Query gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 337
No_of_seqs 171 out of 1711
Neff 4.7
Searched_HMMs 39220
Date Sun May 29 15:34:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764463.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam00490 ALAD Delta-aminolevu 100.0 0 0 1126.8 33.2 322 12-334 1-322 (322)
2 cd04823 ALAD_PBGS_aspartate_ri 100.0 0 0 1122.2 33.2 320 15-335 1-320 (320)
3 PRK09283 delta-aminolevulinic 100.0 0 0 1115.7 33.5 321 10-335 1-321 (321)
4 COG0113 HemB Delta-aminolevuli 100.0 0 0 1106.1 33.0 328 9-337 2-330 (330)
5 PRK13384 delta-aminolevulinic 100.0 0 0 1105.8 33.0 322 8-333 2-323 (323)
6 cd00384 ALAD_PBGS Porphobilino 100.0 0 0 1092.2 33.1 314 18-334 1-314 (314)
7 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 0 0 1071.9 32.8 312 22-334 5-320 (320)
8 KOG2794 consensus 100.0 0 0 912.8 28.4 330 6-336 7-338 (340)
9 PRK07028 bifunctional hexulose 97.3 0.0085 2.2E-07 40.1 11.5 173 64-326 12-191 (429)
10 TIGR03551 F420_cofH 7,8-dideme 96.2 0.024 6.2E-07 37.0 6.9 221 57-320 62-314 (343)
11 PRK07360 FO synthase subunit 2 95.5 0.053 1.4E-06 34.7 6.5 221 57-321 83-341 (375)
12 PRK12331 oxaloacetate decarbox 95.4 0.14 3.6E-06 31.9 8.3 233 59-328 87-345 (463)
13 COG5016 Pyruvate/oxaloacetate 95.4 0.17 4.4E-06 31.3 8.5 215 59-320 89-333 (472)
14 PRK08445 hypothetical protein; 95.3 0.06 1.5E-06 34.4 6.1 220 57-335 65-329 (348)
15 COG1060 ThiH Thiamine biosynth 95.3 0.11 2.8E-06 32.7 7.4 227 60-336 85-348 (370)
16 PRK08508 biotin synthase; Prov 95.1 0.23 5.9E-06 30.4 8.5 102 62-196 36-152 (279)
17 PRK12999 pyruvate carboxylase; 95.0 0.18 4.6E-06 31.2 7.8 224 59-316 619-867 (1147)
18 PRK11320 prpB 2-methylisocitra 95.0 0.12 3.1E-06 32.3 6.9 164 110-320 66-258 (292)
19 PRK07094 biotin synthase; Prov 94.9 0.4 1E-05 28.8 10.3 101 60-196 65-180 (323)
20 PRK09282 pyruvate carboxylase 94.9 0.27 7E-06 29.9 8.4 230 59-327 88-342 (580)
21 PRK12581 oxaloacetate decarbox 94.7 0.34 8.5E-06 29.3 8.4 227 59-328 96-354 (468)
22 PRK08645 bifunctional homocyst 94.5 0.37 9.5E-06 29.0 8.4 228 57-322 31-268 (608)
23 PRK08444 hypothetical protein; 94.4 0.23 5.9E-06 30.4 7.2 241 58-334 73-333 (353)
24 PRK05927 hypothetical protein; 94.4 0.14 3.6E-06 31.9 6.0 205 57-320 68-317 (350)
25 PRK09234 fbiC FO synthase; Rev 94.4 0.17 4.3E-06 31.4 6.3 104 198-324 537-648 (846)
26 PRK12330 oxaloacetate decarbox 94.3 0.46 1.2E-05 28.4 8.4 259 17-326 56-343 (499)
27 PRK09549 mtnW 2,3-diketo-5-met 94.2 0.35 8.9E-06 29.2 7.7 145 152-324 152-300 (411)
28 pfam02548 Pantoate_transf Keto 94.2 0.59 1.5E-05 27.7 11.2 50 124-175 132-181 (261)
29 TIGR00423 TIGR00423 conserved 94.2 0.09 2.3E-06 33.2 4.6 146 60-217 31-231 (331)
30 PRK13307 bifunctional formalde 93.9 0.12 3.1E-06 32.3 4.9 138 111-325 214-358 (392)
31 TIGR03332 salvage_mtnW 2,3-dik 93.8 0.53 1.4E-05 28.0 8.0 144 152-323 151-298 (407)
32 PRK06256 biotin synthase; Vali 93.7 0.72 1.8E-05 27.1 9.5 103 59-195 81-200 (325)
33 PRK00311 panB 3-methyl-2-oxobu 93.3 0.83 2.1E-05 26.7 8.7 101 54-175 80-182 (266)
34 PRK08645 bifunctional homocyst 93.3 0.84 2.2E-05 26.6 17.0 227 43-323 100-358 (608)
35 cd06557 KPHMT-like Ketopantoat 93.3 0.85 2.2E-05 26.6 9.5 123 123-253 127-251 (254)
36 pfam00478 IMPDH IMP dehydrogen 93.1 0.9 2.3E-05 26.4 9.7 96 69-202 223-331 (467)
37 cd00377 ICL_PEPM Members of th 93.0 0.87 2.2E-05 26.5 8.0 83 177-287 124-206 (243)
38 cd00377 ICL_PEPM Members of th 92.9 0.96 2.4E-05 26.3 10.5 137 24-201 59-200 (243)
39 TIGR03326 rubisco_III ribulose 92.5 1.1 2.8E-05 25.9 8.3 145 153-325 157-305 (412)
40 PRK05926 hypothetical protein; 92.3 0.49 1.3E-05 28.2 6.0 59 57-126 92-150 (371)
41 TIGR01108 oadA oxaloacetate de 91.7 1.3 3.4E-05 25.2 8.7 213 59-308 82-319 (616)
42 pfam05853 DUF849 Prokaryotic p 91.3 1.5 3.7E-05 25.0 8.1 78 44-128 2-80 (274)
43 COG0269 SgbH 3-hexulose-6-phos 91.3 0.6 1.5E-05 27.7 5.5 168 64-325 12-192 (217)
44 cd04729 NanE N-acetylmannosami 91.3 1 2.6E-05 26.1 6.7 172 57-325 16-206 (219)
45 PRK10200 putative racemase; Pr 91.3 0.86 2.2E-05 26.6 6.3 68 150-221 56-144 (230)
46 TIGR01302 IMP_dehydrog inosine 91.0 1.3 3.3E-05 25.4 7.0 65 71-173 241-305 (476)
47 PRK09240 thiH thiamine biosynt 91.0 0.76 1.9E-05 26.9 5.8 221 62-323 101-361 (371)
48 pfam00682 HMGL-like HMGL-like. 90.6 1.3 3.2E-05 25.4 6.6 199 59-324 6-212 (237)
49 KOG0369 consensus 90.6 1.3 3.3E-05 25.4 6.7 174 60-274 710-916 (1176)
50 TIGR01108 oadA oxaloacetate de 90.4 1.2 3.1E-05 25.6 6.4 99 65-196 147-252 (616)
51 PRK13305 sgbH 3-keto-L-gulonat 90.2 0.74 1.9E-05 27.0 5.1 168 63-325 11-191 (220)
52 cd00381 IMPDH IMPDH: The catal 90.0 1.9 4.8E-05 24.2 7.9 39 110-173 122-160 (325)
53 PRK07534 methionine synthase I 90.0 1.9 4.9E-05 24.2 10.1 220 68-322 45-275 (335)
54 TIGR00677 fadh2_euk methylenet 89.8 2 5E-05 24.1 7.4 104 63-175 75-192 (312)
55 COG0646 MetH Methionine syntha 89.2 0.97 2.5E-05 26.2 5.1 186 116-322 7-224 (311)
56 cd02803 OYE_like_FMN_family Ol 88.9 2.3 5.8E-05 23.7 13.4 41 262-302 266-306 (327)
57 PRK03620 5-dehydro-4-deoxygluc 88.7 1.5 3.7E-05 25.0 5.7 112 61-204 15-133 (296)
58 pfam00016 RuBisCO_large Ribulo 88.4 2.5 6.3E-05 23.5 7.9 143 153-324 27-175 (309)
59 COG1038 PycA Pyruvate carboxyl 87.2 2.9 7.4E-05 23.0 7.9 107 61-191 623-737 (1149)
60 TIGR03249 KdgD 5-dehydro-4-deo 87.2 1.8 4.6E-05 24.4 5.5 156 59-277 17-179 (296)
61 PRK03170 dihydrodipicolinate s 85.9 2.8 7.2E-05 23.1 5.9 163 63-285 17-186 (292)
62 PRK13306 ulaD 3-keto-L-gulonat 85.7 0.87 2.2E-05 26.5 3.2 79 64-179 12-90 (216)
63 cd02931 ER_like_FMN Enoate red 85.2 3.6 9.3E-05 22.3 9.7 108 69-177 151-273 (382)
64 TIGR03128 RuMP_HxlA 3-hexulose 85.0 1.7 4.4E-05 24.5 4.4 87 64-187 8-99 (206)
65 PRK01362 putative translaldola 84.9 3.7 9.5E-05 22.3 9.1 94 65-202 61-162 (214)
66 PRK09275 aspartate aminotransf 84.9 1.7 4.4E-05 24.5 4.4 62 71-139 235-309 (531)
67 PRK12655 fructose-6-phosphate 84.3 1.6 4E-05 24.8 4.0 49 154-203 109-165 (220)
68 PRK12656 fructose-6-phosphate 84.0 1.9 4.8E-05 24.3 4.3 45 158-203 115-167 (222)
69 PRK04147 N-acetylneuraminate l 84.0 3.4 8.7E-05 22.5 5.6 114 63-207 19-140 (294)
70 cd02930 DCR_FMN 2,4-dienoyl-Co 83.9 4.1 0.00011 22.0 13.6 92 71-176 140-244 (353)
71 cd02932 OYE_YqiM_FMN Old yello 82.6 4.6 0.00012 21.6 8.5 40 264-303 277-316 (336)
72 cd06556 ICL_KPHMT Members of t 82.4 4.7 0.00012 21.6 8.7 38 242-281 158-195 (240)
73 pfam00701 DHDPS Dihydrodipicol 81.9 4.4 0.00011 21.8 5.5 112 63-205 17-135 (289)
74 cd00945 Aldolase_Class_I Class 81.6 5 0.00013 21.4 14.1 174 66-324 11-200 (201)
75 PRK01060 endonuclease IV; Prov 81.6 5 0.00013 21.4 5.9 209 25-279 51-280 (281)
76 TIGR02351 thiH thiazole biosyn 81.3 4.4 0.00011 21.8 5.3 74 63-145 103-181 (378)
77 PRK12653 fructose-6-phosphate 79.7 2.6 6.6E-05 23.3 3.7 90 107-203 66-165 (220)
78 PRK06954 acetyl-CoA acetyltran 79.0 0.27 6.8E-06 30.0 -1.5 139 61-210 175-327 (397)
79 pfam02574 S-methyl_trans Homoc 78.6 6.2 0.00016 20.8 14.9 229 67-322 37-283 (303)
80 cd04734 OYE_like_3_FMN Old yel 78.3 6.4 0.00016 20.7 14.1 44 261-304 269-312 (343)
81 COG0685 MetF 5,10-methylenetet 78.3 6.4 0.00016 20.7 9.6 128 52-199 77-205 (291)
82 PRK07807 inositol-5-monophosph 78.0 6.5 0.00017 20.6 6.8 36 250-285 236-276 (479)
83 COG0176 MipB Transaldolase [Ca 77.4 4.2 0.00011 21.9 4.2 103 103-210 72-185 (239)
84 COG1850 RbcL Ribulose 1,5-bisp 77.3 6.8 0.00017 20.5 6.9 104 151-282 166-279 (429)
85 pfam01208 URO-D Uroporphyrinog 77.3 5.3 0.00013 21.2 4.7 178 108-324 119-313 (337)
86 cd04723 HisA_HisF Phosphoribos 76.6 7.1 0.00018 20.4 6.6 43 263-324 175-217 (233)
87 TIGR00875 talC transaldolase, 76.4 4.2 0.00011 21.9 4.0 160 44-237 19-190 (216)
88 KOG2335 consensus 75.9 6 0.00015 20.9 4.7 191 25-264 33-243 (358)
89 TIGR01182 eda 2-dehydro-3-deox 75.4 1.9 4.7E-05 24.3 2.0 111 66-218 18-150 (205)
90 cd00952 CHBPH_aldolase Trans-o 75.2 7.7 0.0002 20.1 6.3 112 64-205 25-143 (309)
91 PRK07491 consensus 74.7 0.25 6.3E-06 30.2 -2.7 142 61-210 169-322 (392)
92 smart00518 AP2Ec AP endonuclea 74.4 5.9 0.00015 20.9 4.3 186 43-263 60-259 (273)
93 cd00950 DHDPS Dihydrodipicolin 74.4 8.1 0.00021 20.0 5.8 166 63-288 16-188 (284)
94 PRK04208 rbcL ribulose bisopho 74.3 8.1 0.00021 20.0 8.4 136 153-324 172-320 (467)
95 KOG3111 consensus 73.8 4 0.0001 22.1 3.3 148 153-324 14-196 (224)
96 pfam01487 DHquinase_I Type I 3 73.5 8.5 0.00022 19.9 8.1 176 66-296 8-193 (222)
97 pfam00923 Transaldolase Transa 73.1 5.1 0.00013 21.3 3.7 67 104-175 85-154 (244)
98 KOG0564 consensus 73.0 8.7 0.00022 19.8 6.6 204 63-304 87-302 (590)
99 cd00951 KDGDH 5-dehydro-4-deox 72.9 8.7 0.00022 19.8 5.6 117 56-204 9-132 (289)
100 PRK00115 hemE uroporphyrinogen 72.9 6.7 0.00017 20.5 4.3 74 107-181 121-212 (347)
101 PRK01130 N-acetylmannosamine-6 72.4 8.9 0.00023 19.7 8.2 169 58-324 13-202 (222)
102 PRK02412 aroD 3-dehydroquinate 72.2 9.1 0.00023 19.7 9.3 178 65-295 25-217 (253)
103 cd01846 fatty_acyltransferase_ 72.0 9.1 0.00023 19.6 6.4 31 66-97 129-159 (270)
104 COG2513 PrpB PEP phosphonomuta 71.8 9.3 0.00024 19.6 9.8 107 67-194 92-202 (289)
105 KOG1579 consensus 71.7 6.9 0.00018 20.5 4.1 220 68-322 53-294 (317)
106 pfam04309 G3P_antiterm Glycero 71.6 9.3 0.00024 19.6 7.9 54 252-325 115-168 (174)
107 TIGR01832 kduD 2-deoxy-D-gluco 71.4 2.4 6.2E-05 23.5 1.8 26 160-185 20-47 (249)
108 COG3543 Uncharacterized conser 71.3 3.6 9.3E-05 22.3 2.6 40 113-155 32-75 (135)
109 PRK05692 hydroxymethylglutaryl 70.9 9.6 0.00025 19.5 6.1 27 60-87 19-45 (287)
110 cd00452 KDPG_aldolase KDPG and 70.9 5.5 0.00014 21.1 3.5 130 63-276 11-141 (190)
111 pfam05582 Peptidase_U57 YabG p 70.1 10 0.00026 19.3 5.8 73 49-147 94-170 (287)
112 COG2040 MHT1 Homocysteine/sele 70.0 4.8 0.00012 21.5 3.0 245 42-323 8-279 (300)
113 cd00956 Transaldolase_FSA Tran 69.1 10 0.00025 19.4 4.5 93 66-202 62-162 (211)
114 TIGR01035 hemA glutamyl-tRNA r 68.9 2.6 6.6E-05 23.3 1.5 39 39-78 282-324 (436)
115 PRK06843 inositol-5-monophosph 68.3 11 0.00028 19.1 7.4 44 159-202 205-261 (404)
116 pfam06838 Alum_res Aluminium r 68.0 5.4 0.00014 21.1 3.0 30 109-138 177-206 (405)
117 PRK00366 ispG 4-hydroxy-3-meth 67.8 11 0.00029 19.0 7.3 102 47-165 21-128 (367)
118 PRK05458 guanosine 5'-monophos 67.7 11 0.00029 19.0 4.7 51 33-83 29-87 (326)
119 cd00408 DHDPS-like Dihydrodipi 67.6 11 0.00029 19.0 5.8 166 64-289 14-186 (281)
120 TIGR01818 ntrC nitrogen regula 67.6 11 0.00029 19.0 4.7 87 232-320 23-117 (471)
121 pfam04131 NanE Putative N-acet 67.5 3.7 9.6E-05 22.2 2.0 66 235-324 98-172 (192)
122 PRK08904 consensus 67.3 8.3 0.00021 19.9 3.8 127 65-276 19-148 (207)
123 PRK13209 L-xylulose 5-phosphat 67.3 5.9 0.00015 20.9 3.0 71 14-90 46-121 (283)
124 PRK02615 thiamine-phosphate py 67.2 11 0.00029 19.0 5.0 58 247-324 252-319 (345)
125 cd00717 URO-D Uroporphyrinogen 67.2 11 0.00029 19.0 5.0 76 105-181 109-202 (335)
126 pfam01081 Aldolase KDPG and KH 67.1 11 0.00027 19.2 4.3 136 60-280 12-151 (196)
127 PRK13398 3-deoxy-7-phosphohept 66.9 12 0.0003 18.9 5.6 74 44-134 28-102 (266)
128 PRK06512 thiamine-phosphate py 66.8 12 0.0003 18.9 6.7 169 52-324 5-191 (221)
129 pfam04551 GcpE GcpE protein. I 66.6 12 0.0003 18.9 8.2 100 47-163 10-115 (345)
130 pfam01076 Mob_Pre Plasmid reco 66.0 12 0.00031 18.8 5.7 39 107-145 101-140 (196)
131 pfam03437 BtpA BtpA family. Th 64.5 13 0.00033 18.6 14.7 173 55-283 10-206 (254)
132 PRK09485 mmuM homocysteine met 64.5 13 0.00033 18.6 14.2 223 67-322 45-289 (308)
133 TIGR02855 spore_yabG sporulati 64.4 6.3 0.00016 20.7 2.7 80 47-152 99-183 (292)
134 PRK08041 consensus 64.4 0.63 1.6E-05 27.5 -2.4 143 60-208 168-320 (391)
135 PRK07188 nicotinate phosphorib 64.3 5.4 0.00014 21.2 2.3 21 182-202 271-291 (355)
136 cd00954 NAL N-Acetylneuraminic 63.6 13 0.00034 18.5 6.3 111 64-204 17-135 (288)
137 PRK06857 consensus 63.4 11 0.00029 19.0 3.9 136 60-280 16-155 (209)
138 PRK08104 consensus 63.0 11 0.00029 19.0 3.8 132 65-280 24-158 (212)
139 PRK07455 keto-hydroxyglutarate 62.8 10 0.00026 19.3 3.5 135 62-281 19-157 (210)
140 PRK05283 deoxyribose-phosphate 62.7 14 0.00035 18.4 7.7 137 14-178 17-170 (258)
141 TIGR01163 rpe ribulose-phospha 62.1 7.6 0.00019 20.2 2.8 144 154-324 10-196 (216)
142 PRK06015 keto-hydroxyglutarate 61.8 10 0.00026 19.4 3.4 131 66-281 25-159 (212)
143 cd04733 OYE_like_2_FMN Old yel 61.8 14 0.00037 18.3 15.4 42 263-304 278-319 (338)
144 TIGR02841 spore_YyaC putative 61.7 14 0.00037 18.3 4.9 57 75-141 24-81 (140)
145 COG0329 DapA Dihydrodipicolina 61.4 15 0.00037 18.2 6.0 163 64-286 21-191 (299)
146 PTZ00314 inosine-5'-monophosph 61.2 15 0.00038 18.2 7.5 14 160-173 291-304 (499)
147 PRK05718 keto-hydroxyglutarate 60.8 14 0.00035 18.4 3.9 130 66-280 25-158 (212)
148 TIGR00566 trpG_papA glutamine 60.8 4.1 0.0001 22.0 1.2 81 71-188 42-127 (212)
149 PRK08782 consensus 60.7 13 0.00033 18.6 3.8 71 65-176 26-97 (219)
150 cd01837 SGNH_plant_lipase_like 60.5 15 0.00039 18.2 6.2 22 67-88 163-184 (315)
151 cd03328 MR_like_3 Mandelate ra 60.2 15 0.00039 18.1 7.9 130 60-204 132-293 (352)
152 cd03465 URO-D_like The URO-D _ 60.2 15 0.00039 18.1 6.9 181 109-324 110-307 (330)
153 pfam01188 MR_MLE Mandelate rac 60.2 15 0.00039 18.1 5.6 50 68-130 2-52 (98)
154 cd06563 GH20_chitobiase-like T 59.2 16 0.00041 18.0 7.1 129 44-197 37-198 (357)
155 pfam01261 AP_endonuc_2 Xylose 59.2 11 0.00027 19.2 3.1 89 24-126 29-117 (201)
156 TIGR02104 pulA_typeI pullulana 59.0 16 0.00041 18.0 4.4 62 70-132 184-271 (655)
157 PRK05567 inositol-5'-monophosp 58.9 16 0.00041 18.0 11.8 19 110-128 256-274 (486)
158 PRK09140 2-dehydro-3-deoxy-6-p 58.7 15 0.00037 18.3 3.7 74 62-176 16-91 (206)
159 pfam00977 His_biosynth Histidi 58.6 16 0.00041 17.9 7.3 184 68-324 29-219 (229)
160 pfam01177 Asp_Glu_race Asp/Glu 57.6 17 0.00043 17.8 12.3 99 182-281 93-201 (212)
161 PRK12344 putative alpha-isopro 57.5 17 0.00043 17.8 13.7 51 62-123 152-202 (530)
162 PRK13210 putative L-xylulose 5 57.5 17 0.00043 17.8 4.9 116 69-198 17-147 (284)
163 TIGR01928 menC_lowGC/arch o-su 56.8 17 0.00044 17.7 5.3 56 65-137 133-188 (326)
164 PRK08662 nicotinate phosphorib 56.7 8.2 0.00021 19.9 2.2 25 178-202 242-266 (343)
165 cd03322 rpsA The starvation se 56.3 18 0.00045 17.7 5.2 77 39-137 99-176 (361)
166 TIGR01496 DHPS dihydropteroate 56.2 13 0.00034 18.6 3.2 109 42-173 126-250 (268)
167 PRK06845 consensus 55.7 0.79 2E-05 26.8 -3.1 71 23-93 31-118 (392)
168 cd03327 MR_like_2 Mandelate ra 55.4 18 0.00047 17.6 7.1 191 40-297 93-291 (341)
169 PRK07114 keto-hydroxyglutarate 55.1 17 0.00043 17.8 3.6 75 65-176 25-100 (223)
170 cd04732 HisA HisA. Phosphorib 54.9 19 0.00048 17.5 6.7 57 248-323 154-217 (234)
171 TIGR03550 F420_cofG 7,8-dideme 54.4 19 0.00048 17.5 7.4 39 57-95 27-65 (322)
172 cd03411 Ferrochelatase_N Ferro 54.4 19 0.00048 17.5 4.4 58 63-127 94-153 (159)
173 KOG0133 consensus 54.0 13 0.00033 18.6 2.9 70 9-86 6-77 (531)
174 cd00003 PNPsynthase Pyridoxine 53.9 19 0.00048 17.5 3.7 139 41-213 82-222 (234)
175 KOG2804 consensus 53.9 11 0.00029 19.0 2.5 28 110-137 79-106 (348)
176 TIGR03234 OH-pyruv-isom hydrox 53.3 20 0.0005 17.4 3.7 20 69-88 15-34 (254)
177 cd03319 L-Ala-DL-Glu_epimerase 53.2 20 0.0005 17.4 5.0 53 252-305 250-312 (316)
178 PRK06690 acetyl-CoA acetyltran 53.2 1.3 3.3E-05 25.4 -2.4 137 56-210 140-290 (361)
179 TIGR00459 aspS_bact aspartyl-t 53.0 7.6 0.00019 20.2 1.5 22 183-204 158-181 (653)
180 PRK06552 keto-hydroxyglutarate 52.6 18 0.00046 17.6 3.4 71 64-175 21-95 (209)
181 cd02933 OYE_like_FMN Old yello 52.6 20 0.00052 17.3 10.1 166 68-276 152-331 (338)
182 cd00957 Transaldolase_TalAB Tr 52.2 21 0.00052 17.3 3.9 148 100-276 97-254 (313)
183 PRK09958 DNA-binding transcrip 51.8 12 0.00032 18.7 2.5 29 166-194 92-121 (204)
184 TIGR01769 GGGP geranylgeranylg 51.1 11 0.00029 19.0 2.1 123 61-189 37-180 (212)
185 TIGR00737 nifR3_yhdG putative 50.6 22 0.00055 17.1 6.1 88 223-331 145-248 (336)
186 PRK08255 salicylyl-CoA 5-hydro 50.6 22 0.00055 17.1 9.0 94 70-177 558-664 (770)
187 KOG2648 consensus 50.2 22 0.00056 17.0 4.2 139 48-206 19-186 (453)
188 PRK05826 pyruvate kinase; Prov 49.5 23 0.00058 17.0 4.0 39 165-203 182-221 (461)
189 COG2877 KdsA 3-deoxy-D-manno-o 49.1 23 0.00058 16.9 8.9 133 42-199 16-163 (279)
190 cd03321 mandelate_racemase Man 48.7 23 0.00059 16.9 6.3 63 55-130 130-193 (355)
191 cd03329 MR_like_4 Mandelate ra 48.4 23 0.0006 16.9 5.8 79 39-130 110-196 (368)
192 cd01571 NAPRTase_B Nicotinate 48.4 14 0.00036 18.3 2.3 19 183-201 231-249 (302)
193 PRK10403 transcriptional regul 48.2 24 0.0006 16.8 7.8 31 166-196 99-130 (215)
194 pfam02219 MTHFR Methylenetetra 48.2 24 0.0006 16.8 8.8 126 54-195 71-198 (286)
195 PRK06259 succinate dehydrogena 48.0 24 0.00061 16.8 4.4 21 305-325 438-458 (491)
196 COG5561 Predicted metal-bindin 47.9 20 0.00051 17.3 3.0 37 245-281 48-94 (101)
197 PRK06445 acetyl-CoA acetyltran 47.8 2.9 7.4E-05 23.0 -1.3 23 173-195 285-307 (394)
198 TIGR01125 TIGR01125 MiaB-like 47.5 24 0.00062 16.8 4.0 58 43-104 167-228 (475)
199 pfam09370 TIM-br_sig_trns TIM- 47.5 15 0.00038 18.2 2.3 77 72-176 99-177 (268)
200 TIGR00651 pta phosphate acetyl 47.3 5.5 0.00014 21.1 0.1 82 109-209 118-208 (322)
201 PRK00043 thiE thiamine-phospha 47.2 24 0.00062 16.7 7.8 163 57-323 4-184 (210)
202 PRK05265 pyridoxine 5'-phospha 46.8 25 0.00063 16.7 3.8 139 41-213 85-225 (240)
203 KOG3020 consensus 45.8 9.6 0.00024 19.5 1.1 18 72-89 36-53 (296)
204 pfam06506 PrpR_N Propionate ca 45.2 26 0.00067 16.5 5.6 56 232-294 102-157 (169)
205 PRK07107 inositol-5-monophosph 45.1 26 0.00067 16.5 5.8 39 247-285 248-292 (497)
206 PRK13397 3-deoxy-7-phosphohept 45.1 26 0.00067 16.5 6.5 73 44-133 16-89 (250)
207 PRK08234 consensus 45.0 26 0.00067 16.5 4.9 135 61-210 176-329 (400)
208 pfam00128 Alpha-amylase Alpha 44.8 27 0.00068 16.5 6.4 62 67-132 3-74 (314)
209 cd02067 B12-binding B12 bindin 44.6 27 0.00068 16.5 3.8 51 151-204 35-88 (119)
210 cd03307 Mta_CmuA_like MtaA_Cmu 44.4 27 0.00069 16.5 9.6 73 108-181 112-196 (326)
211 PRK11361 acetoacetate metaboli 44.4 27 0.00069 16.5 4.1 10 114-123 67-76 (457)
212 PRK09490 metH B12-dependent me 44.3 27 0.00069 16.5 6.1 172 151-326 288-489 (1229)
213 TIGR03649 ergot_EASG ergot alk 43.9 27 0.0007 16.4 9.9 121 204-325 135-261 (285)
214 COG0821 gcpE 1-hydroxy-2-methy 43.8 27 0.0007 16.4 8.2 71 46-133 14-84 (361)
215 PRK09350 lysyl-tRNA synthetase 43.6 8.3 0.00021 19.9 0.5 24 73-99 80-103 (325)
216 PRK07661 acetyl-CoA acetyltran 43.4 6.4 0.00016 20.7 -0.1 44 164-210 269-314 (384)
217 COG3010 NanE Putative N-acetyl 43.0 18 0.00047 17.6 2.2 197 55-335 20-223 (229)
218 cd06406 PB1_P67 A PB1 domain i 42.9 22 0.00056 17.1 2.6 29 257-285 15-43 (80)
219 COG3366 Uncharacterized protei 42.5 19 0.00049 17.5 2.2 25 284-308 231-255 (311)
220 PRK07025 consensus 42.3 3.4 8.6E-05 22.6 -1.7 29 164-195 278-306 (393)
221 PRK07850 acetyl-CoA acetyltran 41.9 7.5 0.00019 20.2 0.1 44 163-209 271-316 (387)
222 PHA00452 T3/T7-like RNA polyme 41.8 29 0.00075 16.2 3.5 199 64-272 300-551 (816)
223 COG1523 PulA Type II secretory 41.7 29 0.00075 16.2 3.9 90 40-134 173-289 (697)
224 cd04726 KGPDC_HPS 3-Keto-L-gul 41.5 30 0.00076 16.2 6.5 75 64-175 9-83 (202)
225 PRK02048 4-hydroxy-3-methylbut 41.5 30 0.00076 16.2 6.1 71 48-134 21-95 (613)
226 pfam12010 DUF3502 Domain of un 41.5 18 0.00045 17.7 1.9 51 284-337 89-139 (140)
227 COG2048 HdrB Heterodisulfide r 41.4 29 0.00073 16.3 3.0 20 305-324 209-228 (293)
228 COG1578 Uncharacterized conser 41.3 27 0.0007 16.4 2.9 81 65-174 120-208 (285)
229 PRK09268 acetyl-CoA acetyltran 41.1 25 0.00063 16.7 2.6 134 61-209 190-341 (428)
230 cd01568 QPRTase_NadC Quinolina 41.1 30 0.00077 16.1 6.6 94 210-326 162-256 (269)
231 PRK13435 response regulator; P 41.0 22 0.00057 17.0 2.4 60 237-302 33-96 (141)
232 PRK09052 acetyl-CoA acetyltran 41.0 7.4 0.00019 20.3 -0.1 43 165-210 285-329 (399)
233 pfam02679 ComA (2R)-phospho-3- 40.9 30 0.00077 16.1 7.5 149 94-286 41-206 (245)
234 PRK09390 fixJ response regulat 40.5 31 0.00078 16.1 4.1 11 113-123 65-75 (202)
235 PRK06205 acetyl-CoA acetyltran 40.5 9.5 0.00024 19.5 0.4 136 61-210 173-330 (404)
236 COG1794 RacX Aspartate racemas 40.2 31 0.00079 16.0 3.6 64 150-213 56-135 (230)
237 PRK08170 acetyl-CoA acetyltran 40.0 3 7.5E-05 22.9 -2.2 144 60-210 188-339 (426)
238 cd03316 MR_like Mandelate race 39.7 32 0.00081 16.0 6.8 81 42-130 113-196 (357)
239 PRK09441 cytoplasmic alpha-amy 39.6 32 0.00081 16.0 6.3 23 67-89 21-43 (482)
240 TIGR00620 sporelyase spore pho 39.2 32 0.00082 15.9 3.0 66 32-124 82-147 (199)
241 cd03325 D-galactonate_dehydrat 38.6 33 0.00084 15.9 3.8 87 40-131 97-184 (352)
242 COG0800 Eda 2-keto-3-deoxy-6-p 38.5 19 0.00049 17.4 1.7 74 62-176 19-93 (211)
243 PRK05656 acetyl-CoA acetyltran 38.4 2 5.2E-05 24.0 -3.3 43 164-209 278-322 (392)
244 PRK09613 thiH thiamine biosynt 38.1 33 0.00085 15.8 6.0 86 63-157 113-208 (471)
245 PRK08235 acetyl-CoA acetyltran 37.2 3.7 9.5E-05 22.3 -2.1 38 163-203 277-316 (393)
246 pfam10996 Beta-Casp Beta-Casp 37.2 26 0.00066 16.6 2.2 38 167-206 77-117 (124)
247 cd04739 DHOD_like Dihydroorota 37.1 35 0.00088 15.7 5.0 89 64-177 108-196 (325)
248 cd06437 CESA_CaSu_A2 Cellulose 37.0 35 0.00088 15.7 8.2 77 103-196 9-89 (232)
249 TIGR01930 AcCoA-C-Actrans acet 36.8 13 0.00033 18.6 0.6 135 49-196 180-344 (447)
250 TIGR01513 NAPRTase_put putativ 36.7 21 0.00054 17.1 1.7 47 155-201 264-320 (523)
251 PRK03991 threonyl-tRNA synthet 36.7 35 0.0009 15.7 3.4 12 79-90 69-80 (613)
252 pfam08029 HisG_C HisG, C-termi 36.7 35 0.0009 15.7 3.0 23 303-325 46-68 (73)
253 PRK06504 acetyl-CoA acetyltran 36.6 13 0.00033 18.6 0.6 43 164-209 275-319 (390)
254 pfam03060 NPD 2-nitropropane d 36.4 35 0.00091 15.6 5.1 103 68-184 101-207 (330)
255 KOG0478 consensus 36.2 25 0.00063 16.7 2.0 113 54-170 411-562 (804)
256 PRK10840 transcriptional regul 36.2 36 0.00091 15.6 7.0 58 112-193 69-127 (216)
257 PRK06245 cofG FO synthase subu 36.0 36 0.00092 15.6 4.6 231 62-314 38-327 (336)
258 PRK01033 imidazole glycerol ph 35.9 36 0.00092 15.6 5.3 179 67-323 29-224 (253)
259 PRK10365 transcriptional regul 35.8 36 0.00092 15.6 3.7 12 113-124 67-78 (441)
260 pfam09043 Lys-AminoMut_A D-Lys 35.8 29 0.00075 16.2 2.3 27 143-175 152-178 (509)
261 PTZ00126 tyrosyl-tRNA syntheta 35.7 36 0.00093 15.6 2.9 122 178-315 233-372 (399)
262 PRK06025 acetyl-CoA acetyltran 35.6 7.8 0.0002 20.1 -0.6 44 163-209 301-346 (417)
263 PRK07108 acetyl-CoA acetyltran 35.5 8.6 0.00022 19.8 -0.4 45 163-210 276-322 (392)
264 cd00739 DHPS DHPS subgroup of 35.4 37 0.00094 15.5 8.4 220 61-335 17-254 (257)
265 TIGR01768 GGGP-family geranylg 35.4 26 0.00068 16.5 2.0 161 61-259 35-223 (242)
266 TIGR02127 pyrF_sub2 orotidine 35.3 37 0.00094 15.5 4.2 212 56-294 24-274 (306)
267 cd00751 thiolase Thiolase are 35.3 5.5 0.00014 21.1 -1.5 69 24-92 28-112 (386)
268 TIGR00128 fabD malonyl CoA-acy 35.1 23 0.00058 16.9 1.7 27 278-307 85-112 (295)
269 pfam04476 DUF556 Protein of un 35.0 37 0.00095 15.5 5.9 41 71-123 10-51 (235)
270 pfam02979 NHase_alpha Nitrile 34.9 21 0.00054 17.1 1.5 80 180-260 7-86 (189)
271 pfam09447 Cnl2_NKP2 Cnl2/NKP2 34.8 9.4 0.00024 19.5 -0.3 30 5-34 18-47 (67)
272 PRK03705 glycogen debranching 34.8 38 0.00096 15.5 6.9 92 40-134 152-266 (658)
273 PRK09051 beta-ketothiolase; Pr 34.4 4 0.0001 22.0 -2.3 21 175-195 287-307 (394)
274 PRK13359 beta-ketoadipyl CoA t 34.4 7.6 0.00019 20.2 -0.9 138 59-210 173-328 (400)
275 cd06346 PBP1_ABC_ligand_bindin 34.2 38 0.00098 15.4 5.5 31 166-197 189-219 (312)
276 PRK02610 histidinol-phosphate 34.2 38 0.00098 15.4 5.4 107 56-178 140-249 (369)
277 TIGR01064 pyruv_kin pyruvate k 34.0 39 0.00099 15.4 3.8 37 166-202 205-242 (513)
278 TIGR01037 pyrD_sub1_fam dihydr 33.9 39 0.00099 15.4 5.0 79 94-203 133-213 (308)
279 COG3581 Uncharacterized protei 33.9 37 0.00093 15.6 2.6 37 183-219 90-135 (420)
280 PRK05211 consensus 33.8 39 0.00099 15.4 5.2 201 67-336 20-241 (248)
281 PRK10651 transcriptional regul 33.8 39 0.00099 15.4 4.7 77 112-195 43-129 (216)
282 COG0138 PurH AICAR transformyl 33.6 16 0.0004 18.1 0.6 192 67-283 77-303 (515)
283 PRK00035 hemH ferrochelatase; 33.6 31 0.00079 16.0 2.1 39 63-101 99-137 (325)
284 KOG3670 consensus 33.3 27 0.0007 16.4 1.8 70 59-128 162-237 (397)
285 CHL00040 rbcL ribulose-1,5-bis 33.3 40 0.001 15.3 8.2 146 152-325 179-329 (477)
286 PRK09856 fructoselysine 3-epim 33.0 40 0.001 15.3 8.2 217 61-325 9-246 (276)
287 PRK11572 copper homeostasis pr 32.9 40 0.001 15.3 4.1 126 42-198 52-195 (248)
288 PRK09989 hypothetical protein; 32.8 40 0.001 15.3 4.3 18 70-87 17-34 (258)
289 pfam03932 CutC CutC family. Co 32.5 41 0.001 15.2 4.3 126 42-195 51-193 (202)
290 PRK07124 consensus 32.4 6.1 0.00016 20.8 -1.6 69 24-93 32-117 (402)
291 cd00423 Pterin_binding Pterin 32.0 42 0.0011 15.2 9.7 221 61-335 17-255 (258)
292 PRK06633 acetyl-CoA acetyltran 32.0 2.4 6.1E-05 23.5 -3.7 44 163-209 276-321 (392)
293 pfam09505 Dimeth_Pyl Dimethyla 31.7 13 0.00034 18.5 -0.0 138 28-175 129-285 (466)
294 TIGR02510 NrdE-prime ribonucle 31.5 31 0.00078 16.1 1.8 69 201-273 1-69 (560)
295 TIGR01463 mtaA_cmuA methyltran 31.5 42 0.0011 15.1 3.3 74 108-182 126-217 (350)
296 PRK00413 thrS threonyl-tRNA sy 31.4 23 0.00059 16.9 1.2 194 67-276 226-527 (639)
297 TIGR03571 lucif_BA3436 lucifer 31.3 43 0.0011 15.1 6.3 234 58-326 15-276 (298)
298 KOG4076 consensus 31.3 21 0.00053 17.2 0.9 39 256-300 41-79 (121)
299 cd04412 NDPk7B Nucleoside diph 31.0 34 0.00087 15.8 2.0 90 172-307 6-97 (134)
300 cd07577 Ph0642_like Pyrococcus 30.7 44 0.0011 15.0 2.8 19 160-178 148-167 (259)
301 TIGR01595 cas_CT1132 CRISPR-as 30.6 44 0.0011 15.0 3.6 170 122-315 34-225 (310)
302 cd06568 GH20_SpHex_like A subg 30.6 44 0.0011 15.0 8.0 45 44-88 37-95 (329)
303 COG5573 Predicted nucleic-acid 30.6 29 0.00074 16.2 1.6 24 161-184 105-128 (142)
304 PRK07695 transcriptional regul 30.5 44 0.0011 15.0 5.0 58 246-323 108-175 (202)
305 PRK11866 2-oxoacid ferredoxin 30.4 44 0.0011 15.0 3.8 179 54-247 13-238 (286)
306 cd00564 TMP_TenI Thiamine mono 30.4 44 0.0011 15.0 7.9 59 246-324 108-177 (196)
307 cd00953 KDG_aldolase KDG (2-ke 30.3 44 0.0011 15.0 5.7 167 64-291 16-186 (279)
308 cd02071 MM_CoA_mut_B12_BD meth 30.3 44 0.0011 15.0 5.0 48 152-202 36-86 (122)
309 pfam01791 DeoC DeoC/LacD famil 30.2 44 0.0011 15.0 8.2 194 66-330 17-228 (231)
310 PRK10537 voltage-gated potassi 30.0 39 0.001 15.3 2.2 19 308-326 303-321 (356)
311 pfam06110 DUF953 Eukaryotic pr 30.0 45 0.0011 15.0 6.6 67 65-138 3-74 (119)
312 PRK11858 aksA trans-homoaconit 29.7 45 0.0012 14.9 7.0 35 284-318 318-352 (378)
313 COG0276 HemH Protoheme ferro-l 29.7 45 0.0012 14.9 2.9 61 63-128 97-157 (320)
314 PRK06267 hypothetical protein; 29.6 45 0.0012 14.9 6.3 104 60-201 58-174 (324)
315 PRK00484 lysS lysyl-tRNA synth 29.6 11 0.00029 19.0 -0.7 147 77-267 100-273 (491)
316 cd06544 GH18_narbonin Narbonin 29.6 42 0.0011 15.2 2.2 183 100-318 47-240 (253)
317 KOG1885 consensus 29.0 32 0.00082 15.9 1.6 69 126-215 185-264 (560)
318 PRK02534 4-diphosphocytidyl-2- 28.9 31 0.0008 16.0 1.5 60 261-325 233-298 (308)
319 PRK12820 bifunctional aspartyl 28.9 31 0.0008 16.0 1.5 81 182-267 162-258 (706)
320 COG0173 AspS Aspartyl-tRNA syn 28.8 33 0.00083 15.9 1.6 23 183-205 148-172 (585)
321 COG1891 Uncharacterized protei 28.8 47 0.0012 14.8 5.2 182 72-325 11-208 (235)
322 KOG2775 consensus 28.6 47 0.0012 14.8 2.6 128 76-226 126-267 (397)
323 PRK02227 hypothetical protein; 28.4 48 0.0012 14.8 6.7 12 72-83 11-22 (239)
324 PRK11613 folP dihydropteroate 28.3 48 0.0012 14.8 10.1 213 65-334 35-266 (282)
325 pfam01129 ART NAD:arginine ADP 28.3 19 0.00048 17.5 0.3 36 197-237 66-101 (222)
326 cd06562 GH20_HexA_HexB-like Be 28.2 48 0.0012 14.8 7.2 214 23-268 17-256 (348)
327 cd01421 IMPCH Inosine monophos 28.0 32 0.00081 16.0 1.4 59 269-334 128-187 (187)
328 TIGR02783 TrbL_P P-type conjug 28.0 37 0.00095 15.5 1.8 58 153-210 88-155 (351)
329 pfam00933 Glyco_hydro_3 Glycos 27.9 30 0.00076 16.2 1.3 33 74-107 55-89 (225)
330 cd04735 OYE_like_4_FMN Old yel 27.9 49 0.0012 14.7 8.6 24 152-175 140-163 (353)
331 pfam07302 AroM AroM protein. T 27.8 49 0.0012 14.7 4.9 42 240-281 164-206 (221)
332 TIGR01362 KDO8P_synth 3-deoxy- 27.8 49 0.0012 14.7 5.4 117 42-179 1-134 (279)
333 pfam06850 PHB_depo_C PHB de-po 27.7 32 0.00083 15.9 1.4 37 256-292 93-129 (203)
334 pfam03740 PdxJ Pyridoxal phosp 27.6 49 0.0013 14.7 3.6 47 41-88 83-130 (239)
335 PRK00476 aspS aspartyl-tRNA sy 27.6 9.3 0.00024 19.6 -1.4 80 182-266 148-243 (587)
336 PTZ00196 60S ribosomal protein 27.6 39 0.00099 15.4 1.8 32 3-34 19-51 (104)
337 PRK07851 acetyl-CoA acetyltran 27.5 8 0.0002 20.0 -1.7 141 58-211 181-335 (405)
338 PRK10430 DNA-binding transcrip 27.2 50 0.0013 14.6 8.7 42 261-302 60-102 (239)
339 KOG1349 consensus 27.0 43 0.0011 15.1 2.0 50 185-236 170-223 (309)
340 pfam06418 CTP_synth_N CTP synt 26.9 51 0.0013 14.6 5.8 141 107-289 16-185 (275)
341 pfam02803 Thiolase_C Thiolase, 26.9 37 0.00095 15.5 1.6 45 165-212 10-56 (123)
342 cd00465 URO-D_CIMS_like The UR 26.7 51 0.0013 14.6 5.5 164 49-216 26-217 (306)
343 cd06408 PB1_NoxR The PB1 domai 26.6 51 0.0013 14.6 2.7 60 251-314 10-70 (86)
344 PRK09243 nicotinate phosphorib 26.5 51 0.0013 14.6 2.3 27 176-202 265-291 (466)
345 PRK06689 consensus 26.5 3.2 8.3E-05 22.7 -3.9 139 61-210 168-321 (391)
346 PRK08947 fadA 3-ketoacyl-CoA t 26.5 4.4 0.00011 21.8 -3.2 70 24-93 33-120 (387)
347 cd00777 AspRS_core Asp tRNA sy 26.4 42 0.0011 15.2 1.8 15 74-88 61-75 (280)
348 TIGR00303 TIGR00303 conserved 26.3 11 0.00027 19.2 -1.3 13 257-269 95-107 (350)
349 pfam01680 SOR_SNZ SOR/SNZ fami 26.2 33 0.00085 15.8 1.3 63 225-294 111-173 (209)
350 PRK08131 acetyl-CoA acetyltran 26.1 17 0.00043 17.8 -0.2 45 163-210 282-328 (401)
351 PRK06462 asparagine synthetase 26.0 43 0.0011 15.1 1.8 15 74-88 89-103 (332)
352 TIGR00343 TIGR00343 pyridoxine 26.0 42 0.0011 15.2 1.7 104 224-329 105-213 (298)
353 smart00642 Aamy Alpha-amylase 25.9 53 0.0013 14.5 7.4 76 59-137 3-97 (166)
354 COG0157 NadC Nicotinate-nucleo 25.9 53 0.0013 14.5 2.9 102 210-334 169-271 (280)
355 pfam12114 Period_C Period prot 25.8 33 0.00085 15.8 1.2 17 230-246 104-120 (190)
356 pfam01255 Prenyltransf Putativ 25.8 52 0.0013 14.5 2.2 56 64-123 21-76 (222)
357 TIGR00649 MG423 conserved hypo 25.8 40 0.001 15.3 1.6 125 104-297 298-429 (593)
358 PRK13759 arylsulfatase; Provis 25.7 36 0.00092 15.6 1.4 26 176-201 262-288 (474)
359 PTZ00292 ribokinase; Provision 25.6 53 0.0014 14.4 4.6 37 159-195 55-92 (328)
360 COG1190 LysU Lysyl-tRNA synthe 25.5 51 0.0013 14.6 2.1 66 129-215 143-219 (502)
361 PRK06366 acetyl-CoA acetyltran 25.4 48 0.0012 14.8 2.0 36 175-210 280-317 (388)
362 PRK00748 1-(5-phosphoribosyl)- 25.3 54 0.0014 14.4 7.6 183 69-323 30-219 (241)
363 cd00537 MTHFR Methylenetetrahy 25.3 54 0.0014 14.4 10.4 133 55-203 61-198 (274)
364 PRK08599 coproporphyrinogen II 25.0 55 0.0014 14.4 3.8 23 183-205 218-240 (377)
365 TIGR01949 AroFGH_arch predicte 24.8 55 0.0014 14.4 2.4 172 39-282 18-198 (259)
366 TIGR00735 hisF imidazoleglycer 24.7 55 0.0014 14.3 3.7 74 235-322 37-126 (312)
367 PRK05269 transaldolase B; Prov 24.7 55 0.0014 14.3 3.6 145 99-275 98-255 (320)
368 PRK12484 nicotinate phosphorib 24.5 56 0.0014 14.3 2.4 21 182-202 264-284 (443)
369 PRK06252 methylcobalamin:coenz 24.4 56 0.0014 14.3 11.7 178 108-324 121-311 (339)
370 cd06570 GH20_chitobiase-like_1 24.2 57 0.0014 14.3 7.9 203 42-280 35-262 (311)
371 TIGR02082 metH methionine synt 24.1 54 0.0014 14.4 2.0 222 54-326 227-482 (1265)
372 PRK08898 coproporphyrinogen II 24.0 57 0.0015 14.3 3.7 21 184-204 235-255 (393)
373 PRK09050 beta-ketoadipyl CoA t 23.9 4.1 0.0001 22.0 -3.8 136 61-210 175-329 (401)
374 COG3246 Uncharacterized conser 23.7 58 0.0015 14.2 7.9 80 42-128 3-82 (298)
375 TIGR01830 3oxo_ACP_reduc 3-oxo 23.7 58 0.0015 14.2 3.8 52 63-128 29-80 (238)
376 TIGR03455 HisG_C-term ATP phos 23.7 58 0.0015 14.2 3.0 53 263-326 38-95 (100)
377 PRK10499 N,N'-diacetylchitobio 23.6 58 0.0015 14.2 7.5 60 249-320 46-106 (106)
378 PRK00694 4-hydroxy-3-methylbut 23.5 58 0.0015 14.2 6.2 70 49-134 26-99 (606)
379 pfam01729 QRPTase_C Quinolinat 23.3 59 0.0015 14.2 4.7 92 211-325 62-155 (169)
380 TIGR02319 CPEP_Pphonmut carbox 23.1 31 0.0008 16.0 0.7 208 42-320 37-257 (294)
381 PRK02983 lysS lysyl-tRNA synth 23.1 59 0.0015 14.1 2.1 22 182-203 782-805 (1099)
382 cd07025 Peptidase_S66 LD-Carbo 23.0 60 0.0015 14.1 2.7 18 264-281 244-261 (282)
383 PRK05086 malate dehydrogenase; 23.0 60 0.0015 14.1 2.4 42 81-123 69-111 (312)
384 PRK07328 histidinol-phosphatas 22.9 60 0.0015 14.1 5.1 69 64-132 13-86 (268)
385 PRK00230 orotidine 5'-phosphat 22.8 60 0.0015 14.1 10.7 113 112-263 97-211 (231)
386 pfam00332 Glyco_hydro_17 Glyco 22.6 53 0.0014 14.5 1.7 31 173-203 203-233 (310)
387 COG0059 IlvC Ketol-acid reduct 22.5 61 0.0016 14.1 3.1 42 247-288 117-161 (338)
388 TIGR03675 arCOG00543 arCOG0178 22.3 61 0.0016 14.0 2.4 39 152-191 385-423 (630)
389 PRK06294 coproporphyrinogen II 22.2 62 0.0016 14.0 4.0 115 182-303 220-347 (374)
390 cd03323 D-glucarate_dehydratas 22.2 62 0.0016 14.0 5.7 52 66-130 168-220 (395)
391 cd04747 OYE_like_5_FMN Old yel 22.0 62 0.0016 14.0 9.1 33 96-128 183-216 (361)
392 PRK10674 deoxyribodipyrimidine 22.0 62 0.0016 14.0 3.3 72 11-87 5-76 (472)
393 cd07568 ML_beta-AS_like mammal 21.9 63 0.0016 14.0 3.2 64 109-175 28-96 (287)
394 pfam05315 ICEA ICEA Protein. T 21.8 63 0.0016 14.0 2.6 120 102-241 75-202 (230)
395 COG0686 Ald Alanine dehydrogen 21.8 52 0.0013 14.5 1.6 16 230-245 216-231 (371)
396 PRK12928 lipoyl synthase; Prov 21.8 63 0.0016 14.0 6.0 173 65-297 87-268 (290)
397 PRK09057 coproporphyrinogen II 21.6 63 0.0016 13.9 3.4 52 71-126 105-159 (381)
398 COG0648 Nfo Endonuclease IV [D 21.5 64 0.0016 13.9 5.2 41 43-90 69-109 (280)
399 COG1861 SpsF Spore coat polysa 21.4 64 0.0016 13.9 3.8 52 106-175 76-127 (241)
400 PRK05481 lipoyl synthase; Prov 21.4 64 0.0016 13.9 5.7 196 65-332 79-284 (289)
401 pfam06866 DUF1256 Protein of u 21.3 64 0.0016 13.9 5.0 77 43-141 28-106 (164)
402 TIGR00222 panB 3-methyl-2-oxob 21.3 64 0.0016 13.9 4.7 61 113-175 122-183 (267)
403 pfam00863 Peptidase_C4 Peptida 21.2 33 0.00083 15.9 0.4 18 49-66 50-67 (233)
404 cd02812 PcrB_like PcrB_like pr 21.2 65 0.0016 13.9 5.1 41 266-325 163-204 (219)
405 pfam00762 Ferrochelatase Ferro 21.1 65 0.0017 13.9 2.1 39 63-101 93-131 (312)
406 cd03315 MLE_like Muconate lact 21.1 65 0.0017 13.9 5.5 166 64-302 83-260 (265)
407 TIGR02317 prpB methylisocitrat 21.0 65 0.0016 13.9 1.9 86 69-176 90-182 (287)
408 PRK09935 transcriptional regul 21.0 65 0.0017 13.9 6.9 34 163-196 93-127 (210)
409 PRK05790 acetyl-CoA acetyltran 21.0 7.8 0.0002 20.1 -2.8 69 24-93 32-117 (393)
410 PRK09483 response regulator; P 20.9 66 0.0017 13.8 9.1 113 165-305 93-213 (216)
411 cd02801 DUS_like_FMN Dihydrour 20.7 66 0.0017 13.8 7.7 95 66-184 65-162 (231)
412 COG2204 AtoC Response regulato 20.6 66 0.0017 13.8 4.4 13 112-124 65-77 (464)
413 PRK07985 oxidoreductase; Provi 20.6 66 0.0017 13.8 3.6 18 109-126 114-131 (294)
414 TIGR03288 CoB_CoM_SS_B CoB--Co 20.6 67 0.0017 13.8 4.2 19 306-324 210-228 (290)
415 TIGR01838 PHA_synth_I poly(R)- 20.5 31 0.00078 16.1 0.2 22 35-56 348-369 (541)
416 cd03317 NAAAR N-acylamino acid 20.4 67 0.0017 13.8 6.1 50 65-130 136-185 (354)
417 cd04730 NPD_like 2-Nitropropan 20.4 67 0.0017 13.8 5.0 45 234-282 107-161 (236)
418 TIGR03417 chol_sulfatase choli 20.1 51 0.0013 14.6 1.2 25 177-201 260-285 (500)
419 pfam03431 RNA_replicase_B RNA 20.1 68 0.0017 13.7 5.0 70 150-231 300-385 (539)
420 pfam02057 Glyco_hydro_59 Glyco 20.1 68 0.0017 13.7 2.0 95 112-218 116-220 (669)
No 1
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=100.00 E-value=0 Score=1126.76 Aligned_cols=322 Identities=53% Similarity=0.876 Sum_probs=320.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 88858563128988999863477888773311666758988110488878632889999999999998889367633025
Q gi|255764463|r 12 CCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNI 91 (337)
Q Consensus 12 ~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I 91 (337)
||+.||||||+++|+|+||+||+|+++|||||+||+||++.++||+||||++|||+|.|++++++++++||++|+|||+|
T Consensus 1 fp~~R~RRlR~~~~iR~lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~SMPGi~R~sid~l~~~v~~~~~lGI~av~LFpvi 80 (322)
T pfam00490 1 FPITRPRRLRRSPALRRLVRETRLSPSDLIYPLFVTEGEDEKEPIPSMPGVYRLSVDLLVKEVEEAVELGIPAVILFGVI 80 (322)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEECCCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99987765679878999985278888997510699439998403689998514489999999999997799879984458
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 63345544542157653799999999973014479861332710011431001365446289999999999999962897
Q gi|255764463|r 92 PMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGAD 171 (337)
Q Consensus 92 ~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaD 171 (337)
++++||+.|++|||+||++|||||+||++||||+|||||||||||+||||||+++|+||||+|+++|+|||++||+||||
T Consensus 81 ~~~~Kd~~gseA~n~~~lv~raIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~g~IdND~Tl~~L~k~Al~~A~AGaD 160 (322)
T pfam00490 81 DPELKDEDGSEAYNPDGLVQRAIRAIKEAFPDLVVITDVCLCEYTSHGHCGILEDGEVDNDETLELLAKQALSHAEAGAD 160 (322)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCC
T ss_conf 60238955361248742899999999986897067510003666688771237599580599999999999999975998
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35246676779999999998778857730033666435430101675310244677774431572114788988887664
Q gi|255764463|r 172 IIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 (337)
Q Consensus 172 ivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~ 251 (337)
+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+| ||||||||||+|++||+||+++|++
T Consensus 161 ivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKyaS~fYGPFRdA~~S~~~~-gdrktYQmd~~n~~eAl~e~~~D~~ 239 (322)
T pfam00490 161 IVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPAF-GDRKTYQMDPANRREALREVALDIE 239 (322)
T ss_pred CCCCHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 204031256789999999997799987264306766340120478886157656-8803011699877999999985576
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 08987995531145899999996249989999346189999999988897889999999999977269999820189999
Q gi|255764463|r 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAA 331 (337)
Q Consensus 252 EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a 331 (337)
||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|+||||||||+||||||+++|
T Consensus 240 EGAD~lMVKP~~~YLDii~~~k~~~~~P~~aYqVSGEYamik~aa~~g~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 319 (322)
T pfam00490 240 EGADMVMVKPALPYLDIIRRVKDRFDLPVAAYQVSGEYAMIKAAAQNGWLDEKRVVLESLLSIKRAGADLIITYFAKEAA 319 (322)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf 09986986264168999999998349987999766999999999986997688899999999886289889860499998
Q ss_pred HHH
Q ss_conf 998
Q gi|255764463|r 332 RIL 334 (337)
Q Consensus 332 ~~L 334 (337)
+||
T Consensus 320 ~~L 322 (322)
T pfam00490 320 RWL 322 (322)
T ss_pred HHC
T ss_conf 339
No 2
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=0 Score=1122.24 Aligned_cols=320 Identities=57% Similarity=0.986 Sum_probs=318.0
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 58563128988999863477888773311666758988110488878632889999999999998889367633025633
Q gi|255764463|r 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMD 94 (337)
Q Consensus 15 ~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~ 94 (337)
+||||||+|+++|+||+||+|+++|||||+||+||.+.++||+||||+||||+|.|++++++++++||++|+|||+++++
