDFVIIART--DARAVEGL-  161 (287)
T ss_pred             HHHHHHHHHHHHHHHHC----CHHHHCCCCCCCCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCEEEECC--HHHHHCCH-
T ss_conf             49999999998445400----4677425442678988740488779-9999997147899972775310--23421365-


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             00136544628999999999999996289735246
Q gi|255764463|r  142 GILCDGEIVNDETIELISHAAVIQADAGADIIAPS  176 (337)
Q Consensus       142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS  176 (337)
                                |..++    =|..|-|||||+|=|=
T Consensus       162 ----------d~AI~----RA~aYvEAGAD~IFpE  182 (287)
T TIGR02317       162 ----------DAAIE----RAKAYVEAGADMIFPE  182 (287)
T ss_pred             ----------HHHHH----HHHHHHHHCCCCCHHH
T ss_conf             ----------88999----9986787261531387


No 408
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=20.97  E-value=65  Score=13.85  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=23.4

Q ss_pred             HHHHHCCCC-EEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             999962897-3524667677999999999877885
Q gi|255764463|r  163 VIQADAGAD-IIAPSEMMDGRVQEIRKKLDSHGHI  196 (337)
Q Consensus       163 l~~A~AGaD-ivAPSdMMDGrV~aIR~~Ld~~g~~  196 (337)
                      ...-++||+ +|.=+.-.+--+.+||..+....|.
T Consensus        93 ~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~  127 (210)
T PRK09935         93 GRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFF  127 (210)
T ss_pred             HHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf             99996687768867899999999999998599536


No 409
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=20.96  E-value=7.8  Score=20.09  Aligned_cols=69  Identities=12%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             HHHHHHHHCCCCCHHHCCCCEEEE------CCCCCEEEC---CCCC-C-----CCCCCHH--HHHHHHHHHHHCCCCEEE
Q ss_conf             889998634778887733116667------589881104---8887-8-----6328899--999999999988893676
Q gi|255764463|r   24 NWIREMVREHRLSVSDLILPIFLT------SGEKTVESI---NSMP-D-----VMRMSID--VAVEKIKQVADLGIPAIA   86 (337)
Q Consensus        24 ~~iR~Lv~Et~Ls~~dLI~PiFV~------eg~~~k~~I---~SMP-G-----v~R~Sid--~L~~eie~~~~lGI~av~   86 (337)
                      +.++.++..+.|.+++. -=+++-      +|.|.-..+   .+|| +     |.|.--.  ..+...-..+..|---+.
T Consensus        32 ~ai~~~l~r~gi~~~~I-d~vi~G~~~~~g~g~n~aR~~~l~aGlp~~vp~~tV~r~CaSG~~Ai~~A~~~I~sG~~dvv  110 (393)
T PRK05790         32 IVIKAALERAGVPPEQV-DEVIMGQVLQAGAGQNPARQAAIKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIV  110 (393)
T ss_pred             HHHHHHHHHCCCCHHHC-CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999829898999-98999933656655549999999679998876489963115768999999998747997689


Q ss_pred             EEECCCC
Q ss_conf             3302563
Q gi|255764463|r   87 IFPNIPM   93 (337)
Q Consensus        87 LFp~I~~   93 (337)
                      |=+++++
T Consensus       111 lagGvEs  117 (393)
T PRK05790        111 VAGGQES  117 (393)
T ss_pred             EEECCCC
T ss_conf             9954432


No 410
>PRK09483 response regulator; Provisional
Probab=20.91  E-value=66  Score=13.84  Aligned_cols=113  Identities=17%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             HHHCCCCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH-HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99628973524-667677999999999877885773003366643543-0101675310244677774431572114788
Q gi|255764463|r  165 QADAGADIIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF-YGPYRDAISTRDLLKGDKKTYYLDPANVQEA  242 (337)
Q Consensus       165 ~A~AGaDivAP-SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f-YgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA  242 (337)
                      .-++||+-.-+ +.-.+--+.+||..+...-|..-.+       +... .+.++      |.  .+..-.++-+     -
T Consensus        93 al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~-------~~~~~~~~~~------~~--~~~~~~~LT~-----R  152 (216)
T PRK09483         93 VMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDI-------AQQMALSQFE------PA--TENPFASLSE-----R  152 (216)
T ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH-------HHHHHHHCCC------CC--CCCCCCCCCH-----H
T ss_conf             9974887899479999999999999985997069899-------9999873237------65--4565456899-----9


Q ss_pred             HHHHHHHHHCCC------CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH
Q ss_conf             988887664089------879955311458999999962499899993461899999999888978899
Q gi|255764463|r  243 IREASIDIQESA------DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKND  305 (337)
Q Consensus       243 ~~e~~~D~~EGA------D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~  305 (337)
                      -+|+..-+.+|-      .-+-+-+..-- --++.+-++       -+|+.---.+..|-++|++|.+.
T Consensus       153 E~eVl~ll~~G~snkeIA~~L~iS~~TV~-~h~~~i~~K-------L~v~~r~el~~~A~~~gli~~~~  213 (216)
T PRK09483        153 ELQIMLMITKGQKVNEISEQLNLSPKTVN-SYRYRMFSK-------LNISGDVELTHLAIRHGLLNAET  213 (216)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHH-HHHHHHHHH-------HCCCCHHHHHHHHHHCCCCCHHH
T ss_conf             99999999879999999999698999999-999999998-------09999999999999959918888


No 411
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS.  The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.65  E-value=66  Score=13.81  Aligned_cols=95  Identities=23%  Similarity=0.367  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC
Q ss_conf             89999999999998889367633025633--4554454215765379999999997301-44798613327100114310
Q gi|255764463|r   66 SIDVAVEKIKQVADLGIPAIAIFPNIPMD--LRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG  142 (337)
Q Consensus        66 Sid~L~~eie~~~~lGI~av~LFp~I~~~--~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG  142 (337)
                      ..+.+.+.++.+.+.|...|=|=-+=|..  .|...|+.-..+-.++.+.++++++..+ -+.|=+=+            
T Consensus        65 ~p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvKiRl------------  132 (231)
T cd02801          65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL------------  132 (231)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEE------------
T ss_conf             89999999998875399999983899969970898307876297899999999997569947999970------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf             013654462899999999999999628973524667677999
Q gi|255764463|r  143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ  184 (337)
Q Consensus       143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~  184 (337)
                          |.-+++.|    .+.+-...++|++.+.    .-||..
T Consensus       133 ----g~~~~~~~----~~~~~~l~~~G~~~lt----vH~Rt~  162 (231)
T cd02801         133 ----GWDDEEET----LELAKALEDAGASALT----VHGRTR  162 (231)
T ss_pred             ----CCCCHHHH----HHHHHHHHHCCCCEEE----EECCCH
T ss_conf             ----77863479----9999999976998999----835614


No 412
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=20.65  E-value=66  Score=13.81  Aligned_cols=13  Identities=31%  Similarity=0.401  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999730144
Q gi|255764463|r  112 EGICAIKKNIPNI  124 (337)
Q Consensus       112 rAIr~IK~~fpdl  124 (337)
                      ..++.||+.-|++
T Consensus        65 ~ll~~i~~~~~~~   77 (464)
T COG2204          65 ELLKEIKSRDPDL   77 (464)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999638999


No 413
>PRK07985 oxidoreductase; Provisional
Probab=20.60  E-value=66  Score=13.80  Aligned_cols=18  Identities=11%  Similarity=0.193  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHCCCEE
Q ss_conf             799999999973014479
Q gi|255764463|r  109 LINEGICAIKKNIPNIGI  126 (337)
Q Consensus       109 lv~rAIr~IK~~fpdl~v  126 (337)
                      -+.+.+..+.++|+.+-+
T Consensus       114 ~v~~lv~~~~~~fG~iDi  131 (294)
T PRK07985        114 FARSLVHEAHKALGGLDI  131 (294)
T ss_pred             HHHHHHHHHHHHHCCCCE
T ss_conf             999999999998599888