T Consensus 1 tR~RRlR~~~~iR~Lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGi~r~sid~l~~~v~~~~~lGI~av~LFgvi~~~ 80 (320)
T cd04823 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTPPE 80 (320)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEEEECCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEEECCHH
T ss_conf 99863579878999986179888997632599428998325689998606589999999999998899789995466555
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 45544542157653799999999973014479861332710011431001365446289999999999999962897352
Q gi|255764463|r 95 LRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA 174 (337)
Q Consensus 95 ~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337)
+||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+++|+||||+|++.|+|||++||+||||+||
T Consensus 81 ~KD~~Gs~A~n~~g~v~rair~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~~~idND~Tl~~L~k~A~~~A~AGaDiVA 160 (320)
T cd04823 81 LKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVA 160 (320)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 33788870058655899999999997898099975024667788842131189675589999999999999964999326
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 46676779999999998778857730033666435430101675310244677774431572114788988887664089
Q gi|255764463|r 175 PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 (337)
Q Consensus 175 PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA 254 (337)
|||||||||++||++||++||++|+|||||+||||+||||||||++|+|+| |||+||||||+|++||+||+++|++|||
T Consensus 161 PSdMMDGrV~aIR~~Ld~~gf~~~~ImSYsaKyaS~fYGPFRdA~~S~p~~-gdrktYQmd~~n~~eA~~e~~~D~~EGA 239 (320)
T cd04823 161 PSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRK-GDKKTYQMDPANSREALREVALDIAEGA 239 (320)
T ss_pred CHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 343105589999999997799874671245666452023378885157767-8802033799977999999985275199
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 87995531145899999996249989999346189999999988897889999999999977269999820189999998
Q gi|255764463|r 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 255 D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
|||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+||
T Consensus 240 D~lMVKPa~~YLDii~~~k~~~~~Pv~aYqVSGEYaMikaaa~~G~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~~a~~L 319 (320)
T cd04823 240 DMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAAEWL 319 (320)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf 87996276218999999997769988999774999999999987997578699999999986599889870399999864
Q ss_pred H
Q ss_conf 5
Q gi|255764463|r 335 T 335 (337)
Q Consensus 335 ~ 335 (337)
+
T Consensus 320 k 320 (320)
T cd04823 320 R 320 (320)
T ss_pred C
T ss_conf 9
No 3
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=0 Score=1115.70 Aligned_cols=321 Identities=54% Similarity=0.909 Sum_probs=316.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 57888585631289889998634778887733116667589881104888786328899999999999988893676330
Q gi|255764463|r 10 KICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP 89 (337)
Q Consensus 10 ~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp 89 (337)
..||++||||||+|+|+|+||+||+|+++|||||+||+||.+.++||+||||++|||+|.|++++++++++||++|+|||
T Consensus 1 ~~fP~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eG~~~~~~I~SMPGi~R~Sid~l~~eve~~~~lGI~av~LFp 80 (321)
T PRK09283 1 MMFPFTRPRRLRKTAALRRLVRETSLTVNDLIYPLFVVEGENEKEEIPSMPGVYRLSIDLLLKEAEEAVDLGIPAVALFG 80 (321)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCEEEEEEECCCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 97998776546798789999850788889976115993189984136899985042899999999999987999899737
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 25633455445421576537999999999730144798613327100114310013654462899999999999999628
Q gi|255764463|r 90 NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG 169 (337)
Q Consensus 90 ~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG 169 (337)
+ +++||+.|++|||+||++|||||.||++||||+|||||||||||+||||||+ |+||||+|++.|+|||++||+||
T Consensus 81 v--~~~Kd~~gseA~n~dglv~rAIr~iK~~fpdl~vi~DvcLc~YT~hGHcGi~--~~i~ND~Tl~~L~k~Al~~A~AG 156 (321)
T PRK09283 81 V--PELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGIL--GYVDNDETLEVLAKQALSQAEAG 156 (321)
T ss_pred C--CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8--4346777561358641899999999986898289730213545578775515--85530999999999999999749
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 97352466767799999999987788577300336664354301016753102446777744315721147889888876
Q gi|255764463|r 170 ADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASID 249 (337)
Q Consensus 170 aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D 249 (337)
||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|.| |||+||||||+|++||+||+++|
T Consensus 157 aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImSYsaKyaS~fYGPFRdA~~S~~~~-gdr~tYQmd~~n~~eA~re~~~D 235 (321)
T PRK09283 157 ADIVAPSDMMDGRVGAIREALDAAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPQF-GDRKTYQMDPANRREALREVELD 235 (321)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCHHHHHHHCCCCC-CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 98325142026689999999997799887053236766340120478886167666-87003315988779999999853
Q ss_pred HHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 64089879955311458999999962499899993461899999999888978899999999999772699998201899
Q gi|255764463|r 250 IQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAME 329 (337)
Q Consensus 250 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~ 329 (337)
++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||++
T Consensus 236 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYamik~a~~~G~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~ 315 (321)
T PRK09283 236 IEEGADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLLSFKRAGADGILTYFAKD 315 (321)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 76099879862641689999999974599989997659999999999869975888999999999863998898704999
Q ss_pred HHHHHH
Q ss_conf 999985
Q gi|255764463|r 330 AARILT 335 (337)
Q Consensus 330 ~a~~L~ 335 (337)
+|+||+
T Consensus 316 ~a~~L~ 321 (321)
T PRK09283 316 AARWLK 321 (321)
T ss_pred HHHHHC
T ss_conf 998649
No 4
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=1106.11 Aligned_cols=328 Identities=52% Similarity=0.829 Sum_probs=322.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 55788858563128988999863477888773311666758988110488878632889999999999998889367633
Q gi|255764463|r 9 HKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIF 88 (337)
Q Consensus 9 ~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LF 88 (337)
...+|++||||||+++|+|+||+||+|+++|||||+||.||++.++||+|||||||||+|.|+++++++.++||++|+||
T Consensus 2 ~~~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LF 81 (330)
T COG0113 2 MPTFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILF 81 (330)
T ss_pred CCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 86543244342127888999988537877781576899548997641678998302069999999999996699779980
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 02563345544542157653799999999973014479861332710011431001365-44628999999999999996
Q gi|255764463|r 89 PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDG-EIVNDETIELISHAAVIQAD 167 (337)
Q Consensus 89 p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g-~IdND~Tl~~L~k~Al~~A~ 167 (337)
|++++++||+.||+||||+|+||||||.||+.|||++|||||||||||+||||||++++ .|+||+|+++|+|||++||+
T Consensus 82 gvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~Ae 161 (330)
T COG0113 82 GVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAE 161 (330)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 89863236743320038778099999999986897299852103677688866115589616164789999999999997
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28973524667677999999999877885773003366643543010167531024467777443157211478898888
Q gi|255764463|r 168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREAS 247 (337)
Q Consensus 168 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~ 247 (337)
||||||||||||||||++||++||++||.||+|||||+||||+||||||||++|+|+| ||||||||||+|++||+||++
T Consensus 162 AGAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~-gdrktYQmDpaN~~EAlrE~~ 240 (330)
T COG0113 162 AGADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKF-GDRKTYQMDPANRREALREIE 240 (330)
T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHH
T ss_conf 0797552533335339999999987698764043206777662346367774034435-896300469867899999998
Q ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 76640898799553114589999999624998999934618999999998889788999999999997726999982018
Q gi|255764463|r 248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA 327 (337)
Q Consensus 248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A 327 (337)
+|++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|||+||||||||+||||||
T Consensus 241 lD~~EGAD~lMVKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA 320 (330)
T COG0113 241 LDIEEGADILMVKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFA 320 (330)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 66870796899768815999999998706997589854548999999998588225889999999998648888976328
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998509
Q gi|255764463|r 328 MEAARILTHS 337 (337)
Q Consensus 328 ~~~a~~L~~~ 337 (337)
+|+|+||++.
T Consensus 321 ~e~a~~L~~~ 330 (330)
T COG0113 321 KEVAEWLKEG 330 (330)
T ss_pred HHHHHHHHCC
T ss_conf 9999987449
No 5
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=0 Score=1105.83 Aligned_cols=322 Identities=41% Similarity=0.647 Sum_probs=317.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 65578885856312898899986347788877331166675898811048887863288999999999999888936763
Q gi|255764463|r 8 SHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAI 87 (337)
Q Consensus 8 s~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~L 87 (337)
....||++||||||+++|+|+||+||+|+++||||||||+||.+.++||+||||+||||+|.|++++++++++||++|+|
T Consensus 2 ~~~~fP~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~Eg~~~~epI~SMPGi~R~SiD~L~~eie~~~~lGI~av~L 81 (323)
T PRK13384 2 MSNTFPLRRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMP 81 (323)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 87889987776568987899997407888899663249812899733579999952479999999999999789968983
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 30256334554454215765379999999997301447986133271001143100136544628999999999999996
Q gi|255764463|r 88 FPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQAD 167 (337)
Q Consensus 88 Fp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~ 167 (337)
||+ | ++||+.|++|||+||++|||||.||+.||||+|||||||||||+||||||+++|+||||+|++.|+||||+||+
T Consensus 82 Fgi-~-~~Kd~~gs~a~~~~~lv~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGi~~~~~IdND~Tl~~L~k~Al~~A~ 159 (323)
T PRK13384 82 FGI-S-HHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAK 159 (323)
T ss_pred CCC-C-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 699-9-88997656566876579999999998679829997502466668886662546615459999999999999997
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28973524667677999999999877885773003366643543010167531024467777443157211478898888
Q gi|255764463|r 168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREAS 247 (337)
Q Consensus 168 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~ 247 (337)
||||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+ |||+||||||+|++||+||++
T Consensus 160 AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKfaS~fYGPFRdA~~s~p~--gdr~sYQmd~~n~~eA~~e~~ 237 (323)
T PRK13384 160 AGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELS--GDRKSYQLDYANGRQALLEAL 237 (323)
T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCHHHHHHCCCCC--CCCCCCCCCCCCHHHHHHHHH
T ss_conf 499842603302668999999999779987467336666645303267898436767--897400369988799999998
Q ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 76640898799553114589999999624998999934618999999998889788999999999997726999982018
Q gi|255764463|r 248 IDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA 327 (337)
Q Consensus 248 ~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A 327 (337)
+|++||||||||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|+||||||||+||||||
T Consensus 238 ~D~~EGAD~lmVKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamik~aa~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A 317 (323)
T PRK13384 238 LDEAEGADILMVKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYA 317 (323)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 54750999899737723899999999706998899975399999999998699757879999999998659989977066
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|255764463|r 328 MEAARI 333 (337)
Q Consensus 328 ~~~a~~ 333 (337)
+|+|+|
T Consensus 318 ~~~a~w 323 (323)
T PRK13384 318 KQYAQW 323 (323)
T ss_pred HHHHCC
T ss_conf 877459
No 6
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=0 Score=1092.21 Aligned_cols=314 Identities=52% Similarity=0.850 Sum_probs=311.0
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 63128988999863477888773311666758988110488878632889999999999998889367633025633455
Q gi|255764463|r 18 RRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN 97 (337)
Q Consensus 18 RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd 97 (337)
||||+++|+|+||+||+|+++|||||+||+||++.++||+||||++|||+|.|++++++++++||++|+|||+ | ++||
T Consensus 1 RRlR~~~~iR~Lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPGi~R~sid~l~~~v~~~~~lGI~av~LFpv-p-~~Kd 78 (314)
T cd00384 1 RRLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGI-P-EHKD 78 (314)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHCEEEEEEECCCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEECC-C-CCCC
T ss_conf 9888877899998607888899762069945999840368999850328999999999999879988996389-8-8899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 44542157653799999999973014479861332710011431001365446289999999999999962897352466
Q gi|255764463|r 98 NTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSE 177 (337)
Q Consensus 98 ~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd 177 (337)
+.|++|||+||++|||||+||++||||+|||||||||||+||||||+++|+||||+|++.|+|||++||+||||+|||||
T Consensus 79 ~~gseA~n~~glv~raIr~iK~~fpdl~vi~DVcL~pYT~hGHcGil~~g~IdND~Tv~~L~~~Al~~A~AGaDivAPSd 158 (314)
T cd00384 79 EIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSD 158 (314)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77553469865899999999997798689843033556687771447599582499999999999999974998145302
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 76779999999998778857730033666435430101675310244677774431572114788988887664089879
Q gi|255764463|r 178 MMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADML 257 (337)
Q Consensus 178 MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~l 257 (337)
||||||++||++||++||.+|+|||||+||||+||||||||++|+|+| |||+||||||+|++||+||+++|++||||||
T Consensus 159 MMDGrV~aIR~~Ld~~gf~~v~ImSYsaKyaS~fYGPFRdA~~S~~~~-gdrktYQmd~~n~~eAl~e~~~D~~EGAD~l 237 (314)
T cd00384 159 MMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSF-GDRKTYQMDPANRREALREVELDIEEGADIL 237 (314)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCHHHHHHHCCCCC-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 557789999999997799988053227776340120478886157656-8844443599877999999985476199869
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 95531145899999996249989999346189999999988897889999999999977269999820189999998
Q gi|255764463|r 258 LVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 258 MVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
||||||||||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|+|+||
T Consensus 238 MVKP~~~yLDii~~~k~~~~~P~~aYqVSGEYaMik~aa~~g~~d~~~~~~Esl~~~kRAGAd~IiTY~A~~~a~~L 314 (314)
T cd00384 238 MVKPALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAARWL 314 (314)
T ss_pred EECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHC
T ss_conf 85264168999999997059987999765999999999986997578899999999996499999871499998339
No 7
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=0 Score=1071.91 Aligned_cols=312 Identities=38% Similarity=0.627 Sum_probs=305.9
Q ss_pred CCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCC
Q ss_conf 898899986347788877331166675898811048887863288999999999999888936763302563-3455445
Q gi|255764463|r 22 KSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPM-DLRNNTG 100 (337)
Q Consensus 22 ~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~-~~Kd~~G 100 (337)
.|+++|+||+||+|+++|||||+||+||.+.++||+||||+||||+|.|++++++++++||++|+|||++++ .+||+.|
T Consensus 5 ~n~~iR~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~sMPGv~R~sid~l~~~i~~~~~lGI~av~LF~v~~~~~kkd~~g 84 (320)
T cd04824 5 AHPLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSG 84 (320)
T ss_pred CCHHHHHHHHHCCCCHHHCEEEEEEECCCCCCEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCC
T ss_conf 78999999872798889966425992299983137999996344899999999999987999799716676100687344
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 421576537999999999730144798613327100114310013-6544628999999999999996289735246676
Q gi|255764463|r 101 SHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMM 179 (337)
Q Consensus 101 seA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~-~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM 179 (337)
++|||++|++|||||+||++||||+|||||||||||+||||||++ +|+||||+||++|+|||++||+||||||||||||
T Consensus 85 s~a~~~~~lv~rAIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM 164 (320)
T cd04824 85 SAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDMM 164 (320)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEECCHHCC
T ss_conf 50148654999999999987898499954101456687777754779817648999999999999997089833413113
Q ss_pred CCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 779999999998778857-7300336664354301016753102446777744315721147889888876640898799
Q gi|255764463|r 180 DGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL 258 (337)
Q Consensus 180 DGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM 258 (337)
||||++||++||++||++ |+|||||+||||+||||||||++|+|+| ||||||||||+|++||+||+++|++|||||||
T Consensus 165 DGrV~aIR~~LD~~g~~~~v~ImSYsaKyaS~fYGPFRdA~~S~p~~-gdrktYQmd~~n~~eAlre~~~D~~EGAD~lM 243 (320)
T cd04824 165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSF-GDRRCYQLPPGARGLALRAVERDVSEGADMIM 243 (320)
T ss_pred CCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCCC-CCCCEEECCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 46899999999987895556310177776563023278885056457-88754206988578999998643773999799
Q ss_pred ECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 553114589999999624-9989999346189999999988897889999999999977269999820189999998
Q gi|255764463|r 259 VKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 259 VKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
|||||||||||+++|++| ++|++||||||||||||+|+++||+|++++++|+|+||||||||+||||||+|+|+||
T Consensus 244 VKPa~~YLDiI~~~k~~~~~~Pv~aYqVSGEYaMikaaa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~e~a~wL 320 (320)
T cd04824 244 VKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELLDWL 320 (320)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHC
T ss_conf 52762289999999985789988999762899999999987997578899999999996599999871499998449
No 8
>KOG2794 consensus
Probab=100.00 E-value=0 Score=912.83 Aligned_cols=330 Identities=41% Similarity=0.676 Sum_probs=320.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 26655788858563128988999863477888773311666758988110488878632889999999999998889367
Q gi|255764463|r 6 AISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAI 85 (337)
Q Consensus 6 ~is~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av 85 (337)
-|.+++.+++|+||.|.++.+|.|.+||.|++++||||+||+|+++..+||.||||+|||+++.|.++++++++.|+++|
T Consensus 7 l~~~P~~~s~~l~~g~~~p~lR~~q~~~~is~~nliyPlFI~e~~dd~~pI~SmPg~~r~G~~rL~e~l~plv~~Gl~sV 86 (340)
T KOG2794 7 LIDQPLQLSRRLHRGYKHPLLRAWQQETNISPANLIYPLFIHEGEDDFTPIDSMPGIYRLGVNRLKEELAPLVAKGLRSV 86 (340)
T ss_pred HHCCCCCHHHHHHCCCCCHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 00476557778635788878999860487784332356887427655552024775168879999999999997034358
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 63302563345544542157653799999999973014479861332710011431001-36544628999999999999
Q gi|255764463|r 86 AIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL-CDGEIVNDETIELISHAAVI 164 (337)
Q Consensus 86 ~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~ 164 (337)
+|||++++.+||+.|++|+|++|+|.++||.||+.||||+|.|||||||||+|||||++ +||.|.||+|++.|+++|++
T Consensus 87 iLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv~rlaevAv~ 166 (340)
T KOG2794 87 ILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESVHRLAEVAVS 166 (340)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98268885346854322358888477789999875866078753330345578866133366521578889999999999
Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99628973524667677999999999877885773003366643543010167531024467777443157211478898
Q gi|255764463|r 165 QADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIR 244 (337)
Q Consensus 165 ~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~ 244 (337)
||+||||+|||||||||||++||++|+++||.+|.||||||||+|+||||||+|+.|+|+| ||||+|||++..+..|+|
T Consensus 167 yAkAGa~vVapSDmmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~f-gDrkcYQlP~~~R~la~r 245 (340)
T KOG2794 167 YAKAGADVVAPSDMMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKF-GDRKCYQLPANSRGLALR 245 (340)
T ss_pred HHHCCCCEECCHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHHHCCCCC-CCCCEEECCCCHHHHHHH
T ss_conf 8862795536067533349999999988422544777604444101465067775228655-773002179842789999
Q ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 888766408987995531145899999996249-9899993461899999999888978899999999999772699998
Q gi|255764463|r 245 EASIDIQESADMLLVKPGLPYLDVCFRIKEKFG-LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 245 e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~-~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii 323 (337)
..++|+.||||||||||||||||||+.+|+.+. +|+++||||||||||++|+++|.+|++++++|++.+|+|||||+||
T Consensus 246 A~erD~aEGAD~lmVKPg~pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIl 325 (340)
T KOG2794 246 ARERDVAEGADILMVKPGLPYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGMFDLKKVVMESMLGFRRAGADIIL 325 (340)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88755642676688559972899999987438888448988441689999888616210899999999999863885897
Q ss_pred ECHHHHHHHHHHC
Q ss_conf 2018999999850
Q gi|255764463|r 324 TYFAMEAARILTH 336 (337)
Q Consensus 324 tY~A~~~a~~L~~ 336 (337)
||||++++.||.+
T Consensus 326 TYfapq~l~~L~~ 338 (340)
T KOG2794 326 TYFAPQLLTWLCG 338 (340)
T ss_pred EECCHHHHHHHHC
T ss_conf 5306999988633
No 9
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.29 E-value=0.0085 Score=40.13 Aligned_cols=173 Identities=21% Similarity=0.320 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
..+++..++.++++.+-|+- ++=-++| --|+ .|+ ++||++|+.||+..|.+|.=.
T Consensus 12 ~~~l~~A~~ia~e~v~~~~d--iiE~GTP-LIk~---------eG~--~aV~~lr~~fP~~~ivAD~Kt----------- 66 (429)
T PRK07028 12 LLELDRAIEIAKEAVAGGAD--WIEAGTP-LIKS---------EGM--NAIRTLRKNFPDLTIVADMKT----------- 66 (429)
T ss_pred CCCHHHHHHHHHHHHHCCCC--EEEECCH-HHHH---------HHH--HHHHHHHHHCCCCEEEEEEEE-----------
T ss_conf 48889999999987415875--9991768-8886---------418--999999987899869887640-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 13654462899999999999999628973524667677999999999877885773003366643543010167531024
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD 223 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p 223 (337)
++-|. --+-..++||||+|.=+.-.|-. .|+++..+..-....+|.
T Consensus 67 mDaG~-----------~Ea~~A~~AGADivtVlG~a~d~--TI~~aV~aA~k~G~~v~v--------------------- 112 (429)
T PRK07028 67 MDTGA-----------MEVEMAAKAGADVVCILGVADDS--TIADAVRAARKYGVLVMA--------------------- 112 (429)
T ss_pred CCCCH-----------HHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCEEEE---------------------
T ss_conf 45508-----------89999987699889994578836--999999999970988999---------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-------HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf 467777443157211478898888766408987995531-------1458999999962499899993461899999999
Q gi|255764463|r 224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG-------LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAAS 296 (337)
Q Consensus 224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~ 296 (337)
| -+++.|.-+-.+|. .+=|+|++-|--| .+-+++++.++.+++.|+++
T Consensus 113 ----D----lI~v~d~~~ra~el---~~lGvd~I~vH~G~D~Q~~g~~p~~~l~~v~~~~~~~vAV-------------- 167 (429)
T PRK07028 113 ----D----LINVPDPVKRAVEL---EELGVDIINVHVGIDQQMLGKDPLELLKKVSEEVSIPIAA-------------- 167 (429)
T ss_pred ----E----ECCCCCHHHHHHHH---HHCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHCCCEEEE--------------
T ss_conf ----8----55899889999999---9709988999762335531798499999999755971899--------------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 888978899999999999772699998201
Q gi|255764463|r 297 LQGWINKNDAMMESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 297 ~~g~~d~~~~~~E~l~~~kRAGAd~IitY~ 326 (337)
+|-++.+.+ --.-.+|||++|-=.
T Consensus 168 -AGGi~~~t~-----~~~v~~GAdIvIVGg 191 (429)
T PRK07028 168 -AGGLDAETA-----VKAVEAGADIVIVGG 191 (429)
T ss_pred -ECCCCHHHH-----HHHHHCCCCEEEECC
T ss_conf -668787769-----999975998999894
No 10
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=96.17 E-value=0.024 Score=37.03 Aligned_cols=221 Identities=18% Similarity=0.195 Sum_probs=112.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
++=|+-|.++.|.+++.++++.+.|++-|.+-++..++.+- ......+|.||+.+|++.+-+ +.+.-
T Consensus 62 p~~~~ay~lt~eei~~~~~~a~~~G~~Ei~~~gG~~Pel~~----------~~y~e~~r~ik~~~p~~~i~a---~s~~E 128 (343)
T TIGR03551 62 KGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG----------DFYLDILRAVKEEVPGMHIHA---FSPME 128 (343)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH----------HHHHHHHHHHHHHCCCCEEEE---CCHHH
T ss_conf 99986600799999999999997699689982586878888----------899999999987488301022---78999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCC--------EEECCCCC-CCHHHHHHHHHHHCCCCCCCEECHHHH
Q ss_conf 1143100136544628999999999999-9962897--------35246676-779999999998778857730033666
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVI-QADAGAD--------IIAPSEMM-DGRVQEIRKKLDSHGHINVGIMPYVAK 206 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~-~A~AGaD--------ivAPSdMM-DGrV~aIR~~Ld~~g~~~~~ImsYsaK 206 (337)
.+- +.....+...+.+..|.+..+. .-..||- .++|.-+. +.++..+|.+-...=.+.+++|
T Consensus 129 i~~---~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~lGi~ttatml----- 200 (343)
T TIGR03551 129 VYY---GARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIM----- 200 (343)
T ss_pred HHH---HHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-----
T ss_conf 999---998659999999999997587767886513214012414696989999999999999985997202234-----
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CEEEECCC---HHHHH
Q ss_conf 435430101675310244677774431572114788988887664089----------------87995531---14589
Q gi|255764463|r 207 FNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA----------------DMLLVKPG---LPYLD 267 (337)
Q Consensus 207 faS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA----------------D~lMVKPa---~~yLD 267 (337)
|| --.|+. +-...-++||+.+.. --|- .--+++|+ .-+|-
T Consensus 201 -----~G--------------~gEt~e-erv~hL~~lR~lqd~-tggf~~fIp~~f~p~~t~l~~~~~~~~~~~~~e~l~ 259 (343)
T TIGR03551 201 -----YG--------------HVETPE-HWVDHLLILREIQEE-TGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLK 259 (343)
T ss_pred -----EC--------------CCCCHH-HHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
T ss_conf -----27--------------889999-999999999986201-388269981365667880444156678985799999
Q ss_pred HHHHHHHHC-C-CC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 999999624-9-98-99993461899999999888978899999999999772699
Q gi|255764463|r 268 VCFRIKEKF-G-LP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 268 ii~~~k~~~-~-~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd 320 (337)
+|.-.|--+ + +| +-||.|.=--...+.+-..|.=|....++|.- ..+-||+.
T Consensus 260 ~iAvaRl~l~~~i~~Iqa~w~~lg~~~~q~~L~~GanD~gGt~~~e~-i~~~ag~~ 314 (343)
T TIGR03551 260 VHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEES-ISRAAGAS 314 (343)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCHHHCCC
T ss_conf 99999997047765422266255989999999579846766667775-63621579
No 11
>PRK07360 FO synthase subunit 2; Reviewed
Probab=95.55 E-value=0.053 Score=34.73 Aligned_cols=221 Identities=19% Similarity=0.197 Sum_probs=111.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
+.=|+-|.+|.|.+++.++++.+.|++-+.+-++..++.+-.. .+.......++.||+.||++.+-+ ||
T Consensus 83 p~~~~ay~ls~eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~-----~~~~~y~~~~~~ik~~~p~i~i~a------~s 151 (375)
T PRK07360 83 KGDPGAFWLDIEEILEKAAEAVKAGATEVCIQGGLHPAADLNG-----SSLDFYLEILKAIKAEFPGIHLHA------FS 151 (375)
T ss_pred CCCCCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC-----CHHHHHHHHHHHHHHHCCCCEEEE------CC
T ss_conf 8997660278999999999998658808997688783445464-----518999999999998689855640------89
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE----------------EECCCCC-CCHHHHHHHHHHHCCCCCCC
Q ss_conf 114310013654462899999999999999628973----------------5246676-77999999999877885773
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADI----------------IAPSEMM-DGRVQEIRKKLDSHGHINVG 199 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi----------------vAPSdMM-DGrV~aIR~~Ld~~g~~~~~ 199 (337)
.---.-+-+...+.-.+.+..|.+ ||.|. ++|.-.- +-++..+|.+-...=-+.++
T Consensus 152 ~~Ei~~~a~~~g~~~~e~l~~Lke-------AGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~~~Ah~lGi~ttat 224 (375)
T PRK07360 152 PQEVQFAAREDGLSYEEVLKALKD-------AGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIVKTAHKLGLPTTST 224 (375)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-------CCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 999999886649988999999997-------6987588876210345566465989889999999999999829970100
Q ss_pred EECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---------------HCCCCEEEEC---C
Q ss_conf 003366643543010167531024467777443157211478898888766---------------4089879955---3
Q gi|255764463|r 200 IMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI---------------QESADMLLVK---P 261 (337)
Q Consensus 200 ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~---------------~EGAD~lMVK---P 261 (337)
+| | |--.|+.- -...-.+||+.+..- .+-...-+|+ |
T Consensus 225 mL----------~--------------Gh~Et~ee-rv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~~~~~~~~ 279 (375)
T PRK07360 225 MM----------Y--------------GHIETPEH-RIDHLSILREIQKETGGITEFIPLPFVHENAPLYERGRVKRGAP 279 (375)
T ss_pred EE----------C--------------CCCCCHHH-HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 26----------1--------------89899999-99999999988874498469971143589985000156788886
Q ss_pred CHHHHHHHHHHHHHC-C-CC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 114589999999624-9-98-999934618999999998889788999999999997726999
Q gi|255764463|r 262 GLPYLDVCFRIKEKF-G-LP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDG 321 (337)
Q Consensus 262 a~~yLDii~~~k~~~-~-~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~ 321 (337)
+.-||-++.-.|=-+ + +| +-||.|.=-....+.|-..|.=|...+++|--+ .+-||+..
T Consensus 280 ~~e~lk~~AvaRl~Ldn~i~~Iqa~Wv~~g~~~~q~aL~~GanD~ggt~~ee~i-~~~aG~~~ 341 (375)
T PRK07360 280 GLEDLKLYAVSRIFLGNWIKNIQPSWVKLGLKLAQEALNCGANDLGGTLMEEHI-TKMAGASG 341 (375)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 698999999999983388876577775448999999996699767665666750-01226899
No 12
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.45 E-value=0.14 Score=31.90 Aligned_cols=233 Identities=20% Similarity=0.182 Sum_probs=126.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf 87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337)
+-|...++-|.+-..++.+.+.||..|-+|-. +.|. .| +..+++..|+.- ..+.+|+|--++.
T Consensus 87 ~vGy~~~pddvv~~~v~~a~~~Gidv~rifd~----lndi--------~n-l~~ai~~~k~~G----~~~~~~i~yt~sp 149 (463)
T PRK12331 87 LLGYRNYADDVVESFVQKSIENGIDIIRIFDA----LNDV--------RN-LQTAVKATKKAG----GHAQVAISYTTSP 149 (463)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC----CCHH--------HH-HHHHHHHHHHCC----CEEEEEEEEECCC
T ss_conf 24311378089999999999859997887405----6646--------77-899999999707----8699999972588
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHC----CCCCCCEECHHHH
Q ss_conf 431001365446289999999999999962897352466767--------7999999999877----8857730033666
Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSH----GHINVGIMPYVAK 206 (337)
Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~----g~~~~~ImsYsaK 206 (337)
-| |++.+.++|....++|||.|+=-||.- -.|++||+.++-- .+. +.=|+-+.-
T Consensus 150 ~~-------------t~~yyv~~a~~l~~~Gad~I~ikD~aGll~P~~~~eLV~aLk~~~~lpI~~HtH~-t~Gla~an~ 215 (463)
T PRK12331 150 VH-------------TIDYFVKLAKEMQEIGADSICIKDMAGILTPYVAYELVKCIKENVTVPLEVHTHA-TSGIAEMTY 215 (463)
T ss_pred CC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHH
T ss_conf 67-------------6999999999999649988998678677688999999999997449856998368-875799999
Q ss_pred HHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH---C------
Q ss_conf 4354301016753102-44677774431572114788988887664089879955311458999999962---4------
Q gi|255764463|r 207 FNSSFYGPYRDAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK---F------ 276 (337)
Q Consensus 207 faS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~---~------ 276 (337)
.+-.==| -|.++.+ +.+.| -|=|=+...--.+++....|. |-|+-.+.+.-.|+.-+++--.. +
T Consensus 216 laAieAG--aDivD~a~~~~s~--gtsqP~~~s~v~~l~~~~~~~--~ld~~~l~~i~~y~~~vr~~y~~~~~~~~~~~~ 289 (463)
T PRK12331 216 LKAIEAG--ADIIDTAISPFAG--GTSQPATESMVIALQDLGYDT--GLDLEELSEIAEYFNPIRDHYREEGILNPKVKD 289 (463)
T ss_pred HHHHHCC--CCEEEECCCCCCC--CCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999849--9999623535467--978987999999985389999--989999999999999999999874478875766
Q ss_pred -CCCEEEEEC-CHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHHH
Q ss_conf -998999934-618999999-9988897889999999999977269999-820189
Q gi|255764463|r 277 -GLPTFAYQV-SGEYAMIKA-ASLQGWINKNDAMMESLLAFKRAGCDGI-FTYFAM 328 (337)
Q Consensus 277 -~~P~~aYqV-SGEYami~~-a~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A~ 328 (337)
+.-+..||+ -|-|+-++. +.+.|..|.=.-++|-.--.++-..+.+ +|=+..
T Consensus 290 ~d~~v~~hq~PGGm~snl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~~~VTP~SQ 345 (463)
T PRK12331 290 VEPKTLIYQVPGGMLSNLLSQLKEQGLADKYEEVLAEVPKVRADLGYPPLVTPLSQ 345 (463)
T ss_pred CCHHHEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCHHH
T ss_conf 77435123687306678999999778476799999999999997499983592889
No 13
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.36 E-value=0.17 Score=31.29 Aligned_cols=215 Identities=21% Similarity=0.245 Sum_probs=131.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf 87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337)
+=|...|+=|.+-+.++...+.||.-|=+| .|.|+-.=++.||+++|+.-.. .-.++| ||..
T Consensus 89 lvGYrhyaDDvVe~Fv~ka~~nGidvfRiF-------------DAlND~RNl~~ai~a~kk~G~h----~q~~i~-YT~s 150 (472)
T COG5016 89 LVGYRHYADDVVEKFVEKAAENGIDVFRIF-------------DALNDVRNLKTAIKAAKKHGAH----VQGTIS-YTTS 150 (472)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEC-------------HHCCCHHHHHHHHHHHHHCCCE----EEEEEE-ECCC
T ss_conf 136567845899999999986487579721-------------1104646799999999961863----689987-4268
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHC------CCCCCCEECHH
Q ss_conf 431001365446289999999999999962897352466767--------7999999999877------88577300336
Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSH------GHINVGIMPYV 204 (337)
Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~------g~~~~~ImsYs 204 (337)
- =.|++...+.|..+++.|+|.||=-||-- --|++||+.++-. --.....|+|-
T Consensus 151 P------------vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~yl 218 (472)
T COG5016 151 P------------VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYL 218 (472)
T ss_pred C------------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 8------------6528999999999997279878840000269868899999999974597069850455561799999
Q ss_pred HHHHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHCCCCEEEECCCHHHHHHHHHHHHHC-----
Q ss_conf 6643543010-16753102446777744315721147889888876--640898799553114589999999624-----
Q gi|255764463|r 205 AKFNSSFYGP-YRDAISTRDLLKGDKKTYYLDPANVQEAIREASID--IQESADMLLVKPGLPYLDVCFRIKEKF----- 276 (337)
Q Consensus 205 aKfaS~fYgP-FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D--~~EGAD~lMVKPa~~yLDii~~~k~~~----- 276 (337)
+- .- =|- .=|.|-| | +.| -|=| ++ .|.+-.+..+ -+.|-|+-.++..--|.- +++.++
T Consensus 219 kA-vE--AGvD~iDTAis-p-~S~--gtsq-P~---tEtmv~aL~gt~yDtgld~~~l~~~~~yf~---~vrkkY~~~~~ 284 (472)
T COG5016 219 KA-VE--AGVDGIDTAIS-P-LSG--GTSQ-PA---TETMVAALRGTGYDTGLDLELLEEIAEYFR---EVRKKYKGLLE 284 (472)
T ss_pred HH-HH--HCCCHHHHHHC-C-CCC--CCCC-CC---HHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHHHHHHHCCC
T ss_conf 99-98--17642221004-5-557--8889-95---899999962799876536999999999999---99998753268
Q ss_pred ------CCCEEEEECCHHH--HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ------9989999346189--9999999888978899999999999772699
Q gi|255764463|r 277 ------GLPTFAYQVSGEY--AMIKAASLQGWINKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 277 ------~~P~~aYqVSGEY--ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd 320 (337)
+--+-.|||-|-- .|+...-++|.+|.-.-+ |.-+.|--.|
T Consensus 285 ~~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eV---LeEvprVred 333 (472)
T COG5016 285 PQAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEV---LEEVPRVRED 333 (472)
T ss_pred CCCCCCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHHH
T ss_conf 401478875067637717889999999873456679999---9984888860
No 14
>PRK08445 hypothetical protein; Provisional
Probab=95.33 E-value=0.06 Score=34.38 Aligned_cols=220 Identities=20% Similarity=0.205 Sum_probs=119.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
+.=|+-|.+|.+.+.+.++++.+.|+.-|.+-+++.++++=+ .....+|.||+.||++- +..||
T Consensus 65 ~~~~~aY~ls~eei~~~~~~a~~~g~tEv~i~GG~~P~l~~~----------yY~~l~r~ik~~~P~i~------ihaft 128 (348)
T PRK08445 65 LKEEDAYILSFEEIDQKIEELLAIGGTQILFQGGVHPKLKIE----------WYENLVSHIAQKYPTIT------IHGFS 128 (348)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCCC------CCCCC
T ss_conf 999876227999999999999864981899827989999777----------99999999997577542------42799
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCE-------------------------------EECCCCCCCHHH
Q ss_conf 11431001365446289999999999999-9628973-------------------------------524667677999
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQ-ADAGADI-------------------------------IAPSEMMDGRVQ 184 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~-A~AGaDi-------------------------------vAPSdMMDGrV~ 184 (337)
.---.-+-+-..+.-++.+..|-+.-|.- --.||.| -..+-||=|.|.
T Consensus 129 ~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~AH~lGi~ttaTMlyGhiE 208 (348)
T PRK08445 129 AVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQAHKIGMKSTATMMFGTVE 208 (348)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 99999999981989999999999819887888662634889998748888999999999999998699641213626779
Q ss_pred ----------HHHHHHHHCC-CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ----------9999998778-85773003366643543010167531024467777443157211478898888766408
Q gi|255764463|r 185 ----------EIRKKLDSHG-HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 185 ----------aIR~~Ld~~g-~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
.+|+.=|+.| |+.-.-++ || |.|.... .+|
T Consensus 209 t~e~rv~HL~~lR~lQdeTgGF~~FIpl~-----------------------------F~--p~nt~l~--------~~~ 249 (348)
T PRK08445 209 NDEEIIEHWEHIRDLQDETGGFRAFILWS-----------------------------FQ--PDNTPLK--------EEH 249 (348)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECC-----------------------------CC--CCCCHHH--------CCC
T ss_conf 99999999999999998619978998543-----------------------------10--6997020--------037
Q ss_pred CCEEEECCCHHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 98799553114589999999624-998-9999346189999999988897889999999999977269999820189999
Q gi|255764463|r 254 ADMLLVKPGLPYLDVCFRIKEKF-GLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAA 331 (337)
Q Consensus 254 AD~lMVKPa~~yLDii~~~k~~~-~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a 331 (337)
-..-. -++.-||-++.-.|=-. ++| +-+|.|.=-..+-+.|-.-|.=|....++|--+ .+-|||..-+ -..++.
T Consensus 250 ~~~~~-~~~~e~Lk~~AvsRL~Ldni~~Iqa~Wv~~G~~~aq~aL~~GanD~gGT~~eE~I-~~aAGa~~~~--~~~~l~ 325 (348)
T PRK08445 250 PEIKK-QSSNRYLRLLAVSRLFLDNFKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENV-VKAAGASFRM--NQAEMI 325 (348)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCEE-HHHCCCCCCC--CHHHHH
T ss_conf 87789-9879999999999998648876062102057899999995699777655101011-2510899889--999999
Q ss_pred HHHH
Q ss_conf 9985
Q gi|255764463|r 332 RILT 335 (337)
Q Consensus 332 ~~L~ 335 (337)
+..+
T Consensus 326 ~lI~ 329 (348)
T PRK08445 326 ELIK 329 (348)
T ss_pred HHHH
T ss_conf 9999
No 15
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=95.32 E-value=0.11 Score=32.66 Aligned_cols=227 Identities=16% Similarity=0.144 Sum_probs=131.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
|.=|-++.+.+.++++++.+.|++-|++=++..++..-+ +.-..++.||+.||++.+ -.+|.-.
T Consensus 85 ~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~----------y~~~~~~~ik~~~p~~~i------~a~s~~e 148 (370)
T COG1060 85 PKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE----------YYEELFRTIKEEFPDLHI------HALSAGE 148 (370)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCHHH------CCCCHHH
T ss_conf 655316999999999999875986999805768774367----------999999999885730343------0167888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE----------------EE-CCCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 310013654462899999999999999628973----------------52-4667677999999999877885773003
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADI----------------IA-PSEMMDGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi----------------vA-PSdMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
-.=+-..+.....+.++.|- +||.|- ++ |.---+.|+..++.+. ..|...++.|-
T Consensus 149 i~~~~~~~~~s~~E~l~~Lk-------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah-~lGI~~tatml 220 (370)
T COG1060 149 ILFLAREGGLSYEEVLKRLK-------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH-RLGIPTTATML 220 (370)
T ss_pred HHHHHHCCCCCHHHHHHHHH-------HCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHHH-HCCCCCCCEEE
T ss_conf 67987436888999999999-------76987674754114167799863798899999999999999-76998420347
Q ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------------HCCC---CEEEECCCHHHH
Q ss_conf 366643543010167531024467777443157211478898888766-------------4089---879955311458
Q gi|255764463|r 203 YVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI-------------QESA---DMLLVKPGLPYL 266 (337)
Q Consensus 203 YsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~-------------~EGA---D~lMVKPa~~yL 266 (337)
|--- .+ ..|.+++ -+.+|+.+.-- ..|. ...-=.++..+|
T Consensus 221 ~Gh~-----E~-~ed~~~h------------------l~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l 276 (370)
T COG1060 221 LGHV-----ET-REDRIDH------------------LEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDL 276 (370)
T ss_pred EEEC-----CC-HHHHHHH------------------HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 8732-----88-8999999------------------9999999998589579980554578887666678989989999
Q ss_pred HHHHHHHHHC--CCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH-HHHHHHHHHC
Q ss_conf 9999999624--998-99993461899999999888978899999999999772699998201-8999999850
Q gi|255764463|r 267 DVCFRIKEKF--GLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF-AMEAARILTH 336 (337)
Q Consensus 267 Dii~~~k~~~--~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~-A~~~a~~L~~ 336 (337)
-+|+-.+--+ .++ +.+|.|.-+-.+...+-..|.-|.-..+.| =.-.+.||+.- -..- ..++.+++++
T Consensus 277 ~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~-E~v~~~a~~~~-~~~~~~eel~~~i~~ 348 (370)
T COG1060 277 KAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYE-EKVNPAAGAFS-GDWRSVEELAALIKE 348 (370)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCC-CCCCCHHHHHHHHHH
T ss_conf 9999999970676542417441036699999998286167677755-34365555556-789999999999998
No 16
>PRK08508 biotin synthase; Provisional
Probab=95.06 E-value=0.23 Score=30.41 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCC
Q ss_conf 6328-899999999999988893676330256334554454215765379999999997301447986133271001143
Q gi|255764463|r 62 VMRM-SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGH 140 (337)
Q Consensus 62 v~R~-Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGH 140 (337)
.|++ +.+.+++.++.+.+.|+..|-+-- +-+.... .+...++++|+.||+.+|++.+ |+|
T Consensus 36 ~Y~l~~~eeIl~~A~~a~~~G~~rf~lv~----sg~~~~~----~~~e~v~~~v~~Ik~~~~~l~~----c~s------- 96 (279)
T PRK08508 36 RYKRKEIEQIVQEAKMARANGALGFCLVT----AGRGLDD----KKLEYVAKAAKAVKKEVPGLHL----IAC------- 96 (279)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEEE----ECCCCCH----HHHHHHHHHHHHHHHCCCCEEE----EEE-------
T ss_conf 10789999999999999975997689998----2368875----4499999999998633799357----611-------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--------------EECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 10013654462899999999999999628973--------------524667677999999999877885
Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADI--------------IAPSEMMDGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--------------vAPSdMMDGrV~aIR~~Ld~~g~~ 196 (337)
+|++.. +|+..+.+||+|- |+|.---|-|+..||.+ .+.|++
T Consensus 97 lG~l~~-------------e~~~~LkeAGvdrY~hNlETs~~~y~~I~tThty~dRl~tl~~~-k~aGl~ 152 (279)
T PRK08508 97 NGMASV-------------EQLKELKKAGIFSYNHNLETSKEFFPKICTTHSWEERFQTCLNA-KEAGLG 152 (279)
T ss_pred CCCCCH-------------HHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHH-HHCCCE
T ss_conf 785799-------------99999998397123076676768757658998889999999999-981994
No 17
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.02 E-value=0.18 Score=31.19 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=120.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf 87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337)
+=|...|+=|.+-+.++++.+.||--|=+|- .+ |.--=+..+|++.|+.- -++..|+| ||-+
T Consensus 619 ~vGY~~Ypdnvv~~fv~~a~~~GiDvfRiFD----~L---------N~~~nm~~~i~~v~~~g----~~~e~aic-yTGd 680 (1147)
T PRK12999 619 AVGYTNYPDNVVRAFVREAAAAGIDVFRIFD----SL---------NWVENMRVAIDAVRETG----KVAEAAIC-YTGD 680 (1147)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC----CC---------CCHHHHHHHHHHHHHCC----CEEEEEEE-ECCC
T ss_conf 4576679737999999999983989116731----34---------46677899999999709----88999987-4257
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHCCCCCCCEECHHHHHHHH
Q ss_conf 431001365446289999999999999962897352466767--------799999999987788577300336664354
Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSHGHINVGIMPYVAKFNSS 210 (337)
Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~ 210 (337)
|++-.. ..-|++.+.++|.-+.++|||++|=-||-- --|+++|+.. +++|--++--=+..
T Consensus 681 ----i~dp~~--~~~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~~------~lPIhlHtHdTsG~ 748 (1147)
T PRK12999 681 ----ILDPAR--AKYDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEEV------DLPIHLHTHDTSGN 748 (1147)
T ss_pred ----CCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC------CCCEEEECCCCCCH
T ss_conf ----778788--876699999999999976898899714454688799999999998616------98459843678855
Q ss_pred HHCCHH-------HHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC----C
Q ss_conf 301016-------753102-4467777443157211478898888766408987995531145899999996249----9
Q gi|255764463|r 211 FYGPYR-------DAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG----L 278 (337)
Q Consensus 211 fYgPFR-------dA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~----~ 278 (337)
--.-.- |.++.+ .++.| -|=|=+...--.|++...+|- |-|+-.+-.--.|+.-+|..=..|. -
T Consensus 749 ~~at~laA~eAGvDiVD~A~ssmSg--~TSQP~l~slvaaL~gT~rdt--gLdle~L~~is~Ywe~VR~~Y~~FEs~~~~ 824 (1147)
T PRK12999 749 GLATYLAAAEAGVDIVDVAMASMSG--LTSQPSLSSLVAALAGTERDT--GLDLEALRDLSPYWEAVRPYYAPFESGLKS 824 (1147)
T ss_pred HHHHHHHHHHCCCCEEECCCHHHCC--CCCCCCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999998599989635411028--988988999999843789898--989899999999999999998730455667
Q ss_pred ---CEEEEECC-HHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf ---89999346-18999999-9988897889999999999977
Q gi|255764463|r 279 ---PTFAYQVS-GEYAMIKA-ASLQGWINKNDAMMESLLAFKR 316 (337)
Q Consensus 279 ---P~~aYqVS-GEYami~~-a~~~g~~d~~~~~~E~l~~~kR 316 (337)
-|.-+|+- |-|+-++. +-++|++|.=.-+++.+--..+
T Consensus 825 ~d~~Vy~hemPGGq~SNL~~Qa~~~Gl~dr~~EV~~~y~~Vn~ 867 (1147)
T PRK12999 825 PTTEVYLHEMPGGQYSNLKQQARSLGLGDRFEEVKEMYADVNR 867 (1147)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 8865377217950565699999867818679999999999999
No 18
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.01 E-value=0.12 Score=32.33 Aligned_cols=164 Identities=19% Similarity=0.231 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC--------CC
Q ss_conf 9999999997301447986133271001143100136544628999999999999996289735246676--------77
Q gi|255764463|r 110 INEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM--------DG 181 (337)
Q Consensus 110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM--------DG 181 (337)
+...++.|-... ++=|+.|. ++|.-+ + ..+ .+..-.+.+||+--|.--|-. +|
T Consensus 66 ~~~~~~~I~~a~-~lPviaD~------DtGyG~------~---~nv---~rtV~~~e~aGvagi~IEDq~~pKrcgh~~g 126 (292)
T PRK11320 66 VLIDVRRITDAC-DLPLLVDI------DTGFGG------A---FNI---ARTIKSMIKAGAAAVHIEDQVGQKRCGHRPN 126 (292)
T ss_pred HHHHHHHHHHCC-CCCEEEEC------CCCCCC------H---HHH---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
T ss_conf 999999998355-88879877------677882------7---889---9999999974996898415556655686667
Q ss_pred --------HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf --------999999999877885773003366643543010167531024467777443157211478898888766408
Q gi|255764463|r 182 --------RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 182 --------rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
.++.||.+.+...-.+..|++-. --.....-+||++-+....+-|
T Consensus 127 k~lv~~~e~~~KI~AA~~ar~~~df~IiART---------------------------DA~~~~gldeAi~Ra~aY~eAG 179 (292)
T PRK11320 127 KEIVSQEEMVDRIKAAVDARTDPDFVIMART---------------------------DALAVEGLDAAIERAQAYVEAG 179 (292)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC---------------------------CCCCCCCHHHHHHHHHHHHHCC
T ss_conf 5333499999999999985679985999953---------------------------6334588699999999999779
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHHHHCCCC----------CHHHHHHHHHHHHHHHCCC
Q ss_conf 987995531145899999996249989999346189---999999988897----------8899999999999772699
Q gi|255764463|r 254 ADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEY---AMIKAASLQGWI----------NKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 254 AD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEY---ami~~a~~~g~~----------d~~~~~~E~l~~~kRAGAd 320 (337)
||+++| +|+...+-++.+.+.+..|+.+-.+.|-- --.+-..+.|+= ---+++.+.+..+++.|-.
T Consensus 180 AD~if~-ea~~~~ee~~~~~~~~~~Pll~n~~e~g~tP~~s~~el~~lG~~~viyp~~~lraa~~Am~~~~~~l~~~G~~ 258 (292)
T PRK11320 180 ADMIFP-EAITELDMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAENVYEAIRRDGTQ 258 (292)
T ss_pred CCEEEC-CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 989941-7899999999999977999899848999998879999997799899988699999999999999999981994
No 19
>PRK07094 biotin synthase; Provisional
Probab=94.93 E-value=0.4 Score=28.79 Aligned_cols=101 Identities=24% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
...||+|.+.+++.++++.+.|++.|.|-.+..+. .+...++..|+.||+. +++.| ||+
T Consensus 65 ~~rY~Ls~eeI~~~A~~a~~~G~~~~~lqsG~~~~----------~~~e~~~~ii~~Ik~~-~~l~i----~lS------ 123 (323)
T PRK07094 65 IKRYRLSPEEILECAKKAYELGYGTIVLQSGEDPY----------YTDEKIADIIKEIKKE-LDVAI----TLS------ 123 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC----------CCHHHHHHHHHHHHHC-CCCEE----EEE------
T ss_conf 77437999999999999998699889996489988----------6699999999998605-99459----975------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE---------------EECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 310013654462899999999999999628973---------------524667677999999999877885
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADI---------------IAPSEMMDGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi---------------vAPSdMMDGrV~aIR~~Ld~~g~~ 196 (337)
.|.+. .+++..+.+||+|- |.|..--+.|+..||.+ -+.|+.
T Consensus 124 -lG~l~-------------~e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~-k~~G~~ 180 (323)
T PRK07094 124 -LGERS-------------YEEYKAWKEAGADRYLLRHETADRELYEKLHPGMSFENRIQCLKDL-KELGYE 180 (323)
T ss_pred -CCCCC-------------HHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHH-HHCCCC
T ss_conf -78799-------------9999999985977441245656989867758999989999999999-983981
No 20
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.88 E-value=0.27 Score=29.94 Aligned_cols=230 Identities=20% Similarity=0.196 Sum_probs=125.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf 87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337)
+-|...|+-|.+-..++.+.+.||.-|-+|= .+ |.-.=+..+++.+|+.- ..+..|+| ||..
T Consensus 88 ~vGy~~ypd~vv~~fv~~~~~~GidifRiFD----~L---------Ndv~nm~~~~~~v~~~G----~~~e~~i~-yt~s 149 (580)
T PRK09282 88 LLGYRHYADDVVEKFVEKAAENGIDVFRIFD----AL---------NDVRNMETAIKAVKKVG----AHAQGTIS-YTTS 149 (580)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE----CC---------CCHHHHHHHHHHHHHCC----CEEEEEEE-EECC
T ss_conf 2564458868999999999976997899740----12---------32577899999998459----87999999-7158
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC--------CCHHHHHHHHHHHC----CC--CCCCEECHH
Q ss_conf 43100136544628999999999999996289735246676--------77999999999877----88--577300336
Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM--------DGRVQEIRKKLDSH----GH--INVGIMPYV 204 (337)
Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM--------DGrV~aIR~~Ld~~----g~--~~~~ImsYs 204 (337)
- --|++.+.+.|-...++|||++|=-||- ---|.++|+.+|-- .+ ...++++|-
T Consensus 150 P------------~ht~~yy~~~a~~l~~~G~d~i~iKDmaGll~P~~a~~LV~alk~~~~lpI~~HtH~t~G~~~a~~l 217 (580)
T PRK09282 150 P------------VHTLETWVDLAKQLEEMGCDSICIKDMAGLLTPYAAYELVSALKKEVDLPVHLHCHATTGLATMTYL 217 (580)
T ss_pred C------------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 8------------7638999999999997499889972665578989999999999986198169982477647999999
Q ss_pred HHHHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC------
Q ss_conf 664354301016753102-4467777443157211478898888766408987995531145899999996249------
Q gi|255764463|r 205 AKFNSSFYGPYRDAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG------ 277 (337)
Q Consensus 205 aKfaS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~------ 277 (337)
+ -.==| =|.++.+ ..+.| -|=|=+...--.+++....| -|-|+=.+.+.-.|+.-++..-..|.
T Consensus 218 ~---A~eAG--vdivD~a~~~~s~--gtsqP~~~~~v~~l~~~~~~--~~ld~~~l~~~~~y~~~vr~~y~~~e~~~~~~ 288 (580)
T PRK09282 218 K---AVEAG--VDILDTAISSMSM--GTSHPPTETVVAALQGTPYD--TGLDLELLEEIAAYFREVRKKYAKFEGELKGV 288 (580)
T ss_pred H---HHHHC--CCEEEECCCCCCC--CCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9---99848--8867001355348--87898799999987348989--89899999999999999999853278666668
Q ss_pred -CCEEEEECC-HHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHH
Q ss_conf -989999346-1899999-99988897889999999999977269999-82018
Q gi|255764463|r 278 -LPTFAYQVS-GEYAMIK-AASLQGWINKNDAMMESLLAFKRAGCDGI-FTYFA 327 (337)
Q Consensus 278 -~P~~aYqVS-GEYami~-~a~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A 327 (337)
.-+.-+|+- |-|+-++ .+.+.|+.|.=.-+++-.--.++-.-+.+ +|=+.
T Consensus 289 d~~v~~hq~PGG~~snl~~Ql~~~g~~dr~~eV~~e~~~V~~~lG~~~~VTP~S 342 (580)
T PRK09282 289 DSRVLVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 342 (580)
T ss_pred CHHHEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCHH
T ss_conf 953565148820667799999976847569999999999999759986128499
No 21
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.67 E-value=0.34 Score=29.34 Aligned_cols=227 Identities=19% Similarity=0.164 Sum_probs=116.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH-C
Q ss_conf 878632889999999999998889367633025633455445421576537999999999730144798613327100-1
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT-I 137 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT-~ 137 (337)
..|...++-|.+-..++...+.||.-|-+|-. +-| -.-+.++++.+|+.-. .+-+|+| || +
T Consensus 96 ~vgy~~ypddvv~~fv~~~~~~GidvfriFD~----LNd---------~~n~~~ai~~vk~~G~----~~~~~i~-yt~s 157 (468)
T PRK12581 96 LLGYRHYADDIVDKFISLSAQNGIDVFRIFDA----LND---------PRNIQQALRAVKKTGK----EAQLCIA-YTTS 157 (468)
T ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC----CCC---------HHHHHHHHHHHHHCCC----EEEEEEE-ECCC
T ss_conf 20114588289999999999759987997314----676---------7899999999996387----4899999-6689
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHHHCCCCCCCEECH------
Q ss_conf 1431001365446289999999999999962897352466767--------79999999998778857730033------
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLDSHGHINVGIMPY------ 203 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld~~g~~~~~ImsY------ 203 (337)
.- .|++.+.+.|....++|||.|+=-||-- -.|.+||+. .+++|-=+
T Consensus 158 p~-------------ht~~yy~~~ak~l~~~Gad~I~iKDmaGlL~P~~a~~LV~~lK~~------~~iPI~~HtH~t~G 218 (468)
T PRK12581 158 PV-------------HTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM------TNLPLIVHTHATSG 218 (468)
T ss_pred CC-------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCC
T ss_conf 75-------------549999999999997399989984787776889999999999836------79865998258875
Q ss_pred ---HHHHHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HC
Q ss_conf ---6664354301016753102-4467777443157211478898888766408987995531145899999996---24
Q gi|255764463|r 204 ---VAKFNSSFYGPYRDAISTR-DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KF 276 (337)
Q Consensus 204 ---saKfaS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~ 276 (337)
++=.+-.==| =|.++.+ ..+.| -|=|=+...--.++++...|. |-|.-.+.+.-.|+.-+++--. .+
T Consensus 219 la~a~~laAieAG--aDiVD~Ai~~~s~--gtSqP~~~s~v~~l~~~~~~~--~ld~~~l~~~~~y~~~vr~~y~~~~~~ 292 (468)
T PRK12581 219 ISQMTYLAAVEAG--ADRIDTALSPFSE--GTSQPATESMYLALKEAGYDI--TLDETLLEQAANHLRQARQKYLADGIL 292 (468)
T ss_pred HHHHHHHHHHHCC--CCEEEECCCCCCC--CCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4999999999819--9999744645357--988866999999973389887--668899999999999999987423557
Q ss_pred -------CCCEEEEECCH-HHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHCCCEE-EECHHH
Q ss_conf -------99899993461-8999999-9988897889999999999977269999-820189
Q gi|255764463|r 277 -------GLPTFAYQVSG-EYAMIKA-ASLQGWINKNDAMMESLLAFKRAGCDGI-FTYFAM 328 (337)
Q Consensus 277 -------~~P~~aYqVSG-EYami~~-a~~~g~~d~~~~~~E~l~~~kRAGAd~I-itY~A~ 328 (337)
+.-+..+|+-| -|+-++. +.+.|..|.=.-++|-.--.++-.-+.+ +|=+.+
T Consensus 293 ~~~~~~~d~~v~~hqiPGGm~sNl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~~~VTPsSQ 354 (468)
T PRK12581 293 DPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYPPLVTPLSQ 354 (468)
T ss_pred CCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCHHH
T ss_conf 86556788145316682347888999999778364599999999999996699983697549
No 22
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=94.53 E-value=0.37 Score=29.03 Aligned_cols=228 Identities=16% Similarity=0.196 Sum_probs=129.3
Q ss_pred CCCCCCCCCCHHHHHHHH-HHHHHCCCCEEE--EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEECCC
Q ss_conf 888786328899999999-999988893676--33025633455445421576537999999999730--1447986133
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKI-KQVADLGIPAIA--IFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI--PNIGIITDVA 131 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~ei-e~~~~lGI~av~--LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f--pdl~vi~DVc 131 (337)
..-|...-++--.++++| ++-++.|-.-|- -|+.....++...-.+- -.-+...|++.-|+.- .+..|..++-
T Consensus 31 ~~~~E~lNl~~Pe~V~~IH~~Yi~AGAdvI~TNTFgAn~~~L~~~gle~~--v~eIN~aav~lAreAa~g~~~~VAGsIG 108 (608)
T PRK08645 31 DTCFEELNLSHPELILRIHREYIEAGADVIQTNTYGANRIKLARYGLEDK--VKEINQAAVRLAKEAAEGKDTYILGTIG 108 (608)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCHHH--HHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99967987388699999999999961999981787167999987384889--9999999999999981799849999538
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCEEC-HHHHHHH
Q ss_conf 271001143100136544628999999999999996289735246676779999999998778-85773003-3666435
Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG-HINVGIMP-YVAKFNS 209 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g-~~~~~Ims-YsaKfaS 209 (337)
|.+ +....+.++.|+-.+.+.+|+..+.++|+|.+----|.|-. .++.++.... ..+.+|+. .|.
T Consensus 109 --P~~-----~~~~~~~~~~~e~~~~f~eQ~~~L~e~GvD~illET~~dl~--E~~~Al~aar~~~~lPvi~s~t~---- 175 (608)
T PRK08645 109 --PIR-----GDGPQGDLSLEEILEEFREQIDALLEEGVDGLLLETFYDLE--ELLEALKAARKKTDLPIIAQVAF---- 175 (608)
T ss_pred --CCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCHH--HHHHHHHHHHHHCCCCEEEEEEE----
T ss_conf --878-----89999999999999999999999975799899986305999--99999999997569979999998----
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH-H--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 430101675310244677774431572114788988887664089879955311-4--5899999996249989999346
Q gi|255764463|r 210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL-P--YLDVCFRIKEKFGLPTFAYQVS 286 (337)
Q Consensus 210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~-~--yLDii~~~k~~~~~P~~aYqVS 286 (337)
+...+-++-....+++.+.. .-|||.+.+--+. | -+..++.++..++.|+.+|-=+
T Consensus 176 ------------------~~~G~t~~G~~~~~a~~~l~---~~gad~VG~NC~~GP~~m~~~l~~l~~~~~~pl~v~PNA 234 (608)
T PRK08645 176 ------------------HEDGVTQNGTSLEEALKQLV---ALGADVVGLNCGLGPYHMLEALKRIELPADAPLSAYPNA 234 (608)
T ss_pred ------------------CCCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf ------------------89980899997999999986---289988988797899999999999874259818997889
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf 189999999988897889999999999977269999
Q gi|255764463|r 287 GEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGI 322 (337)
Q Consensus 287 GEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~I 322 (337)
|-=...- .+.-+-...+-+-+...-|...||++|
T Consensus 235 GlP~~~~--gr~~Y~~tPe~Fa~~a~~~~~~Ga~iI 268 (608)
T PRK08645 235 GLPEYVE--GRYVYSANPEYFAEYAREFVEEGVRLI 268 (608)
T ss_pred CCCCCCC--CEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9988789--830278999999999999998599799
No 23
>PRK08444 hypothetical protein; Provisional
Probab=94.44 E-value=0.23 Score=30.43 Aligned_cols=241 Identities=15% Similarity=0.079 Sum_probs=124.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 88786328899999999999988893676330256334554454215765379999999997301447986133271001
Q gi|255764463|r 58 SMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 58 SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
.=|+-|.+|.+.+++.++++.+.|++-|.+=+++.++.+-+ .....+|.||+.||++.| ..||.
T Consensus 73 ~~~~aY~ls~eei~~~~~ea~~~G~tev~i~GG~~P~~~~e----------yY~~l~r~ik~~~P~i~i------~aft~ 136 (353)
T PRK08444 73 KNPNPYTMSHEEILEIVKESVKRGIKEVHIVSAHNPNYGYQ----------WYLEIFKMIKEAYPNLHV------KAMTA 136 (353)
T ss_pred CCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCEEE------EECCH
T ss_conf 99987666999999999999975987899814759899758----------899999999985885047------71778
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHCCC--------CEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECHH--H
Q ss_conf 14310013654462899999999999-9996289--------735246676779-9999999987788577300336--6
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAV-IQADAGA--------DIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPYV--A 205 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al-~~A~AGa--------DivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsYs--a 205 (337)
---+-+-.-..+.-.+.+..|-+.-+ +.--.|| ++|||.-.-.-+ +..+|.+ -+.|..-+.-|=|. -
T Consensus 137 ~EI~~~a~~~~~s~~evL~~Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~A-H~lGi~ttaTmmyGhvE 215 (353)
T PRK08444 137 AEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYW-HKKGKQSNATMLFGHIE 215 (353)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHH-HHCCCCCCEEEECCCCC
T ss_conf 99999999809999999999998198757898720037778976189989999999999999-98299664146778879
Q ss_pred HHHH--HHHCCHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHHHHHC-CC
Q ss_conf 6435--430101675310244677-7744315721147889888876640898799553114---589999999624-99
Q gi|255764463|r 206 KFNS--SFYGPYRDAISTRDLLKG-DKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP---YLDVCFRIKEKF-GL 278 (337)
Q Consensus 206 KfaS--~fYgPFRdA~~S~p~~~g-dr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~---yLDii~~~k~~~-~~ 278 (337)
.+.- .-.--.|+.-+-+..|.- ---+||-+. ... -++|... ||-++.-.|=-+ ++
T Consensus 216 t~e~rv~HL~~lR~lQd~tgGF~~FIPl~f~~~~--t~l----------------~~~~~~t~~e~Lr~~AisRl~Ldni 277 (353)
T PRK08444 216 NREHRIDHMLRLRDLQDKTGGFNAFIPLVYQREN--NYL----------------KVEKFPSSQEILKTIAISRILLDNI 277 (353)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCC----------------CCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999836557983589765657899--857----------------7789999899999999999986387
Q ss_pred -CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf -89999346189999999988897889999999999977269999820189999998
Q gi|255764463|r 279 -PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 279 -P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
-+-+|.|.=--.+-+.|-..|.=|....++|--+ .+-|||..--.--..++.+..
T Consensus 278 ~~IqasWv~~G~~~aq~aL~~GanDlggT~~eE~i-~~~aGa~~~~~~~~~~l~~~I 333 (353)
T PRK08444 278 PHIKAYWATLTLNLALVAQEFGANDLDGTIEKESI-QSAAGAKSAHGLSKEDFIFLI 333 (353)
T ss_pred CCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCE-ECCCCCCCCCCCCHHHHHHHH
T ss_conf 86154456237899999996699677555554524-421258998889999999999
No 24
>PRK05927 hypothetical protein; Provisional
Probab=94.43 E-value=0.14 Score=31.92 Aligned_cols=205 Identities=15% Similarity=0.153 Sum_probs=111.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
+.=|+-|.+|.|.+++.++++.+.|++-|.+=+++.+++.- ......+|.||+.||++.|=+ ||
T Consensus 68 ~~~~~ay~ls~eei~~~~~e~~~~G~tEv~i~GG~~P~l~~----------eyy~~l~r~ik~~~P~i~iha------fs 131 (350)
T PRK05927 68 PRSSDAYLLSFDEFRSLMQRYVSSGVKTVLLQGGVHPQLGI----------DYLEELVRITVQEFPSLHPHF------FS 131 (350)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH----------HHHHHHHHHHHHHCCCCCCCC------CC
T ss_conf 99987532799999999999986698389982688999986----------999999999997488866566------99
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCE--------EEC-----------------------CCCCCCHHH
Q ss_conf 1143100136544628999999999999-99628973--------524-----------------------667677999
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVI-QADAGADI--------IAP-----------------------SEMMDGRVQ 184 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~-~A~AGaDi--------vAP-----------------------SdMMDGrV~ 184 (337)
.---+-+-.-..+.-++.++.|.+..+- .--.||.| ||| +-||=|.|.
T Consensus 132 ~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~AH~lGi~ttaTmlyGhiE 211 (350)
T PRK05927 132 AVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKLAHRLGFRSTATMMFGHVE 211 (350)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 99999999885999999999999737676899875016877775148888899999999999998599752024636879
Q ss_pred ----------HHHHHHHHCC-CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ----------9999998778-85773003366643543010167531024467777443157211478898888766408
Q gi|255764463|r 185 ----------EIRKKLDSHG-HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 185 ----------aIR~~Ld~~g-~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
.||+.=|+.| |+....++| | |.|....- ...++
T Consensus 212 t~e~ri~HL~~lR~lQdeTgGF~~FIpl~F-----------------------------~--p~nt~l~~-----~~~~~ 255 (350)
T PRK05927 212 NPEDILLHLQTLRDAQDENPGFYSFIPWSY-----------------------------K--PGNTALGR-----RVPQQ 255 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCC-----------------------------C--CCCCHHHH-----CCCCC
T ss_conf 999999999999998765098799994676-----------------------------5--48874654-----27889
Q ss_pred CCEEEECCCHHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 98799553114589999999624-998-99993461899999999888978899999999999772699
Q gi|255764463|r 254 ADMLLVKPGLPYLDVCFRIKEKF-GLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 254 AD~lMVKPa~~yLDii~~~k~~~-~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd 320 (337)
+ ++--||-++.-.|=-. +.| +-||.|.=--.+-+.|-..|.=|....++|--+ .+-||+.
T Consensus 256 ~------~~~~~Lr~~AvaRl~Ldn~~hIqa~Wv~~G~~~aq~aL~~GanDlgGT~~eE~I-~~aaG~~ 317 (350)
T PRK05927 256 A------SPELYYRILALARIFLDNFDHIAASWFGEGKEEGAKGLHYGADDFGGTILDESV-HKCTGWD 317 (350)
T ss_pred C------CHHHHHHHHHHHHHHCCCCCCEEECEEECCHHHHHHHHHCCCCCCCCCCEEEEE-ECCCCCC
T ss_conf 9------845759999999997069886372405257999999996699767655300046-4322899
No 25
>PRK09234 fbiC FO synthase; Reviewed
Probab=94.37 E-value=0.17 Score=31.37 Aligned_cols=104 Identities=23% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHHHHHHHH
Q ss_conf 730033666435430101675310244677774431572114788988887664089879955-------3114589999
Q gi|255764463|r 198 VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLPYLDVCF 270 (337)
Q Consensus 198 ~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~yLDii~ 270 (337)
|.|-.+..|||+- | . -+||-..|-|++ .|-.+.+..-.+.||.-|.+- |+-.|+|+++
T Consensus 537 TNVC~~~C~FCAF-~---------r--~~~~~~aY~ls~---eeI~~r~~EA~~~GaTEV~iqGGihP~l~~~~Y~di~r 601 (846)
T PRK09234 537 TNICYTGCRFCAF-A---------Q--RKGDADAYSLSL---DEVADRAWEAWVAGATEVCMQGGIDPELPGTGYADLVR 601 (846)
T ss_pred HHHHHCCCCCCCC-C---------C--CCCCCCCEECCH---HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 8775517973514-4---------7--889987611899---99999999999769879983478798998789999999
Q ss_pred HHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999624-998999934618999999998889788999999999997726999982
Q gi|255764463|r 271 RIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 271 ~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
.+|+.+ .+-+-||.-. -|.+.++.--+ .+.|.|..+|-||-|-+=-
T Consensus 602 ~iK~~~P~ihihAFSp~----EI~~~A~~~g~----s~~E~L~~LkeAGL~SlPG 648 (846)
T PRK09234 602 AVKARVPSMHVHAFSPM----EIANGATRSGL----SIREWLTALREAGLDTIPG 648 (846)
T ss_pred HHHHHCCCCEEECCCHH----HHHHHHHHCCC----CHHHHHHHHHHCCCCCCCC
T ss_conf 99986898704508999----99999998299----9999999999809777999
No 26
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.28 E-value=0.46 Score=28.41 Aligned_cols=259 Identities=19% Similarity=0.156 Sum_probs=132.3
Q ss_pred CCCCCCCHHHHH-HHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 563128988999-8634778887733116667589881104888786328899999999999988893676330256334
Q gi|255764463|r 17 MRRNRKSNWIRE-MVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDL 95 (337)
Q Consensus 17 ~RRlR~~~~iR~-Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~ 95 (337)
+|-|+.++|-|= .+++.. |+-.+| ++.-|.| +-|...|+-|.+-+.++.+.+.||.-|-+|- .+
T Consensus 56 ~Rfl~EdPWerLr~lr~~~--pnt~lQ--mLlRG~N-------~vGy~~ypddvv~~fv~~~~~~GidifRiFD----aL 120 (499)
T PRK12330 56 IRFLNEDPWERLRTFRKLM--PNSKLQ--MLLRGQN-------LLGYRHYEDEVVDRFVEKSAENGMDVFRVFD----AL 120 (499)
T ss_pred HHHHCCCHHHHHHHHHHHC--CCCCEE--EEECCCC-------CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC----CC
T ss_conf 9874769899999999867--797323--1313355-------0564258879999999999976998899724----44
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 55445421576537999999999730144798613327100-11431001365446289999999999999962897352
Q gi|255764463|r 96 RNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT-IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA 174 (337)
Q Consensus 96 Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT-~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337)
|.-.=+..+++.+|+.-. .+-.|+| || +.- -|++.+.++|....++|||.||
T Consensus 121 ---------Ndv~Nm~~ai~~vk~~G~----~~q~~i~-yt~sPv-------------ht~~yy~~~ak~l~~~G~d~i~ 173 (499)
T PRK12330 121 ---------NDLRNLETSIKAVKKTGK----HAQGTIC-YTVSPI-------------HTTEGFVEQAKRLLDMGCDSIC 173 (499)
T ss_pred ---------CCHHHHHHHHHHHHHCCC----EEEEEEE-EECCCC-------------CCHHHHHHHHHHHHHCCCCEEE
T ss_conf ---------457778999999997188----5899999-605887-------------7899999999999975999899
Q ss_pred CCCCCC--------CHHHHHHHHH--H----HCCC--CCCCEECHHHHHHHHHHCCHHHHHHCC-CCCCCCCCCCCCCCC
Q ss_conf 466767--------7999999999--8----7788--577300336664354301016753102-446777744315721
Q gi|255764463|r 175 PSEMMD--------GRVQEIRKKL--D----SHGH--INVGIMPYVAKFNSSFYGPYRDAISTR-DLLKGDKKTYYLDPA 237 (337)
Q Consensus 175 PSdMMD--------GrV~aIR~~L--d----~~g~--~~~~ImsYsaKfaS~fYgPFRdA~~S~-p~~~gdr~sYQmd~~ 237 (337)
=-||=- --|++||+++ | -|.+ ...++++|-+ -.==|- |.++.+ ..+.| -+=|=+..
T Consensus 174 IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~---AieAGv--DivD~A~~~~s~--gtsqp~~~ 246 (499)
T PRK12330 174 IKDMAALLKPQPAYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMK---AIEAGV--DVVDTAISSMSL--GPGHNPTE 246 (499)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH---HHHCCC--CEECCCCCCCCC--CCCCCCHH
T ss_conf 84753467889999999999986389983798517887469999999---998499--887244543237--98899799
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-------CCEEEEECCH-HHH-HHHHHHHCCCCC-HHHHH
Q ss_conf 1478898888766408987995531145899999996249-------9899993461-899-999999888978-89999
Q gi|255764463|r 238 NVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG-------LPTFAYQVSG-EYA-MIKAASLQGWIN-KNDAM 307 (337)
Q Consensus 238 n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~-------~P~~aYqVSG-EYa-mi~~a~~~g~~d-~~~~~ 307 (337)
.--.+++....|. |-|+-.+.+.-.|+.-|+..-..|. .-+..+|+-| -|+ +...+.++|..| +++++
T Consensus 247 s~va~L~~t~~d~--~ld~~~l~~i~~y~~~vr~~Y~~fe~~~~~~d~~v~~~q~PGGm~sNl~~Ql~~~g~~dr~~eVl 324 (499)
T PRK12330 247 SLVEMLEGTGYTT--KLDMDRLLKIKDHFAKVRPRYKEFLSKITGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMKEVL 324 (499)
T ss_pred HHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999985789889--97999999999999999999975046676788635038895668999999999778476799999
Q ss_pred HHHHHHHHHHCCCEEEECH
Q ss_conf 9999999772699998201
Q gi|255764463|r 308 MESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 308 ~E~l~~~kRAGAd~IitY~ 326 (337)
-|.-..-+.-|-=..+|=+
T Consensus 325 ~e~~~Vr~~lG~p~lVTP~ 343 (499)
T PRK12330 325 EEVPRVRKDAGYPPLVTPS 343 (499)
T ss_pred HHHHHHHHHCCCCCEECCH
T ss_conf 9999999966998646838
No 27
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=94.24 E-value=0.35 Score=29.24 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999999962897352466767799999999987788577300336664354301016753102446777744
Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKT 231 (337)
Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~s 231 (337)
-.|.+.+++++-.++..|.|+|- |.++..+-+-+.+.-.+.-+ .+|+.-+-.-.|-|+-
T Consensus 152 Gls~~~~a~~~~e~~~GGvDfiK----------------DDE~l~~q~~~p~~eRv~~~-----~~ai~~a~~eTG~~~~ 210 (411)
T PRK09549 152 GRDIGYLKEQLRDQAIGGVDIVK----------------DDEILFENALTPLEKRIVSG-----KEVLQEVYETTGHKTL 210 (411)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCE
T ss_conf 89989999999998645865145----------------86456797778899999999-----9999999998588665
Q ss_pred CCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH--HCCCCEEE-EECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 31572114-78898888766408987995531145899999996--24998999-9346189999999988897889999
Q gi|255764463|r 232 YYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE--KFGLPTFA-YQVSGEYAMIKAASLQGWINKNDAM 307 (337)
Q Consensus 232 YQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~--~~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~~ 307 (337)
|-.|.... .|-++-+..=.+.|++++||-+...=++.++.+++ .+.+|+.+ ...+|-|. . .-..|+ +.. ++
T Consensus 211 ya~NiT~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~~~~~L~~~~~~~lpI~aHrA~~ga~t--r-~p~~Gi-s~~-~~ 285 (411)
T PRK09549 211 YAVNLTGRTFELKENAKRAVELGADALLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYT--A-SKLYGI-SSP-LL 285 (411)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCEEE--C-CCCCCC-CHH-HH
T ss_conf 998658897999999999998599889996553639999999847788946763135441220--4-865651-299-99
Q ss_pred HHHHHHHHHHCCCEEEE
Q ss_conf 99999997726999982
Q gi|255764463|r 308 MESLLAFKRAGCDGIFT 324 (337)
Q Consensus 308 ~E~l~~~kRAGAd~Iit 324 (337)
+ -.-.+-||||.++.
T Consensus 286 l--~KL~RLaGaD~~~~ 300 (411)
T PRK09549 286 L--GKLLRYAGADFSLF 300 (411)
T ss_pred H--HHHHHHHCCCEEEC
T ss_conf 9--99999908884432
No 28
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=94.22 E-value=0.59 Score=27.70 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=21.5
Q ss_pred CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 4798613327100114310013654462899999999999999628973524
Q gi|255764463|r 124 IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 124 l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
|-|+.-+-|-|.+.|---|.-..|+ +++.-..|-+.|..+.+|||..|--
T Consensus 132 IPV~gHiGL~PQ~~~~~GG~r~qGk--~~~ea~~l~~dA~~le~AGa~~ivl 181 (261)
T pfam02548 132 IPVMGHIGLTPQSVNQLGGYKVQGR--TEEEAEQLLEDAKALEEAGAFALVL 181 (261)
T ss_pred CCEEEEECCCCHHCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9765342367401123688510259--9999999999999998468748999
No 29
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=94.19 E-value=0.09 Score=33.20 Aligned_cols=146 Identities=24% Similarity=0.314 Sum_probs=87.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEECCCCCHHH
Q ss_conf 786328899999999999988893676330256334554454215765379999999997301---44798613327100
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP---NIGIITDVALDPFT 136 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp---dl~vi~DVcLc~YT 136 (337)
++=|-+|.|++.+.++++.+.|++-|+|=|+..|+.|-+-.|-. ..-.-+|+||.+|| ++-|=+ +|
T Consensus 31 ~~~Y~Ls~eEI~~Kv~ea~~~G~tE~~iQGGlnP~~~~nGssl~-----yy~~l~~~Ik~~~pPyG~~hiHa------fS 99 (331)
T TIGR00423 31 KDAYVLSLEEILRKVKEAVAKGATEICIQGGLNPQLDINGSSLE-----YYEELFRAIKQEFPPYGDVHIHA------FS 99 (331)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH-----HHHHHHHHHHHCCCCCCCEEEEC------CC
T ss_conf 88814077999999999997198278852342788764541499-----99999999974178965247614------68
Q ss_pred CCCCCCCC-CCCCCCH-HHHHHHHHHHHHH-HHHCCC--------CEEEC-----------------------CCCCCCH
Q ss_conf 11431001-3654462-8999999999999-996289--------73524-----------------------6676779
Q gi|255764463|r 137 IHGHDGIL-CDGEIVN-DETIELISHAAVI-QADAGA--------DIIAP-----------------------SEMMDGR 182 (337)
Q Consensus 137 ~hGHcGi~-~~g~IdN-D~Tl~~L~k~Al~-~A~AGa--------DivAP-----------------------SdMMDGr 182 (337)
.-==. .+ ++....- .+-|+.|-+.-|. .==.|| ++||| +-||=|.
T Consensus 100 p~Ev~-f~A~~~~~~~e~EvL~~LK~aGL~SmPGtgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~~GiptTATMMfGH 178 (331)
T TIGR00423 100 PMEVY-FLAKNEGLSIEKEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGH 178 (331)
T ss_pred HHHHH-HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCC
T ss_conf 68999-99986189788999999888503567776226530335875477988727899999999866696210112355
Q ss_pred HH----------HHHHH------HHHCC-CCCCCEECHHHHHHH-HHHCCHHH
Q ss_conf 99----------99999------98778-857730033666435-43010167
Q gi|255764463|r 183 VQ----------EIRKK------LDSHG-HINVGIMPYVAKFNS-SFYGPYRD 217 (337)
Q Consensus 183 V~----------aIR~~------Ld~~g-~~~~~ImsYsaKfaS-~fYgPFRd 217 (337)
|. -||+- =++.| |+.---|+|--+.+- ..+++.|+
T Consensus 179 ve~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~ 231 (331)
T TIGR00423 179 VEEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRK 231 (331)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 27678899999999875170023352277321014677888777111400237
No 30
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=93.93 E-value=0.12 Score=32.32 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 99999999730144798613327100114310013654462899999999999999628973524667677999999999
Q gi|255764463|r 111 NEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKL 190 (337)
Q Consensus 111 ~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~L 190 (337)
.++|++||+.|||-.|++|.= .++.|. --+-..++||||+|.=+.-.|-. .|++++
T Consensus 214 ~~aV~~iRe~fPd~~IvADlK-----------TmDaG~-----------lEa~mAa~AGADivtVlG~A~~s--TI~~ai 269 (392)
T PRK13307 214 LEVISKIREVRPDAFIVADLK-----------TLDTGN-----------LEARMAADATADAVVISGLAPIS--TIEKAI 269 (392)
T ss_pred HHHHHHHHHHCCCCEEEEEEE-----------CCCCCH-----------HHHHHHHHCCCCEEEEECCCCHH--HHHHHH
T ss_conf 899999998789988998542-----------035426-----------88888887599889995679878--999999
Q ss_pred HHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-------H
Q ss_conf 877885773003366643543010167531024467777443157211478898888766408987995531-------1
Q gi|255764463|r 191 DSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG-------L 263 (337)
Q Consensus 191 d~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa-------~ 263 (337)
.+..-..+.+|- | -++..|.-+-.+|. +-|.|++-+--| .