No 414
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=20.58  E-value=67  Score=13.80  Aligned_cols=19  Identities=37%  Similarity=0.420  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHCCCEEEE
Q ss_conf             9999999997726999982
Q gi|255764463|r  306 AMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       306 ~~~E~l~~~kRAGAd~Iit  324 (337)
                      ...+-+..++++|||+|+|
T Consensus       210 i~~~kl~~~~~~gAD~ivt  228 (290)
T TIGR03288       210 MTKEKLENMKEAGADCIVN  228 (290)
T ss_pred             HHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999749999980


No 415
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963   This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=20.55  E-value=31  Score=16.07  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=8.4

Q ss_pred             CCHHHCCCCEEEECCCCCEEEC
Q ss_conf             8887733116667589881104
Q gi|255764463|r   35 LSVSDLILPIFLTSGEKTVESI   56 (337)
Q Consensus        35 Ls~~dLI~PiFV~eg~~~k~~I   56 (337)
                      |.+|||||+.+|..=.+-++|+
T Consensus       348 LR~NdL~WnY~vdnYLKG~~P~  369 (541)
T TIGR01838       348 LRENDLIWNYYVDNYLKGKSPV  369 (541)
T ss_pred             CCCCCEEECCCCCCCCCCCCCC
T ss_conf             2468702066304314677578


No 416
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.39  E-value=67  Score=13.77  Aligned_cols=50  Identities=18%  Similarity=0.310  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf             889999999999998889367633025633455445421576537999999999730144798613
Q gi|255764463|r   65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDV  130 (337)
Q Consensus        65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DV  130 (337)
                      -+.+.+.++++...+.|.+++-+=  +.+. +             -...|++|++.+||+.++.|.
T Consensus       136 ~~~e~~~~~~~~~~~~Gf~~~Kik--v~~~-~-------------di~~v~~ir~~~~d~~l~vDa  185 (354)
T cd03317         136 DDVEQLLKQIERYLEEGYKRIKLK--IKPG-W-------------DVEPLKAVRERFPDIPLMADA  185 (354)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEE--CCCH-H-------------HHHHHHHHHHHCCCCEEEEEC
T ss_conf             999999999999997798767640--1851-2-------------599999999865797399626


No 417
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.36  E-value=67  Score=13.77  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECC-------C---HHHHHHHHHHHHHCCCCEEE
Q ss_conf             5721147889888876640898799553-------1---14589999999624998999
Q gi|255764463|r  234 LDPANVQEAIREASIDIQESADMLLVKP-------G---LPYLDVCFRIKEKFGLPTFA  282 (337)
Q Consensus       234 md~~n~~eA~~e~~~D~~EGAD~lMVKP-------a---~~yLDii~~~k~~~~~P~~a  282 (337)
                      ..+.+.++|.+    -++.|||.|++.=       +   .+-+.++.++++.+++|+.+
T Consensus       107 ~~v~s~~~A~~----a~~~GaD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~~ipvia  161 (236)
T cd04730         107 PTVTSVEEARK----AEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIA  161 (236)
T ss_pred             EECCCHHHHHH----HHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             95898999999----99818998999777777788987555677999999982986896


No 418
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=20.09  E-value=51  Score=14.58  Aligned_cols=25  Identities=12%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             CCCCCHHHHHHHHHHHCCC-CCCCEE
Q ss_conf             6767799999999987788-577300
Q gi|255764463|r  177 EMMDGRVQEIRKKLDSHGH-INVGIM  201 (337)
Q Consensus       177 dMMDGrV~aIR~~Ld~~g~-~~~~Im  201 (337)
                      .+||-.||.|-++|++.|. .||.|+
T Consensus       260 ~~vD~~IG~il~~L~e~Gl~dNTiII  285 (500)
T TIGR03417       260 SYLDDKIGELLQTLEETRQADDTIVL  285 (500)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999999999971996672899