T Consensus 270 keA~k~G~~v~v-------------------------D----lInV~dpv~ra~eL----klg~DiI~lH~giD~Q~~~~ 316 (392)
T PRK13307 270 HEAQKTGIYSIL-------------------------D----MLNVEDPVKLLESL----KVKPDVVELHRGIDEEGTEH 316 (392)
T ss_pred HHHHHCCCEEEE-------------------------E----ECCCCCHHHHHHHH----CCCCCEEEEEECCCHHHCCC
T ss_conf 999970979999-------------------------8----34788889999984----44698899985412640368
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 45899999996249989999346189999999988897889999999999977269999820
Q gi|255764463|r 264 PYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 264 ~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
+..|+.+..+..-+.|+++ +|-++. |+.-....+|||++|-=
T Consensus 317 ~~~~l~~i~~~~~~~~VAV---------------AGGI~~-----et~~~~~~~gadIvIVG 358 (392)
T PRK13307 317 AWGNIPEIKKAAGKILVAV---------------AGGVRV-----EKVEEALKAGADILVVG 358 (392)
T ss_pred CHHHHHHHHHHCCCEEEEE---------------ECCCCH-----HHHHHHHHCCCCEEEEC
T ss_conf 7456999997426805999---------------778888-----88999984699899989
No 31
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=93.81 E-value=0.53 Score=28.00 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999999962897352466767799999999987788577300336664354301016753102446777744
Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKT 231 (337)
Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~s 231 (337)
-.|.+.+++++-.++..|.|+|- |.++..+-+-+.+.-.+.-+ .+|++-+..-.|-|+-
T Consensus 151 Gls~~~~a~~~~e~~~GG~DfIK----------------DDE~l~~q~~~p~~eRv~~~-----~~ai~~a~~eTG~~~~ 209 (407)
T TIGR03332 151 GRDLGYLKEQLRQQALGGVDLVK----------------DDEILFETGLAPFEKRITEG-----KEVLQEVYEQTGHKTL 209 (407)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCE
T ss_conf 79989999999999605776242----------------75556798789899999999-----9999999998598546
Q ss_pred CCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH--CCCCEEE-EECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 31572114-788988887664089879955311458999999962--4998999-9346189999999988897889999
Q gi|255764463|r 232 YYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK--FGLPTFA-YQVSGEYAMIKAASLQGWINKNDAM 307 (337)
Q Consensus 232 YQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~--~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~~ 307 (337)
|-.|.... .|-++.+..=.+.|+.++||-|...=++.++.+++. +.+|+.+ ...+|-|. ..-..|+ +.. ++
T Consensus 210 ya~NiT~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~a~~~L~~~~~~~lpI~aHra~~ga~~---r~~~~Gi-s~~-~~ 284 (407)
T TIGR03332 210 YAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYT---SSPFYGV-SHS-LL 284 (407)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEE---CCCCCCC-CHH-HH
T ss_conf 998538898999999999997599889995765559999999847898843887314433663---2777774-299-99
Q ss_pred HHHHHHHHHHCCCEEE
Q ss_conf 9999999772699998
Q gi|255764463|r 308 MESLLAFKRAGCDGIF 323 (337)
Q Consensus 308 ~E~l~~~kRAGAd~Ii 323 (337)
+ -.-.+-||||.++
T Consensus 285 l--~Kl~RLaGaD~~~ 298 (407)
T TIGR03332 285 L--GKLLRYAGADFSL 298 (407)
T ss_pred H--HHHHHHCCCCEEE
T ss_conf 9--9999981989776
No 32
>PRK06256 biotin synthase; Validated
Probab=93.75 E-value=0.72 Score=27.11 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=65.7
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 878632---88999999999999888936763302563345544542157653799999999973014479861332710
Q gi|255764463|r 59 MPDVMR---MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF 135 (337)
Q Consensus 59 MPGv~R---~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y 135 (337)
=.++.+ .+.+.++++++.+.+.|++.|.|.-.. +++.+ .+-.-++.+|+.||+.++ +- +|++
T Consensus 81 ~~~~~~y~ll~~eeI~~~a~~a~~~G~~~~~lvtsg----~~~~~----~~~e~v~~~i~~Ik~~~~-l~----i~~s-- 145 (325)
T PRK06256 81 SSPIYRYAWLDIEEIVEAAKEAIENGAGRFCIVASG----RGPSG----REVDQVIEAVKAIKEETD-LE----ICAC-- 145 (325)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC----CCCCH----HHHHHHHHHHHHHHHCCC-EE----EEEE--
T ss_conf 899741278999999999999998699889998604----58976----789999999999862289-36----8873--
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--------------EECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0114310013654462899999999999999628973--------------52466767799999999987788
Q gi|255764463|r 136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI--------------IAPSEMMDGRVQEIRKKLDSHGH 195 (337)
Q Consensus 136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--------------vAPSdMMDGrV~aIR~~Ld~~g~ 195 (337)
.|++. .+++..+.+||+|- |+|+.--|-|+..+|.+ -+.|+
T Consensus 146 -----lG~l~-------------~e~~~~LkeAGvd~y~~nlETs~~~f~~i~~tht~~~Rl~ti~~a-~~aGi 200 (325)
T PRK06256 146 -----LGLLT-------------EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRVDTCEMV-KAAGI 200 (325)
T ss_pred -----CCCCC-------------HHHHHHHHHCCCCEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHH-HHCCC
T ss_conf -----48899-------------999999998699888666440687638868998899999999999-98599
No 33
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.34 E-value=0.83 Score=26.66 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=47.5
Q ss_pred EECCCCC-CCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 1048887-8632889999999999998-8893676330256334554454215765379999999997301447986133
Q gi|255764463|r 54 ESINSMP-DVMRMSIDVAVEKIKQVAD-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 54 ~~I~SMP-Gv~R~Sid~L~~eie~~~~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc 131 (337)
--|.-|| |-|+.|.+..++-+.++++ .|..+|-|=++. + +...|+.|.+. .|-||.-+-
T Consensus 80 ~vv~DmPf~sy~~s~~~a~~nA~rl~ke~gadaVKlEgg~--~---------------~~~~i~~l~~~--GIPV~gHiG 140 (266)
T PRK00311 80 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGE--E---------------LAETIRRLVER--GIPVMGHLG 140 (266)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC--C---------------HHHHHHHHHHC--CCCEEEEEC
T ss_conf 3995798764689999999999999985699989978883--3---------------67999999987--997665415
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 27100114310013654462899999999999999628973524
Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
|-|-+.+---|.-..|+ +.+..+.|-+.|..+.+|||..|--
T Consensus 141 L~PQ~~~~~GG~r~qGk--t~~ea~~l~~dA~~le~AGaf~ivl 182 (266)
T PRK00311 141 LTPQSVNVLGGYKVQGR--DEEAAEQLLEDAKALEEAGAFALVL 182 (266)
T ss_pred CCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 76500113688602259--9999999999999998479549999
No 34
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=93.31 E-value=0.84 Score=26.63 Aligned_cols=227 Identities=19% Similarity=0.228 Sum_probs=122.0
Q ss_pred CEEEECCCCCEEECCCCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 16667589881104888786328899999----99999998889367633025633455445421576537999999999
Q gi|255764463|r 43 PIFLTSGEKTVESINSMPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK 118 (337)
Q Consensus 43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK 118 (337)
+.||--.. -|+..++..-..+.+.+. ++++-+.+-|+-.+++= +=.+ -.=+..|++.+|
T Consensus 100 ~~~VAGsI---GP~~~~~~~~~~~~~e~~~~f~eQ~~~L~e~GvD~illE--T~~d------------l~E~~~Al~aar 162 (608)
T PRK08645 100 DTYILGTI---GPIRGDGPQGDLSLEEILEEFREQIDALLEEGVDGLLLE--TFYD------------LEELLEALKAAR 162 (608)
T ss_pred CEEEEEEC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE--HHCC------------HHHHHHHHHHHH
T ss_conf 84999953---887889999999999999999999999975799899986--3059------------999999999999
Q ss_pred HHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCHHHHHHHHHHHCCCC
Q ss_conf 7301447986133271001143100136544628999999999999996289735246676--77999999999877885
Q gi|255764463|r 119 KNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM--DGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 119 ~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM--DGrV~aIR~~Ld~~g~~ 196 (337)
+.. ++-||+-+.+++ .|.+.+| .+++ +.+......|+|+|.-..-. +.....+++. ....
T Consensus 163 ~~~-~lPvi~s~t~~~------~G~t~~G-----~~~~---~a~~~l~~~gad~VG~NC~~GP~~m~~~l~~l---~~~~ 224 (608)
T PRK08645 163 KKT-DLPIIAQVAFHE------DGVTQNG-----TSLE---EALKQLVALGADVVGLNCGLGPYHMLEALKRI---ELPA 224 (608)
T ss_pred HHC-CCCEEEEEEECC------CCCCCCC-----CCHH---HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH---HHHC
T ss_conf 756-997999999889------9808999-----9799---99999862899889887978999999999998---7425
Q ss_pred CCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC
Q ss_conf 77300336664354301016753102446777744315721147889888876640898799553114589999999624
Q gi|255764463|r 197 NVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF 276 (337)
Q Consensus 197 ~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~ 276 (337)
+.+|..|.- + .-|...+.|-.|...|....+-.++. +++||.+|====|. -=+-|+.+++..
T Consensus 225 ~~pl~v~PN-------------A-GlP~~~~gr~~Y~~tPe~Fa~~a~~~---~~~Ga~iIGGCCGT-TPeHIraia~al 286 (608)
T PRK08645 225 DAPLSAYPN-------------A-GLPEYVEGRYVYSANPEYFAEYAREF---VEEGVRLIGGCCGT-TPEHIRAMKEAL 286 (608)
T ss_pred CCEEEEECC-------------C-CCCCCCCCEEECCCCHHHHHHHHHHH---HHCCCCEEEECCCC-CHHHHHHHHHHH
T ss_conf 981899788-------------9-99887898302789999999999999---98599799757799-999999999984
Q ss_pred --CCCEEEEEC-------------CHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf --998999934-------------618999999998889-----------78899999999999772699998
Q gi|255764463|r 277 --GLPTFAYQV-------------SGEYAMIKAASLQGW-----------INKNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 277 --~~P~~aYqV-------------SGEYami~~a~~~g~-----------~d~~~~~~E~l~~~kRAGAd~Ii 323 (337)
..|+..-+| ..+-.-+..-..++. +|. +-++|--..+|.||+|.|-
T Consensus 287 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vEldpP~~~d~-~~~~~~a~~l~~~Gvdai~ 358 (608)
T PRK08645 287 RGLKPVVEKEVIPIPKKEPFHPKPSKVKSSLLEKVKKKFTVIVELDPPKGLDT-DKFLEGARALKEAGVDAIT 358 (608)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEE
T ss_conf 47899775555666666667887766777589996379679999549999987-8999999999876997897
No 35
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.30 E-value=0.85 Score=26.62 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 44798613327100114310013654462899999999999999628973524667677999999999877885773003
Q gi|255764463|r 123 NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 123 dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
.|-|+.-+-|-|-+.|---|.-..|+ +++.-..|-+.|..+.+|||..+---.+=.---+.|.+. .++|..+
T Consensus 127 GIPV~gHiGLtPQ~~~~~Gg~k~qGk--~~~ea~~l~~dA~~le~AGaf~ivlE~vp~~la~~It~~------~~IPtIG 198 (254)
T cd06557 127 GIPVMGHIGLTPQSVNQLGGYKVQGK--TEEEAERLLEDALALEEAGAFALVLECVPAELAKEITEA------LSIPTIG 198 (254)
T ss_pred CCCEEEEECCCCHHCCCCCCCEEECC--CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC------CCCCEEE
T ss_conf 99766541577401121687532249--999999999999999847955999956709999999857------8988894
Q ss_pred H-HHHHHHHHHCCHHHHHHCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 3-66643543010167531024467-777443157211478898888766408
Q gi|255764463|r 203 Y-VAKFNSSFYGPYRDAISTRDLLK-GDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 203 Y-saKfaS~fYgPFRdA~~S~p~~~-gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
- |.+++..=+==+-|.+|-.+.|. .-.|.|----....+|+++-..|+..|
T Consensus 199 IGAG~~cDGQvLV~~DlLG~~~~~~PkFvK~y~~~~~~~~~Av~~y~~dVk~~ 251 (254)
T cd06557 199 IGAGPDCDGQVLVWHDMLGLSPGFKPKFVKRYADLGELIREAVKAYVEEVKSG 251 (254)
T ss_pred CCCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56789987037847464278989899639888637999999999999999759
No 36
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=93.12 E-value=0.9 Score=26.44 Aligned_cols=96 Identities=25% Similarity=0.394 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCC
Q ss_conf 99999999998889367633025633455445421576537999999999730144798613327100114310013654
Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGE 148 (337)
Q Consensus 69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~ 148 (337)
.-.+.++.+++.|+..+. |+.. .| ..--+..+|+.||+.||++-||+ |
T Consensus 223 ~~~eRa~~Lv~aGvDviv----IDtA----hG-----hs~~vi~~ik~ik~~~p~~~iIa------------------G- 270 (467)
T pfam00478 223 DDLERAEALVEAGVDVIV----IDSA----HG-----HSEYVLEMIKWIKKKYPDLDVIA------------------G- 270 (467)
T ss_pred HHHHHHHHHHHCCCCEEE----EECC----CC-----CCHHHHHHHHHHHHCCCCCCEEE------------------E-
T ss_conf 599999999876998899----7344----54-----41889999999874078773785------------------1-
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEE----ECCCCCC---------CHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 4628999999999999996289735----2466767---------7999999999877885773003
Q gi|255764463|r 149 IVNDETIELISHAAVIQADAGADII----APSEMMD---------GRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 149 IdND~Tl~~L~k~Al~~A~AGaDiv----APSdMMD---------GrV~aIR~~Ld~~g~~~~~Ims 202 (337)
|=. -.++|..+.+||||.| .|-.+-- .|..||-+.-+...-.+++|.+
T Consensus 271 --NVa----T~e~a~~Li~aGAD~vKVGiGpGSiCTTR~v~GvG~PQ~tAv~~~a~~a~~~~vpiIA 331 (467)
T pfam00478 271 --NVV----TAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQLTAVYEVADAARKLGVPVIA 331 (467)
T ss_pred --EEC----CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf --005----8999999997077757755668865656420366775087999999998656987994
No 37
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.95 E-value=0.87 Score=26.53 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 67677999999999877885773003366643543010167531024467777443157211478898888766408987
Q gi|255764463|r 177 EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADM 256 (337)
Q Consensus 177 dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~ 256 (337)
+=|=.|++++|++-+.. .+.-|.+-+--|... ...-.||++-.....+-|||+
T Consensus 124 ~e~~~ki~aa~~a~~~~--~d~~I~ARTDa~~~~-------------------------~~~~~eai~R~~aY~~AGAD~ 176 (243)
T cd00377 124 EEFVAKIKAARDARDDL--PDFVIIARTDALLAG-------------------------EEGLDEAIERAKAYAEAGADG 176 (243)
T ss_pred HHHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHC-------------------------CCCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999988636--881687542345405-------------------------788999999999999829989
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 9955311458999999962499899993461
Q gi|255764463|r 257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSG 287 (337)
Q Consensus 257 lMVKPa~~yLDii~~~k~~~~~P~~aYqVSG 287 (337)
+++- +..-.|-|+.+.+..+.|+.+-.+.|
T Consensus 177 ifi~-~~~~~~ei~~~~~~~~~Pl~~~~~~~ 206 (243)
T cd00377 177 IFVE-GLKDPEEIRAFAEAPDVPLNVNMTPG 206 (243)
T ss_pred EEEC-CCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9945-89999999999973699989995788
No 38
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.92 E-value=0.96 Score=26.25 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=75.9
Q ss_pred HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 88999863477888773311666758988110488878632889999999999998889367633025633455445421
Q gi|255764463|r 24 NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHI 103 (337)
Q Consensus 24 ~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA 103 (337)
..+|++++-+. .|+.+.=..+-- +...+.+.+++..+.|+-++-|==.+.+.+....+...
T Consensus 59 ~~~~~I~~a~~-------lPv~aD~d~GyG------------~~~~v~~tv~~~~~aG~agi~IED~~~~k~~~~~~~~~ 119 (243)
T cd00377 59 AAVRRIARAVD-------LPVIADADTGYG------------NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKV 119 (243)
T ss_pred HHHHHHHHHCC-------CCEEEECCCCCC------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 99999996169-------988998766778------------67999999999997499679865878876566657632
Q ss_pred CCCCCHHHHHHHHHHHHH---CCCEEEE--CCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 576537999999999730---1447986--13327100114310013654462899999999999999628973524667
Q gi|255764463|r 104 IDPDNLINEGICAIKKNI---PNIGIIT--DVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEM 178 (337)
Q Consensus 104 ~n~dglv~rAIr~IK~~f---pdl~vi~--DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM 178 (337)
+-+-.-.+.-|+++++.. ||++|++ |..+-. ...++.-.+-+..|++||||+|-+-..
T Consensus 120 l~~~~e~~~ki~aa~~a~~~~~d~~I~ARTDa~~~~-----------------~~~~~eai~R~~aY~~AGAD~ifi~~~ 182 (243)
T cd00377 120 LVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAG-----------------EEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHC-----------------CCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 306999999999999988636881687542345405-----------------788999999999999829989994589
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67799999999987788577300
Q gi|255764463|r 179 MDGRVQEIRKKLDSHGHINVGIM 201 (337)
Q Consensus 179 MDGrV~aIR~~Ld~~g~~~~~Im 201 (337)
- ....|++..+. .+++++
T Consensus 183 ~--~~~ei~~~~~~---~~~Pl~ 200 (243)
T cd00377 183 K--DPEEIRAFAEA---PDVPLN 200 (243)
T ss_pred C--CHHHHHHHHHH---CCCCEE
T ss_conf 9--99999999973---699989
No 39
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=92.51 E-value=1.1 Score=25.89 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999999628973524667677999999999877885773003366643543010167531024467777443
Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY 232 (337)
Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sY 232 (337)
.|-+.+++++-..+..|.|+|- |.++..+-+-+.+.-.+.-+ .+|+.-+-.-.|.++-|
T Consensus 157 Ls~~~~a~~~ye~~~GG~D~iK----------------DDE~l~~q~f~p~~eRv~~~-----~~a~~~a~~eTG~~~~y 215 (412)
T TIGR03326 157 LSTEEHAKVAYELWSGGVDLLK----------------DDENLTSQPFNRFEERVEKL-----YKVRDKVEAETGERKEY 215 (412)
T ss_pred CCHHHHHHHHHHHHHCCCCCCC----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCEE
T ss_conf 9979999999999825777312----------------66456798876589999999-----99999999875874258
Q ss_pred CCCCCHH-HHHHHHHHHHHHCCCCEEEECC---CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 1572114-7889888876640898799553---11458999999962499899993461899999999888978899999
Q gi|255764463|r 233 YLDPANV-QEAIREASIDIQESADMLLVKP---GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMM 308 (337)
Q Consensus 233 Qmd~~n~-~eA~~e~~~D~~EGAD~lMVKP---a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~ 308 (337)
-.|.... .|-++-++.=.+.|+.++||-+ |.+-|.-+++..+...+|+.+ |-.|-=++-. ....|+ +. .++
T Consensus 216 ~~NiT~~~~em~~ra~~a~e~G~~~vMv~~~~~G~sal~~lr~~~~d~~l~iha-HrA~~ga~~r-~p~~Gi-s~--~vl 290 (412)
T TIGR03326 216 LANITAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHA-HRAMHAAFTR-NPKHGI-SM--FAL 290 (412)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEE-CCCCCHHHHC-CCCCCC-CH--HHH
T ss_conf 864378999999999999983998797436324635999999862234977984-3664044443-876773-69--999
Q ss_pred HHHHHHHHHCCCEEEEC
Q ss_conf 99999977269999820
Q gi|255764463|r 309 ESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 309 E~l~~~kRAGAd~IitY 325 (337)
-...+-||+|.|.++
T Consensus 291 --~Kl~RLaGaD~ih~~ 305 (412)
T TIGR03326 291 --AKLYRLIGVDQLHTG 305 (412)
T ss_pred --HHHHHHCCCCEEECC
T ss_conf --999998398824227
No 40
>PRK05926 hypothetical protein; Provisional
Probab=92.32 E-value=0.49 Score=28.21 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 8887863288999999999999888936763302563345544542157653799999999973014479
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI 126 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v 126 (337)
+.=|+-|.+|+|.+.+.+++ .+.|+.-|.+-+++.++..=+ .....+|.||+.||++-|
T Consensus 92 ~~~~~aY~ls~eei~~~v~e-~~~g~tEv~i~GG~hP~l~~~----------yY~~l~~~ik~~~P~v~i 150 (371)
T PRK05926 92 PGDPKGWFYTPDQLIQSIQE-IKSPITETHIVAGCFPSCNLA----------YYEELFSKIKENFPDIHI 150 (371)
T ss_pred CCCCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCCCCCCHH----------HHHHHHHHHHHHCCCCCC
T ss_conf 99976523899999999999-875996899717889899869----------999999999975898741
No 41
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=91.67 E-value=1.3 Score=25.25 Aligned_cols=213 Identities=18% Similarity=0.167 Sum_probs=129.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf 87863288999999999999888936763302563345544542157653799999999973014479861332710011
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337)
+=|..+|.=|-+-+.|++++++|+-=|=+| + |+|+.==+++||+++|+.-.|.. -.+|| ||..
T Consensus 82 LlGYRHYADDVVe~FV~~a~~NG~DVFRiF----D---------ALND~RNl~~ai~a~Kk~g~dHv---Qg~iS-YTtS 144 (616)
T TIGR01108 82 LLGYRHYADDVVEAFVKKAVENGLDVFRIF----D---------ALNDPRNLQKAIEAAKKHGADHV---QGAIS-YTTS 144 (616)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEE----C---------CCCCHHHHHHHHHHHHHHCCCEE---EEEEE-CCCC
T ss_conf 234415843689999999997598089951----2---------45887789999999997389789---99971-2468
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--------CHHHHHHHHHH-HCC--CCC-CCEECHHHH
Q ss_conf 431001365446289999999999999962897352466767--------79999999998-778--857-730033666
Q gi|255764463|r 139 GHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD--------GRVQEIRKKLD-SHG--HIN-VGIMPYVAK 206 (337)
Q Consensus 139 GHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD--------GrV~aIR~~Ld-~~g--~~~-~~ImsYsaK 206 (337)
== -|++.+.+.|--+|+-|+|.||==||== -=|.+|++..+ -.= |++ |.=||--|-
T Consensus 145 Pv------------HTl~~yl~la~~L~~~G~DSI~IKDMaGlLTP~~AYELV~alK~~~~n~pvhLH~H~TtGmA~~Al 212 (616)
T TIGR01108 145 PV------------HTLEKYLELAKELLEMGVDSICIKDMAGLLTPKVAYELVSALKKEFGNLPVHLHSHATTGMAEMAL 212 (616)
T ss_pred CH------------HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 43------------678889999999998188605520200464415899999999742397468863247233799999
Q ss_pred HHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCEEEECCCHHHHHHHHHHHHHC-C-----
Q ss_conf 43543010-167531024467777443157211478898888766--40898799553114589999999624-9-----
Q gi|255764463|r 207 FNSSFYGP-YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDI--QESADMLLVKPGLPYLDVCFRIKEKF-G----- 277 (337)
Q Consensus 207 faS~fYgP-FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~--~EGAD~lMVKPa~~yLDii~~~k~~~-~----- 277 (337)
+.-.-=|= +=|-|=| +|+ .+|=+|| .|+|-++..+. +.|-|+-..|-.-.|.-=||+==..| .
T Consensus 213 lkA~EAG~d~iDTAis--S~S---~gtSHPp---tE~lv~~L~~~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~~~ 284 (616)
T TIGR01108 213 LKAIEAGADMIDTAIS--SMS---GGTSHPP---TETLVAALRGTGYDTGLDIELLLEIADYFRKVRKKYSQFLESQLKG 284 (616)
T ss_pred HHHHHCCCCCCHHCCC--CCC---CCCCCCH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9888707880020055--234---7888874---7999999705787431027999999999999999998860767778
Q ss_pred --CCEEEEECCHH-HH-HHHHHHHCCCCCHHHHHH
Q ss_conf --98999934618-99-999999888978899999
Q gi|255764463|r 278 --LPTFAYQVSGE-YA-MIKAASLQGWINKNDAMM 308 (337)
Q Consensus 278 --~P~~aYqVSGE-Ya-mi~~a~~~g~~d~~~~~~ 308 (337)
.-|-.|||=|= |+ .+.-.=+++..|.=+.++
T Consensus 285 ~D~RiLv~QvPGGM~SNL~~QLkEQna~DkLd~VL 319 (616)
T TIGR01108 285 PDSRILVSQVPGGMLSNLESQLKEQNALDKLDEVL 319 (616)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88448997368806889999998623755788887
No 42
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=91.34 E-value=1.5 Score=25.02 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=55.2
Q ss_pred EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 666758988110488878632889999999999998889367633025633455-4454215765379999999997301
Q gi|255764463|r 44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDNLINEGICAIKKNIP 122 (337)
Q Consensus 44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dglv~rAIr~IK~~fp 122 (337)
++|+--.|.-.+.+++--.-=++.+++.+++.++++.|-..+-+. -+| ++|+.+++++ ...+++..|++..|
T Consensus 2 ~iIt~A~~Ga~~~k~~~P~lP~Tp~Eia~~A~~c~~AGAsivH~H------vRd~~dG~~s~d~~-~y~e~i~~Ir~~~p 74 (274)
T pfam05853 2 VIITCAPTGAIHTPSDSPALPVTPEEIAEEAVAAAEAGAAIVHLH------VRDPEDGRPSQDPE-LFREVLERIREAVP 74 (274)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE------ECCCCCCCCCCCHH-HHHHHHHHHHHHCC
T ss_conf 699990689968723399998998999999999997087389988------44788899068899-99999999998789
Q ss_pred CCEEEE
Q ss_conf 447986
Q gi|255764463|r 123 NIGIIT 128 (337)
Q Consensus 123 dl~vi~ 128 (337)
|++|-.
T Consensus 75 d~ii~~ 80 (274)
T pfam05853 75 DVIINL 80 (274)
T ss_pred CCEEEE
T ss_conf 968994
No 43
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=91.30 E-value=0.6 Score=27.65 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
..+++..++.+++..+. ..++=-++| -.|.+ |. ++|+.||+.|||-.|.+|.=-
T Consensus 12 ~~~l~~Ai~~a~~v~~~---~diiEvGTp-Lik~e---------G~--~aV~~lr~~~pd~~IvAD~Kt----------- 65 (217)
T COG0269 12 LLDLEEAIEIAEEVADY---VDIIEVGTP-LIKAE---------GM--RAVRALRELFPDKIIVADLKT----------- 65 (217)
T ss_pred CCCHHHHHHHHHHHHHC---CEEEEECCH-HHHHH---------HH--HHHHHHHHHCCCCEEEEEEEE-----------
T ss_conf 57799999999971221---329980769-99985---------17--999999987899868862032-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 13654462899999999999999628973524667677999999999877885773003366643543010167531024
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD 223 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p 223 (337)
.+-| ..++++ .++||||++.=|.+.|- ..|.+++....-.+
T Consensus 66 ~D~G--------~~e~~m---a~~aGAd~~tV~g~A~~--~TI~~~i~~A~~~~-------------------------- 106 (217)
T COG0269 66 ADAG--------AIEARM---AFEAGADWVTVLGAADD--ATIKKAIKVAKEYG-------------------------- 106 (217)
T ss_pred CCHH--------HHHHHH---HHHCCCCEEEEEECCCH--HHHHHHHHHHHHCC--------------------------
T ss_conf 2404--------899999---99738987999804888--99999999999839--------------------------
Q ss_pred CCCCCCCCCCCCCCHH---HHHHHHHHHHHHCCCCEEEECCC-------HHH-HHHHHHHHHHCC--CCEEEEECCHHHH
Q ss_conf 4677774431572114---78898888766408987995531-------145-899999996249--9899993461899
Q gi|255764463|r 224 LLKGDKKTYYLDPANV---QEAIREASIDIQESADMLLVKPG-------LPY-LDVCFRIKEKFG--LPTFAYQVSGEYA 290 (337)
Q Consensus 224 ~~~gdr~sYQmd~~n~---~eA~~e~~~D~~EGAD~lMVKPa-------~~y-LDii~~~k~~~~--~P~~aYqVSGEYa 290 (337)
+--|+|--|. ..+.++.. +-|.|++.+--+ ... +|.+..+|+.+. .++++
T Consensus 107 ------~~v~iDl~~~~~~~~~~~~l~---~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV-------- 169 (217)
T COG0269 107 ------KEVQIDLIGVWDPEQRAKWLK---ELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV-------- 169 (217)
T ss_pred ------CEEEEEEECCCCHHHHHHHHH---HHCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHCCCCEEEE--------
T ss_conf ------869998516899999999999---718978999704347650899417789999986236835998--------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 99999988897889999999999977269999820
Q gi|255764463|r 291 MIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 291 mi~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
+|-++. |.+.-|+-.|++++|-=
T Consensus 170 -------aGGI~~-----~~i~~~~~~~~~ivIvG 192 (217)
T COG0269 170 -------AGGITP-----EDIPLFKGIGADIVIVG 192 (217)
T ss_pred -------ECCCCH-----HHHHHHHCCCCCEEEEC
T ss_conf -------668788-----78899864899799988
No 44
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.28 E-value=1 Score=26.06 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=97.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 88878632889999999999998889367633025633455445421576537999999999730144798613327100
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
...||---++.+-+.+-+..+..-|-.+|=.=+ + .-|++||+.. ++-||
T Consensus 16 QA~~~ePl~~~~im~~mA~Aa~~gGA~giR~~~-------------------~--~dI~aIk~~v-~lPII--------- 64 (219)
T cd04729 16 QALPGEPLHSPEIMAAMALAAVQGGAVGIRANG-------------------V--EDIRAIRARV-DLPII--------- 64 (219)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-------------------H--HHHHHHHHCC-CCCEE---------
T ss_conf 189889968778999999999978963998089-------------------8--8999998328-99889---------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH---------HHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf 1143100136544628999999999999996289735246676779---------9999999987788577300336664
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR---------VQEIRKKLDSHGHINVGIMPYVAKF 207 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr---------V~aIR~~Ld~~g~~~~~ImsYsaKf 207 (337)
||++.+.-+-+.=+.-.-+-+...++|||||||--.-.--| |..||+. + +..+|+=
T Consensus 65 -----Gi~K~~~~~s~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~g~~l~~~i~~i~~~-----~-~~l~MAD---- 129 (219)
T cd04729 65 -----GLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----Y-NCLLMAD---- 129 (219)
T ss_pred -----EEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-----H-CCEEEEE----
T ss_conf -----999568899984566889999999985999999946788798997899999999998-----6-9778875----
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----------ECCCHHHHHHHHHHHHHCC
Q ss_conf 354301016753102446777744315721147889888876640898799----------5531145899999996249
Q gi|255764463|r 208 NSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL----------VKPGLPYLDVCFRIKEKFG 277 (337)
Q Consensus 208 aS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM----------VKPa~~yLDii~~~k~~~~ 277 (337)
.++..|++... +-|+|++= -++..|-+++++++++.+.
T Consensus 130 ----------------------------~st~ee~~~A~----~~G~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~~ 177 (219)
T cd04729 130 ----------------------------ISTLEEALNAA----KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG 177 (219)
T ss_pred ----------------------------CCCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf ----------------------------48899999999----8499899702145677878899987899999999759
Q ss_pred CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 989999346189999999988897889999999999977269999820
Q gi|255764463|r 278 LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 278 ~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
+|+.| .|-++....+.+.+ .+||+.++-=
T Consensus 178 ~pvIa---------------EGri~tPe~a~~a~----~~GA~aVVVG 206 (219)
T cd04729 178 IPVIA---------------EGRINSPEQAAKAL----ELGADAVVVG 206 (219)
T ss_pred CCEEE---------------ECCCCCHHHHHHHH----HCCCCEEEEC
T ss_conf 93997---------------06989999999999----8399899989
No 45
>PRK10200 putative racemase; Provisional
Probab=91.27 E-value=0.86 Score=26.58 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECC--------------------CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH
Q ss_conf 628999999999999996289735246--------------------676779999999998778857730033666435
Q gi|255764463|r 150 VNDETIELISHAAVIQADAGADIIAPS--------------------EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 (337)
Q Consensus 150 dND~Tl~~L~k~Al~~A~AGaDivAPS--------------------dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS 209 (337)
+.|...+.|.+.|..+.+||||.++=. .|.|-.+.+++ ..|+..+++|.=..-..|
T Consensus 56 ~~d~~~~~L~~~a~~Le~aGAd~i~i~cNTaH~~~d~i~~~~~iP~l~i~~~t~~~i~----~~g~~~VglLgT~~Tm~~ 131 (230)
T PRK10200 56 EWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAIA----GAGMTRVALLGTRYTMEQ 131 (230)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHH----HCCCCEEEEECCHHHHHH
T ss_conf 9653999999999999984999999647478999999997569987318999999999----759985898514566661
Q ss_pred HHH-CCHHHHHHC
Q ss_conf 430-101675310
Q gi|255764463|r 210 SFY-GPYRDAIST 221 (337)
Q Consensus 210 ~fY-gPFRdA~~S 221 (337)
.|| +.|.+..|-
T Consensus 132 ~~Y~~~l~~~~gi 144 (230)
T PRK10200 132 DFYRGRLTEQFSI 144 (230)
T ss_pred HHHHHHHHHHCCC
T ss_conf 6889999985798
No 46
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=91.01 E-value=1.3 Score=25.37 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=49.5
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 99999999888936763302563345544542157653799999999973014479861332710011431001365446
Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIV 150 (337)
Q Consensus 71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~Id 150 (337)
.+.++++.+.|+..+ +|+.++=+ +-.+...||.||+++||+-||+ |-|
T Consensus 241 ~~R~~~L~~AGvDv~----viDsshGh---------s~~vl~~ik~~k~~Yp~~~iia------------------GNV- 288 (476)
T TIGR01302 241 LERAEALVEAGVDVI----VIDSSHGH---------SIYVLDSIKKIKKTYPDLDIIA------------------GNV- 288 (476)
T ss_pred HHHHHHHHHCCCCEE----EEECCCCC---------CHHHHHHHHHHHHHCCEEEEEE------------------CCC-
T ss_conf 899999996596589----98166545---------3789999999986388057994------------------344-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 28999999999999996289735
Q gi|255764463|r 151 NDETIELISHAAVIQADAGADII 173 (337)
Q Consensus 151 ND~Tl~~L~k~Al~~A~AGaDiv 173 (337)
.-.+||-.+.+||||.|
T Consensus 289 ------aT~~~a~~LI~AgADg~ 305 (476)
T TIGR01302 289 ------ATAEQAKALIDAGADGL 305 (476)
T ss_pred ------CCHHHHHHHHHCCCCEE
T ss_conf ------11788988985288878
No 47
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=90.99 E-value=0.76 Score=26.95 Aligned_cols=221 Identities=15% Similarity=0.161 Sum_probs=125.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE-EECCCCCHHHC---
Q ss_conf 63288999999999999888936763302563345544542157653799999999973014479-86133271001---
Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI-ITDVALDPFTI--- 137 (337)
Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v-i~DVcLc~YT~--- 137 (337)
-+++|.+++.+|++.+.+.|++.|+|--+- +.+. .+-..+.++|+.||+.|+.+.| +.-.-..+|-.
T Consensus 101 R~~Ls~eEI~~E~~ai~~~G~k~ILLvtGE--~~~~-------~~~~Yi~~~v~~ik~~f~~v~iev~Pl~~eeY~~L~~ 171 (371)
T PRK09240 101 RKTLDEEEIEREMAAIKKLGFEHILLVTGE--HEAK-------VGVDYIRRALPLAREYFSSVAIEVQPLSEEEYAELVE 171 (371)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCCC-------CCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 002899999999999997695238854057--8776-------9889999999999975674079952599899999998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHH------------HHHHHHHHCCCCEEECC---CCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 1431001365446289999999------------99999996289735246---67677999999999877885773003
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELIS------------HAAVIQADAGADIIAPS---EMMDGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~------------k~Al~~A~AGaDivAPS---dMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
.|-+|+.-=.+--|.+|-+.|- ..----++||.|-|+-- +.-|-|..+.- |.
T Consensus 172 aG~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~dwr~e~~~-------------~~ 238 (371)
T PRK09240 172 LGLDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLSDWRTDALM-------------TA 238 (371)
T ss_pred CCCCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCCHHHHHHHH-------------HH
T ss_conf 59986999603259999998588998545254523788898759970361102265468999999-------------99
Q ss_pred HHHHHHHHHHCC---------HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 366643543010---------16753102446777744315721147889888876640898799553114589999999
Q gi|255764463|r 203 YVAKFNSSFYGP---------YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIK 273 (337)
Q Consensus 203 YsaKfaS~fYgP---------FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k 273 (337)
+-+.|=..-|+- .|-|.|+ ..-.|.++-++-...+....+ .+||..|+=..|
T Consensus 239 ~Ha~~L~~~y~~~~~siS~PRlrP~~g~------~~p~~~vsD~~l~q~i~a~Rl-------------~~P~~gi~lSTR 299 (371)
T PRK09240 239 LHLRYLQRKYWRARYSISFPRLRPCTGG------FEPKSIVSDRQLVQLICAFRL-------------FLPDVEISLSTR 299 (371)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHH-------------HCCCCCCEEECC
T ss_conf 9999999877998757635753368899------889865788999999999998-------------665556168647
Q ss_pred HHC-----CCCEEEEECC-------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 624-----9989999346-------1899999999888978899999999999772699998
Q gi|255764463|r 274 EKF-----GLPTFAYQVS-------GEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 274 ~~~-----~~P~~aYqVS-------GEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii 323 (337)
+.- -+|+++=|.| |-|+--....++=-++-.+.+-|....++..|=.-+.
T Consensus 300 E~~~~Rd~li~lGvT~mSAgs~T~~GGy~~~~~~~~QF~i~D~Rs~~Ev~~~l~~~Gy~Pv~ 361 (371)
T PRK09240 300 ESPEFRDNLIPLGITKMSAGSSTQPGGYADPEKELEQFEISDDRSVEEVAAALRAQGLQPVW 361 (371)
T ss_pred CCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECC
T ss_conf 89899988885256025555546887778999886665379998999999999987991031
No 48
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=90.63 E-value=1.3 Score=25.45 Aligned_cols=199 Identities=17% Similarity=0.117 Sum_probs=100.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 878632889999999999998889367633-0256334554454215765379999999997301447986133271001
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIF-PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LF-p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
.|+.. +|.+.-++-++.+.++|++.|=+. |.+.+ |+. ..++.+++.+|+.-+ .
T Consensus 6 ~~~~~-~~~e~K~~i~~~L~~~Gv~~IEvg~~~~~~--~~~-------------~~~~~~~~~~~~~~~---------~- 59 (237)
T pfam00682 6 ALGAA-FSVEEKLAIARALDEAGVDEIEVGFPFMSP--TDF-------------ESVRAIAEVLKKAKI---------Q- 59 (237)
T ss_pred CCCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHH-------------HHHHHHHHHCCCCCC---------C-
T ss_conf 99999-899999999999998498989995775897--359-------------999977650258751---------0-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH
Q ss_conf 14310013654462899999999999999628973524667677999999999877885773003366643543010167
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD 217 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd 217 (337)
++..-...+|+..++.+ ..+|+|.|.-..-..-. .+++.+...--...-.+.-+.+|+....-.
T Consensus 60 ----~~~~~~~~~~~~~~e~~-------~~~g~~~i~i~~~~se~--~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~--- 123 (237)
T pfam00682 60 ----ALLRPVEHDIDAAVEAA-------KGAGADRVHVFIATSDL--HRKYKLNKDREEVADRAVAAVEAARSAGID--- 123 (237)
T ss_pred ----CEEECCCHHHHHHHHHH-------HHCCCCEEEEEEECCHH--HHHHHHCCCHHHHHHHHHHHHHHHHHCCCE---
T ss_conf ----10003410499999999-------96799999996105787--899885789999999999999999986990---
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH------HHHHHHHHHHHCC-CCEEEEECCHHHH
Q ss_conf 53102446777744315721147889888876640898799553114------5899999996249-9899993461899
Q gi|255764463|r 218 AISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP------YLDVCFRIKEKFG-LPTFAYQVSGEYA 290 (337)
Q Consensus 218 A~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~------yLDii~~~k~~~~-~P~~aYqVSGEYa 290 (337)
-.| +--.++..|+....+. +..=.+.|+|.+.++=-.- .-++++.++++++ .|+.. |.--
T Consensus 124 -----v~f-~~~~~~~~~~~~~~~~---~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~-H~Hn--- 190 (237)
T pfam00682 124 -----VEL-GCEDAGRTDLAFLIEV---VEVAQEAGATRINIADTVGVLTPNEAADLISALKDRVPPVIIEV-HCHN--- 190 (237)
T ss_pred -----EEE-EECCCCCCCHHHHHHH---HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEE-EECC---
T ss_conf -----588-4051232478899999---99998619857973686455798999999999997089871588-7448---
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999998889788999999999997726999982
Q gi|255764463|r 291 MIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 291 mi~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
|.--++--++.++. ||++.|=|
T Consensus 191 -----------~~Gla~aN~l~A~~-aG~~~id~ 212 (237)
T pfam00682 191 -----------DLGMAVANSLAAVE-AGADRVDG 212 (237)
T ss_pred -----------CCCHHHHHHHHHHH-HCCCEEEE
T ss_conf -----------86729999999999-68999987
No 49
>KOG0369 consensus
Probab=90.63 E-value=1.3 Score=25.38 Aligned_cols=174 Identities=22% Similarity=0.387 Sum_probs=97.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
|+--.|+++-.+..++++++.|..-. +| ||--|. ..|. -----|.+|+++||||-| --|-
T Consensus 710 p~rtKY~L~YY~nlad~lV~agtHiL----~I----KDMAG~--lKP~-aa~lLi~alRdk~PdlPi---------HvHt 769 (1176)
T KOG0369 710 PSRTKYNLDYYLNLADKLVKAGTHIL----GI----KDMAGV--LKPE-AAKLLIGALRDKFPDLPI---------HVHT 769 (1176)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEE----EE----HHHHCC--CCHH-HHHHHHHHHHHCCCCCCE---------EEEC
T ss_conf 65441147999989999986267188----65----444233--6768-889999988740899853---------7741
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCCCH-----HHHHHHHHHHCCC----CCCCEECHHHHHHH
Q ss_conf 31001365446289999999999999962897352-46676779-----9999999987788----57730033666435
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADIIA-PSEMMDGR-----VQEIRKKLDSHGH----INVGIMPYVAKFNS 209 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-PSdMMDGr-----V~aIR~~Ld~~g~----~~~~ImsYsaKfaS 209 (337)
||- .| .-+---+.-|+||||+|- .-|-|-|. .+|+-..|+.+-. .---+--||+-|++
T Consensus 770 HDt---sG---------agVAsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~ 837 (1176)
T KOG0369 770 HDT---SG---------AGVASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQ 837 (1176)
T ss_pred CCC---CC---------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 677---63---------879999999873996044330014566568851032200258756678766678888999998
Q ss_pred --HHHCCHHHHHHCCCCCCCCCCCCCCCC---------------------CHHHHHHHHHHHHHHCCCCEEEECCCHHHH
Q ss_conf --430101675310244677774431572---------------------114788988887664089879955311458
Q gi|255764463|r 210 --SFYGPYRDAISTRDLLKGDKKTYYLDP---------------------ANVQEAIREASIDIQESADMLLVKPGLPYL 266 (337)
Q Consensus 210 --~fYgPFRdA~~S~p~~~gdr~sYQmd~---------------------~n~~eA~~e~~~D~~EGAD~lMVKPa~~yL 266 (337)
-+|.||--+..-. .||-.-||... +..+.|.||+-+=. -||+-|-|. -
T Consensus 838 ~R~LYapFe~tttmk---sgn~dVY~hEIPGGQyTNL~FQA~slGLG~q~~evKkaYrEAN~lL---GDiiKVTPs---S 908 (1176)
T KOG0369 838 MRLLYAPFECTTTMK---SGNSDVYQHEIPGGQYTNLQFQAFSLGLGEQFAEVKKAYREANLLL---GDIIKVTPS---S 908 (1176)
T ss_pred HHHHCCCHHCCCCCC---CCCCCHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH---HCEEEECCC---H
T ss_conf 664303010002334---7983054243887530013333100464066899999999988775---064561553---0
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q gi|255764463|r 267 DVCFRIKE 274 (337)
Q Consensus 267 Dii~~~k~ 274 (337)
-|+.++.+
T Consensus 909 KvVGDLAQ 916 (1176)
T KOG0369 909 KVVGDLAQ 916 (1176)
T ss_pred HHHHHHHH
T ss_conf 55778999
No 50
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=90.38 E-value=1.2 Score=25.59 Aligned_cols=99 Identities=26% Similarity=0.439 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
|+++.-++-.+++++.||-+|.+ ||--|= +.|. .-..-+++||++|+++-| |=||
T Consensus 147 HTl~~yl~la~~L~~~G~DSI~I--------KDMaGl--LTP~-~AYELV~alK~~~~n~pv-----------hLH~--- 201 (616)
T TIGR01108 147 HTLEKYLELAKELLEMGVDSICI--------KDMAGL--LTPK-VAYELVSALKKEFGNLPV-----------HLHS--- 201 (616)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE--------ECCCCC--CCHH-HHHHHHHHHHHHCCCEEE-----------EEEC---
T ss_conf 67888999999999818860552--------020046--4415-899999999742397468-----------8632---
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHHCCCCEE--ECCCCCCC----HHHHHHHHHHHCCCC
Q ss_conf 36544628999999999999-996289735--24667677----999999999877885
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVI-QADAGADII--APSEMMDG----RVQEIRKKLDSHGHI 196 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~-~A~AGaDiv--APSdMMDG----rV~aIR~~Ld~~g~~ 196 (337)
.+-.=++.+|+. -.|||||+| |=|.|==| -..++=.+|...||.
T Consensus 202 --------H~TtGmA~~AllkA~EAG~d~iDTAisS~S~gtSHPptE~lv~~L~~~gyD 252 (616)
T TIGR01108 202 --------HATTGMAEMALLKAIEAGADMIDTAISSMSGGTSHPPTETLVAALRGTGYD 252 (616)
T ss_pred --------CCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf --------472337999999888707880020055234788887479999997057874
No 51
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=90.15 E-value=0.74 Score=27.00 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
Q ss_conf 32889999999999998889367633025633455445421576537999999999730144798613327100114310
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG 142 (337)
-+.+++..++.++++ .-++. ++=. ++| --|+ .|+ ++||.+|+.||+-.|.+|.=-
T Consensus 11 D~~~l~~A~~~a~~v-~~~vD-IIE~-GTp-Lik~---------~G~--~aV~~lr~~~P~~~IvAD~Kt---------- 65 (220)
T PRK13305 11 DHTSLEAAQRDVALL-QDHVD-IVEA-GTI-LCLN---------EGL--GAVKALREQCPDKIIVADWKV---------- 65 (220)
T ss_pred CCCCHHHHHHHHHHH-HCCCC-EEEE-CCH-HHHH---------HHH--HHHHHHHHHCCCCEEEEEEEE----------
T ss_conf 679999999999983-04688-9990-879-9998---------429--999999987899879987545----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHC--CHHHHHH
Q ss_conf 01365446289999999999999962897352466767799999999987788577300336664354301--0167531
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYG--PYRDAIS 220 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYg--PFRdA~~ 220 (337)
.+.| .--+-.-++||||++.=+...+ ...|+++++...-.+.-+|-= +|| ++.+|-.
T Consensus 66 -~DaG-----------~~Ea~~a~~aGAD~vTVlg~A~--~~TI~~~~~~a~~~g~~v~vD-------li~~~~~~~ak~ 124 (220)
T PRK13305 66 -ADAG-----------ETLAQQAFGAGANWMTIICAAP--LATVEKGHAVAQSCGGEIQIE-------LFGNWTLDDARD 124 (220)
T ss_pred -CCCH-----------HHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHHHCCCEEEEE-------ECCCCCHHHHHH
T ss_conf -2625-----------9999999865998899956689--799999999999809989998-------458998789999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-----------CCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 0244677774431572114788988887664089879955-----------31145899999996249989999346189
Q gi|255764463|r 221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK-----------PGLPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337)
Q Consensus 221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-----------Pa~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337)
- .+=|.|.+.+. ++-.-|+.++.+.+ .+.++++
T Consensus 125 ~----------------------------~~lgv~~v~~H~g~D~q~~g~~~~~~~l~~~k~~~~-~~~~vaV------- 168 (220)
T PRK13305 125 W----------------------------HRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSD-IGLELSI------- 168 (220)
T ss_pred H----------------------------HHCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHH-CCCEEEE-------
T ss_conf 9----------------------------986998899983336765189863101999998760-6964999-------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 999999988897889999999999977269999820
Q gi|255764463|r 290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 290 ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
+|-++. |++.-|+-.|+|++|-=
T Consensus 169 --------AGGI~~-----~~i~~~~~~~~~ivIvG 191 (220)
T PRK13305 169 --------TGGITP-----ADLPLFKDIRVKAFIAG 191 (220)
T ss_pred --------ECCCCH-----HHHHHHHCCCCCEEEEC
T ss_conf --------888788-----89999971699899989
No 52
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.01 E-value=1.9 Score=24.25 Aligned_cols=39 Identities=38% Similarity=0.423 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999999997301447986133271001143100136544628999999999999996289735
Q gi|255764463|r 110 INEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII 173 (337)
Q Consensus 110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv 173 (337)
+...++.||+.||++.||+--+-. .+++..+.++|||.|
T Consensus 122 ~~~~ik~ir~~~p~~~IiaGNV~T-------------------------~e~a~~L~~~GaD~v 160 (325)
T cd00381 122 VIEMIKFIKKKYPNVDVIAGNVVT-------------------------AEAARDLIDAGADGV 160 (325)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCC-------------------------HHHHHHHHHCCCCEE
T ss_conf 999999999768997568645668-------------------------999999986699899
No 53
>PRK07534 methionine synthase I; Validated
Probab=89.98 E-value=1.9 Score=24.23 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHCCCCEEEE--EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-CCEEEECCCCCHHHCCCCC
Q ss_conf 99999999999888936763--3025633455445421576537999999999730---1-4479861332710011431
Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAI--FPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---P-NIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 68 d~L~~eie~~~~lGI~av~L--Fp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---p-dl~vi~DVcLc~YT~hGHc 141 (337)
|.+.+.=++-++.|-.-+.- |...+..+|.....+-+ ..+..+|++.-|+.. . ++.|..++ -||-.
T Consensus 45 d~V~~iH~dyi~AGAdVI~TNTy~a~~~~L~~~~~e~~~--~eln~~Av~lAr~Aa~~~~~~v~VAGSi--gP~g~---- 116 (335)
T PRK07534 45 DKIRALYQGAVDAGSDIFLTNSFGGTAARLKLHEAQDRV--HELNRRAAEIGREVADKAGRKVIVAGSV--GPTGE---- 116 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHCCCCEEEEECC--CCCCC----
T ss_conf 999999999999659999807761469999765738999--9999999999999987329967999436--77666----
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf 0013-654462899999999999999628973524667677999999999877885773003366643543010167531
Q gi|255764463|r 142 GILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS 220 (337)
Q Consensus 142 Gi~~-~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~ 220 (337)
.+. ++....|+.++.+.+|+..+.++|+|++.---|.| +..++.+++.....+.+++.. . + |.+
T Consensus 117 -~~~p~~~~~~~e~~~~f~eq~~~L~~~gvDlil~ETm~~--i~E~~aa~~a~~~~~~P~~~~-~----s----~~~--- 181 (335)
T PRK07534 117 -IMEPMGALTHAEAVEMFHEQAEGLKAGGADVLWVETISA--PEEFRAAAEAAALAGMPWCGT-M----S----FDT--- 181 (335)
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH--HHHHHHHHHHHHHCCCCEEEE-E----E----ECC---
T ss_conf -457778999999999999999998736998995599874--999999999988559988999-9----9----828---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHH----HHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf 02446777744315721147889888876640898799553114589----99999962499899993461899999999
Q gi|255764463|r 221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLD----VCFRIKEKFGLPTFAYQVSGEYAMIKAAS 296 (337)
Q Consensus 221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLD----ii~~~k~~~~~P~~aYqVSGEYami~~a~ 296 (337)
.| + .+.-....+ +.+....+.++++.+.|.=+..-.+ ++..++..+..|+.+|-=+|.......
T Consensus 182 -----~g-~---~~~G~~~~~-~~~~~~~~~~~~~avGvNC~~~~~~~~~~~l~~~~~~~~~p~~~~pNaG~p~~~~~-- 249 (335)
T PRK07534 182 -----AG-R---TMMGLTPAD-LAGLVDKLPHPPLAFGANCGVGASDLLRTVLGFAAQGPERPIIAKGNAGIPKYVDG-- 249 (335)
T ss_pred -----CC-C---CCCCCCHHH-HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC--
T ss_conf -----99-7---489999999-99999975897300200057888999999999998489971898789999875799--
Q ss_pred HCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf 88897889999999999977269999
Q gi|255764463|r 297 LQGWINKNDAMMESLLAFKRAGCDGI 322 (337)
Q Consensus 297 ~~g~~d~~~~~~E~l~~~kRAGAd~I 322 (337)
...|-...+.+.|-..-++..||++|
T Consensus 250 ~~~~~~tpe~f~~~~~~w~~~Ga~II 275 (335)
T PRK07534 250 HIHYDGTPELMAEYAVLARDAGARII 275 (335)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 40437999999999999998798199
No 54
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=89.82 E-value=2 Score=24.14 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCCCCHHH--HHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 32889999999999998889367633025633455445-42157653799--9999999730144798613327100114
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG-SHIIDPDNLIN--EGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G-seA~n~dglv~--rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
-+.++..+=..++.+.+.||++|+=-=+=|+. +++.= ...-+|-||-| --||-||.+|+|-. +||.-.| .-|
T Consensus 75 TN~~~e~ID~AL~~~~~~G~~NiLALRGDPP~-~~~~wlds~~~EgGF~YA~DLV~yIr~~YGD~F---~IgVAGY-PEg 149 (312)
T TIGR00677 75 TNMPIEMIDDALERAKSNGIQNILALRGDPPH-GDEDWLDSTEVEGGFKYAVDLVKYIRSKYGDYF---CIGVAGY-PEG 149 (312)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---CEEECCC-CCC
T ss_conf 89757889999999986565334003761068-765533456787515766788998775238802---1120278-777
Q ss_pred CCCCCCCC-----C--C----CHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 31001365-----4--4----62899999999999999628973524
Q gi|255764463|r 140 HDGILCDG-----E--I----VNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 140 HcGi~~~g-----~--I----dND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
||-.+.+| . + |-++.|+-|.+- -+||||.|--
T Consensus 150 Hpe~i~~Gla~~~~kd~GheqdP~~DL~yLK~K----V~aGADfIiT 192 (312)
T TIGR00677 150 HPEAIEDGLASNEAKDVGHEQDPEKDLKYLKEK----VDAGADFIIT 192 (312)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH----HCCCCCEEEE
T ss_conf 834665202577532467545736789999886----3058974752
No 55
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=89.15 E-value=0.97 Score=26.22 Aligned_cols=186 Identities=21% Similarity=0.281 Sum_probs=94.0
Q ss_pred HHHHHHCCCEEEECCCCC----HHHCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 999730144798613327----1001143--1001365446289999999999999962897352466767799999999
Q gi|255764463|r 116 AIKKNIPNIGIITDVALD----PFTIHGH--DGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKK 189 (337)
Q Consensus 116 ~IK~~fpdl~vi~DVcLc----~YT~hGH--cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~ 189 (337)
.+++..++=+++.|=++- .|.-+-- -|+=.+.++.|..-=+.+.++-..|.+||||||--.-- ++-+-+
T Consensus 7 ~l~~~l~~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTF-----gat~i~ 81 (311)
T COG0646 7 QLREALKERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTF-----GATTIK 81 (311)
T ss_pred HHHHHHHCCEEEEECHHHHHHHHCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCC-----CCCHHH
T ss_conf 899998719789716024557764786676255447707875479499999999999646767873477-----865365
Q ss_pred HHHCCCCC---------CCEECHHHHHHH--------HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHH
Q ss_conf 98778857---------730033666435--------430101675310244677774431572114788988887-664
Q gi|255764463|r 190 LDSHGHIN---------VGIMPYVAKFNS--------SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI-DIQ 251 (337)
Q Consensus 190 Ld~~g~~~---------~~ImsYsaKfaS--------~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~-D~~ 251 (337)
|...+..+ +-|---+|+-++ .=-||.+..+... +| |-+.+..-.++.+|... =++
T Consensus 82 lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~----~~---~~v~fd~l~~ay~eq~~~Li~ 154 (311)
T COG0646 82 LADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSIS----PD---FAVTFDELVEAYREQVEGLID 154 (311)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC----CC---CCCCHHHHHHHHHHHHHHHHH
T ss_conf 75507388999999999999999986447887538987326867767768----76---663599999999999999983
Q ss_pred CCCCEEEECCCHHHHH---HHHHHHHHCC-----CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf 0898799553114589---9999996249-----989999346189999999988897889999999999977269999
Q gi|255764463|r 252 ESADMLLVKPGLPYLD---VCFRIKEKFG-----LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGI 322 (337)
Q Consensus 252 EGAD~lMVKPa~~yLD---ii~~~k~~~~-----~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~I 322 (337)
+|||.+++.-----|- .+.-+++.|. +|+.+=.. =+ ..|..-.-+.+-+.|.+++.+|++.+
T Consensus 155 gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~T-i~--------~sG~tl~Gq~~~a~~~~l~~~~~~~v 224 (311)
T COG0646 155 GGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGT-IT--------DSGRTLSGQTIEAFLNSLEHLGPDAV 224 (311)
T ss_pred CCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-EE--------CCCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 787589975221689899999999999873277654799999-80--------37612379868999998663597478
No 56
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.92 E-value=2.3 Score=23.71 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 11458999999962499899993461899999999888978
Q gi|255764463|r 262 GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN 302 (337)
Q Consensus 262 a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d 302 (337)
....++....+|+.+++||.+-.-=-.-.+...+.+.|+.|
T Consensus 266 ~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~a~~~l~~g~~D 306 (327)
T cd02803 266 EGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKAD 306 (327)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 52238999999997698199989989999999999889931
No 57
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=88.70 E-value=1.5 Score=25.02 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCC
Q ss_conf 86328899999999999988893676330256334554454215765379999999997301-44798613327100114
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHG 139 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hG 139 (337)
.--+...+.+.+.++.+.+.|+..+.++|.+-+-. +-...+ -.+.++...+... .+-||+-
T Consensus 15 ~dg~iD~~~l~~~v~~li~~Gv~gi~v~GstGE~~-----~Ls~eE---r~~v~~~~v~~~~grvpvi~g---------- 76 (296)
T PRK03620 15 ADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFF-----SLTPDE---YSQVVRAAVEACAGRVPVIAG---------- 76 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-----HCCHHH---HHHHHHHHHHHHCCCCEEEEC----------
T ss_conf 99595999999999999977999899684231343-----489999---999999999983897359825----------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--CCCCC----CCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf 31001365446289999999999999962897352--46676----7799999999987788577300336
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADIIA--PSEMM----DGRVQEIRKKLDSHGHINVGIMPYV 204 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA--PSdMM----DGrV~aIR~~Ld~~g~~~~~ImsYs 204 (337)
|| . ...+++ +.|....++|||.+. |.--. +|-+...|..-+. .+.+||=|-
T Consensus 77 -vg-----~-~t~~ai----~la~~A~~~Gadai~v~pPyy~~~~~~~l~~~~~~ia~a---~~lPi~lYn 133 (296)
T PRK03620 77 -AG-----G-GTAQAI----EYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKS---TDLGVIVYN 133 (296)
T ss_pred -CC-----C-CHHHHH----HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEC
T ss_conf -77-----5-379999----999999982999899669867899999999999999983---189977517
No 58
>pfam00016 RuBisCO_large Ribulose bisphosphate carboxylase large chain, catalytic domain. The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.
Probab=88.36 E-value=2.5 Score=23.47 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999999628973524667677999999999877885773003366643543010167531024467777443
Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTY 232 (337)
Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sY 232 (337)
.|-+.+++++..++..|.|+|- |.+...+-+-+.+.-.+.-. .+|++-+..-.|.|+-|
T Consensus 27 ls~~~~a~~~~e~~~gGvD~iK----------------DDE~l~~~~~~p~~eRv~~~-----~~a~~~a~~eTG~~~~y 85 (309)
T pfam00016 27 LSAKNYGRAVYECLRGGLDFTK----------------DDENINSQPFMRWRDRFLFV-----AEAINRAQAETGEVKGH 85 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE----------------CCCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCEEE
T ss_conf 9989999999999704874303----------------77767897776689999999-----99999999986982289
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCEEEECC---CHHHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 1572114--7889888876640898799553---114589999999624998999-934618999999998889788999
Q gi|255764463|r 233 YLDPANV--QEAIREASIDIQESADMLLVKP---GLPYLDVCFRIKEKFGLPTFA-YQVSGEYAMIKAASLQGWINKNDA 306 (337)
Q Consensus 233 Qmd~~n~--~eA~~e~~~D~~EGAD~lMVKP---a~~yLDii~~~k~~~~~P~~a-YqVSGEYami~~a~~~g~~d~~~~ 306 (337)
-.|.... .|-++-++.=++.|+..+||-. |+..|--+++..+...+|+-+ ...+|-|.- .-..|+ +.. +
T Consensus 86 ~~NiTa~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~al~~l~~~~r~~~~~lh~Hra~~ga~tr---~~~~Gi-~~~-v 160 (309)
T pfam00016 86 YLNVTADTMEEMYKRAEYAKELGSPIIMHDLLTGGYTANTSLATWARDNGMLLHIHRAGHAVYDR---QKNHGI-HFR-V 160 (309)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHC---CCCCCC-CHH-H
T ss_conf 97215897999999999999949971137887266288999999887629567603440034205---876765-199-9
Q ss_pred HHHHHHHHHHHCCCEEEE
Q ss_conf 999999997726999982
Q gi|255764463|r 307 MMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 307 ~~E~l~~~kRAGAd~Iit 324 (337)
+ ..-.+=||+|.|.+
T Consensus 161 -l--~Kl~RLaG~D~ih~ 175 (309)
T pfam00016 161 -L--AKWLRLSGGDHIHT 175 (309)
T ss_pred -H--HHHHHHCCCCCCCC
T ss_conf -9--99999758770215
No 59
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=87.19 E-value=2.9 Score=23.01 Aligned_cols=107 Identities=24% Similarity=0.267 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCC
Q ss_conf 86328899999999999988893676330256334554454215765379999999997301447986133271001143
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGH 140 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGH 140 (337)
|...|+-+.+-+.++++.+.||--|-+|- ++-+- .=+--+|.+++++- -++..|+| ||-+
T Consensus 623 gY~nyPDnVi~~Fvkqaa~~GIDvFRiFD----sLNwv---------~~M~vaidAV~e~g----kv~EatiC-YTGD-- 682 (1149)
T COG1038 623 GYKNYPDNVIREFVKQAAKSGIDVFRIFD----SLNWV---------EQMRVAIDAVREAG----KVAEATIC-YTGD-- 682 (1149)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEH----HHCCH---------HHCHHHHHHHHHCC----CEEEEEEE-ECCC--
T ss_conf 76779668999999998766964898410----01025---------43445899998629----84799887-3056--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC--------HHHHHHHHHH
Q ss_conf 10013654462899999999999999628973524667677--------9999999998
Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG--------RVQEIRKKLD 191 (337)
Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG--------rV~aIR~~Ld 191 (337)
|++.+.-. -||+.+.++|.-.-++||+|+|--||--- -|+++|+..|
T Consensus 683 --ildp~r~k--Y~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~d 737 (1149)
T COG1038 683 --ILDPGRKK--YTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVD 737 (1149)
T ss_pred --CCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf --67877644--44899999999999667727876333421476999999999987448
No 60
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.19 E-value=1.8 Score=24.39 Aligned_cols=156 Identities=16% Similarity=0.223 Sum_probs=80.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHC
Q ss_conf 8786328899999999999988893676330256334554454215765379999999997301-447986133271001
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTI 137 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~ 137 (337)
+-.......+.+.+.++.+.+.|+..|.+++.+-+.. +-+..+ -.+.++...+..+ .+-||+-|
T Consensus 17 F~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~-----~Ls~eE---r~~l~~~~~~~~~g~~~vi~gv------- 81 (296)
T TIGR03249 17 FDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFF-----SLTPAE---YEQVVEIAVSTAKGKVPVYTGV------- 81 (296)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH-----HCCHHH---HHHHHHHHHHHCCCCCEEECCC-------
T ss_conf 6898787999999999999977999899783051666-----589999---9999999999838984151278-------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCCC----CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH
Q ss_conf 143100136544628999999999999996289735--246676----77999999999877885773003366643543
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADII--APSEMM----DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF 211 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdMM----DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f 211 (337)
|. .-.+++ +.|-...++|+|.| .|.-.. +|-+...++..+. .+.+||-|. +
T Consensus 82 ---------g~-~t~~ai----~la~~a~~~Gad~v~v~pPyy~~~~~~~l~~~f~~ia~a---~~~pi~lYn--~---- 138 (296)
T TIGR03249 82 ---------GG-NTSDAI----EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCES---TDLGVIVYQ--R---- 138 (296)
T ss_pred ---------CH-HHHHHH----HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEC--C----
T ss_conf ---------61-299999----999999875999789779988999999999999999971---599778730--7----
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 010167531024467777443157211478898888766408987995531145899999996249
Q gi|255764463|r 212 YGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG 277 (337)
Q Consensus 212 YgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~ 277 (337)
|.+ -+++ +-+.+... +--.++-||=+-.-++-+.++.+...
T Consensus 139 -----------~~~-------~~~~----~~l~~L~~---~~p~i~giK~s~~d~~~~~~~~~~~~ 179 (296)
T TIGR03249 139 -----------DNA-------VLNA----DTLERLAD---RCPNLVGFKDGIGDMEQMIEITQRLG 179 (296)
T ss_pred -----------CCC-------CCCH----HHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHCC
T ss_conf -----------787-------8799----99999981---57987999977668999999999739
No 61
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=85.87 E-value=2.8 Score=23.06 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337)
.....+.+.+.++.+.+.|+..|.+.+..-+-. +-+..+ -.+.++...+..+ .+-|++-|.-
T Consensus 17 g~iD~~~l~~~v~~l~~~Gv~Gi~~~GstGE~~-----~Ls~~E---r~~v~~~~~~~~~~~~pvi~gv~~--------- 79 (292)
T PRK03170 17 GSVDFAALRKLVDYQIANGTDGLVVVGTTGESP-----TLTHEE---HEELIRAVVEAVNGRVPVIAGTGS--------- 79 (292)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCCC-----CCCHHH---HHHHHHHHHHHCCCCCEEEECCCC---------
T ss_conf 695999999999999977999999683241411-----289999---999999999873897128843787---------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECC---CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf 00136544628999999999999996289735---246---676779999999998778857730033666435430101
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII---APS---EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY 215 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APS---dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF 215 (337)
.+...-.+.|...+++|||.| .|. --.||-+..-+...+. .+.+|+=|-.
T Consensus 80 -----------~~t~~~i~~a~~A~~~Gadav~v~~P~y~~~s~~~l~~~f~~ia~~---~~~Pi~lYn~---------- 135 (292)
T PRK03170 80 -----------NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEA---TDLPIILYNV---------- 135 (292)
T ss_pred -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC----------
T ss_conf -----------6799999999989875999899617768899999999999999863---5997698737----------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6753102446777744315721147889888876640898799553114589999999624998999934
Q gi|255764463|r 216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQV 285 (337)
Q Consensus 216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqV 285 (337)
|.. ..+.+++ +-+++. .|=-.++-+|=+-+-++-+.++.+..+-.+..|.-
T Consensus 136 -------P~~----tg~~l~~----~~l~~L----~~~~nv~giKdss~d~~~~~~~~~~~~~~~~v~~G 186 (292)
T PRK03170 136 -------PGR----TGVDILP----ETVARL----AEHPNIVGIKEATGDLERVSELRELCPDDFAVYSG 186 (292)
T ss_pred -------CCC----CCCCCCH----HHHHHH----HCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEECC
T ss_conf -------863----2767699----999998----17899899996999999999999866987367458
No 62
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=85.73 E-value=0.87 Score=26.54 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
+.+++..++-+++..+. +.- +=. ++| --|+ .| .++||.+|+.||+-.|++|.=.+-
T Consensus 12 ~~~l~~Al~ia~~~~~~-vdi-iEv-Gtp-Li~~---------~G--~~~V~~lr~~~p~k~I~aDlK~~D--------- 67 (216)
T PRK13306 12 NQDLDSALEDAKKVAEE-VDI-IEV-GTI-LCLA---------EG--MKAVRVLRALYPDKIIVADTKIAD--------- 67 (216)
T ss_pred CCCHHHHHHHHHHHHCC-CCE-EEE-CCH-HHHH---------HC--HHHHHHHHHHCCCCEEEEEEEECC---------
T ss_conf 89999999999972322-899-996-859-9998---------58--999999998789997999753236---------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 136544628999999999999996289735246676
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMM 179 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM 179 (337)
-| .|. ++++ ++||||++.=+...
T Consensus 68 --~g-----~~e---a~~a---~~aGAd~vtV~g~a 90 (216)
T PRK13306 68 --AG-----KIL---AKMA---FEAGADWVTVICAA 90 (216)
T ss_pred --CC-----HHH---HHHH---HHCCCCEEEEECCC
T ss_conf --53-----899---9999---97289889995668
No 63
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=85.16 E-value=3.6 Score=22.33 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEE-------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH
Q ss_conf 999999999988893676330-------------256334554454215765379999999997301-447986133271
Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFP-------------NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP 134 (337)
Q Consensus 69 ~L~~eie~~~~lGI~av~LFp-------------~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~ 134 (337)
.-.+.++.+.+.|.-.|-|-+ .. +.-.|+.|-.--|.--|+...|++||+.++ |..|..=+..++
T Consensus 151 ~f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~-N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~ 229 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCC-CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 999999999984999899624530358998548735-8988645898788561899999999997098873899965633
Q ss_pred HHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 001143100136-5446289999999999999962897352466
Q gi|255764463|r 135 FTIHGHDGILCD-GEIVNDETIELISHAAVIQADAGADIIAPSE 177 (337)
Q Consensus 135 YT~hGHcGi~~~-g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd 177 (337)
|-....+|.+.. .....-.|++-..+.+-.+.++|.|++--|.
T Consensus 230 ~~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~ 273 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 45665457885777888763599999999999983988896477
No 64
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.99 E-value=1.7 Score=24.53 Aligned_cols=87 Identities=26% Similarity=0.408 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
..+++..++-++++.+ ++. .| .+ |.+-+...| .+.|+.||+.||+..|++|.=++-
T Consensus 8 ~~~~~~A~~i~~~~~~-~v~---~i-kv--------G~~L~~~~G--~~~v~~lk~~~p~~~I~~DlK~~D--------- 63 (206)
T TIGR03128 8 LLDIEEALELAEKVAD-YVD---II-EI--------GTPLIKNEG--IEAVKEMKEAFPDRKVLADLKTMD--------- 63 (206)
T ss_pred CCCHHHHHHHHHHHCC-CCC---EE-EE--------CCHHHHHHC--HHHHHHHHHHCCCCEEEEEEEECC---------
T ss_conf 9999999999997035-562---99-98--------969999768--999999998789997999950447---------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-----CCCCCCCHHHHHH
Q ss_conf 1365446289999999999999962897352-----4667677999999
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIA-----PSEMMDGRVQEIR 187 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-----PSdMMDGrV~aIR 187 (337)
|-.. .+-..+++|||++- +.+||..-+.+.+
T Consensus 64 ----------~g~~---~~~~~~~~Gad~itVh~~~~~~ti~~a~~~a~ 99 (206)
T TIGR03128 64 ----------AGEY---EAEQAFAAGADIVTVLGVADDATIKGAVKAAK 99 (206)
T ss_pred ----------CHHH---HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf ----------4389---99999972898999943489799999999999
No 65
>PRK01362 putative translaldolase; Provisional
Probab=84.93 E-value=3.7 Score=22.26 Aligned_cols=94 Identities=22% Similarity=0.427 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
.+.+.++++.+++.++|=+- .+ +||-. .+|+ +|++.+++.- +-+-+-.|
T Consensus 61 ~~~~~m~~qA~~l~~~~~nv--~V-KIP~t-----------~~Gl--~ai~~L~~~G--i~vn~Tai------------- 109 (214)
T PRK01362 61 LDAEGMIKEGRELAKIAPNV--VV-KIPMT-----------TEGL--KAVKALSKEG--IKTNVTLC------------- 109 (214)
T ss_pred CHHHHHHHHHHHHHHHCCCE--EE-ECCCC-----------HHHH--HHHHHHHHCC--CCEEEEEC-------------
T ss_conf 41999999999999848776--99-81896-----------6699--9999999849--97576645-------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-CCC-----CC--HHHHHHHHHHHCCCCCCCEEC
Q ss_conf 36544628999999999999996289735246-676-----77--999999999877885773003
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPS-EMM-----DG--RVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-dMM-----DG--rV~aIR~~Ld~~g~~~~~Ims 202 (337)
.-..||+.-|+||||+|||= +.| || .|..|++.++.+|+ ++-||.
T Consensus 110 ------------~s~~Qa~~Aa~aga~yispy~gR~~d~G~Dg~~~i~~i~~~~~~~~~-~tkIL~ 162 (214)
T PRK01362 110 ------------FSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF-ETEIIA 162 (214)
T ss_pred ------------CCHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf ------------88999999987599689863121865589828999999999996399-813752
No 66
>PRK09275 aspartate aminotransferase; Provisional
Probab=84.91 E-value=1.7 Score=24.51 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC-------------CCCHHHC
Q ss_conf 999999998889367633025633455445421576537999999999730144798613-------------3271001
Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDV-------------ALDPFTI 137 (337)
Q Consensus 71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DV-------------cLc~YT~ 137 (337)
-+|++++.+-.|+ +|| .|.+ ++-.|-+++++ -+.+-...+|+.-|||.||||= +.|||++
T Consensus 235 d~EleKL~DP~IK--Alf-~VNP---sNP~S~~ls~e-~l~~i~~IV~~~nPdLmIiTDDVYgTF~~~F~Sl~a~~P~NT 307 (531)
T PRK09275 235 DKELEKLRDPSIK--ALF-VVNP---SNPPSVAMSDE-SLEKIADIVKEDRPDLMIITDDVYGTFVDDFRSLFAELPYNT 307 (531)
T ss_pred HHHHHHHCCCCCE--EEE-EECC---CCCCCCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHCCCCE
T ss_conf 8999874497711--899-9899---99866656999-999999999742998799954653226456463656488754
Q ss_pred CC
Q ss_conf 14
Q gi|255764463|r 138 HG 139 (337)
Q Consensus 138 hG 139 (337)
-+
T Consensus 308 i~ 309 (531)
T PRK09275 308 LL 309 (531)
T ss_pred EE
T ss_conf 78
No 67
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=84.31 E-value=1.6 Score=24.80 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEECC-CCC-----CC--HHHHHHHHHHHCCCCCCCEECH
Q ss_conf 99999999999996289735246-676-----77--9999999998778857730033
Q gi|255764463|r 154 TIELISHAAVIQADAGADIIAPS-EMM-----DG--RVQEIRKKLDSHGHINVGIMPY 203 (337)
Q Consensus 154 Tl~~L~k~Al~~A~AGaDivAPS-dMM-----DG--rV~aIR~~Ld~~g~~~~~ImsY 203 (337)
|+---..||+.-|+||||+|||= +=| || .|..|++.++.+|+. +-||.=
T Consensus 109 Tavys~~Qa~~Aa~aGA~YvsPyvGR~~d~G~Dg~~~i~~i~~~~~~~~~~-tkILaA 165 (220)
T PRK12655 109 TAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPE-SMVLAA 165 (220)
T ss_pred EECCCHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CEEEEE
T ss_conf 851789999999985997896321057555898489999999999975999-689998
No 68
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=84.02 E-value=1.9 Score=24.28 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCEEECC-----CC-CCC--HHHHHHHHHHHCCCCCCCEECH
Q ss_conf 9999999996289735246-----67-677--9999999998778857730033
Q gi|255764463|r 158 ISHAAVIQADAGADIIAPS-----EM-MDG--RVQEIRKKLDSHGHINVGIMPY 203 (337)
Q Consensus 158 L~k~Al~~A~AGaDivAPS-----dM-MDG--rV~aIR~~Ld~~g~~~~~ImsY 203 (337)
-..||+.-|+||||+|||= |. .|| .|..|++.++.+|+ ++-||.=
T Consensus 115 s~~Qa~~Aa~aGA~yvsPf~GRi~d~G~Dg~~~i~~i~~~~~~~~~-~tkIL~A 167 (222)
T PRK12656 115 TTFQGLLAIEAGADYLAPYYNRMENLNIDSEAVIGQLAEAINRENS-NSKILAA 167 (222)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHCCC-CCEEEEE
T ss_conf 9999999998699899971464875499928999999999985599-9619865
No 69
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=83.99 E-value=3.4 Score=22.54 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCC
Q ss_conf 32889999999999998-8893676330256334554454215765379999999997301-447986133271001143
Q gi|255764463|r 63 MRMSIDVAVEKIKQVAD-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGH 140 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGH 140 (337)
.+...+.+.+.++.+++ .|+.+|.+++...+-. +-+.. =-.+.++...+..+ .+-||+-|. +
T Consensus 19 g~iD~~~l~~~v~~~i~~~Gv~Gi~~~GstGE~~-----~Ls~~---Er~~l~~~~~~~~~~r~pvi~gv~--------~ 82 (294)
T PRK04147 19 GQIDEQGLRQLVRFNIEKQGIDGLYVGGSTGEAF-----LLSTE---ERKQVLEIVAEEAKGKIKLIAQVG--------S 82 (294)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHH-----HCCHH---HHHHHHHHHHHHCCCCCEEEECCC--------C
T ss_conf 5969999999999999877998999795131643-----48999---999999999998189732763478--------8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCC---CCCCHHHHHHHHHHHCCCCCCCEECHHHHH
Q ss_conf 1001365446289999999999999962897352---466---767799999999987788577300336664
Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADIIA---PSE---MMDGRVQEIRKKLDSHGHINVGIMPYVAKF 207 (337)
Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKf 207 (337)
.+.+...+++-...++|+|.|. |.= ..++-+...+...++ .+.+||-|-.-.
T Consensus 83 ------------~st~~ai~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~va~a---~~~pi~iYn~P~ 140 (294)
T PRK04147 83 ------------VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDS---ADNPMIVYNIPA 140 (294)
T ss_pred ------------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECCC
T ss_conf ------------8889999999999975998899727867789989999999999850---499778875675
No 70
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.90 E-value=4.1 Score=21.97 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCEEEEEE------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHC
Q ss_conf 9999999988893676330------------256334554454215765379999999997301-447986133271001
Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFP------------NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTI 137 (337)
Q Consensus 71 ~~eie~~~~lGI~av~LFp------------~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~ 137 (337)
.+.++.+.+.|.-.|-|-. .. ++-.|+.|-.--|.--|+...|++|++.++ |..|..=+..+++-.
T Consensus 140 ~~AA~rA~~AGfDgVEIH~ahGyLl~qFLSp~~-N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~ 218 (353)
T cd02930 140 ARCAALAREAGYDGVEIMGSEGYLINQFLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 999999998299989962567614877338754-7885745798788879999999999997099874999736012689
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 143100136544628999999999999996289735246
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPS 176 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS 176 (337)
. -++.|+++ +.+..+.++|.|+|--|
T Consensus 219 ~---------G~~~~e~~----~~~~~l~~~GvD~i~vs 244 (353)
T cd02930 219 G---------GSTWEEVV----ALAKALEAAGADILNTG 244 (353)
T ss_pred C---------CCCHHHHH----HHHHHHHHCCCCEEEEC
T ss_conf 9---------98999999----99999998199999963
No 71
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.64 E-value=4.6 Score=21.64 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCH
Q ss_conf 4589999999624998999934618999999998889788
Q gi|255764463|r 264 PYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINK 303 (337)
Q Consensus 264 ~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~ 303 (337)
+.++..+.+|+.+.+||.+-.-=..-.+...+-+.|..|.
T Consensus 277 ~~~~~a~~ik~~~~ipvi~~G~i~~p~~ae~~l~~G~~Dl 316 (336)
T cd02932 277 YQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADL 316 (336)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 2679999999878983999799899999999998799400
No 72
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.40 E-value=4.7 Score=21.58 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 8988887664089879955311458999999962499899
Q gi|255764463|r 242 AIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTF 281 (337)
Q Consensus 242 A~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~ 281 (337)
-+.++..-++-||+.+.+.=- -.++-+.+.+...+|+.
T Consensus 158 l~~dA~ale~AGa~~ivlE~v--p~~la~~It~~~~IPtI 195 (240)
T cd06556 158 LIADALAYAPAGADLIVMECV--PVELAKQITEALAIPLA 195 (240)
T ss_pred HHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHCCCCCEE
T ss_conf 999999998479849987458--49999999956999899
No 73
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=81.88 E-value=4.4 Score=21.77 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337)
.+...+.+.+.++.+.+.|+..+.+++.+-+-.. -...+ -.+.++...+..+ .+-|++-|.-
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~-----Ls~~E---r~~v~~~~~~~~~~~~pvi~gv~~--------- 79 (289)
T pfam00701 17 GRLDEEALRKLIEFLINKGADGLFVGGTTGESFT-----LSTEE---HEQLIEITVDEAKGRIPVIAGTGS--------- 79 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCCCC-----CCHHH---HHHHHHHHHHHCCCCCEEEECCCC---------
T ss_conf 5969999999999999779999997836403113-----88999---999999999981998628637888---------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHH
Q ss_conf 001365446289999999999999962897352---4667---677999999999877885773003366
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVA 205 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsa 205 (337)
.+.....+++....++|||.|. |.-- -++-+..-+...+. .+.+||=|-.
T Consensus 80 -----------~st~~~i~~a~~A~~~Gad~i~v~pP~y~~~~~~~i~~~~~~va~a---~~lPi~iYn~ 135 (289)
T pfam00701 80 -----------NSTREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHFKAIAAA---TDLPVILYNV 135 (289)
T ss_pred -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC
T ss_conf -----------7899999999999974999788779988899999999999999831---5997799715
No 74
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.64 E-value=5 Score=21.40 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCHHHCCCCCCC
Q ss_conf 8999999999999888936763302563345544542157653799999999973014--47986133271001143100
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi 143 (337)
+.+.+.+.++++.+.|+.+|.++| ..++..++..++ +.+.+=|. .| +|.
T Consensus 11 t~~~i~~~~~~a~~~~~~av~v~p----------------------~~v~~~~~~l~~~~~~v~~vv~-fp---~g~--- 61 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----------------------GYVRLAADALAGSDVPVIVVVG-FP---TGL--- 61 (201)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECH----------------------HHHHHHHHHCCCCCCCEEEEEC-CC---CCC---
T ss_conf 999999999999862982999889----------------------9999999980899983899958-89---999---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCE---EEC-CCCC----CCHHHHHHHHHHHC--CCCCCCEECHHHHHHHHHHC
Q ss_conf 13654462899999999999999628973---524-6676----77999999999877--88577300336664354301
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADI---IAP-SEMM----DGRVQEIRKKLDSH--GHINVGIMPYVAKFNSSFYG 213 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDi---vAP-SdMM----DGrV~aIR~~Ld~~--g~~~~~ImsYsaKfaS~fYg 213 (337)
...++.-..++.|+. .|||- |.+ +-.. +.....|++..+.. |.. +.+.-+..
T Consensus 62 ------~~~~~k~~e~~~ai~---~GAdeid~v~~~~~~~~~~~~~~~~ei~~v~~~~~~g~~-~kvi~e~~-------- 123 (201)
T cd00945 62 ------TTTEVKVAEVEEAID---LGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLP-LKVILETR-------- 123 (201)
T ss_pred ------CCHHHHHHHHHHHHH---HCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCCC-EEEEECCC--------
T ss_conf ------977799999999999---099989974056777566889999999999997357983-79996167--------
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 0167531024467777443157211478898888766408987995531----145899999996249989999346189
Q gi|255764463|r 214 PYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337)
Q Consensus 214 PFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337)
|. .+.++-......-.+-|||++=...| ..-++-++.+++...-++... +||
T Consensus 124 ------------------~l---~~~~~i~~a~~~~~~~GadfvKtstG~~~~~at~~~v~~m~~~~~~~~~vk-~sG-- 179 (201)
T cd00945 124 ------------------GL---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVK-AAG-- 179 (201)
T ss_pred ------------------CC---CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE-CCC--
T ss_conf ------------------78---999999999999998099879855887889899999999999828786386-358--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 99999998889788999999999997726999982
Q gi|255764463|r 290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 290 ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
-+. .+|....+..|||+.|.|
T Consensus 180 ----------Gi~----~~~~a~~~l~aGa~~igt 200 (201)
T cd00945 180 ----------GIK----TLEDALAAIEAGADGIGT 200 (201)
T ss_pred ----------CCC----CHHHHHHHHHHCCCEEEC
T ss_conf ----------979----999999999828653537
No 75
>PRK01060 endonuclease IV; Provisional
Probab=81.58 E-value=5 Score=21.39 Aligned_cols=209 Identities=17% Similarity=0.194 Sum_probs=109.1
Q ss_pred HHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89998634778887733116667589881104888786328899999999999988893676330256334554454215
Q gi|255764463|r 25 WIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHII 104 (337)
Q Consensus 25 ~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~ 104 (337)
..|+..+++.+.+. ++++|..= .-..=..-|.++..|++.+.++++.+..+|++.+.+-|+ ...+...=.+++
T Consensus 51 ~f~~~~~~~~~~~~----~iv~Ha~Y-lINLasp~~~~~~kS~~~l~~el~r~~~lG~~~vV~HpG--s~~g~~~~~~gi 123 (281)
T PRK01060 51 AFKAACEKYGISPE----DILVHAPY-LINLGNPNPEKLEKSRDALIDEIERCEALGAKLLNFHPG--SHLGAIDEADCL 123 (281)
T ss_pred HHHHHHHHCCCCCC----CEEEECCC-EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCHHHHH
T ss_conf 99999998199975----45752453-232689987899999999999999999809985984576--336888799999
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH----------H----HH-HHCC
Q ss_conf 7653799999999973014479861332710011431001365446289999999999----------9----99-9628
Q gi|255764463|r 105 DPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAA----------V----IQ-ADAG 169 (337)
Q Consensus 105 n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~A----------l----~~-A~AG 169 (337)
+ -+.++|..+-+.-++ |-++-=|+-|.-.-+. .|++-|+.+- + +| -.||
T Consensus 124 ~---~i~~~l~~~l~~~~~------~~ilLEn~AGqG~~lG-------~~~eeL~~ii~~v~~~~rvGvClDTcH~faAG 187 (281)
T PRK01060 124 D---RIAESLNEALDKTQG------VTIVLENTAGQGSELG-------RRFEELARIIDGVEDKSRVGVCLDTCHAFAAG 187 (281)
T ss_pred H---HHHHHHHHHHHCCCC------CEEEEEECCCCCCCCC-------CCHHHHHHHHHHCCCCCCEEEEEECHHHHHCC
T ss_conf 9---999999999815898------6799972489998268-------78999999999626846448874114344334
Q ss_pred CCEEECCCCCCCHHHHHHHHHHH-CCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC---HHHHHHHH
Q ss_conf 97352466767799999999987-788577300336664354301016753102446777744315721---14788988
Q gi|255764463|r 170 ADIIAPSEMMDGRVQEIRKKLDS-HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPA---NVQEAIRE 245 (337)
Q Consensus 170 aDivAPSdMMDGrV~aIR~~Ld~-~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~---n~~eA~~e 245 (337)
-|+. +| +...-+.+|+ -|+..+..+- .=+|...+ |.|+--.-+.. -..++++.
T Consensus 188 ydi~------~~-~~~~~~~fd~~iGl~~l~~iH---------------lNDSk~~~-GS~kDRHe~IG~G~IG~~~f~~ 244 (281)
T PRK01060 188 YDLR------ED-FEGVLNEFDKIVGLDYLKVMH---------------LNDSKNPL-GSRKDRHANLGEGTIGFDALRY 244 (281)
T ss_pred CCHH------HH-HHHHHHHHHHHCCHHHEEEEE---------------ECCCCCCC-CCCCCCCCCCCCCCCCHHHHHH
T ss_conf 5378------89-999999999850765555888---------------45887755-6776645567998649899999
Q ss_pred HHHHHH-CCCCEEEECC-CHHHHHHHHHHHHHCCCC
Q ss_conf 887664-0898799553-114589999999624998
Q gi|255764463|r 246 ASIDIQ-ESADMLLVKP-GLPYLDVCFRIKEKFGLP 279 (337)
Q Consensus 246 ~~~D~~-EGAD~lMVKP-a~~yLDii~~~k~~~~~P 279 (337)
+..|.. .+..+++=-| .-+|-.=|..+|++...|
T Consensus 245 ~~~~~~~~~iP~ILETP~~~~y~~EI~~Lr~~~~~~ 280 (281)
T PRK01060 245 IVHDPRFDGIPKILETPYVGIWKEEIAMLREQQFDP 280 (281)
T ss_pred HHCCHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 980952549988996899841199999999556899
No 76
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=81.35 E-value=4.4 Score=21.75 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-ECCCCCHH---HC
Q ss_conf 3288999999999999888-9367633025633455445421576537999999999730144798-61332710---01
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLG-IPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGII-TDVALDPF---TI 137 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lG-I~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi-~DVcLc~Y---T~ 137 (337)
.++.-+++.+|++.+.+.| +++|+|--| ++.+ .-+=.-+.++++.+|+.|+.|.|= ==+--++| +.
T Consensus 103 ~~Ln~~Ei~~E~~aI~k~gPf~~iLlvtG--E~e~-------~~g~~Yi~~~~~l~k~~F~~l~iEv~Pl~~eeYk~L~~ 173 (378)
T TIGR02351 103 KKLNEEEIEREIEAIKKSGPFKEILLVTG--ESEK-------AAGVEYIEEAIKLAKEYFSSLAIEVQPLTEEEYKKLKE 173 (378)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHEEEECC--CCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 04888899999999862077013001115--7775-------58837899999998752785448873077045688977
Q ss_pred CCCCCCCC
Q ss_conf 14310013
Q gi|255764463|r 138 HGHDGILC 145 (337)
Q Consensus 138 hGHcGi~~ 145 (337)
+|-|||+.
T Consensus 174 ~Gld~V~V 181 (378)
T TIGR02351 174 AGLDGVTV 181 (378)
T ss_pred CCCCEEEE
T ss_conf 08881588
No 77
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=79.70 E-value=2.6 Score=23.33 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-CCC----
Q ss_conf 5379999999997301447986133271001143100--136544628999999999999996289735246-676----
Q gi|255764463|r 107 DNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIAPS-EMM---- 179 (337)
Q Consensus 107 dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-dMM---- 179 (337)
++.+-+|-+ |.+..|+++|=. |-|..|-.-+ +....|.--.|+-.-..||+.-|+||||+|||= .=|
T Consensus 66 e~M~~~a~~-l~~~~~nvvVKI-----P~t~~Gl~ai~~L~~~Gi~vn~Tavys~~Qa~~Aa~aGA~yvsPyvgR~~d~g 139 (220)
T PRK12653 66 EGMVNDARK-LRSIIADIVVKV-----PVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQG 139 (220)
T ss_pred HHHHHHHHH-HHHHCCCEEEEE-----CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEHHHCC
T ss_conf 999999999-987357808994-----88578999999998829877852106799999999859988844425064338
Q ss_pred -CC--HHHHHHHHHHHCCCCCCCEECH
Q ss_conf -77--9999999998778857730033
Q gi|255764463|r 180 -DG--RVQEIRKKLDSHGHINVGIMPY 203 (337)
Q Consensus 180 -DG--rV~aIR~~Ld~~g~~~~~ImsY 203 (337)
|| .|..|++.++.+|+. +-||.=
T Consensus 140 ~Dg~~~i~~i~~~~~~~~~~-tkILaA 165 (220)
T PRK12653 140 GSGIQTVTDLHQLLKMHAPQ-AKVLAA 165 (220)
T ss_pred CCHHHHHHHHHHHHHHCCCC-CEEEEE
T ss_conf 98266899999999976999-889998
No 78
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=79.04 E-value=0.27 Score=30.00 Aligned_cols=139 Identities=21% Similarity=0.272 Sum_probs=61.6
Q ss_pred CCCCCCHHHH----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CH---HHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 8632889999----9999999988893676330256334554454215765-37---99999999973014479861332
Q gi|255764463|r 61 DVMRMSIDVA----VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NL---INEGICAIKKNIPNIGIITDVAL 132 (337)
Q Consensus 61 Gv~R~Sid~L----~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-gl---v~rAIr~IK~~fpdl~vi~DVcL 132 (337)
|+.|-..|.. -+...++++.|.-.=-++|+.-+.+| |....+.| ++ -...+..+|-.|.+-+.+|--.