No 419
>pfam03431 RNA_replicase_B RNA replicase, beta-chain. This family is of Leviviridae RNA replicases. The replicase is also known as RNA dependent RNA polymerase.
Probab=20.09  E-value=68  Score=13.73  Aligned_cols=70  Identities=26%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             CHHHH--HHHHHHHHHHHHH-------------CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf             62899--9999999999996-------------28973524667677999999999877885773003366643543010
Q gi|255764463|r  150 VNDET--IELISHAAVIQAD-------------AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP  214 (337)
Q Consensus       150 dND~T--l~~L~k~Al~~A~-------------AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP  214 (337)
                      -|--|  ||-|.=.|++.+-             =|-|||.||+.    +....+.|.-.||.--.=-       +-.=||
T Consensus       300 GNGftFELESlIFaAlars~~~l~~~~~~~v~iYGDDII~ps~~----~~~L~~vl~yvGF~pN~~K-------TF~~Gp  368 (539)
T pfam03431       300 GNGFTFELESLIFAALARSVCELLGGRTSDVGIYGDDIIVPTCA----VPPLMEVLSYVGFTPNLKK-------TFTSGP  368 (539)
T ss_pred             CCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECHHH----HHHHHHHHHHHCCCCCCCC-------CCCCCC
T ss_conf             68426658999999999999999668875058843746632222----1899999988075468666-------435686


Q ss_pred             HHHHHHCCCCCCC-CCCC
Q ss_conf             1675310244677-7744
Q gi|255764463|r  215 YRDAISTRDLLKG-DKKT  231 (337)
Q Consensus       215 FRdA~~S~p~~~g-dr~s  231 (337)
                      ||+-.|-. -|.| |-+.
T Consensus       369 FRESCGkH-~f~GvDVtP  385 (539)
T pfam03431       369 FRESCGKH-YFAGVDVTP  385 (539)
T ss_pred             CHHHHHHH-HCCCCCCCC
T ss_conf             14455454-306777754


No 420
>pfam02057 Glyco_hydro_59 Glycosyl hydrolase family 59.
Probab=20.05  E-value=68  Score=13.73  Aligned_cols=95  Identities=21%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCC----CCHHHHHHHHHH-HHHHHHHCCC--CEEEC---CCCCCC
Q ss_conf             9999999730144798613327100114310013654----462899999999-9999996289--73524---667677
Q gi|255764463|r  112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGE----IVNDETIELISH-AAVIQADAGA--DIIAP---SEMMDG  181 (337)
Q Consensus       112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~----IdND~Tl~~L~k-~Al~~A~AGa--DivAP---SdMMDG  181 (337)
                      .-++..|+.-|+|-++.    =|.   +-=|-+.+|.    ..-+.|..-... +--.+..-|-  |.|.+   ..--..
T Consensus       116 wLm~eAKkrNPnIkl~g----LpW---~~PGWvg~g~~~p~~~~~~ta~Y~~~Wilga~~~hgl~iDYig~wNEr~~~~~  188 (669)
T pfam02057       116 WLMKEAKKRNPNIILMG----LPW---SFPGWLGKGFSWPYVNLQLTAYYVVTWIVGAKHYHDLDIDYIGIWNERSFDAN  188 (669)
T ss_pred             EEHHHHHHHCCCCEEEE----ECC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH
T ss_conf             24455775389966867----136---78730268877876466788899999999899863987177511004688757


Q ss_pred             HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf             9999999998778857730033666435430101675
Q gi|255764463|r  182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA  218 (337)
Q Consensus       182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA  218 (337)
                      -|+..|++||.+||.+|.|..--     ++.+|+-++
T Consensus       189 ~ik~lR~~ld~~g~~~vKIVa~D-----~~w~~i~~~  220 (669)
T pfam02057       189 YIKELRKMLNYQGLQRVKIIASD-----NLWEPISAS  220 (669)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEC-----CCCCCCHHH
T ss_conf             99999999866443644899957-----887665344


Done!