T Consensus 175 gisRe~qD~~A~~Sh~rA~~A~~~g~f~~EI~Pv~v~~~~---~~~~~~~De~~r~~t~e~l~~L~p~f~~~GtvTagn- 250 (397)
T PRK06954 175 AFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKK---GDTVIDRDEQPFKANPEKIPTLKPAFSKTGTVTAAN- 250 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC---CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-
T ss_conf 9998786999999999999998759962006889843677---885666776655689989833687524567503557-
Q ss_pred CHHHCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHH
Q ss_conf 71001143100136544628999999999----9999962897352466767799999999987788--57730033666
Q gi|255764463|r 133 DPFTIHGHDGILCDGEIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAK 206 (337)
Q Consensus 133 c~YT~hGHcGi~~~g~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaK 206 (337)
|+-.++|=+.++ +-..+..+.|.-. -+.++.+|+| |+.|.-|-|.++|++|+.+|. .|+-+.-.-==
T Consensus 251 ss~~~DGAAavl----l~s~~~a~~~gl~p~a~i~~~~~~~~~---p~~~~~~pv~A~~k~l~~agl~~~Did~~EinEA 323 (397)
T PRK06954 251 SSSISDGAAALV----MMRASTAKRLGLAPLARVVGHSTFAQA---PSKFTTAPVGAIRKLFEKNGWRAAEVDLYEINEA 323 (397)
T ss_pred CCCCCCHHHHHH----HCCHHHHHHCCCCEEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEHHH
T ss_conf 886655667556----418999997799836999877899618---5763236899999999984999665652354057
Q ss_pred HHHH
Q ss_conf 4354
Q gi|255764463|r 207 FNSS 210 (337)
Q Consensus 207 faS~ 210 (337)
||+.
T Consensus 324 FA~~ 327 (397)
T PRK06954 324 FAVV 327 (397)
T ss_pred HHHH
T ss_conf 7888
No 79
>pfam02574 S-methyl_trans Homocysteine S-methyltransferase. This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.
Probab=78.61 E-value=6.2 Score=20.75 Aligned_cols=229 Identities=16% Similarity=0.094 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------CCCEEEECCCCCHHHC
Q ss_conf 9999999999998889367633--025633455445421576537999999999730-------1447986133271001
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIF--PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-------PNIGIITDVALDPFTI 137 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LF--p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-------pdl~vi~DVcLc~YT~ 137 (337)
.|.+.+.=++-++.|-.-+.-. ...+..++...-++. .-..+..++++.-|+.. ++..|... +-||-.
T Consensus 37 Pe~V~~iH~~yi~AGAdvI~TnTy~a~~~~l~~~g~~~~-~~~~~~~~av~lA~~A~~~~~~~~~~~~VaGs--igp~~~ 113 (303)
T pfam02574 37 PELIREIHKAYLEAGADIIETNTYQATPIGFADYGLEHL-ELRELNRRAAEIARAAADEYGNTGDKRLVAGS--IGPYGA 113 (303)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCCC
T ss_conf 699999999999807989984666163041545484167-89999999999999999984045886279863--377656
Q ss_pred CCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf 1431001--36544628999999999999996289735246676779-99999999877885773003366643543010
Q gi|255764463|r 138 HGHDGIL--CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337)
Q Consensus 138 hGHcGi~--~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337)
. ++|-- .+..+.-++-.+...+|+..+.++|+|++.-=-|-+-. +.++.+++... +..-.+.|.+.+-. |-
T Consensus 114 ~-~~~~ey~~~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~~~~~E~~~al~~~~~~-~~~p~~is~~~~~~----~~ 187 (303)
T pfam02574 114 T-ADGSEYPGYYGVSFEELKKAHRPQLEGLLDGGVDLLLLETIPDFLEAKAAVRAVEEV-FEAPGWISFPVFDS----GT 187 (303)
T ss_pred C-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH-CCCCEEEEEEEECC----CE
T ss_conf 6-777667776799999999999999999985799899985028999999999999975-49978987655128----76
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 1675310244677774431572114788988887664089879955---3114589999999624998999934618999
Q gi|255764463|r 215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK---PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAM 291 (337)
Q Consensus 215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK---Pa~~yLDii~~~k~~~~~P~~aYqVSGEYam 291 (337)
+ .|..+ .....+.+.+...-...|+|.++|- |.-.-.-+....+.....|+.+|--+|+.
T Consensus 188 ----------l-~~g~~----~~~~~~~~~~~~~~~~~~~~~iGiNC~~~~~~~~~~~~~~~~~~~~pl~~yPN~g~~-- 250 (303)
T pfam02574 188 ----------L-VDGTG----LTLSGATIEAALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSVYPNSGEP-- 250 (303)
T ss_pred ----------E-CCCCC----HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC--
T ss_conf ----------2-79984----778899999999745778708985167848788999999984599858998379898--
Q ss_pred HHHHHHCCCCCHHHHHH---HHHHHHHHHCCCEE
Q ss_conf 99999888978899999---99999977269999
Q gi|255764463|r 292 IKAASLQGWINKNDAMM---ESLLAFKRAGCDGI 322 (337)
Q Consensus 292 i~~a~~~g~~d~~~~~~---E~l~~~kRAGAd~I 322 (337)
.......|...+.... +.+.-+.++||.+|
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~w~~~Ga~ii 283 (303)
T pfam02574 251 -YDAGKKEYDGTPDELAPSYWSLKEFVASGARII 283 (303)
T ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf -779874257997998899999999998399199
No 80
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=78.33 E-value=6.4 Score=20.70 Aligned_cols=44 Identities=27% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHH
Q ss_conf 31145899999996249989999346189999999988897889
Q gi|255764463|r 261 PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKN 304 (337)
Q Consensus 261 Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~ 304 (337)
|..++++..+.+|+.+.+||.+--==..-.....+.+.|+.|.-
T Consensus 269 ~~g~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V 312 (343)
T cd04734 269 PPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 76434889999999729859997998999999999987996216
No 81
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=78.26 E-value=6.4 Score=20.69 Aligned_cols=128 Identities=24% Similarity=0.254 Sum_probs=79.7
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 81104888786328899999999999988893676330256334554454215765379999999997301447986133
Q gi|255764463|r 52 TVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 52 ~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc 131 (337)
..++|+-++.+.+ +...+...++.+.++||+.|++--+=|+ .-+..+.. +.--...|+.||....++ .-.-++
T Consensus 77 ~~~~i~Hltc~d~-n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~----~~~s~dLv~lik~~~~~~-f~i~~A 149 (291)
T COG0685 77 GIEPIPHLTCRDR-NRIEIISILKGAAALGIRNILALRGDPP-AGDKPGGK----DLYSVDLVELIKKMRGGI-FDIGVA 149 (291)
T ss_pred CCCEEEEEECCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCC----CCCHHHHHHHHHHHCCCC-EEEEEE
T ss_conf 9831347514688-9899999999999818855999458987-77887865----468999999999856897-358998
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCC
Q ss_conf 27100114310013654462899999999999999628973524667677-999999999877885773
Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVG 199 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~ 199 (337)
+.|+ ||.- -.+. +.-+..|. --.+||||.+=--=.-|. ++..+.+.+...|- +++
T Consensus 150 ~~Pe---~h~~-s~~~----~~d~~~lk----rKv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~-~~p 205 (291)
T COG0685 150 AYPE---GHPE-SKDV----KEDIKRLK----RKVDAGADFFITQFFFDVEAFERFAERVRAAGI-DIP 205 (291)
T ss_pred ECCC---CCCC-CHHH----HHHHHHHH----HHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCC-CCC
T ss_conf 6788---7844-1005----78999999----998658865764201689999999999986389-985
No 82
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=77.96 E-value=6.5 Score=20.63 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHCCCCEEEECCCH----HHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 64089879955311----4589999999624-998999934
Q gi|255764463|r 250 IQESADMLLVKPGL----PYLDVCFRIKEKF-GLPTFAYQV 285 (337)
Q Consensus 250 ~~EGAD~lMVKPa~----~yLDii~~~k~~~-~~P~~aYqV 285 (337)
++.|+|+|-|--|- .-+|.|+.+|..+ ++++.|=+|
T Consensus 236 v~AGvDvlvIDtAHGhS~~vi~~vk~iK~~~p~~~viaGNv 276 (479)
T PRK07807 236 LEAGVDVLVIDTAHGHQEKMLEAIRAVRALDPGVPLVAGNV 276 (479)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 97699899975457664899999999984089885787432
No 83
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=77.43 E-value=4.2 Score=21.93 Aligned_cols=103 Identities=28% Similarity=0.424 Sum_probs=59.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC--C-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC--CC
Q ss_conf 15765379999999997301447986133271001143100--1-3654462899999999999999628973524--66
Q gi|255764463|r 103 IIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI--L-CDGEIVNDETIELISHAAVIQADAGADIIAP--SE 177 (337)
Q Consensus 103 A~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi--~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP--Sd 177 (337)
+++-++-+.+|.+ |.+.+++..|+.-+ |-|..|-.-+ + .+| |.--.|+--=..||+.-|+||+++|+| +-
T Consensus 72 s~d~e~mi~eA~~-L~~~~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgR 146 (239)
T COG0176 72 SFDAEAMIEEARR-LAKLIDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGR 146 (239)
T ss_pred CCCHHHHHHHHHH-HHHHCCCCCEEEEE---CCCHHHHHHHHHHHHCC-CEEEEEEEECHHHHHHHHHHCCEEEEEECCH
T ss_conf 2368999999999-99864877738994---88887899999999789-7065888846899999998289289751230
Q ss_pred CCC------CHHHHHHHHHHHCCCCCCCEECHHHHHHHH
Q ss_conf 767------799999999987788577300336664354
Q gi|255764463|r 178 MMD------GRVQEIRKKLDSHGHINVGIMPYVAKFNSS 210 (337)
Q Consensus 178 MMD------GrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~ 210 (337)
|.| +-|..+|+.++..+...+.++.=|.+|.-.
T Consensus 147 i~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~~~~~~ 185 (239)
T COG0176 147 IDDWGIDGMLGIAEAREIYDYYKQHGAKTLVASARFPNH 185 (239)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 776166826899999999997360454477766772878
No 84
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=77.27 E-value=6.8 Score=20.50 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH-------HHHCCC
Q ss_conf 2899999999999999628973524667677999999999877885773003366643543010167-------531024
Q gi|255764463|r 151 NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD-------AISTRD 223 (337)
Q Consensus 151 ND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd-------A~~S~p 223 (337)
---+.+..++++--++..|+|+|- |.+++. |-=|.||+| ++.-+-
T Consensus 166 lGl~~e~~a~~~yE~~~GGvD~iK----------------DDEnl~------------s~~f~~~e~R~~~~m~~i~~ae 217 (429)
T COG1850 166 LGLSPEEYAELAYELLSGGVDFIK----------------DDENLT------------SPPFNRFEERVAKIMEAIDKAE 217 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEC----------------CHHHCC------------CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 579989999999999845764441----------------623205------------8656658999999999999988
Q ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH--CCCCEEE
Q ss_conf 467777443157211-4788988887664089879955311458999999962--4998999
Q gi|255764463|r 224 LLKGDKKTYYLDPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEK--FGLPTFA 282 (337)
Q Consensus 224 ~~~gdr~sYQmd~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~--~~~P~~a 282 (337)
+..|-|+.|-.+... .+|-+|.+++-.+.|++++||-=--.=.+.++-+++. ..+|+-|
T Consensus 218 aeTGekk~y~~NITa~~~EM~rrae~a~elG~~~~midi~~~G~~a~q~lre~~d~gl~iha 279 (429)
T COG1850 218 AETGEKKMYAVNITAPCEEMMRRAELAAELGANYVMIDIVVTGFTALQYLREDEDIGLAIHA 279 (429)
T ss_pred HHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCCCCEEEE
T ss_conf 86386578995046887999999999997299879999873362898998862037944785
No 85
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=77.27 E-value=5.3 Score=21.24 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCC--CCC---CCCCCCC--------HHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 379999999997301447986133271001143--100---1365446--------289999999999999962897352
Q gi|255764463|r 108 NLINEGICAIKKNIPNIGIITDVALDPFTIHGH--DGI---LCDGEIV--------NDETIELISHAAVIQADAGADIIA 174 (337)
Q Consensus 108 glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGH--cGi---~~~g~Id--------ND~Tl~~L~k~Al~~A~AGaDivA 174 (337)
..+.+|++.+|++.++=.-+.-.+..|+|.-++ +|. +.+ -.. -+...+.+.+.+..+.+||||+|.
T Consensus 119 ~~v~eai~~l~~~l~~~~plig~~~gP~Tla~~l~~G~~~~~~~-l~~~pe~~~~ll~~~t~~~~~~~~~qi~aGad~i~ 197 (337)
T pfam01208 119 PYVLEAIRLLRKELGDEVPLIGFVGGPFTLASYLVEGFEKFKKL-MYKDPELVHALLDKLTDAVIEYLKAQIEAGADAIQ 197 (337)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 89999999999975999747986477899999997798999999-99799999999999999999999999982996799
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 46676779999999998778857730033666435430101-67531024467777443157211478898888766408
Q gi|255764463|r 175 PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 175 PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
-.|-. ..+||- +.--.|..|+ +.....-....+..-.|..- .+ ...+.+... +-|
T Consensus 198 i~Ds~------------------~~~ls~--~~~~ef~~p~~~~i~~~ik~~~~~~~ilh~c-G~-~~~~~~~l~--~~~ 253 (337)
T pfam01208 198 IFDSW------------------AGLLSP--EDFREFVLPYLKRIVDEVKARGPGPVILHIC-GN-GTPILEDMA--ETG 253 (337)
T ss_pred EECCC------------------CCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CC-HHHHHHHHH--HCC
T ss_conf 83478------------------887898--9999998999999999999868997499857-96-689999998--649
Q ss_pred CCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CEEEE
Q ss_conf 98799553114589999999624-9989999346189999999988897889999999999977269--99982
Q gi|255764463|r 254 ADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGC--DGIFT 324 (337)
Q Consensus 254 AD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGA--d~Iit 324 (337)
+|.+=+-...+ +..+++.+ ++.+. =+++. . ++ .| +.+++.-|+..+++..+. .+|+.
T Consensus 254 ~~~~s~d~~~~----l~~~~~~~~~~~i~-GN~dp-~-~l-----~g--t~e~i~~~~~~~l~~~~~~~g~Il~ 313 (337)
T pfam01208 254 ADVISLDWTVD----LAEAKRIVGDVALQ-GNLDP-A-LL-----LG--TPEEIEAEVKEILEAAGGGRGHIFN 313 (337)
T ss_pred CCEEECCCCCC----HHHHHHHCCCCEEE-ECCCH-H-HH-----CC--CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88884476568----99999976995389-68986-7-85-----69--9999999999999982899998985
No 86
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=76.64 E-value=7.1 Score=20.38 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 14589999999624998999934618999999998889788999999999997726999982
Q gi|255764463|r 263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
.+-+++++.+++.+++|+-+ || |.-+.++ +..++..|++.++-
T Consensus 175 G~d~~l~~~i~~~~~~pvi~---sG-----------Gv~s~~d-----i~~l~~~g~~gviv 217 (233)
T cd04723 175 GPDLELLERLAARADIPVIA---AG-----------GVRSVED-----LELLKKLGASGALV 217 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEE---EC-----------CCCCHHH-----HHHHHHCCCCEEEE
T ss_conf 77999999999868998999---88-----------9999999-----99999789989998
No 87
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=76.40 E-value=4.2 Score=21.93 Aligned_cols=160 Identities=19% Similarity=0.294 Sum_probs=103.3
Q ss_pred EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 66675898811048887863288999999999999-88893676330256334554454215765379999999997301
Q gi|255764463|r 44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP 122 (337)
Q Consensus 44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp 122 (337)
+|+.+|-...-.|=+=-+ .-|+-+.++++.+++ +-|+ +|--+- + .| ..|-|.. -|.+.+-.|
T Consensus 19 ~g~~~GVTTNPsliak~~--n~~f~evl~ei~~~vGd~G~----vsae~~-S-~d--------AegMv~E-ak~La~~~~ 81 (216)
T TIGR00875 19 LGILAGVTTNPSLIAKEG--NRSFWEVLKEIQEVVGDEGP----VSAEVI-S-LD--------AEGMVEE-AKELAKLAP 81 (216)
T ss_pred CCCCCCCCCCHHHHHHCC--CCCHHHHHHHHHHHHCCCCC----EEHHHH-H-HH--------HHHHHHH-HHHHHHHCC
T ss_conf 245477345633420136--88788999999987458885----534343-0-41--------7889999-999997528
Q ss_pred CCEEEECCCCCHHHCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC---------CCCCCCHHHHHHHHHH
Q ss_conf 4479861332710011431001--3654462899999999999999628973524---------6676779999999998
Q gi|255764463|r 123 NIGIITDVALDPFTIHGHDGIL--CDGEIVNDETIELISHAAVIQADAGADIIAP---------SEMMDGRVQEIRKKLD 191 (337)
Q Consensus 123 dl~vi~DVcLc~YT~hGHcGi~--~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP---------SdMMDGrV~aIR~~Ld 191 (337)
+++|=. |-|++|=--|- ...-|----|+=-=+.|||.-|+|||.+|+| -+=| -.|..+++-++
T Consensus 82 nivvKI-----P~T~~GLkAv~~L~~eGI~TnvTlvfsa~QaLlAA~AGA~YVsPfvgRlDdigg~G~-~li~e~~~i~~ 155 (216)
T TIGR00875 82 NIVVKI-----PMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGL-KLIEEVKTIFE 155 (216)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHCCCCEEEHHEECHHHHHHHHHCCCCEECCHHHHHHHCCCCHH-HHHHHHHHHHH
T ss_conf 978961-----478537999999985798312010235458999998189142440110131277505-78999999997
Q ss_pred HCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 7788577300336664354301016753102446777744315721
Q gi|255764463|r 192 SHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPA 237 (337)
Q Consensus 192 ~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~ 237 (337)
.+++. +.|+.=|.|. | |.+.+|+-. | =.+-||++.
T Consensus 156 ~h~~~-t~vi~AS~rh------P-~hvle~al~--G-a~~~t~p~~ 190 (216)
T TIGR00875 156 NHALD-TEVIAASVRH------P-RHVLEAALI--G-ADIATLPLD 190 (216)
T ss_pred HCCCC-CEEEEEECCC------H-HHHHHHHHH--C-CCEEECCHH
T ss_conf 30876-4266540237------1-789999970--6-554405789
No 88
>KOG2335 consensus
Probab=75.94 E-value=6 Score=20.86 Aligned_cols=191 Identities=18% Similarity=0.263 Sum_probs=112.3
Q ss_pred HHHHHHHCCC---CCHHHCCCCEEEECCCCCEEECCCCCCCC----CC---CHHHHHHHHHHHHHCCCCEEEEEECCCC-
Q ss_conf 8999863477---88877331166675898811048887863----28---8999999999999888936763302563-
Q gi|255764463|r 25 WIREMVREHR---LSVSDLILPIFLTSGEKTVESINSMPDVM----RM---SIDVAVEKIKQVADLGIPAIAIFPNIPM- 93 (337)
Q Consensus 25 ~iR~Lv~Et~---Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~----R~---Sid~L~~eie~~~~lGI~av~LFp~I~~- 93 (337)
.-|.|++... +-.-.+.--.||+....-+..-..-|+.. ++ ..+.+++.++-....+ ..|-|=-+-|+
T Consensus 33 ~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~ 111 (358)
T KOG2335 33 AFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQK 111 (358)
T ss_pred HHHHHHHHHCCCEEECHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCCCCCCCCHH
T ss_conf 9999999968765722478888874174210001136877786699974799899999999865334-720415899878
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf -3455445421576537999999999730144798613327100114310013654462899999999999999628973
Q gi|255764463|r 94 -DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI 172 (337)
Q Consensus 94 -~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi 172 (337)
.+|--.|+.-.++-.||+..|+.++.+.+.- |-+ -|-|. .|++.|++.+. ..-.|||++
T Consensus 112 ~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~p-Vs~-----------KIRI~----~d~~kTvd~ak----~~e~aG~~~ 171 (358)
T KOG2335 112 VAKRGGYGAFLMDNPELVGEMVSAVRANLNVP-VSV-----------KIRIF----VDLEKTVDYAK----MLEDAGVSL 171 (358)
T ss_pred HHHCCCCCCEECCCHHHHHHHHHHHHHHCCCC-EEE-----------EEEEC----CCHHHHHHHHH----HHHHCCCCE
T ss_conf 88437726000238899999999998525998-699-----------99855----76787899999----998679868
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH
Q ss_conf 52466767799999999987788577300336664354301016753102446777744315721147-88988887664
Q gi|255764463|r 173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ-EAIREASIDIQ 251 (337)
Q Consensus 173 vAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~-eA~~e~~~D~~ 251 (337)
+.- -||...-|.. .++...|.+-++ -|+...+-|-+ +|+. ..+.++.+...
T Consensus 172 ltV----HGRtr~~kg~-------~~~pad~~~i~~------v~~~~~~ipvi-----------aNGnI~~~~d~~~~~~ 223 (358)
T KOG2335 172 LTV----HGRTREQKGL-------KTGPADWEAIKA------VRENVPDIPVI-----------ANGNILSLEDVERCLK 223 (358)
T ss_pred EEE----ECCCHHHCCC-------CCCCCCHHHHHH------HHHHCCCCCEE-----------EECCCCCHHHHHHHHH
T ss_conf 999----3655776288-------888767799999------99747677089-----------5088576899999999
Q ss_pred -CCCCEEEEC------CCHH
Q ss_conf -089879955------3114
Q gi|255764463|r 252 -ESADMLLVK------PGLP 264 (337)
Q Consensus 252 -EGAD~lMVK------Pa~~ 264 (337)
.|||=||+- |+++
T Consensus 224 ~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335 224 YTGADGVMSARGLLYNPALF 243 (358)
T ss_pred HHCCCEEEECCHHHCCCHHH
T ss_conf 75874688600000384120
No 89
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=75.44 E-value=1.9 Score=24.31 Aligned_cols=111 Identities=23% Similarity=0.330 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCC
Q ss_conf 899999999999988893676330256334554454215765379999999997301-4479861332710011431001
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~ 144 (337)
+++..+..++-+++-||+.+=+ -..++.+. .|||.|++++| |+.|=+
T Consensus 18 ~~~~A~~lA~aL~egG~~~~Ev------TlRT~~A~----------~aI~~l~~~~P~~~~iGA---------------- 65 (205)
T TIGR01182 18 DVEDALPLAKALIEGGLRVLEV------TLRTPVAL----------EAIRALRKEVPKDALIGA---------------- 65 (205)
T ss_pred CHHHHHHHHHHHHHCCCEEEEE------EECCCCHH----------HHHHHHHHHCCCCCEECC----------------
T ss_conf 7877789999998679808988------51472168----------999999972823348716----------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH-----------------HHHHHHHHHCCCCCCCE----ECH
Q ss_conf 365446289999999999999962897352466767799-----------------99999998778857730----033
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRV-----------------QEIRKKLDSHGHINVGI----MPY 203 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV-----------------~aIR~~Ld~~g~~~~~I----msY 203 (337)
|-|.|.+ |...-.+||||++=-=..-+--+ ..|=++| +.||+-+.. .+=
T Consensus 66 --GTVL~~~-------Q~~~A~~AGA~F~vSPG~~p~l~~~~~~~~~P~iPGV~tpsEi~~Al-~~G~~~lKlFPAe~~G 135 (205)
T TIGR01182 66 --GTVLNPE-------QLRQAVAAGAQFIVSPGLTPELAKHAKDKGIPIIPGVATPSEIMLAL-ELGITALKLFPAEVVG 135 (205)
T ss_pred --CCCCCHH-------HHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHH-HCCCCEEEECCCCCCC
T ss_conf --7648989-------99999970895787697888999998508881217776878999998-7577465212562353
Q ss_pred HHHHHHHHHCCHHHH
Q ss_conf 666435430101675
Q gi|255764463|r 204 VAKFNSSFYGPYRDA 218 (337)
Q Consensus 204 saKfaS~fYgPFRdA 218 (337)
..||=.+|+|||-+.
T Consensus 136 G~~~lkAL~GPf~~v 150 (205)
T TIGR01182 136 GVKMLKALAGPFPQV 150 (205)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 089999731657898
No 90
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.21 E-value=7.7 Score=20.14 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCC
Q ss_conf 2889999999999998889367633025633455445421576537999999999730-144798613327100114310
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcG 142 (337)
....+.+.+.++.+++.|+.++..++.+-+. -+-...+. .+.++...+.. +.+-|++-+
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~-----~~Ls~~Er---~~v~~~~~e~~~gr~pvi~G~------------ 84 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGEC-----ATLTWEEK---QAFVATVVETVAGRVPVFVGA------------ 84 (309)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCHH-----HHCCHHHH---HHHHHHHHHHHCCCCEEEECC------------
T ss_conf 7379999999999997699989979235004-----34879999---999999999838985099605------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCC---CCCCHHHHHHHHHHHCCCCCCCEECHHH
Q ss_conf 0136544628999999999999996289735---2466---7677999999999877885773003366
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADII---APSE---MMDGRVQEIRKKLDSHGHINVGIMPYVA 205 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYsa 205 (337)
+. .+...-.+.+...+++|||-+ .|.= -.+|-+..-|..-|+. .+++||-|-.
T Consensus 85 ----~~----~~t~~ai~~a~~a~~~Gad~~lv~~P~y~~~~~~~l~~~~~~ia~a~--~~lPiilYn~ 143 (309)
T cd00952 85 ----TT----LNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV--PEMAIAIYAN 143 (309)
T ss_pred ----CC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEC
T ss_conf ----75----05999999999998469899998888588999999999999999867--8998899968
No 91
>PRK07491 consensus
Probab=74.69 E-value=0.25 Score=30.23 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=63.2
Q ss_pred CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 86328899999----9999999888936763302563345544542157653-----79999999997301447986133
Q gi|255764463|r 61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN-----LINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg-----lv~rAIr~IK~~fpdl~vi~DVc 131 (337)
|+.|-..|..- +....+++.|.-.--++|+.-+.+| |+...+.|. .....+.++|-.|..-+.+|--.
T Consensus 169 gisRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvpv~~~~~~---g~~~~~~De~~R~~tt~e~La~L~p~f~~~GtvTagn 245 (392)
T PRK07491 169 QITREEQDEFAVASQNKAEAAQKAGRFKDEIVPFTIKTRK---GDVVVDADEYIRHGATIEAMAKLKPAFDKDGTVTAAN 245 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCC---CCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEECCC
T ss_conf 9899999999999999999999849951207788732566---7520265545578867666864688645678641566
Q ss_pred CCHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHH
Q ss_conf 2710011431001-365446289999999999999962897352466767799999999987788--5773003366643
Q gi|255764463|r 132 LDPFTIHGHDGIL-CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFN 208 (337)
Q Consensus 132 Lc~YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfa 208 (337)
-|+.| +|-+.++ ...+--....++-|+++ +.++.+|+| |+.|.-|-|.|+|++|+.+|. .|+-+.---==||
T Consensus 246 ss~~~-DGAaa~ll~s~~~a~~~gl~pla~i-~~~~~~g~d---P~~m~~gpv~A~~k~L~~agl~~~Did~~EinEAFA 320 (392)
T PRK07491 246 ASGIN-DGAAAVVLMSADEAAKRGITPLARI-VSWATAGVD---PSIMGTGPIPASRKALEKAGWSVGDLDLVEANEAFA 320 (392)
T ss_pred CCCCC-CHHHHHHHHCHHHHHHCCCCCEEEE-EEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHH
T ss_conf 88542-5889898747999997799952999-941388748---778083889999999997699855688777505678
Q ss_pred HH
Q ss_conf 54
Q gi|255764463|r 209 SS 210 (337)
Q Consensus 209 S~ 210 (337)
+.
T Consensus 321 ~q 322 (392)
T PRK07491 321 AQ 322 (392)
T ss_pred HH
T ss_conf 88
No 92
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=74.39 E-value=5.9 Score=20.90 Aligned_cols=186 Identities=19% Similarity=0.196 Sum_probs=85.9
Q ss_pred CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 16667589881104888786328899999999999988893676330256334554454215765379999999997301
Q gi|255764463|r 43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP 122 (337)
Q Consensus 43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp 122 (337)
|+|||-.= --.--..-|.+...|++.|.++++.+..+|++.+.+-|+ ...+.. ++.-+.+.++.|++.+.
T Consensus 60 ~~~~Ha~Y-lINLas~~~e~~~kS~~~l~~el~~~~~lG~~~vV~HpG--s~~~~~-------~e~~i~~i~~~l~~vl~ 129 (273)
T smart00518 60 DVSVHAPY-LINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPG--SYLKQS-------KEEALNRIIESLNEVID 129 (273)
T ss_pred CEEEECCC-EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC--CCCCCC-------HHHHHHHHHHHHHHHHH
T ss_conf 66864421-004579988999999999999999999809985873453--135888-------89999999999999982
Q ss_pred CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHH---------HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH-
Q ss_conf 447986133271001143100136544628999999---------9999999962897352466767799999999987-
Q gi|255764463|r 123 NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELI---------SHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS- 192 (337)
Q Consensus 123 dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L---------~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~- 192 (337)
+. .++-++==|+-|.-.-+...-=+-.+.++.+ -.-+=.+| ||-|+-.|.+ -...++ .+|+
T Consensus 130 ~~---~~~~lllEntAGqG~~lG~~~eeL~~ii~~~~~~~rvgvClDTcH~fA-aGydi~t~~~----~~~~l~-~~~~~ 200 (273)
T smart00518 130 ET---KGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDTCHIFA-AGYDINTVEG----FEKVLE-EFENV 200 (273)
T ss_pred CC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHC-CCCCCCCHHH----HHHHHH-HHHHH
T ss_conf 36---986799745789988468689999999997378465378752020222-6578686888----999999-99987
Q ss_pred CCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC--CCCCCCCCCCCCH-HHHHHHHHHHHHH-CCCCEEEECCCH
Q ss_conf 788577300336664354301016753102446--7777443157211-4788988887664-089879955311
Q gi|255764463|r 193 HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL--KGDKKTYYLDPAN-VQEAIREASIDIQ-ESADMLLVKPGL 263 (337)
Q Consensus 193 ~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~--~gdr~sYQmd~~n-~~eA~~e~~~D~~-EGAD~lMVKPa~ 263 (337)
-|+..+..+-- =+|.-.+ ..||. -.+.-.. ..++++....|.. .+--+++=-|..
T Consensus 201 iGl~~l~~iHl---------------NDSk~~~GS~~DRH-~~IG~G~IG~~~~~~l~~~~~~~~ip~ILETP~~ 259 (273)
T smart00518 201 LGLEYLKAIHL---------------NDSKIELGSGKDRH-ENLGEGYIGFEPFRLLMADKRFDGIPLILETPPG 259 (273)
T ss_pred HCHHHEEEEEE---------------CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHCCHHHCCCCEEEECCCC
T ss_conf 38556458876---------------68876446788755-5678986688999999819746499889968999
No 93
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.37 E-value=8.1 Score=20.00 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf 328899999999999988893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337)
.+...+.+.+.++.+.+.|+..+.+++...+-. +++.+ =-.+.++...+..+ ..-||+-|.-
T Consensus 16 g~iD~~~l~~~v~~l~~~Gv~gi~v~GstGE~~-------~Ls~~-Er~~l~~~~~~~~~~~~~vi~gv~~--------- 78 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESP-------TLSDE-EHEAVIEAVVEAVNGRVPVIAGTGS--------- 78 (284)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-------HCCHH-HHHHHHHHHHHHCCCCCEEEEECCC---------
T ss_conf 696999999999999976999899684351242-------48999-9999999999971897507750787---------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE---ECCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf 00136544628999999999999996289735---24667---6779999999998778857730033666435430101
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII---APSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY 215 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv---APSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF 215 (337)
.+.+.-.++|...+++|||.| .|.-. .|+-+...+...++ .+.+||-|-.
T Consensus 79 -----------~~t~~~i~~a~~A~~~Gadai~v~pP~y~~~s~~~l~~~~~~ia~a---~~lPi~lYn~---------- 134 (284)
T cd00950 79 -----------NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA---TDLPVILYNV---------- 134 (284)
T ss_pred -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC----------
T ss_conf -----------7899999999999983999899626657897999999999999755---5997798737----------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 6753102446777744315721147889888876640898799553114589999999624998999934618
Q gi|255764463|r 216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGE 288 (337)
Q Consensus 216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGE 288 (337)
|... .+.+++ +-+.+.. +=-.++-||-+-+-++-+.++.+..+-.+..|.-+++
T Consensus 135 -------P~~t----g~~l~~----~~l~~L~----~~pnv~giK~ss~d~~~~~~~~~~~~~~~~v~~G~d~ 188 (284)
T cd00950 135 -------PGRT----GVNIEP----ETVLRLA----EHPNIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA 188 (284)
T ss_pred -------CCCC----CCCCCH----HHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHH
T ss_conf -------6411----678888----9999984----7999899985889899999999866987546448689
No 94
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=74.27 E-value=8.1 Score=19.98 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECC--------CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 999999999999996289735246--------676779999999998778857730033666435430101675310244
Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPS--------EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337)
Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPS--------dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337)
-|-+.+++++-..+..|.|+|-=- .=+.-||.++.++++ -+-.
T Consensus 172 Lsp~~~a~~~ye~~~GGvDfiKDDE~l~~~pf~p~~eRv~~v~~a~~-----------------------------~a~~ 222 (467)
T PRK04208 172 LSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVMEAID-----------------------------KAEA 222 (467)
T ss_pred CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH-----------------------------HHHH
T ss_conf 99799999999997048756406644669888978999999999999-----------------------------9999
Q ss_pred CCCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHCC
Q ss_conf 677774431572114--7889888876640898799553114589999999---62499899993461899999999888
Q gi|255764463|r 225 LKGDKKTYYLDPANV--QEAIREASIDIQESADMLLVKPGLPYLDVCFRIK---EKFGLPTFAYQVSGEYAMIKAASLQG 299 (337)
Q Consensus 225 ~~gdr~sYQmd~~n~--~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k---~~~~~P~~aYqVSGEYami~~a~~~g 299 (337)
-.|.|+.|-.|.... +|-++-++.=.+.|+.++||-.-..=++.++.++ +..++|+.+ |-.|-=++-. ....|
T Consensus 223 eTGe~k~y~~NiTa~~~~em~~Rae~~~e~G~~~vMvd~~~~G~~al~~lr~~~r~~~l~IHa-HRA~~ga~tr-~p~~G 300 (467)
T PRK04208 223 ETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIIMIDVVTAGWTALQSLREWCRDNGLALHA-HRAMHAAFTR-NPNHG 300 (467)
T ss_pred HHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEE-ECCCCHHHCC-CCCCC
T ss_conf 768951899862279899999999999975996798974303307999999977653965885-0153212116-87666
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9788999999999997726999982
Q gi|255764463|r 300 WINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 300 ~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
+ +.. + .-.-.+=||+|.|.+
T Consensus 301 i-s~~-v---l~Kl~RLaG~D~ih~ 320 (467)
T PRK04208 301 I-SFR-V---LAKLLRLIGVDHLHT 320 (467)
T ss_pred C-CHH-H---HHHHHHHCCCCEEEC
T ss_conf 4-399-9---999998718783242
No 95
>KOG3111 consensus
Probab=73.83 E-value=4 Score=22.09 Aligned_cols=148 Identities=25% Similarity=0.304 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCH-----------HHHHHHHHHHCCCCCCCEECHH--------HHHHHHHHC
Q ss_conf 999999999999996289735246676779-----------9999999987788577300336--------664354301
Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPSEMMDGR-----------VQEIRKKLDSHGHINVGIMPYV--------AKFNSSFYG 213 (337)
Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-----------V~aIR~~Ld~~g~~~~~ImsYs--------aKfaS~fYg 213 (337)
.-+..|+++....-.+|||++- =|-|||+ |.++|+.++...|.|+-.|--. +|---+.|-
T Consensus 14 ~dfanL~~E~~~~~~~GadwlH-lDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~Peq~v~~~a~agas~~t 92 (224)
T KOG3111 14 SDFANLAAECKKMLDAGADWLH-LDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEE
T ss_conf 3067899999999974987587-860147104774336188999985258885236787646988876799864775699
Q ss_pred CHHHHHHCC------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE---ECCCH-------HHHHHHHHHHHHCC
Q ss_conf 016753102------446777744315721147889888876640898799---55311-------45899999996249
Q gi|255764463|r 214 PYRDAISTR------DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLL---VKPGL-------PYLDVCFRIKEKFG 277 (337)
Q Consensus 214 PFRdA~~S~------p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM---VKPa~-------~yLDii~~~k~~~~ 277 (337)
=.-+++.+- -.-+|=|-.--+.|...-|.+... .+-.||+. |+||. -.+.-++.+|+++.
T Consensus 93 fH~E~~q~~~~lv~~ir~~gmk~G~alkPgT~Ve~~~~~----~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp 168 (224)
T KOG3111 93 FHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPL----AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP 168 (224)
T ss_pred EEEEECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH----HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 986432578999999997497566874899958999976----4102579999854897504578999899999998689
Q ss_pred CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 98999934618999999998889788999999999997726999982
Q gi|255764463|r 278 LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 278 ~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
-+ --||-|- +-.++....--|||++|+.
T Consensus 169 ~l--~ieVDGG-----------------v~p~ti~~~a~AGAN~iVa 196 (224)
T KOG3111 169 NL--DIEVDGG-----------------VGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred CC--EEEECCC-----------------CCCCHHHHHHHCCCCEEEE
T ss_conf 84--3885488-----------------6821377998758887986
No 96
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=73.49 E-value=8.5 Score=19.86 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
+.+.++.+++.+.+ |.-.|=+= ++ -.++. ..+.+...++.|++..+--+|+| + -+..+-|-.
T Consensus 8 ~~~~~~~~~~~~~~-~aD~vE~R--~D-~l~~~-------~~~~i~~~l~~l~~~~~~PiI~T-~-----R~~~eGG~~- 69 (222)
T pfam01487 8 SLEEALAELEELKE-GADAVELR--VD-LLENV-------DAEDVSEQLSALRESTGLPIIFT-V-----RTKSEGGRF- 69 (222)
T ss_pred CHHHHHHHHHHHHH-CCCEEEEE--EC-CCCCC-------CHHHHHHHHHHHHHHCCCCEEEE-E-----CCHHHCCCC-
T ss_conf 99999999998610-89989998--60-35687-------87899999999998389977999-6-----877888998-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 65446289999999999999962897352466767799999999987788577300336664354301016753102446
Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLL 225 (337)
Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~ 225 (337)
.++.++=++.|.. .++.|+|+|-=--....+. ++..+......-..|+||- -|. .+|..
T Consensus 70 --~~~~~~~~~ll~~----~~~~~~d~iDiE~~~~~~~--~~~~~~~~~~~~kvI~S~H-~f~------------~tp~~ 128 (222)
T pfam01487 70 --EGSEEEYLELLKE----ALRLGPDYIDIELSSAPEE--LLSVIAAKKGGTKIILSYH-DFE------------GTPSW 128 (222)
T ss_pred --CCCHHHHHHHHHH----HHHHCCCEEEEECCCCCHH--HHHHHHHHCCCCEEEEEEC-CCC------------CCCCH
T ss_conf --8999999999999----9975898899977778136--8999997428978999845-898------------99699
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEE-ECCCHHHHHHHH------HHHHHCCCCEEEEECC--HHHHHHHHH
Q ss_conf 777744315721147889888876-640898799-553114589999------9996249989999346--189999999
Q gi|255764463|r 226 KGDKKTYYLDPANVQEAIREASID-IQESADMLL-VKPGLPYLDVCF------RIKEKFGLPTFAYQVS--GEYAMIKAA 295 (337)
Q Consensus 226 ~gdr~sYQmd~~n~~eA~~e~~~D-~~EGAD~lM-VKPa~~yLDii~------~~k~~~~~P~~aYqVS--GEYami~~a 295 (337)
+.+.+.... .+-|||++= +-++-..-|+.+ .+++ .+.|+.+|.-. |-++-+-+.
T Consensus 129 ---------------~~l~~~~~~~~~~gaDivKia~~a~s~~D~~~l~~~~~~~~~-~~~p~i~~~MG~~G~~SRi~~~ 192 (222)
T pfam01487 129 ---------------EELLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKS-LDKPLIAISMGELGRISRILGP 192 (222)
T ss_pred ---------------HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHH
T ss_conf ---------------999999999996399989999625988899999999998663-5998899966875278999887
Q ss_pred H
Q ss_conf 9
Q gi|255764463|r 296 S 296 (337)
Q Consensus 296 ~ 296 (337)
.
T Consensus 193 ~ 193 (222)
T pfam01487 193 V 193 (222)
T ss_pred H
T ss_conf 7
No 97
>pfam00923 Transaldolase Transaldolase.
Probab=73.08 E-value=5.1 Score=21.35 Aligned_cols=67 Identities=31% Similarity=0.328 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 576537999999999730-1447986133271001143100--13654462899999999999999628973524
Q gi|255764463|r 104 IDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 104 ~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
.|.++.+.+|.+..+.-- |+++|=. |-|..|-.-+ +....|---.|+---..|++.-|+|||++|+|
T Consensus 85 ~d~~~mi~eA~~l~~~~~~~nv~IKI-----P~t~~G~~a~~~L~~~Gi~vn~T~vfs~~Qa~~aa~Aga~~iSp 154 (244)
T pfam00923 85 DDTEGTIAEARRLIALYGRPNVLIKI-----PATWEGLKAIKELSAEGINVNVTLIFSLAQALAAAEAGASVISP 154 (244)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEE-----CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf 79999999999999852788779992-----79777999999999779965688846799999999719969999
No 98
>KOG0564 consensus
Probab=73.04 E-value=8.7 Score=19.79 Aligned_cols=204 Identities=18% Similarity=0.240 Sum_probs=110.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf 328899999999999988893676330256334554-4542157653799999999973014479861332710011431
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337)
-+.+...+-+.++.+.++||++|+-.-+=|+.--|. ...| +.-..----||-||.+++|-.- +|.-.|- -|||
T Consensus 87 tn~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e--~gF~yA~DLVr~Irs~YGDyF~---IgVAgYP-Eghp 160 (590)
T KOG0564 87 TNMPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEE--GGFRYAVDLVRYIRSKYGDYFC---IGVAGYP-EGHP 160 (590)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCEEE---EEECCCC-CCCC
T ss_conf 57618999999999998072242442589999865320035--7712579999999998288478---8750378-7776
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH-----HHHHHHHHHHCCCCCC----CEECHHHHHHHHHH
Q ss_conf 00136544628999999999999996289735246676779-----9999999987788577----30033666435430
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR-----VQEIRKKLDSHGHINV----GIMPYVAKFNSSFY 212 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-----V~aIR~~Ld~~g~~~~----~ImsYsaKfaS~fY 212 (337)
-..... -.+.++.|.+ --+||||.|---=.-|-- |...|+ .|- ++ +||+-. =|
T Consensus 161 e~~~~~---~~~Dl~yLk~----KvdaGaDFIiTQlFYd~e~flkfv~~cR~----~gi-~~PIvPGIMPI~------~Y 222 (590)
T KOG0564 161 EAPSHD---YLADLPYLKE----KVDAGADFIITQLFYDVETFLKFVKDCRA----AGI-NVPIVPGIMPIQ------SY 222 (590)
T ss_pred CCCCCC---HHHHHHHHHH----HHCCCCHHHHHHHHCCHHHHHHHHHHHHH----HCC-CCCCCCCCCCCH------HH
T ss_conf 776544---1221689998----52154214355464079999999999998----378-888555543102------08
Q ss_pred CCHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCHHHH
Q ss_conf 1016753102446777744315-721147889888876640898799553114589999999624998-99993461899
Q gi|255764463|r 213 GPYRDAISTRDLLKGDKKTYYL-DPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLP-TFAYQVSGEYA 290 (337)
Q Consensus 213 gPFRdA~~S~p~~~gdr~sYQm-d~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P-~~aYqVSGEYa 290 (337)
+-|+-.++=+..-.-.-=.=++ +...-+||+|+.-.+. -.++++++-++..+| +--|-.-=|-|
T Consensus 223 ~sf~R~~kls~~~IP~~~~~~L~piKddDeaVr~~Gvel--------------~vemc~kll~~g~v~~lHfyTlNlEks 288 (590)
T KOG0564 223 RSFLRIAKLSGVSIPQHLMDRLEPIKDDDEAVRNYGVEL--------------IVEMCRKLLDSGVVPGLHFYTLNLEKS 288 (590)
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHH--------------HHHHHHHHHHCCCCCEEEEEEECHHHH
T ss_conf 999999987278787999973366788189999972999--------------999999998659604048997137778
Q ss_pred HHHHHHHCCCCCHH
Q ss_conf 99999988897889
Q gi|255764463|r 291 MIKAASLQGWINKN 304 (337)
Q Consensus 291 mi~~a~~~g~~d~~ 304 (337)
-..-....|.+++.
T Consensus 289 v~~IL~~lgll~~~ 302 (590)
T KOG0564 289 VAAILKRLGLLDEL 302 (590)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99999864752000
No 99
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.92 E-value=8.7 Score=19.77 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH
Q ss_conf 4888786328899999999999988893676330256334554454215765379999999997301-447986133271
Q gi|255764463|r 56 INSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP 134 (337)
Q Consensus 56 I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~ 134 (337)
|.-+-...+...+.+.+.++.+.+.|+..+.+++..-+.. +-+..+ -.+.++...+..+ .+-|++
T Consensus 9 iTPF~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~-----~Ls~eE---r~~v~~~~~~~~~g~~~vi~------ 74 (289)
T cd00951 9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFF-----SLTPDE---YAQVVRAAVEETAGRVPVLA------ 74 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCC-----CCCHHH---HHHHHHHHHHHCCCCCEEEE------
T ss_conf 3876899597999999999999977999999793300621-----289999---99999999998189851740------
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--CC----CCCCCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf 0011431001365446289999999999999962897352--46----6767799999999987788577300336
Q gi|255764463|r 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA--PS----EMMDGRVQEIRKKLDSHGHINVGIMPYV 204 (337)
Q Consensus 135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA--PS----dMMDGrV~aIR~~Ld~~g~~~~~ImsYs 204 (337)
|+| . .-+++ .+.|-...++|||.|. |. --.||-+...+...|.. +.+||-|-
T Consensus 75 -----g~g--~----~t~~~----i~la~~a~~~Gadav~v~pPy~~~~~~~~l~~~~~~ia~a~---~lpi~lYn 132 (289)
T cd00951 75 -----GAG--Y----GTATA----IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST---DLGVIVYN 132 (289)
T ss_pred -----CCC--C----HHHHH----HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC---CCCEEECC
T ss_conf -----676--3----19999----99999999759999997698888999999999999999846---99866148
No 100
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=72.89 E-value=6.7 Score=20.53 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC--C-CCC-----------CCC---CCHHHHHHHHHHHHHHHHHC
Q ss_conf 53799999999973014-479861332710011431--0-013-----------654---46289999999999999962
Q gi|255764463|r 107 DNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD--G-ILC-----------DGE---IVNDETIELISHAAVIQADA 168 (337)
Q Consensus 107 dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc--G-i~~-----------~g~---IdND~Tl~~L~k~Al~~A~A 168 (337)
-.+|..||+.+|++.|+ .-+| --|=.|+|--... | --+ +-+ -.-+...+.+.+-+..|.+|
T Consensus 121 l~~v~eai~~~r~~l~~~~pLI-GF~GaPwTLasYmieG~~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~i~yl~~Qi~a 199 (347)
T PRK00115 121 LPYVLEAVRLLRRELPGEVPLI-GFAGSPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEA 199 (347)
T ss_pred HHHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3799999999999728888657-644765999999984889846799999875199999999999999999999999981
Q ss_pred CCCEEECCCCCCC
Q ss_conf 8973524667677
Q gi|255764463|r 169 GADIIAPSEMMDG 181 (337)
Q Consensus 169 GaDivAPSdMMDG 181 (337)
|||+|---|--=|
T Consensus 200 GAd~iqIFDSwag 212 (347)
T PRK00115 200 GAQAVQIFDSWAG 212 (347)
T ss_pred CCCEEEEECCCCC
T ss_conf 9987885055334
No 101
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=72.44 E-value=8.9 Score=19.70 Aligned_cols=169 Identities=24% Similarity=0.304 Sum_probs=85.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 88786328899999999999988893676330256334554454215765379999999997301447986133271001
Q gi|255764463|r 58 SMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 58 SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
..||---++.+-+..-+.-+..-|=.++=.= ++ .-|++||+.. ++-||
T Consensus 13 A~~~ePl~~~~im~~mA~Aa~~gGA~giR~~-------------------~~--~dI~aik~~v-~lPII---------- 60 (222)
T PRK01130 13 ALPGEPLHSPEIMAAMALAAEQGGAVGIRAN-------------------GV--EDIKAIREVV-DVPII---------- 60 (222)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECC-------------------CH--HHHHHHHHHC-CCCEE----------
T ss_conf 7998997887999999999996896299718-------------------98--8999999847-99879----------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH---------HHHHHHHHHHCCCCCCCEECHHHHHH
Q ss_conf 143100136544628999999999999996289735246676779---------99999999877885773003366643
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR---------VQEIRKKLDSHGHINVGIMPYVAKFN 208 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr---------V~aIR~~Ld~~g~~~~~ImsYsaKfa 208 (337)
||++.+.-+-+.=+.-.-+-+...++|||||||--...--| |..||+. | +..+|+
T Consensus 61 ----Gi~K~~~~~s~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~g~~~~~~i~~i~~~-----~-~~l~MA------ 124 (222)
T PRK01130 61 ----GIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEK-----P-GQLLMA------ 124 (222)
T ss_pred ----EEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-----H-CCEEEE------
T ss_conf ----999546899973751769999999986999999846789898996899999999998-----2-987898------
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE------------CCCHHHHHHHHHHHHHC
Q ss_conf 543010167531024467777443157211478898888766408987995------------53114589999999624
Q gi|255764463|r 209 SSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV------------KPGLPYLDVCFRIKEKF 276 (337)
Q Consensus 209 S~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV------------KPa~~yLDii~~~k~~~ 276 (337)
|.++..||+... +-|+|++=- ++-.|-+++++++.+.
T Consensus 125 --------------------------D~st~eea~~A~----~~G~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~- 173 (222)
T PRK01130 125 --------------------------DCSTLEEGLAAA----KLGFDFIGTTLSGYTEYTEGETPEEPDFALLKELLKA- 173 (222)
T ss_pred --------------------------ECCCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC-
T ss_conf --------------------------548899999999----8499999723345676767787899869999999958-
Q ss_pred CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 998999934618999999998889788999999999997726999982
Q gi|255764463|r 277 GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 277 ~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
.+|+.| .|-++....+.+.| .+||..++-
T Consensus 174 ~~pvIa---------------EGri~tPe~a~~al----~~GA~aVvV 202 (222)
T PRK01130 174 GCPVIA---------------EGRINTPEQAKKAL----ELGAHAVVV 202 (222)
T ss_pred CCCEEE---------------ECCCCCHHHHHHHH----HCCCCEEEE
T ss_conf 998997---------------47989999999999----849989998
No 102
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=72.15 E-value=9.1 Score=19.65 Aligned_cols=178 Identities=19% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
-+.+.++++++.+...|.--|=+= ++ -.. .+++-.-+...++.|++.++++-+|.- +-++..-|-.
T Consensus 25 ~t~~e~~~~~~~~~~~~aDlvE~R--lD-~l~------~~~~~~~~~~~~~~i~~~~~~~PlI~T-----~R~~~EGG~~ 90 (253)
T PRK02412 25 KTIEEVAQEAEAIKYADADIIEWR--AD-FLE------KVSDVEEVLAAAPAIREKFPGKPLLFT-----FRTAKEGGEI 90 (253)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--CC-CCC------CCCCHHHHHHHHHHHHHHCCCCCEEEE-----ECCHHHCCCC
T ss_conf 999999999999844699989996--03-134------569999999999999984689978999-----2474438986
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCC-CEEECCCCC-CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC
Q ss_conf 36544628999999999999996289-735246676-7799999999987788577300336664354301016753102
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGA-DIIAPSEMM-DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR 222 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGa-DivAPSdMM-DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~ 222 (337)
.++.++-++.|. ..+++|+ |+|==--.. .-.+..+++...+.| -..|+||-
T Consensus 91 ---~~~e~~~~~il~----~~~~~~~~d~iDiEl~~~~~~~~~l~~~a~~~~--~~vI~S~H------------------ 143 (253)
T PRK02412 91 ---ELSDEEYLALYK----AVIESGLPDYIDVELFSGKDVVKEMVAFAHEHG--VKVVLSYH------------------ 143 (253)
T ss_pred ---CCCHHHHHHHHH----HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCC--CEEEEEEC------------------
T ss_conf ---699999999999----999759985797531377789999999888669--98999854------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEECCCH---HHHHHH------HHHHHH-CCCCEEEEEC--CHHH
Q ss_conf 446777744315721147889888876-64089879955311---458999------999962-4998999934--6189
Q gi|255764463|r 223 DLLKGDKKTYYLDPANVQEAIREASID-IQESADMLLVKPGL---PYLDVC------FRIKEK-FGLPTFAYQV--SGEY 289 (337)
Q Consensus 223 p~~~gdr~sYQmd~~n~~eA~~e~~~D-~~EGAD~lMVKPa~---~yLDii------~~~k~~-~~~P~~aYqV--SGEY 289 (337)
.|. +| | ..+.+.+.... .+-|||++ |=+. ..-|++ ..+++. .+.|+.+.-. -|-+
T Consensus 144 -dF~---~T----P--~~~~l~~~~~~m~~~gADIv--Kia~~~~~~~Dvl~ll~~t~~~~~~~~~~Pli~~~MG~~G~~ 211 (253)
T PRK02412 144 -DFH---KT----P--SAEEIVERLRKMEELGADIV--KIAVMPQSEQDVLTLLNATREMKELYADQPIITMSMGKLGRI 211 (253)
T ss_pred -CCC---CC----C--CHHHHHHHHHHHHHCCCCEE--EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf -898---89----7--99999999999997099989--999856988899999999999996079998899967986489
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|255764463|r 290 AMIKAA 295 (337)
Q Consensus 290 ami~~a 295 (337)
+-+...
T Consensus 212 sRi~~~ 217 (253)
T PRK02412 212 SRLAGE 217 (253)
T ss_pred HHHHHH
T ss_conf 999899
No 103
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=72.03 E-value=9.1 Score=19.63 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 89999999999998889367633025633455
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRN 97 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd 97 (337)
.++.+.+.++++.++|.+.|+++ .+|+--..
T Consensus 129 ~v~~~~~~i~~L~~~Gar~~~v~-~~pplgc~ 159 (270)
T cd01846 129 AVDNLFQALQRLYAAGARNFLVL-NLPDLGLT 159 (270)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCC
T ss_conf 99999999999998498589980-89977767
No 104
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=71.76 E-value=9.3 Score=19.60 Aligned_cols=107 Identities=24% Similarity=0.324 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCHHHCCCCCC
Q ss_conf 99999999999988893676330256334554--454215765379999999997301--44798613327100114310
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN--TGSHIIDPDNLINEGICAIKKNIP--NIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~--~GseA~n~dglv~rAIr~IK~~fp--dl~vi~DVcLc~YT~hGHcG 142 (337)
..++...|.++.+.|+-++-+=-.+-+ ||.- .|.+-...+ -.+.-|+++++.-+ +.+|++-+ + .
T Consensus 92 ~~nvartV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~-e~v~rIkAa~~a~~~~~fvi~ART------d----a 159 (289)
T COG2513 92 ALNVARTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSID-EMVDRIKAAVEARRDPDFVIIART------D----A 159 (289)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC-HHCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCCEEEEEEH------H----H
T ss_conf 889999999999758626645322550-212788898767899-999999999971558885999614------8----7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 0136544628999999999999996289735246676779999999998778
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g 194 (337)
...++ -|++++ -|..|.+||||+|-|-.+-| ...||+-.+.-.
T Consensus 160 ~~~~~---ld~AI~----Ra~AY~eAGAD~if~~al~~--~e~i~~f~~av~ 202 (289)
T COG2513 160 LLVEG---LDDAIE----RAQAYVEAGADAIFPEALTD--LEEIRAFAEAVP 202 (289)
T ss_pred HHHCC---HHHHHH----HHHHHHHCCCCEECCCCCCC--HHHHHHHHHHCC
T ss_conf 77524---799999----99999975976871366799--999999998468
No 105
>KOG1579 consensus
Probab=71.68 E-value=6.9 Score=20.46 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC----CHHHHHH---HHHHHHHC-CCEEEECCCCCHHHCCC
Q ss_conf 9999999999988893676330256334554454215765----3799999---99997301-44798613327100114
Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD----NLINEGI---CAIKKNIP-NIGIITDVALDPFTIHG 139 (337)
Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d----glv~rAI---r~IK~~fp-dl~vi~DVcLc~YT~hG 139 (337)
+.+.+.-++-+++|-.-+.-|-.= -+..+-+.+.+. .+..+.+ +.-++.+. +.. ..=-|+-||-.|=
T Consensus 53 e~V~~~H~efL~aGadIi~T~Tyq----as~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~-~v~gsiGp~~A~l 127 (317)
T KOG1579 53 EAVEQVHKEFLRAGADIISTNTYQ----ASSDGFEEYVEEEELIELYEKSVELADLARERLGEETG-YVAGSIGPYGATL 127 (317)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEE----ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCEE
T ss_conf 999999999997068589976553----03257765212677899999889999999987623434-3565126630453
Q ss_pred CCCCCCC----CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf 3100136----54462899999999999999628973524667677-999999999877885773003366643543010
Q gi|255764463|r 140 HDGILCD----GEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337)
Q Consensus 140 HcGi~~~----g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337)
|+|.--. ..+++++-.+....|.-.+.++|.|.++=---=+- --.++=+.|.+. +.+.+ |+=+|
T Consensus 128 ~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~-~~~~p-------~~is~--- 196 (317)
T KOG1579 128 ADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQEL-GPSKP-------FWISF--- 196 (317)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC-CCCCC-------EEEEE---
T ss_conf 37733115655665899999999999999986798789986148788899999999962-88886-------79999---
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----CCCHHHHHHHHHHHHH-CCCCEEEEECCHHH
Q ss_conf 167531024467777443157211478898888766408987995----5311458999999962-49989999346189
Q gi|255764463|r 215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV----KPGLPYLDVCFRIKEK-FGLPTFAYQVSGEY 289 (337)
Q Consensus 215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV----KPa~~yLDii~~~k~~-~~~P~~aYqVSGEY 289 (337)
.. +| ..--.+- +-+-|+......|+..+-| -+.-.-..++.++-.. ++.|+.+|--|||-
T Consensus 197 ---------t~-~d-~g~l~~G----~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvYPNsGe~ 261 (317)
T KOG1579 197 ---------TI-KD-EGRLRSG----ETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVYPNSGEV 261 (317)
T ss_pred ---------EE-CC-CCCCCCC----CCHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf ---------96-68-7712678----739999998606874389983357811200899998630279808994698887
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH----HHCCCEE
Q ss_conf 99999998889788999999999997----7269999
Q gi|255764463|r 290 AMIKAASLQGWINKNDAMMESLLAFK----RAGCDGI 322 (337)
Q Consensus 290 ami~~a~~~g~~d~~~~~~E~l~~~k----RAGAd~I 322 (337)
.-..+.+|.+.. -.+|.+..+. -.|+.+|
T Consensus 262 ---yd~~~g~~~~~~-~~~~~~~~~~~~~~~lGv~iI 294 (317)
T KOG1579 262 ---YDNEKGGWIPTP-FGLEPWQTYVKKAIDLGVRII 294 (317)
T ss_pred ---CCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEE
T ss_conf ---766568505898-554418999999996055132
No 106
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=71.63 E-value=9.3 Score=19.58 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=44.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 08987995531145899999996249989999346189999999988897889999999999977269999820
Q gi|255764463|r 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 252 EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
-..|.+=|=||.. -.+|+++++.++.|+.| -|++..++-+.|+| .|||+.|=|-
T Consensus 115 ~~PD~IEilPG~~-p~~i~~i~~~~~~PiIA---------------GGLI~~~edv~~aL----~aGA~aVSTS 168 (174)
T pfam04309 115 LEPDFIEVLPGVM-PKVIQEITERTNIPIIA---------------GGLIRTEEEVREAL----KAGAVAVSTS 168 (174)
T ss_pred CCCCEEEECCHHH-HHHHHHHHHHCCCCEEE---------------ECCCCCHHHHHHHH----HCCCEEEECC
T ss_conf 7989999986669-99999999747999997---------------67838899999999----8499699878
No 107
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=71.44 E-value=2.4 Score=23.54 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCEEECC--CCCCCHHHH
Q ss_conf 99999996289735246--676779999
Q gi|255764463|r 160 HAAVIQADAGADIIAPS--EMMDGRVQE 185 (337)
Q Consensus 160 k~Al~~A~AGaDivAPS--dMMDGrV~a 185 (337)
-+|+.+|+||||||+-+ .-|+-+...
T Consensus 20 G~a~gLA~AGadi~g~~~~~~~~ET~~~ 47 (249)
T TIGR01832 20 GIAVGLAEAGADIVGVGHISEPSETQQQ 47 (249)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 9999998577417851431263888999
No 108
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=71.28 E-value=3.6 Score=22.33 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCEEEE---CCCC-CHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9999997301447986---1332-71001143100136544628999
Q gi|255764463|r 113 GICAIKKNIPNIGIIT---DVAL-DPFTIHGHDGILCDGEIVNDETI 155 (337)
Q Consensus 113 AIr~IK~~fpdl~vi~---DVcL-c~YT~hGHcGi~~~g~IdND~Tl 155 (337)
.++.+ +.+|+|.+.. |+|- ||+.+|+||| .++.+++|++-
T Consensus 32 I~~rL-~~ge~i~lV~g~DDIC~~cp~~~~~~C~--~e~~~~r~r~~ 75 (135)
T COG3543 32 IAERL-KAGEDIKLVDGPDDICVSCPCKIDNHCG--DESSVERDRIA 75 (135)
T ss_pred HHHHH-HCCCCEEEEECCCCHHHCCCCCCCCCCC--CCHHHHHHHHH
T ss_conf 99986-1599769984665043237678887626--62167889999
No 109
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.94 E-value=9.6 Score=19.48 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7863288999999999999888936763
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAI 87 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~L 87 (337)
||+ .+|.+.-++-++.+.++|++.|=+
T Consensus 19 ~~~-~~s~e~K~~ia~~L~~~Gv~~IEv 45 (287)
T PRK05692 19 EKR-FIPTADKIALIDRLSAAGLSYIEV 45 (287)
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899-849999999999999849999996
No 110
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=70.91 E-value=5.5 Score=21.11 Aligned_cols=130 Identities=22% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
Q ss_conf 32889999999999998889367633025633455445421576537999999999730144798613327100114310
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG 142 (337)
.-.+.+.....++-+.+.||+.+=+=- .++. -.++|+.++++||++.|=+-.
T Consensus 11 r~~~~~~a~~~~~al~~~Gi~~iEitl------~t~~----------a~~~i~~l~~~~~~~~iGaGT------------ 62 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITL------RTPG----------ALEAIRALRKEFPEALIGAGT------------ 62 (190)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEEC------CCCH----------HHHHHHHHHHHCCCCEEEECC------------
T ss_conf 779999999999999986998899967------8802----------999999999868980896523------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCC
Q ss_conf 01365446289999999999999962897352466767799999999987788577300336664354301016753102
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR 222 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~ 222 (337)
|.|-+ |+-...+|||+++--..+...-+..-++ ++ ++.+
T Consensus 63 ------V~~~~-------~~~~a~~aGa~FivsP~~~~~v~~~a~~----~~---~~~i--------------------- 101 (190)
T cd00452 63 ------VLTPE-------QADAAIAAGAQFIVSPGLDPEVVKAANR----AG---IPLL--------------------- 101 (190)
T ss_pred ------CCCHH-------HHHHHHHCCCCEEECCCCCHHHHHHHHH----CC---CCEE---------------------
T ss_conf ------47799-------9999998599899737799999999998----29---9665---------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHHHHHHC
Q ss_conf 4467777443157211478898888766408987995531145-89999999624
Q gi|255764463|r 223 DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY-LDVCFRIKEKF 276 (337)
Q Consensus 223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y-LDii~~~k~~~ 276 (337)
.| .... -|+..=.+-|||++.+=||-.. ...++.++.-|
T Consensus 102 ---PG--------v~Tp----sEi~~A~~~G~~~vK~FPa~~~G~~~lkal~~pf 141 (190)
T cd00452 102 ---PG--------VATP----TEIMQALELGADIVKLFPAEAVGPAYIKALKGPF 141 (190)
T ss_pred ---CC--------CCCH----HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf ---78--------7999----9999999879998998955114999999985548
No 111
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=70.06 E-value=10 Score=19.35 Aligned_cols=73 Identities=27% Similarity=0.385 Sum_probs=47.2
Q ss_pred CCCCEEECCCCCCCCCCCHHH----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 898811048887863288999----9999999998889367633025633455445421576537999999999730144
Q gi|255764463|r 49 GEKTVESINSMPDVMRMSIDV----AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124 (337)
Q Consensus 49 g~~~k~~I~SMPGv~R~Sid~----L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl 124 (337)
+...++.-=.|||---| +|. |-+=++--.++||+++-.+ ++++ +- |+ +..+.+++.-|||
T Consensus 94 ~~~~~~~~F~~PGkVLH-iDGD~~YL~~Cl~~Ykql~i~a~G~~--i~E~-eq--------P~----~i~~Ll~~~~PDI 157 (287)
T pfam05582 94 GYNENELYFGRPGRVLH-LDGDPEYLDKCLKVYKQLGLPAVGVH--ISEK-EQ--------PE----KIESLLEKYRPDI 157 (287)
T ss_pred CCCCCCCCCCCCCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEEE--ECCH-HC--------HH----HHHHHHHHHCCCE
T ss_conf 33454322489862887-54989999999999997198458998--3601-25--------29----9999998728998
Q ss_pred EEEECCCCCHHHCCCCCCCCCCC
Q ss_conf 79861332710011431001365
Q gi|255764463|r 125 GIITDVALDPFTIHGHDGILCDG 147 (337)
Q Consensus 125 ~vi~DVcLc~YT~hGHcGi~~~g 147 (337)
+|+| ||||++++.
T Consensus 158 lViT----------GHD~~~K~~ 170 (287)
T pfam05582 158 LVIT----------GHDAYLKNK 170 (287)
T ss_pred EEEE----------CCHHHHCCC
T ss_conf 9995----------845763377
No 112
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=69.98 E-value=4.8 Score=21.55 Aligned_cols=245 Identities=16% Similarity=0.110 Sum_probs=118.9
Q ss_pred CCEEEECCCCCEEECCC----CCCCCCCCHH-------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-------CCC
Q ss_conf 11666758988110488----8786328899-------99999999998889367633025633455445-------421
Q gi|255764463|r 42 LPIFLTSGEKTVESINS----MPDVMRMSID-------VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG-------SHI 103 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~S----MPGv~R~Sid-------~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G-------seA 103 (337)
+|+|+.||--.. +.+- +|.- -||-- -+.+.-.+-++.|-..++-+-. .-++.| .++
T Consensus 8 ~~vliLDGG~~t-ELe~rG~~l~~p-lWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TY----qa~~~~~~e~~~~~~~ 81 (300)
T COG2040 8 LSVLILDGGLAT-ELERRGCDLSDP-LWSALALVDEPEIVRNVHADFLRAGADIITTATY----QATPEGFAERVSEDEA 81 (300)
T ss_pred CCEEEECCCHHH-HHHHCCCCCCCH-HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEHHH----HCCHHHHHHHCCHHHH
T ss_conf 877985371467-888547888845-6654330457799999999999715727850103----1498889874356679
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-H
Q ss_conf 576537999999999730144798613327100114310013654462899999999999999628973524667677-9
Q gi|255764463|r 104 IDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDG-R 182 (337)
Q Consensus 104 ~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDG-r 182 (337)
-.-...--+-.|..|+.+.+-..-.--|+-||-.|=-|-.--+-...-|.-..---.+-..+.+||+|+++---+-+= -
T Consensus 82 ~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~E 161 (300)
T COG2040 82 KQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITE 161 (300)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 99999889999999998546553213003614530470531766766788999889989999867986787515688389
Q ss_pred HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEC
Q ss_conf 999999998778857730033666435430101675310244677774431572114788988887664--089879955
Q gi|255764463|r 183 VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ--ESADMLLVK 260 (337)
Q Consensus 183 V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~--EGAD~lMVK 260 (337)
-.+|.+.+.+- ..-.=.||+.+ | ++.+.- .+.+.|+..-++ .++=.+||-
T Consensus 162 a~Aiv~l~~~~--s~p~wISfT~~---------------------d--~~~lr~---Gt~l~eaa~~~~~~~~iaa~gvN 213 (300)
T COG2040 162 AEAIVQLVQEF--SKPAWISFTLN---------------------D--DTRLRD---GTPLSEAAAILAGLPNIAALGVN 213 (300)
T ss_pred HHHHHHHHHHH--CCCEEEEEEEC---------------------C--CCCCCC---CCCHHHHHHHHHCCCCHHHHCCC
T ss_conf 99999999984--87669999967---------------------9--972678---75299999998157233631204
Q ss_pred CCHH--HHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCEEE
Q ss_conf 3114--58999999-962499899993461899999999888978---899999999999772699998
Q gi|255764463|r 261 PGLP--YLDVCFRI-KEKFGLPTFAYQVSGEYAMIKAASLQGWIN---KNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 261 Pa~~--yLDii~~~-k~~~~~P~~aYqVSGEYami~~a~~~g~~d---~~~~~~E~l~~~kRAGAd~Ii 323 (337)
=.-| ...+|+.+ +-.+++|+.+|-=|||+-= . ..+.|-- ..+..-..-...+-+||++|=
T Consensus 214 C~~p~~~~a~i~~l~~~~~~~piivYPNSGe~~d--~-~~k~w~~p~~~~~s~~~~a~~w~~~GA~iiG 279 (300)
T COG2040 214 CCHPDHIPAAIEELSKLLTGKPIIVYPNSGEQYD--P-AGKTWHGPALSADSYSTLAKSWVEAGARIIG 279 (300)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC--C-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 6786767999999985378996698179623258--7-7786889877603889999988714562452
No 113
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=69.06 E-value=10 Score=19.37 Aligned_cols=93 Identities=26% Similarity=0.383 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
+.+.++++.+++.++|=+- .. +||-. ..| -+|++.+++.- +-+-+
T Consensus 62 ~~~~m~~~a~~l~~~~~ni--~v-KIP~t-----------~~g--l~ai~~L~~~g--i~~n~----------------- 106 (211)
T cd00956 62 DAEGMVAEARKLASLGGNV--VV-KIPVT-----------EDG--LKAIKKLSEEG--IKTNV----------------- 106 (211)
T ss_pred CHHHHHHHHHHHHHHCCCE--EE-EECCC-----------HHH--HHHHHHHHHCC--CCEEE-----------------
T ss_conf 7999999999999738957--99-92685-----------659--99999999859--97677-----------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEECC-----CCC-CC--HHHHHHHHHHHCCCCCCCEEC
Q ss_conf 6544628999999999999996289735246-----676-77--999999999877885773003
Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAPS-----EMM-DG--RVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS-----dMM-DG--rV~aIR~~Ld~~g~~~~~Ims 202 (337)
|.---..||+.-|+|||++|+|= |.- || .|..+++.++.+|+. +-||.
T Consensus 107 --------Tav~s~~Qa~~Aa~aga~yvspf~GRi~d~G~d~~~~i~~~~~~~~~~~~~-tkiL~ 162 (211)
T cd00956 107 --------TAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD-TKILA 162 (211)
T ss_pred --------EEECCHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCCC-EEEEE
T ss_conf --------750689999999987997886303407545898599999999999982998-26885
No 114
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=68.92 E-value=2.6 Score=23.33 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=30.9
Q ss_pred HCCCCEEEECCCCC----EEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 73311666758988----11048887863288999999999999
Q gi|255764463|r 39 DLILPIFLTSGEKT----VESINSMPDVMRMSIDVAVEKIKQVA 78 (337)
Q Consensus 39 dLI~PiFV~eg~~~----k~~I~SMPGv~R~Sid~L~~eie~~~ 78 (337)
.--.|+|+.| ... ..++..|||||-|+||.|-..+++=+
T Consensus 282 e~~~pl~~~D-IAvPRdvd~~v~~L~~vfLy~vDDL~~~~~~N~ 324 (436)
T TIGR01035 282 EAARPLFIVD-IAVPRDVDPEVAKLEGVFLYDVDDLKEVVEENL 324 (436)
T ss_pred CCCCCEEEEE-CCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 0158869997-588998637862229669973031389999999
No 115
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=68.29 E-value=11 Score=19.11 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHHHHHHHHCCCCEE----EC-----CCCC----CCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 999999996289735----24-----6676----77999999999877885773003
Q gi|255764463|r 159 SHAAVIQADAGADII----AP-----SEMM----DGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 159 ~k~Al~~A~AGaDiv----AP-----SdMM----DGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
.++|+.+.++|||.| .| ...+ -.|..||-+..+...-.+++|.+
T Consensus 205 ~~~a~~Li~aGAD~VkVGiGpGsiCTTr~v~GvGvPq~tAi~d~~~~a~~~~v~IIA 261 (404)
T PRK06843 205 KEAALDLINVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA 261 (404)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999999998198999956547877256654586874899999999996057997883
No 116
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=68.00 E-value=5.4 Score=21.15 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCHHHCC
Q ss_conf 799999999973014479861332710011
Q gi|255764463|r 109 LINEGICAIKKNIPNIGIITDVALDPFTIH 138 (337)
Q Consensus 109 lv~rAIr~IK~~fpdl~vi~DVcLc~YT~h 138 (337)
-+.++|+.||+..||++|+.|-|--+|+..
T Consensus 177 ~I~~~i~~vk~~~pd~ivfVDNCYGEFvE~ 206 (405)
T pfam06838 177 EIKEMIKFVKEINPNVIVFVDNCYGEFVET 206 (405)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 999999999976899399997886020267
No 117
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=67.75 E-value=11 Score=19.04 Aligned_cols=102 Identities=24% Similarity=0.376 Sum_probs=73.8
Q ss_pred ECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 75898811048887863288999999999999888936763302563345544542157653799999999973014479
Q gi|255764463|r 47 TSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI 126 (337)
Q Consensus 47 ~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v 126 (337)
.=|-+.+..|.||-...-..++.-++++.++.+.|.--|=+= +| +.++. +|++.||+..| +=+
T Consensus 21 ~IGG~~PI~VQSMt~t~T~Dv~at~~Qi~~L~~aGceiVRva--vp-~~~~a-------------~al~~I~~~~~-iPl 83 (367)
T PRK00366 21 PIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVA--VP-DMEAA-------------AALPEIKKQLP-VPL 83 (367)
T ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHCC-CCE
T ss_conf 047999502575689974438999999999998499989984--59-99999-------------96999998478-970
Q ss_pred EECCCCCHHH-----CCCCCCCC-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8613327100-----11431001-365446289999999999999
Q gi|255764463|r 127 ITDVALDPFT-----IHGHDGIL-CDGEIVNDETIELISHAAVIQ 165 (337)
Q Consensus 127 i~DVcLc~YT-----~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~ 165 (337)
++|+-+++-. ..|-+++= .-|.|-.++-+..+.+.|..+
T Consensus 84 vADIHF~~~lAl~a~~~g~~kiRINPGNig~~e~~~~vv~~ak~~ 128 (367)
T PRK00366 84 VADIHFDYRLALKAAEAGADALRINPGNIGRDERFKEVVEAAKDY 128 (367)
T ss_pred ECCCCCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 312541489999999864111313787568648899999999984
No 118
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.67 E-value=11 Score=19.03 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=25.6
Q ss_pred CCCCHHHCCCCEEEEC--CCCCE---EECC---CCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 7788877331166675--89881---1048---88786328899999999999988893
Q gi|255764463|r 33 HRLSVSDLILPIFLTS--GEKTV---ESIN---SMPDVMRMSIDVAVEKIKQVADLGIP 83 (337)
Q Consensus 33 t~Ls~~dLI~PiFV~e--g~~~k---~~I~---SMPGv~R~Sid~L~~eie~~~~lGI~ 83 (337)
..+....|=.||+-.. ..... ..+. .+.-+.||..+..++.++...+.++-
T Consensus 29 ~~~~~~~~~iPIiaAnMDTV~~~~mA~~l~k~GglgvLHR~~~e~~~~~~~~~~~~~~~ 87 (326)
T PRK05458 29 VTLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDMHERGLI 87 (326)
T ss_pred EEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCE
T ss_conf 98568522788885898974888999999978986899855889999999852323727
No 119
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=67.63 E-value=11 Score=19.02 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301-44798613327100114310
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337)
....+.+.+.++.+.+.|+..+.+++...+.. +-++++ -.+.++...+..+ .+-|++-| |+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~-----~Ls~~E---r~~l~~~~~~~~~~~~pvi~gv--------~~-- 75 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEE---RKEVIEAVVEAVAGRVPVIAGV--------GA-- 75 (281)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCHH-----HCCHHH---HHHHHHHHHHHCCCCCEEEEEC--------CC--
T ss_conf 94999999999999976999899685452431-----389999---9999999999808985099957--------87--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--E-CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf 0136544628999999999999996289735--2-4667---67799999999987788577300336664354301016
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADII--A-PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR 216 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--A-PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR 216 (337)
.+...-.++|...+++|||.+ . |+-. -|+-+...++..+. .+.+||=|-.
T Consensus 76 ----------~s~~~~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~---~~~pi~iYn~----------- 131 (281)
T cd00408 76 ----------NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA---SDLPVILYNI----------- 131 (281)
T ss_pred ----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEEC-----------
T ss_conf ----------8899999999999975999899879977789999999999999855---5997799727-----------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 7531024467777443157211478898888766408987995531145899999996249989999346189
Q gi|255764463|r 217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337)
Q Consensus 217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337)
|.. ..+.+++ +-+++. .+--.++.+|=+-+-+.-+.++.+.++-.+..+.-.+++
T Consensus 132 ------P~~----~g~~l~~----~~l~~L----~~~~nv~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~ 186 (281)
T cd00408 132 ------PGR----TGVDLSP----ETIARL----AEHPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDDL 186 (281)
T ss_pred ------CCC----CCCCCCH----HHHHHH----HCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHHH
T ss_conf ------753----1677689----999998----489998999848899999999999759970562696688
No 120
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=67.59 E-value=11 Score=19.01 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHCCCCEEE---ECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHH--
Q ss_conf 3157-21147889888876640898799---553114589999999624-9989999346189999999988897889--
Q gi|255764463|r 232 YYLD-PANVQEAIREASIDIQESADMLL---VKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKN-- 304 (337)
Q Consensus 232 YQmd-~~n~~eA~~e~~~D~~EGAD~lM---VKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~-- 304 (337)
|... +.|...+++..... . --|.|+ +=|++-=||++.++|+.. .+||.+-----....--.|.+.|.+++=
T Consensus 23 ~~v~~f~~A~~~l~~l~~~-p-~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIvM~A~~dl~~Av~a~~~GAfEYLpK 100 (471)
T TIGR01818 23 IEVRTFDNAASVLRALARE-P-QPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIVMTAHSDLDSAVAAYQRGAFEYLPK 100 (471)
T ss_pred CEEEEHHHHHHHHHHHHCC-C-CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCHHCCCC
T ss_conf 5453113189999998447-9-9987986122688248999999985089997798713067899999973583021769
Q ss_pred -HHHHHHHHHHHHHCCC
Q ss_conf -9999999999772699
Q gi|255764463|r 305 -DAMMESLLAFKRAGCD 320 (337)
Q Consensus 305 -~~~~E~l~~~kRAGAd 320 (337)
==+-|.+.-.+||=.+
T Consensus 101 PFD~de~v~lv~RA~~~ 117 (471)
T TIGR01818 101 PFDLDEAVTLVERALAH 117 (471)
T ss_pred CCCHHHHHHHHHHHHCC
T ss_conf 87668899999986103
No 121
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=67.52 E-value=3.7 Score=22.25 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE---------CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH
Q ss_conf 7211478898888766408987995---------5311458999999962499899993461899999999888978899
Q gi|255764463|r 235 DPANVQEAIREASIDIQESADMLLV---------KPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKND 305 (337)
Q Consensus 235 d~~n~~eA~~e~~~D~~EGAD~lMV---------KPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~ 305 (337)
|.++..|++... +-|+|++=- ++..|-+++++++++ ..+|+.| .|-++...
T Consensus 98 D~st~eea~~A~----~~G~D~I~TTL~GYT~~t~~~~pD~~ll~~l~~-~~~pvIa---------------EGri~tPe 157 (192)
T pfam04131 98 DCSTFEEGLNAH----KLGVDIVGTTLSGYTGGSNPAEPDFQLVKTLSE-AGCFVIA---------------EGRYNTPE 157 (192)
T ss_pred ECCCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE---------------ECCCCCHH
T ss_conf 749999999999----859999982325578999999997899999986-8993998---------------57989999
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q ss_conf 9999999997726999982
Q gi|255764463|r 306 AMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 306 ~~~E~l~~~kRAGAd~Iit 324 (337)
.+.+.+ .+||+.++-
T Consensus 158 ~a~~a~----~~GA~aVVV 172 (192)
T pfam04131 158 LAKKAI----EIGADAVTV 172 (192)
T ss_pred HHHHHH----HCCCCEEEE
T ss_conf 999999----839989998
No 122
>PRK08904 consensus
Probab=67.32 E-value=8.3 Score=19.93 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
-+.+..++.++-+.+-||+.+=+-- .++ -..++|+.++++||++.|=+
T Consensus 19 ~~~~~a~~~a~al~~~Gi~~iEiTl------rtp----------~a~~~i~~l~~~~p~~~vGa---------------- 66 (207)
T PRK08904 19 DDLSTAVDLSRALVEGGIPTLEITL------RTP----------VGLDAIRLIAKEVPNAIVGA---------------- 66 (207)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC------CCC----------HHHHHHHHHHHHCCCCEEEE----------------
T ss_conf 9999999999999987998899957------991----------39999999998689876855----------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 36544628999999999999996289735-24667677999999999877885773003366643543010167531024
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRD 223 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p 223 (337)
|-|.+- +|+-...+|||+++ +|. +|-.|.. .+ .++| ++.+ |
T Consensus 67 --GTVl~~-------e~~~~a~~aGA~FiVSP~--~~~~v~~--~a-~~~~---i~~i---------------------P 108 (207)
T PRK08904 67 --GTVTNP-------EQLKAVEDAGAVFAISPG--LHESLAK--AG-HNSG---IPLI---------------------P 108 (207)
T ss_pred --EECCCH-------HHHHHHHHCCCCEEECCC--CCHHHHH--HH-HHCC---CCEE---------------------C
T ss_conf --313689-------999999984999998489--9899999--99-9839---9765---------------------7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC
Q ss_conf 467777443157211478898888766408987995531145--89999999624
Q gi|255764463|r 224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF 276 (337)
Q Consensus 224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~ 276 (337)
| ..... |+..-.+-|+|++=+=||-.+ ..-|+.++.-|
T Consensus 109 ---G--------v~Tps----Ei~~A~~~G~~~vK~FPA~~~GG~~~lkal~~pf 148 (207)
T PRK08904 109 ---G--------VATPG----EIQLALEHGIDTLKLFPAEVVGGKAMLKALYGPY 148 (207)
T ss_pred ---C--------CCCHH----HHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCC
T ss_conf ---8--------69999----9999998799989977622208899999874659
No 123
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.28 E-value=5.9 Score=20.93 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCCCCCCCC----HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8585631289----889998634778887733116667589881104888-78632889999999999998889367633
Q gi|255764463|r 14 HRRMRRNRKS----NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSM-PDVMRMSIDVAVEKIKQVADLGIPAIAIF 88 (337)
Q Consensus 14 ~~R~RRlR~~----~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SM-PGv~R~Sid~L~~eie~~~~lGI~av~LF 88 (337)
..|+-||-++ ..+|++..||.+....+-...| -+-|..|- |.+.+.+++.+.+.|+-+.+|||+.|.|.
T Consensus 46 d~~~~rL~w~~~~~~~ir~~~~~~gi~i~s~cls~~------~~~Pl~S~D~~~R~~~~e~~~kaI~lA~~LGi~~I~la 119 (283)
T PRK13209 46 DERLARLDWSREQRLALVNALVETGFRVNSMCLSAH------RRFPLGSEDDAVRAQGLEIMRKAIQLAQDLGIRVIQLA 119 (283)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 310035899999999999999981998603305455------57999997999999999999999999998099989968
Q ss_pred EC
Q ss_conf 02
Q gi|255764463|r 89 PN 90 (337)
Q Consensus 89 p~ 90 (337)
|+
T Consensus 120 g~ 121 (283)
T PRK13209 120 GY 121 (283)
T ss_pred CC
T ss_conf 87
No 124
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=67.23 E-value=11 Score=18.97 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=43.0
Q ss_pred HHHHHCCCCEEEECCCHH----------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 876640898799553114----------5899999996249989999346189999999988897889999999999977
Q gi|255764463|r 247 SIDIQESADMLLVKPGLP----------YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKR 316 (337)
Q Consensus 247 ~~D~~EGAD~lMVKPa~~----------yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kR 316 (337)
..-+.+|||++-|-|-.| -+|.++.++..+.+|++|- |-++.+. +..+++
T Consensus 252 ~~A~~~gaDYig~Gpvf~T~TK~~~~p~Gl~~l~~~~~~~~iPvvAI---------------GGI~~~N-----~~~v~~ 311 (345)
T PRK02615 252 AKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYARKEANIPWFAI---------------GGIDKSN-----ISEVLQ 311 (345)
T ss_pred HHHHHCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCCHHH-----HHHHHH
T ss_conf 99986399979988774258888888789999999998379999999---------------9969999-----999998
Q ss_pred HCCCEEEE
Q ss_conf 26999982
Q gi|255764463|r 317 AGCDGIFT 324 (337)
Q Consensus 317 AGAd~Iit 324 (337)
+||+.|--
T Consensus 312 aGa~gvAV 319 (345)
T PRK02615 312 AGADRVAV 319 (345)
T ss_pred CCCCEEEE
T ss_conf 59999998
No 125
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=67.15 E-value=11 Score=18.96 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC--CCC-CC-CC-----CC--------HHHHHHHHHHHHHHHH
Q ss_conf 7653799999999973014-479861332710011431--001-36-54-----46--------2899999999999999
Q gi|255764463|r 105 DPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD--GIL-CD-GE-----IV--------NDETIELISHAAVIQA 166 (337)
Q Consensus 105 n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc--Gi~-~~-g~-----Id--------ND~Tl~~L~k~Al~~A 166 (337)
+.-.+|.+||+.+|++.++ .-+| --|=.|+|---+. |-- ++ .+ .. -|.-.+.+.+-+..|.
T Consensus 109 ~~l~~v~eai~~~r~~L~~~~pLI-GF~G~PwTLasYmieG~~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi 187 (335)
T cd00717 109 EELSYVYEAIKLTRKELPGEVPLI-GFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQI 187 (335)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 565699999999999738888768-8638769999999838998557999877613889999999999999999999999
Q ss_pred HCCCCEEECCCCCCC
Q ss_conf 628973524667677
Q gi|255764463|r 167 DAGADIIAPSEMMDG 181 (337)
Q Consensus 167 ~AGaDivAPSdMMDG 181 (337)
+||||+|.=-|--=|
T Consensus 188 ~aGAd~iqIFDSwag 202 (335)
T cd00717 188 EAGAQAVQIFDSWAG 202 (335)
T ss_pred HHCCCEEEECCCCCC
T ss_conf 819987885075202
No 126
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=67.14 E-value=11 Score=19.18 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
|=+.--+.+...+.++.+.+.||+.+=+= ..++ ---++|+.++++||++.|=+
T Consensus 12 pV~r~~~~~~a~~~~~al~~~Gi~~iEiT------l~t~----------~a~~~I~~l~~~~p~~~iGa----------- 64 (196)
T pfam01081 12 PVIVIKDKEDALPLAEALAAGGIRVLEVT------LRTP----------CALDAIRLLRKNRPDALVGA----------- 64 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEE------CCCH----------HHHHHHHHHHHHCCCCEEEE-----------
T ss_conf 99977999999999999998799889994------7982----------79999999996499967999-----------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf 3100136544628999999999999996289735-246676779999999998778857730033666435430101675
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA 218 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA 218 (337)
|-|.+- +|+-...+|||+++ +|. +| ..+-+...++|.. .
T Consensus 65 -------GTV~~~-------e~~~~a~~aGA~FivSP~--~~---~~v~~~a~~~~i~---~------------------ 104 (196)
T pfam01081 65 -------GTVLNA-------QQLAEAAEAGAQFVVSPG--LT---ADLLKHAVDVKIP---L------------------ 104 (196)
T ss_pred -------EECCCH-------HHHHHHHHCCCCEEECCC--CH---HHHHHHHHHCCCC---E------------------
T ss_conf -------837689-------999999974999999787--63---9999999973996---6------------------
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCE
Q ss_conf 31024467777443157211478898888766408987995531145--89999999624-9989
Q gi|255764463|r 219 ISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPT 280 (337)
Q Consensus 219 ~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~ 280 (337)
+.| ..... |+..-.+-|+|++=+=||-.+ +.-++.++.-| .+|.
T Consensus 105 ------iPG--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~p~p~~~f 151 (196)
T pfam01081 105 ------IPG--------VSTPS----EIMLGLDLGLTRFKFFPAEASGGVPAIKALAGPFPQVRF 151 (196)
T ss_pred ------ECC--------CCCHH----HHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCCCCCEE
T ss_conf ------378--------59999----999999879998997873101849999998577999869
No 127
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.87 E-value=12 Score=18.92 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=48.0
Q ss_pred EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6667589881104888786328899999999999988893676330256334554-454215765379999999997301
Q gi|255764463|r 44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIP 122 (337)
Q Consensus 44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fp 122 (337)
+|+.-|..+-| |.+.+.+.++.+.++|++ ++|+++=.. .+. .+-...-.+|+ +-++.+|++|
T Consensus 28 ~~~IAGPC~iE-----------s~e~~~~~A~~lk~~g~~--~~r~~~fK~-RTs~~sfrG~G~egL--~~L~~vk~~~- 90 (266)
T PRK13398 28 KIIIAGPCAVE-----------SEEQMVKVAEKLKELGVH--MLRGGAFKP-RTSPYSFQGLGEEGL--KILKEVGDKY- 90 (266)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHHHHHHHHH--HCCCCEECC-CCCCCCCCCCCHHHH--HHHHHHHHHC-
T ss_conf 48997577207-----------999999999999983334--333754158-999855568858899--9999999872-
Q ss_pred CCEEEECCCCCH
Q ss_conf 447986133271
Q gi|255764463|r 123 NIGIITDVALDP 134 (337)
Q Consensus 123 dl~vi~DVcLc~ 134 (337)
++-|+|||.-..
T Consensus 91 glpi~TdVh~~~ 102 (266)
T PRK13398 91 NMPVVTEVMDTR 102 (266)
T ss_pred CCCEEEEECCHH
T ss_conf 995477745837
No 128
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.79 E-value=12 Score=18.91 Aligned_cols=169 Identities=12% Similarity=0.095 Sum_probs=102.6
Q ss_pred CEEECCCCCCCCCCCHH-----HHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---
Q ss_conf 81104888786328899-----9999999999888-93676330256334554454215765379999999997301---
Q gi|255764463|r 52 TVESINSMPDVMRMSID-----VAVEKIKQVADLG-IPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP--- 122 (337)
Q Consensus 52 ~k~~I~SMPGv~R~Sid-----~L~~eie~~~~lG-I~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp--- 122 (337)
..+|+++.|-+|-.+.+ .+.+.++.+++-| |.+|.|= . |+. +++-+.+..+.++.-.-
T Consensus 5 ~~~p~~~~~rLYLITP~~~d~~~~~~~l~~aL~~g~Va~vqlR-----~-k~~-------d~~~~~~~a~~L~~lc~~~g 71 (221)
T PRK06512 5 AMKPIESRCRIVLVAPPIADGAALAKLLRAALSGGDVASVILP-----D-YGL-------DEATFQKQAEKYVPVIQEAG 71 (221)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEE-----C-CCC-------CHHHHHHHHHHHHHHHHHCC
T ss_conf 7899999875899789974667899999999846985599975-----7-999-------99999999999999999829
Q ss_pred CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 44798613327100114310013654462899999999999999628973524667677999999999877885773003
Q gi|255764463|r 123 NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 123 dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
-.+|| ||.. .. -.+.|||-|--. --|.-+...|+.|-.+- |..
T Consensus 72 v~lII-----------------------ND~~-----dl---A~~~gADGVHlG-q~d~~~~~aR~~lg~~~-----IIG 114 (221)
T PRK06512 72 AAALI-----------------------AGDT-----RI---AGRVKADGLHIE-GNAAALAEAIEKHAPKM-----IVG 114 (221)
T ss_pred CCEEE-----------------------CCCH-----HH---HHHCCCCEEEEC-CCCCCHHHHHHHHCCCC-----EEE
T ss_conf 91998-----------------------8979-----99---997099866526-87531999999847886-----786
Q ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC---------HHHHHHHHHHH
Q ss_conf 366643543010167531024467777443157211478898888766408987995531---------14589999999
Q gi|255764463|r 203 YVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG---------LPYLDVCFRIK 273 (337)
Q Consensus 203 YsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa---------~~yLDii~~~k 273 (337)
. .+| .+..+|+.. .++|||+|.+-|= -.-|+.++..+
T Consensus 115 ~--------------------------~~~----~s~~~A~~A----~e~GADYv~fG~~~~~~k~~a~~~~l~~l~~~~ 160 (221)
T PRK06512 115 F--------------------------GNL----RDRHGAMEV----GELQPDYLFFGKLGADNKPEAHPRNLSLAEWWA 160 (221)
T ss_pred E--------------------------ECC----CCHHHHHHH----HHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 4--------------------------057----889999999----973998576578788889988754258999999
Q ss_pred HHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 624998999934618999999998889788999999999997726999982
Q gi|255764463|r 274 EKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 274 ~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
+.+.+|++|. |-++. |....+-++|||+|--
T Consensus 161 ~~~~iP~VAI---------------GGIt~-----~n~~~v~~aGad~vAV 191 (221)
T PRK06512 161 EMIEIPCIVQ---------------AGSDL-----ASIVEVAETGAEFVAL 191 (221)
T ss_pred HCCCCCEEEE---------------CCCCH-----HHHHHHHHHCCCEEEE
T ss_conf 7479998998---------------27899-----9999999819989988
No 129
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=66.64 E-value=12 Score=18.89 Aligned_cols=100 Identities=26% Similarity=0.412 Sum_probs=68.7
Q ss_pred ECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 75898811048887863288999999999999888936763302563345544542157653799999999973014479
Q gi|255764463|r 47 TSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI 126 (337)
Q Consensus 47 ~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v 126 (337)
.=|-+.+..|.||-...-..++.-++++.++.+.|.--|=+= +| +.++. ++++.||+.+| +-+
T Consensus 10 ~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva--vp-~~~~a-------------~al~~I~~~~~-iPl 72 (345)
T pfam04551 10 PIGGDAPISVQSMTNTDTRDVEATVAQIKRLEEAGCDIVRVA--VP-DMEAA-------------EALKEIKKQSP-IPL 72 (345)
T ss_pred EECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHCC-CCC
T ss_conf 267989576675689986208999999999998599989988--79-99999-------------84999998589-971
Q ss_pred EECCCCCHH-----HCCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf 861332710-----01143100136-54462899999999999
Q gi|255764463|r 127 ITDVALDPF-----TIHGHDGILCD-GEIVNDETIELISHAAV 163 (337)
Q Consensus 127 i~DVcLc~Y-----T~hGHcGi~~~-g~IdND~Tl~~L~k~Al 163 (337)
++|+-+++- -.+|-+++=-| |.|-.++-++.+.+.|.
T Consensus 73 VADIHF~~~lAl~a~~~g~~kiRINPGNig~~~~~~~vv~~ak 115 (345)
T pfam04551 73 VADIHFDYRLALEAIEAGVDKIRINPGNIGRREKVKEVVEAAK 115 (345)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4004248999999998622015679977486787899999999
No 130
>pfam01076 Mob_Pre Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation).
Probab=65.98 E-value=12 Score=18.81 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 5379999999997301-44798613327100114310013
Q gi|255764463|r 107 DNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 107 dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
+.+...+++-++++|| +=+|-+-|-+|+-|.|=|++++-
T Consensus 101 ~~~~~~~~~~l~~~~G~~nv~~a~~H~DE~tPH~H~~~vP 140 (196)
T pfam01076 101 KEFFETAFKFFEERYGKENILYAVVHLDEATPHMHMGVVP 140 (196)
T ss_pred HHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEEEEE
T ss_conf 9999999999998658112899998547899833799998
No 131
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=64.51 E-value=13 Score=18.62 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=94.4
Q ss_pred ECCCCCCCCCCC------HHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 048887863288------9999999999998889367633--02563345544542157653799999999973014479
Q gi|255764463|r 55 SINSMPDVMRMS------IDVAVEKIKQVADLGIPAIAIF--PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGI 126 (337)
Q Consensus 55 ~I~SMPGv~R~S------id~L~~eie~~~~lGI~av~LF--p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~v 126 (337)
..+.+||-.+|. ++..+++++.+.+.|+-+|++= +-+|-. |+ -+-|. -..+-+.++++|..+. +-
T Consensus 10 HL~pLPGsP~~~~~~~~iie~A~~ea~~l~~~GvDgvivEN~~D~Py~-~~-~~~et---vaamt~i~~~v~~~~~-iP- 82 (254)
T pfam03437 10 HLLPLPGSPGYKANLDAVIDKAVSDAMALEEGGFDAVILENYGDAPYL-KT-VGPET---VAAMTVIAGEVKSDVS-IP- 82 (254)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CC-CCHHH---HHHHHHHHHHHHHHCC-CC-
T ss_conf 379999898889999999999999999999779988998068997774-67-76698---9999999999987448-87-
Q ss_pred EECCCCCHHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE----------CCCCCCCHHHHHHHHHHHCC
Q ss_conf 86133271001143100--1365446289999999999999962897352----------46676779999999998778
Q gi|255764463|r 127 ITDVALDPFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIA----------PSEMMDGRVQEIRKKLDSHG 194 (337)
Q Consensus 127 i~DVcLc~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA----------PSdMMDGrV~aIR~~Ld~~g 194 (337)
||| +.++ +.+++.+ -+.+|||+|= +.+.++|+-+.+-+.-..-+
T Consensus 83 --------------~GvnvL~nd---~~aalai-------A~a~ga~FIRv~~~~g~~~~d~G~~~~~a~~~~r~R~~l~ 138 (254)
T pfam03437 83 --------------LGINVLRND---AVAALAI-------AYAVGADFIRVNVLTGVAASDQGILEGNAGELARYRKLLP 138 (254)
T ss_pred --------------EEEEEECCC---CHHHHHH-------HHHHCCCEEEECCEECEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf --------------367776178---5899999-------9982997698713765333577531553899999999719
Q ss_pred CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC----HHHHHHHH
Q ss_conf 85773003366643543010167531024467777443157211478898888766408987995531----14589999
Q gi|255764463|r 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG----LPYLDVCF 270 (337)
Q Consensus 195 ~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa----~~yLDii~ 270 (337)
- ++.|+.-- -.|.++.+..+...|..++.. ..-+||-|.|-=. -+-++-|.
T Consensus 139 a-~v~i~aDV----------------------~~Kh~~~l~~~~~~~~~~~~~--~~~~aDaiivTG~~TG~~~~~~~l~ 193 (254)
T pfam03437 139 S-RIKILADV----------------------HVKHAVHLGNRDIESAVLDTI--ERGLADAVILSGKTTGGEVDLEELK 193 (254)
T ss_pred C-CCEEEEEE----------------------CCCCCCCCCCCCHHHHHHHHH--HHCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 9-95899755----------------------001254579999899999999--8268989997873027999999999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9996249989999
Q gi|255764463|r 271 RIKEKFGLPTFAY 283 (337)
Q Consensus 271 ~~k~~~~~P~~aY 283 (337)
++|+...+|+.+=
T Consensus 194 ~vk~~~~~PvlvG 206 (254)
T pfam03437 194 LAKETVPVPVLVG 206 (254)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9996269988995
No 132
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=64.48 E-value=13 Score=18.62 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEE--EECCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHH----------CCCEEEECCCCC
Q ss_conf 999999999999888936763--3025633455445-421576537999999999730----------144798613327
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAI--FPNIPMDLRNNTG-SHIIDPDNLINEGICAIKKNI----------PNIGIITDVALD 133 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~L--Fp~I~~~~Kd~~G-seA~n~dglv~rAIr~IK~~f----------pdl~vi~DVcLc 133 (337)
.|.+.+.=++-++.|-.-+.. |...+..+++. | ++. .-..+..++++.-|+.. ++..|..++ -
T Consensus 45 Pd~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~-g~~~~-~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~VaGsl--g 120 (308)
T PRK09485 45 PELIYQVHLDYFRAGADIAITASYQATFQGFAAR-GLSEA-EAEALIRRSVELAKEARDDVWAEKPQRPYLLVAGSV--G 120 (308)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHC-CCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC--C
T ss_conf 2999999999998087878724550378989874-99999-999999999999999999975413688870698415--7
Q ss_pred HHHCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCE-ECHHHHHHH
Q ss_conf 1001143100--136544628999999999999996289735246676779-999999998778857730-033666435
Q gi|255764463|r 134 PFTIHGHDGI--LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGR-VQEIRKKLDSHGHINVGI-MPYVAKFNS 209 (337)
Q Consensus 134 ~YT~hGHcGi--~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~I-msYsaKfaS 209 (337)
||...=.+|- ..+-.+.-++-.+....|.-.+.++|+|++.-=-|-|-. +.++.+++.+ +.+.++ +|.+.+-.
T Consensus 121 P~g~~l~~g~ey~g~~~~~~~~~~~~~~~qi~~l~~~gvD~il~ET~~~~~E~~~~~~~~~~--~~~~pv~~s~t~~~~- 197 (308)
T PRK09485 121 PYGAYLADGSEYRGDYGLSVEELQDFHRPRIEALLDAGADLLALETIPNLDEAEALVELLKE--FPQVPAWLSFTLRDG- 197 (308)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHH--CCCCCEEEEEEECCC-
T ss_conf 54442378866678789999999999999999997278988999603999999999999985--579968999997689-
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC--CCHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 430101675310244677774431572114788988887664089879955--311458999999962499899993461
Q gi|255764463|r 210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK--PGLPYLDVCFRIKEKFGLPTFAYQVSG 287 (337)
Q Consensus 210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK--Pa~~yLDii~~~k~~~~~P~~aYqVSG 287 (337)
| .-.+-....+++..+.. ....|.+++- .--..+..++.+++.+..|+.+|-=+|
T Consensus 198 -----------------~----~l~~G~~l~~a~~~~~~--~~~v~~vGiNC~~p~~~~~~l~~l~~~~~~pi~~yPNaG 254 (308)
T PRK09485 198 -----------------T----HISDGTPLAEAAAALAA--YPQVVAVGINCTAPELVTPAIATLKAVTDKPLIVYPNSG 254 (308)
T ss_pred -----------------C----CCCCCCCHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf -----------------8----41899919999999973--788536863178999999999999970697799993899
Q ss_pred HHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHCCCEE
Q ss_conf 89999999988897---889999999999977269999
Q gi|255764463|r 288 EYAMIKAASLQGWI---NKNDAMMESLLAFKRAGCDGI 322 (337)
Q Consensus 288 EYami~~a~~~g~~---d~~~~~~E~l~~~kRAGAd~I 322 (337)
+-- ....++|. .......|....+...||++|
T Consensus 255 ~~~---d~~~~~~~~~~~~~~~~~~~~~~w~~~Ga~ii 289 (308)
T PRK09485 255 EVY---DAVTKTWHGPREFSATLAEQAPEWLAAGARLI 289 (308)
T ss_pred CCC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 988---97555667898899999999999998799199
No 133
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=64.43 E-value=6.3 Score=20.72 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=46.1
Q ss_pred ECCCCC-EEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 758988-1104888786328899999999999----98889367633025633455445421576537999999999730
Q gi|255764463|r 47 TSGEKT-VESINSMPDVMRMSIDVAVEKIKQV----ADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337)
Q Consensus 47 ~eg~~~-k~~I~SMPGv~R~Sid~L~~eie~~----~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337)
+++... ....=.|||---| +|.=...++.| .++|++.+=+. + .+++=+. +....|+.-=
T Consensus 99 t~~~~~~~~~~F~~PGrVLH-~DGD~~YL~~C~~~Y~~~gv~V~G~~-~--~E~emPe------------~v~~L~~~~~ 162 (292)
T TIGR02855 99 TGGYKNVEQLYFGMPGRVLH-IDGDPEYLRKCLKLYKKLGVPVVGIH-C--KEKEMPE------------KVLDLIEEVR 162 (292)
T ss_pred HHHHCCHHHHHCCCCCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEEE-E--EECCCCH------------HHHHHHHHHC
T ss_conf 32210123332248864774-22888899999998866197279999-8--4121808------------8999997309
Q ss_pred CCCEEEECCCCCHHHCCCCCCCCCCCCCCHH
Q ss_conf 1447986133271001143100136544628
Q gi|255764463|r 122 PNIGIITDVALDPFTIHGHDGILCDGEIVND 152 (337)
Q Consensus 122 pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND 152 (337)
|||+||| |||++.++..--+|
T Consensus 163 PDIlViT----------GHDa~~K~~~~~~D 183 (292)
T TIGR02855 163 PDILVIT----------GHDAYSKNKGNYGD 183 (292)
T ss_pred CCEEEEE----------CCCCEEECCCCHHH
T ss_conf 9789994----------66630216787113
No 134
>PRK08041 consensus
Probab=64.42 E-value=0.63 Score=27.48 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 786328899999----99999998889367633025633455445---42157653799999999973014479861332
Q gi|255764463|r 60 PDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTG---SHIIDPDNLINEGICAIKKNIPNIGIITDVAL 132 (337)
Q Consensus 60 PGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~G---seA~n~dglv~rAIr~IK~~fpdl~vi~DVcL 132 (337)
=|+.|--.|... +....+++.|.-.=-+.|+.....+.+.- .|...+ ......+.++|-.|+..+.+|----
T Consensus 168 ~gIsRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvpv~~~~~~~~~~~~~De~~r~-~tt~e~La~L~P~f~~~GtvTagns 246 (391)
T PRK08041 168 YGISRELQDAYALSSQQKARAAIDAGRFKDEIVPVVTQSNGQTLVVDTDEQPRT-DASAEGLARLNPSFDSLGSVTAGNA 246 (391)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCEEEECCCCCCCC-CCCHHHHHHCCCCCCCCCCEECCCC
T ss_conf 598999999999999999999987599753410478605897046446566478-9997677326877588997767877
Q ss_pred CHHHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECHHHHHH
Q ss_conf 710011431001-3654462899999999999999628973524667677999999999877885--773003366643
Q gi|255764463|r 133 DPFTIHGHDGIL-CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPYVAKFN 208 (337)
Q Consensus 133 c~YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsYsaKfa 208 (337)
|+- ++|=+.++ ...+.-....++.++++ +.++.+|+| |+.|--|-|.++|++|+.+|.+ |+-+.---==||
T Consensus 247 s~~-sDGAAavll~s~~~a~~~gl~p~a~i-~~~~~~g~d---P~~m~~~pv~A~~k~L~~agl~~~Did~~EinEAFA 320 (391)
T PRK08041 247 SSI-NDGAAAVMMMSEAKARALNLPVLARI-RAFASVGVD---PALMGIAPVYATRRCLERVGWQLADVDLIEANEAFA 320 (391)
T ss_pred CCC-CCCHHHHHHCCHHHHHHCCCCCEEEE-EEEEEEECC---HHHHHHCHHHHHHHHHHHCCCCHHHCCEEEEEHHHH
T ss_conf 864-55247777538999997799833999-964366518---889603699999999998599854486788604779
No 135
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=64.25 E-value=5.4 Score=21.17 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEC
Q ss_conf 999999999877885773003
Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~~~Ims 202 (337)
-+..+|+.||++||.+|.|+.
T Consensus 271 li~~vR~~LD~aG~~~vKIva 291 (355)
T PRK07188 271 LIFALRKALDENGGKHVKIIV 291 (355)
T ss_pred HHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999999767998717999
No 136
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=63.61 E-value=13 Score=18.51 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCC
Q ss_conf 2889999999999998-8893676330256334554454215765379999999997301-4479861332710011431
Q gi|255764463|r 64 RMSIDVAVEKIKQVAD-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 64 R~Sid~L~~eie~~~~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHc 141 (337)
....+.+.+.++.+++ .|++++.+++...+... -...+. .+.++...+..+ .+-||+-|. |
T Consensus 17 ~iD~~~~~~~i~~li~~~Gv~gi~v~GstGE~~~-----Ls~~Er---~~l~~~~~~~~~~r~pvi~gv~--------~- 79 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFL-----LSVEER---KQIAEIVAEAAKGKVTLIAHVG--------S- 79 (288)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-----CCHHHH---HHHHHHHHHHCCCCCEEEECCC--------C-
T ss_conf 9799999999999998779989997935425213-----899999---9999999997289860873588--------6-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCC---CCCCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf 001365446289999999999999962897352---466---767799999999987788577300336
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIA---PSE---MMDGRVQEIRKKLDSHGHINVGIMPYV 204 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSd---MMDGrV~aIR~~Ld~~g~~~~~ImsYs 204 (337)
.+.....++|-...++|||.|. |.= .-|+-+..-++..+.. .+.+||-|-
T Consensus 80 -----------~s~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~~~~~~~i~~~~--~~~piiiYn 135 (288)
T cd00954 80 -----------LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA--ASLPMIIYH 135 (288)
T ss_pred -----------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEC
T ss_conf -----------45999999999998649786773799887999799999999999857--799654321
No 137
>PRK06857 consensus
Probab=63.36 E-value=11 Score=18.97 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
|=+.--+.+...+.++-+.+-||+.+=+-- .++. -..+|+.+++++||+.|=+
T Consensus 16 pVir~~~~~~a~~~~~al~~gGi~~iEiTl------rt~~----------a~~~I~~l~~~~p~~~vGa----------- 68 (209)
T PRK06857 16 PVIAIDDAEDILPLAKVLAENGLPVAEITF------RSAA----------AAEAIRLLREAYPDMLIGA----------- 68 (209)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEC------CCCC----------HHHHHHHHHHHCCCCEEEE-----------
T ss_conf 999759999999999999987998899958------9932----------9999999997589948999-----------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf 3100136544628999999999999996289735-246676779999999998778857730033666435430101675
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA 218 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA 218 (337)
|-|.+- +|+-...+|||+++ .|. +|-.|.. ...+++ ++.+
T Consensus 69 -------GTV~~~-------e~~~~a~~aGA~FiVSP~--~~~~v~~---~a~~~~---i~~i----------------- 109 (209)
T PRK06857 69 -------GTVLTP-------EQVDAAKEAGADFIVSPG--FNPNTVK---YCQQLN---IPIV----------------- 109 (209)
T ss_pred -------EECCCH-------HHHHHHHHCCCCEEECCC--CCHHHHH---HHHHCC---CCEE-----------------
T ss_conf -------937679-------999999983999999089--9999999---999749---9654-----------------
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCE
Q ss_conf 31024467777443157211478898888766408987995531145--89999999624-9989
Q gi|255764463|r 219 ISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPT 280 (337)
Q Consensus 219 ~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~ 280 (337)
| | ..... |+..-.+-|+|++=+=||-.. ++-++.++.-| ++|+
T Consensus 110 ----P---G--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~~ 155 (209)
T PRK06857 110 ----P---G--------VNNPS----LVEQALEMGLTTLKFFPAEASGGVNMLKALLAPYPNLQI 155 (209)
T ss_pred ----C---C--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf ----7---8--------79999----999999879998997866212669999998653899809
No 138
>PRK08104 consensus
Probab=63.02 E-value=11 Score=18.99 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
-+.+...+.++-+.+-||+.+=+=- .++. --.+|+.+++++||+.|=+
T Consensus 24 ~~~~~a~~la~al~~gGi~~iEiTl------rt~~----------a~~~I~~l~~~~p~~~vGa---------------- 71 (212)
T PRK08104 24 NKLEHAVPLAKALVAGGVRVLEVTL------RTPC----------ALEAIRAIAKEVPEAIVGA---------------- 71 (212)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC------CCCH----------HHHHHHHHHHHCCCCEEEE----------------
T ss_conf 9999999999999987998899968------8814----------9999999998689856854----------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 36544628999999999999996289735246676779999999998778857730033666435430101675310244
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337)
|-|.|-+ |+-...+|||+++---.+ |-.|... + .++ +++.+
T Consensus 72 --GTV~~~e-------~~~~ai~aGA~FiVSP~~-~~~v~~~--a-~~~---~i~~i----------------------- 112 (212)
T PRK08104 72 --GTVLNPQ-------QLAEVTEAGAQFAISPGL-TEELLKA--A-TEG---TIPLI----------------------- 112 (212)
T ss_pred --EECCCHH-------HHHHHHHCCCCEEECCCC-CHHHHHH--H-HHC---CCCEE-----------------------
T ss_conf --2026799-------999999859999984899-9999999--9-982---99765-----------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHCC-CCE
Q ss_conf 67777443157211478898888766408987995531145--899999996249-989
Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKFG-LPT 280 (337)
Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~~-~P~ 280 (337)
.| ..... |+..-.+-|+|++=+=||-.+ ++-|+.++.-|. +|.
T Consensus 113 -PG--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~f 158 (212)
T PRK08104 113 -PG--------ISTVS----ELMLGMDYGLTEFKFFPAEANGGVKALQAISGPFSQIRF 158 (212)
T ss_pred -CC--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf -67--------69999----999999879997997876213749999998555899818
No 139
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.83 E-value=10 Score=19.35 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf 63288999999999999888936763302563345544542157653799999999973014479861332710011431
Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337)
+.-.+.+..++.++-+.+-||+.+=+=- .++.+ .++|+.++++||++.|=+
T Consensus 19 lr~~~~~~a~~~~~al~~gGi~~iEiTl------~t~~a----------~~~I~~l~~~~p~~~iGa------------- 69 (210)
T PRK07455 19 IRAPDLELGLQMAEAVAAGGMRLIEITW------NSDQP----------AELISQLREKLPECIIGT------------- 69 (210)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC------CCCCH----------HHHHHHHHHHCCCCEEEE-------------
T ss_conf 9759999999999999987998899968------99889----------999999998789968988-------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf 00136544628999999999999996289735-24667677999999999877885773003366643543010167531
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS 220 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~ 220 (337)
|-|.+- +|+-...+|||+++ .|. +|-.| |+.+ .++| ++.+
T Consensus 70 -----GTV~~~-------e~~~~a~~aGA~FiVSP~--~~~~v--i~~a-~~~~---i~~i------------------- 110 (210)
T PRK07455 70 -----GTLLTL-------EDLEEAIAAGAQFCFTPH--VDLEL--IQAA-VAAD---IPII------------------- 110 (210)
T ss_pred -----EECCCH-------HHHHHHHHCCCCEEECCC--CCHHH--HHHH-HHCC---CCEE-------------------
T ss_conf -----818789-------999999986999998688--88999--9999-9829---9765-------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH--HHHHHHHHHHHC-CCCEE
Q ss_conf 02446777744315721147889888876640898799553114--589999999624-99899
Q gi|255764463|r 221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP--YLDVCFRIKEKF-GLPTF 281 (337)
Q Consensus 221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~--yLDii~~~k~~~-~~P~~ 281 (337)
| | ..... |+..-.+-|||++=+=||-. =.+-|+.++.-| .+|..
T Consensus 111 --P---G--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~GG~~ylkal~~p~p~i~~~ 157 (210)
T PRK07455 111 --P---G--------ALTPT----EIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLI 157 (210)
T ss_pred --C---C--------CCCHH----HHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCCCCCCEE
T ss_conf --8---8--------69999----9999998699847750513206799999986548999388
No 140
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=62.69 E-value=14 Score=18.40 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=79.4
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCC----HHHCCCCEEEEC------CCC-CEEECC---CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 85856312898899986347788----877331166675------898-811048---8878632889999999999998
Q gi|255764463|r 14 HRRMRRNRKSNWIREMVREHRLS----VSDLILPIFLTS------GEK-TVESIN---SMPDVMRMSIDVAVEKIKQVAD 79 (337)
Q Consensus 14 ~~R~RRlR~~~~iR~Lv~Et~Ls----~~dLI~PiFV~e------g~~-~k~~I~---SMPGv~R~Sid~L~~eie~~~~ 79 (337)
|.-++-.=..+.++.|++|-.-. ..==|||-||.. +.+ .+..|- +.|-= ..+.+.-+.|++.+++
T Consensus 17 hT~L~~~aT~~~I~~Lc~eA~~~~~~~aAVCV~P~~V~~a~~~L~~~~~~~V~vatVvgFP~G-~~~~~~k~~E~~~Ai~ 95 (258)
T PRK05283 17 LTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHG-NDDIAIALAETRAAIA 95 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-CCCHHHHHHHHHHHHH
T ss_conf 678998899999999999997436984599989999999999997348998857999367999-9957789999999998
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88936763302563345544542157653799999999973014---479861332710011431001365446289999
Q gi|255764463|r 80 LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN---IGIITDVALDPFTIHGHDGILCDGEIVNDETIE 156 (337)
Q Consensus 80 lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd---l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~ 156 (337)
.|-.-|-+---+. ..|+.. ...+..-|+.+|+..++ +-||-. .+....++-+.
T Consensus 96 ~GAdEIDmVin~~-~~~~g~-------~~~v~~~i~~v~~a~~~~~~LKVIlE----------------T~~L~~~e~I~ 151 (258)
T PRK05283 96 YGADEVDVVFPYR-ALMAGN-------EQVGFELVKACKEACAANVLLKVIIE----------------TGELKDEALIR 151 (258)
T ss_pred CCCCEEEEEEEHH-HHHCCC-------HHHHHHHHHHHHHHCCCCCEEEEEEE----------------ECCCCCHHHHH
T ss_conf 7995665445089-885788-------79999999999998089843899974----------------03478589999
Q ss_pred HHHHHHHHHHHCCCCEEECCCC
Q ss_conf 9999999999628973524667
Q gi|255764463|r 157 LISHAAVIQADAGADIIAPSEM 178 (337)
Q Consensus 157 ~L~k~Al~~A~AGaDivAPSdM 178 (337)
..+++| -+||||+|=-|-=
T Consensus 152 ~As~~a---~~aGADFVKTSTG 170 (258)
T PRK05283 152 KASEIA---IKAGADFIKTSTG 170 (258)
T ss_pred HHHHHH---HHHCCCEEECCCC
T ss_conf 999999---9969798888999
No 141
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=62.07 E-value=7.6 Score=20.19 Aligned_cols=144 Identities=24% Similarity=0.371 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCH-----------HHHHHHH-HHHCCCCCCCEECHHHHHHHHHHCCHHHHH--
Q ss_conf 99999999999996289735246676779-----------9999999-987788577300336664354301016753--
Q gi|255764463|r 154 TIELISHAAVIQADAGADIIAPSEMMDGR-----------VQEIRKK-LDSHGHINVGIMPYVAKFNSSFYGPYRDAI-- 219 (337)
Q Consensus 154 Tl~~L~k~Al~~A~AGaDivAPSdMMDGr-----------V~aIR~~-Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~-- 219 (337)
-...|+++.-.-.+||||++= =|+|||+ +.+||+. -+. .-||=.|= +=-+.|+..|=+|=
T Consensus 10 Df~rLgee~~~v~~AGaD~iH-~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~--P~DVHLMv---~~pd~~~~~Fa~aGA~ 83 (216)
T TIGR01163 10 DFARLGEEVKAVEEAGADLIH-VDVMDGHFVPNLTFGPPVLEALRKYGTKL--PIDVHLMV---ENPDRYIEDFAEAGAD 83 (216)
T ss_pred CHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCHHHHHHHHHHCCCC--CEEEEECC---CCHHHHHHHHHHHCCC
T ss_conf 477799999999966997899-86247971771002778999887407952--12663035---7857778899970899
Q ss_pred ------HCCC---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE---ECCCH-------HHHHHHHHHHH
Q ss_conf ------1024---------46777744315721147889888876640898799---55311-------45899999996
Q gi|255764463|r 220 ------STRD---------LLKGDKKTYYLDPANVQEAIREASIDIQESADMLL---VKPGL-------PYLDVCFRIKE 274 (337)
Q Consensus 220 ------~S~p---------~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lM---VKPa~-------~yLDii~~~k~ 274 (337)
+++. +-.|=+..==++|+..-|++.++..+ +|+|. |-||- -.|+=||.+|+
T Consensus 84 ~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TPl~~~~~~L~~----~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~ 159 (216)
T TIGR01163 84 IITVHAEATEHIHRLLQLIKELGAKAGIVLNPATPLEALEYVLED----VDLVLLMSVNPGFGGQKFIPETLEKIRELRK 159 (216)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH----CCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 899843776267999999997189706886799998789989876----2989988760799884110578999999999
Q ss_pred HCC----CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 249----98999934618999999998889788999999999997726999982
Q gi|255764463|r 275 KFG----LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 275 ~~~----~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
..+ -+-.-=+| -|-+|.+ +-..+++||||.+++
T Consensus 160 ~id~~~~~~~~~ieV------------DGGv~~~-----ni~~~~~AGAD~~Va 196 (216)
T TIGR01163 160 MIDKLELGLSILIEV------------DGGVNED-----NIAEVAEAGADILVA 196 (216)
T ss_pred HHHHHCCCCCEEEEE------------CCCCCHH-----HHHHHHHCCCCEEEE
T ss_conf 998602799558997------------1798976-----799999758989998
No 142
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.83 E-value=10 Score=19.36 Aligned_cols=131 Identities=20% Similarity=0.209 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
+.+...+.++-+.+.||+.+=+-- .++. -..+|+.++++||++.|=+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEITl------rt~~----------a~~~I~~l~~~~p~~~vGa----------------- 71 (212)
T PRK06015 25 DVEHAVPLARALARGGLPAIEITL------RTPA----------ALDAIRAVAAEVEEAIVGA----------------- 71 (212)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC------CCCC----------HHHHHHHHHHHCCCCEEEE-----------------
T ss_conf 999999999999987998899968------9951----------9999999998699967954-----------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 6544628999999999999996289735-246676779999999998778857730033666435430101675310244
Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337)
Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337)
|-|.+- +|+-...+|||+++ +|. +|-.|.. .+. + .+++.+
T Consensus 72 -GTVl~~-------e~~~~a~~aGA~FiVSP~--~~~~v~~--~a~-~---~~i~~i----------------------- 112 (212)
T PRK06015 72 -GTILNA-------KQFEDAAKAGSRFIVSPG--TTQELLA--AAN-D---SDVPLL----------------------- 112 (212)
T ss_pred -EECCCH-------HHHHHHHHCCCCEEECCC--CCHHHHH--HHH-H---CCCCEE-----------------------
T ss_conf -211569-------999999984998998589--9999999--999-8---399773-----------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCEE
Q ss_conf 67777443157211478898888766408987995531145--89999999624-99899
Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPTF 281 (337)
Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~~ 281 (337)
.| ..... |+..-.+-|+|++=+=||-.. ...|+.++.-| .+++.
T Consensus 113 -PG--------v~Tps----Ei~~A~~~G~~~vKlFPA~~~gG~~~lkal~~p~p~~~~~ 159 (212)
T PRK06015 113 -PG--------AITPS----EVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFC 159 (212)
T ss_pred -CC--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEE
T ss_conf -78--------69999----9999998799989978430016899999985779999888
No 143
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.79 E-value=14 Score=18.30 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHH
Q ss_conf 145899999996249989999346189999999988897889
Q gi|255764463|r 263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKN 304 (337)
Q Consensus 263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~ 304 (337)
..+++..+.+|+.+++||.+-.-=.+-.+...+.+.|+.|.-
T Consensus 278 ~~~~~~a~~ik~~~~~Pvi~~G~i~~~~~ae~~l~~g~~DlV 319 (338)
T cd04733 278 AYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 105999999999849979998998999999999987995108
No 144
>TIGR02841 spore_YyaC putative sporulation protein YyaC; InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown..
Probab=61.71 E-value=14 Score=18.29 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=43.7
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC
Q ss_conf 9999888936763302563345544542157653799999999973014-479861332710011431
Q gi|255764463|r 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD 141 (337)
Q Consensus 75 e~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc 141 (337)
.++..+..+.|-+||- +.++- +|-| ++..++.|+++|++ .+|..|-||=..++=||=
T Consensus 24 ~~L~~~~~~~~~V~GT----L~~PV--HA~N----L~e~l~~I~k~h~~PFiIAiDACLG~~~~VG~i 81 (140)
T TIGR02841 24 TKLKKLSLNNFHVYGT----LEEPV--HAVN----LEEKLKIIKKKHKNPFIIAIDACLGKLKSVGHI 81 (140)
T ss_pred HHHHHCCCCCEEEEEC----CCCCC--CHHH----HHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEE
T ss_conf 7776427560488733----78770--1253----898999998626898189986246870132068
No 145
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=61.36 E-value=15 Score=18.25 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765-37999999999730144798613327100114310
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKNIPNIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcG 142 (337)
+...+.+.+.++.+.+.|+.++.+.|.+-+. .+-+.++. -++..++...+.+.| ||+-|
T Consensus 21 ~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~-----~~Ls~eEr~~v~~~~v~~~~grvp---viaG~------------ 80 (299)
T COG0329 21 SVDEEALRRLVEFLIAAGVDGLVVLGTTGES-----PTLTLEERKEVLEAVVEAVGGRVP---VIAGV------------ 80 (299)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-----HHCCHHHHHHHHHHHHHHHCCCCC---EEEEC------------
T ss_conf 8399999999999998499889979866572-----216999999999999999689777---89862------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCC---CCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf 01365446289999999999999962897352---4667---67799999999987788577300336664354301016
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIA---PSEM---MDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR 216 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdM---MDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR 216 (337)
|...-.++ .+.|-...+.|+|-+. |.-. -+|....-+...++. +.+|+=|
T Consensus 81 ----g~~~t~ea----i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~---~lPvilY------------- 136 (299)
T COG0329 81 ----GSNSTAEA----IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV---DLPVILY------------- 136 (299)
T ss_pred ----CCCCHHHH----HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC---CCCEEEE-------------
T ss_conf ----87779999----99999999709999998489788989799999999999851---8998999-------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 75310244677774431572114788988887664089879955311458999999962499-89999346
Q gi|255764463|r 217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGL-PTFAYQVS 286 (337)
Q Consensus 217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~-P~~aYqVS 286 (337)
..|.+....=-.|......+---++-||=+..-++-+++++..... ....|.-.
T Consensus 137 ----------------N~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~~~~~~~~~~f~v~~G~ 191 (299)
T COG0329 137 ----------------NIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEEIIAALGDRDFIVLSGD 191 (299)
T ss_pred ----------------ECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf ----------------7875248999999999982789889998478899999999986487662898266
No 146
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.20 E-value=15 Score=18.23 Aligned_cols=14 Identities=50% Similarity=0.382 Sum_probs=6.3
Q ss_pred HHHHHHHHCCCCEE
Q ss_conf 99999996289735
Q gi|255764463|r 160 HAAVIQADAGADII 173 (337)
Q Consensus 160 k~Al~~A~AGaDiv 173 (337)
+.|..+.+||||.|
T Consensus 291 ~~a~~Li~aGAD~v 304 (499)
T PTZ00314 291 DQAKNLIDAGADGI 304 (499)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999997499879
No 147
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.80 E-value=14 Score=18.40 Aligned_cols=130 Identities=20% Similarity=0.289 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
+.+...+.++-+.+-||+.+=+=- .++. | .++|+.++++||++.|=+
T Consensus 25 ~~~~a~~i~~al~~gGi~~iEiTl------~tp~---a-------~~~I~~l~~~~p~~~vGa----------------- 71 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTL------RTPA---A-------LEAIRAIRKEVPEALIGA----------------- 71 (212)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC------CCCH---H-------HHHHHHHHHHCCCCEEEE-----------------
T ss_conf 999999999999987997899957------8961---9-------999999997589817965-----------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 6544628999999999999996289735-246676779999999998778857730033666435430101675310244
Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224 (337)
Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~ 224 (337)
|-|.|-+ |+-...+|||+++ +|. +|-.|. +.+.+ .| ++.+ |
T Consensus 72 -GTV~~~e-------~~~~a~~aGA~FiVSP~--~~~~v~--~~a~~-~~---i~~i---------------------P- 113 (212)
T PRK05718 72 -GTVLNPE-------QLAQAIEAGAQFIVSPG--LTPPLL--KACQD-GP---IPLI---------------------P- 113 (212)
T ss_pred -EEECCHH-------HHHHHHHCCCCEEECCC--CCHHHH--HHHHH-CC---CCEE---------------------C-
T ss_conf -3313488-------99999984998998489--989999--99998-19---9765---------------------7-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHH--HHHHHHHHHHC-CCCE
Q ss_conf 67777443157211478898888766408987995531145--89999999624-9989
Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPY--LDVCFRIKEKF-GLPT 280 (337)
Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~y--LDii~~~k~~~-~~P~ 280 (337)
| ..... |+..-.+-|||++=+=||-.+ ...++.++.-| ++|.
T Consensus 114 --G--------v~Tps----Ei~~A~~~G~~~vK~FPA~~~gG~~~lkal~~p~p~i~~ 158 (212)
T PRK05718 114 --G--------VNTPS----ELMLAMELGLRTFKFFPAEASGGVKMLKALAGPFSDVRF 158 (212)
T ss_pred --C--------CCCHH----HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf --8--------69999----999999879998997876101799999998565899828
No 148
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221 This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=60.75 E-value=4.1 Score=22.01 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=55.8
Q ss_pred HHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 99999999888--9367633025633455445421576537999999999730---144798613327100114310013
Q gi|255764463|r 71 VEKIKQVADLG--IPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---PNIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 71 ~~eie~~~~lG--I~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---pdl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
..++|++.-+- ..++++=|+ +..-|+ |=-..|+++.+|+..-=+. |=|+| |
T Consensus 42 ~~~ie~L~P~~~lfdaivisPG--PC~P~e----Aa~~~Gii~~~i~h~aGkldevPILGv--------------C---- 97 (212)
T TIGR00566 42 LQEIEALLPLLPLFDAIVISPG--PCTPNE----AAISMGIILEAIRHFAGKLDEVPILGV--------------C---- 97 (212)
T ss_pred HHHHHHHCCCCCCCCEEEECCC--CCCCCH----HHCCHHHHHHHHHHHCCCCCCCCCCCC--------------C----
T ss_conf 3458763113563345676586--568321----220411799998742376226760201--------------0----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
Q ss_conf 6544628999999999999996289735246676779999999
Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRK 188 (337)
Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~ 188 (337)
|..||+.||+ |+|||--...|-|++..|+-
T Consensus 98 ------------LG~QA~~qA~-Gg~V~~a~~~~HGk~s~i~h 127 (212)
T TIGR00566 98 ------------LGHQALAQAF-GGDVVRANTVMHGKTSEIEH 127 (212)
T ss_pred ------------HHHHHHHHHC-CCCEEEECCCCCCCCCCEEE
T ss_conf ------------5568788742-87225421136873001247
No 149
>PRK08782 consensus
Probab=60.67 E-value=13 Score=18.57 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
-+.+...+.++-+.+-||+.+=+=- .++ -...+|+.+++++||+.|=+
T Consensus 26 ~~~~~a~~~~eal~~gGi~~iEiTl------rt~----------~a~~~i~~l~~~~p~~~vGa---------------- 73 (219)
T PRK08782 26 DTLDQARRVADALLEGGLPAIELTL------RTP----------VAIEALAMLKRELPNIVIGA---------------- 73 (219)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC------CCC----------HHHHHHHHHHHHCCCCEEEE----------------
T ss_conf 9999999999999987998799967------993----------39999999998689947999----------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf 36544628999999999999996289735-246
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADII-APS 176 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS 176 (337)
|-|.+- +|+-...+|||+++ .|.
T Consensus 74 --GTV~~~-------e~~~~a~~aGA~FiVSP~ 97 (219)
T PRK08782 74 --GTVLSE-------RQLRQSVDAGADFLVTPG 97 (219)
T ss_pred --EEECCH-------HHHHHHHHCCCCEEECCC
T ss_conf --970589-------999999984998998789
No 150
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=60.52 E-value=15 Score=18.15 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999999998889367633
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIF 88 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LF 88 (337)
++.+...++++.++|.+.|+++
T Consensus 163 v~~i~~~l~~L~~~GAr~i~V~ 184 (315)
T cd01837 163 VSNISSAIKRLYDLGARKFVVP 184 (315)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999998699689982
No 151
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=60.20 E-value=15 Score=18.12 Aligned_cols=130 Identities=11% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCC
Q ss_conf 786328899999999999988893676330256334554454215765379999999997301-4479861332710011
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIH 138 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~h 138 (337)
-|...++.+.+.++++...+.|.+++-+-.+.+ . . --.+.++++++.++ ++-++.|+ -+.||..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~G~~~~K~k~g~~-----~--------~-~d~~~v~avR~~~G~~~~l~vDa-n~~~~~~ 196 (352)
T cd03328 132 GGFTSYDDDRLREQLSGWVAQGIPRVKMKIGRD-----P--------R-RDPDRVAAARRAIGPDAELFVDA-NGAYSRK 196 (352)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC-----H--------H-HHHHHHHHHHHHHCCCCEEEECC-CCCCCHH
T ss_conf 686789989999999999975998660347999-----7--------8-88999999999748895398678-7688999
Q ss_pred CCC---------CC--CCCC-CCCHHHHHHHHHHH-------------------HHHHHHCCCCEEECCCCCCCHHHHHH
Q ss_conf 431---------00--1365-44628999999999-------------------99999628973524667677999999
Q gi|255764463|r 139 GHD---------GI--LCDG-EIVNDETIELISHA-------------------AVIQADAGADIIAPSEMMDGRVQEIR 187 (337)
Q Consensus 139 GHc---------Gi--~~~g-~IdND~Tl~~L~k~-------------------Al~~A~AGaDivAPSdMMDGrV~aIR 187 (337)
-== |+ +.+- .-+|=+.+..|.++ .-....-++|++-|-=|--|=+...|
T Consensus 197 ~Ai~~~~~l~~~~l~w~EeP~~~~d~~~~~~lr~~~~~~~pia~gE~~~~~~~~~~~i~~~a~Di~~~d~~~~GGit~~~ 276 (352)
T cd03328 197 QALALARAFADEGVTWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFL 276 (352)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCEEEECCCEECCHHHHH
T ss_conf 99999998423063738789996689999999983799976414866589899999998178785840411008699999
Q ss_pred HHHHHCCCCCCCEECHH
Q ss_conf 99987788577300336
Q gi|255764463|r 188 KKLDSHGHINVGIMPYV 204 (337)
Q Consensus 188 ~~Ld~~g~~~~~ImsYs 204 (337)
+..+-+.-.+++++.+.
T Consensus 277 kia~lA~a~gv~~~~H~ 293 (352)
T cd03328 277 QAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHCCCEECCCC
T ss_conf 99999998499045354
No 152
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=60.19 E-value=15 Score=18.12 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCCC----CCC----CCC---CCHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 799999999973014-4798613327100114310----013----654---4628999999999999996289735246
Q gi|255764463|r 109 LINEGICAIKKNIPN-IGIITDVALDPFTIHGHDG----ILC----DGE---IVNDETIELISHAAVIQADAGADIIAPS 176 (337)
Q Consensus 109 lv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHcG----i~~----~g~---IdND~Tl~~L~k~Al~~A~AGaDivAPS 176 (337)
.+.+|++.+|+.+++ .-++. .|-.|+|.-++.- ++. +.+ -.-+...+.+.+.+..+.+||||+|...
T Consensus 110 ~~~eai~~l~~~~~~~~plig-~~ggP~Tla~~l~g~~~~~~~l~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~ 188 (330)
T cd03465 110 ELLEAIRLLKEELGDRVPVIG-AVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYIS 188 (330)
T ss_pred HHHHHHHHHHHHCCCCCCEEE-ECCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999997289874797-5565799988731848999999979999999999999999999999996399889983
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 676779999999998778857730033666435430101-6753102446777744315721147889888876640898
Q gi|255764463|r 177 EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESAD 255 (337)
Q Consensus 177 dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD 255 (337)
|..=|.. +|| -+.--.|+.|+ +......+.. + ....-+.-.+. ..+.+... +-|+|
T Consensus 189 d~~a~~~----------------~ls--~~~f~~f~~p~~k~i~~~~~~~-~-~~~ilh~~g~~-~~~l~~~~--~~~~~ 245 (330)
T cd03465 189 DPWASSS----------------ILS--PEDFKEFSLPYLKKVFDAIKAL-G-GPVIHHNCGDT-APILELMA--DLGAD 245 (330)
T ss_pred CCCCCCC----------------CCC--HHHHHHHHHHHHHHHHHHHHHC-C-CCEEEECCCCH-HHHHHHHH--HCCCC
T ss_conf 5666655----------------699--9999999899999999997754-9-98367407862-87999998--65888
Q ss_pred EEEECCCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC---CEEEE
Q ss_conf 79955311458999999962499-89999346189999999988897889999999999977269---99982
Q gi|255764463|r 256 MLLVKPGLPYLDVCFRIKEKFGL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGC---DGIFT 324 (337)
Q Consensus 256 ~lMVKPa~~yLDii~~~k~~~~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGA---d~Iit 324 (337)
.+=+-.... +.++++.+.- -+..=++.---.++ .| +.+++.-|+...++.+|. .+|+.
T Consensus 246 ~~~~d~~~~----l~~~~~~~~~~~~i~Gnldp~~~l~-----~g--t~e~i~~~v~~~l~~~~~~~~g~I~~ 307 (330)
T cd03465 246 VFSIDVTVD----LAEAKKKVGDKACLMGNLDPIDVLL-----NG--SPEEIKEEVKELLEKLLKGGGGYILS 307 (330)
T ss_pred EEEECCCCC----HHHHHHHHCCCCEEEECCCHHHHHC-----CC--CHHHHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 898588899----9999998099925881798789875-----79--99999999999999853799998981
No 153
>pfam01188 MR_MLE Mandelate racemase / muconate lactonizing enzyme, C-terminal domain. C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain.
Probab=60.17 E-value=15 Score=18.11 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECC
Q ss_conf 9999999999988893676330256334554454215765379999999997301-44798613
Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDV 130 (337)
Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DV 130 (337)
+.+++++++..+.|-+++-+=.+..+-.+ | ...|++|++.+| ++.++.|.
T Consensus 2 e~~~~~a~~~~~~Gf~~~Kik~g~~~~~~----------d---~~~i~~ir~~~g~~~~l~vD~ 52 (98)
T pfam01188 2 EELAAEAEEAVEAGFRAFKLKIGRGDLAD----------D---LARVAAVREAVGDDVRLRVDA 52 (98)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHH----------H---HHHHHHHHHHCCCCCEEEECC
T ss_conf 89999999999879987997448999999----------9---999999999759998798758
No 154
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.22 E-value=16 Score=18.01 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=67.9
Q ss_pred EEEECCCCCEEECCCCCCCCC-------------------------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 666758988110488878632-------------------------8899999999999988893676330256334554
Q gi|255764463|r 44 IFLTSGEKTVESINSMPDVMR-------------------------MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNN 98 (337)
Q Consensus 44 iFV~eg~~~k~~I~SMPGv~R-------------------------~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~ 98 (337)
+-++|..+=+-+|++.|..-+ ||.+.+.+-++.+...||+-|-=| =+|-+.
T Consensus 37 ~HltDdq~wr~ei~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEI-D~PGH~--- 112 (357)
T cd06563 37 WHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAAERGITVIPEI-DMPGHA--- 112 (357)
T ss_pred EEEECCCCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC-CCCHHH---
T ss_conf 9775488861210786226664351676656666556788777887499999999999997699897625-761167---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--------HCCC
Q ss_conf 45421576537999999999730144798613327100114310013654462899999999999999--------6289
Q gi|255764463|r 99 TGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQA--------DAGA 170 (337)
Q Consensus 99 ~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A--------~AGa 170 (337)
+++-+.+|++...++-+.........|+.+ .+.|++|.+.+.+.=--.+ --|.
T Consensus 113 ----------------~a~~~~~pel~~~~~~~~~~~~~~~~~~~L---~p~~~~ty~fl~~v~~E~~~lFp~~~~HlGG 173 (357)
T cd06563 113 ----------------LAALAAYPELGCTGGPGSVVSVQGVVSNVL---CPGKPETYTFLEDVLDEVAELFPSPYIHIGG 173 (357)
T ss_pred ----------------HHHHHHCHHHCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf ----------------899985946408888876566788666411---5898789999999999999758976587557
Q ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 735246676779999999998778857
Q gi|255764463|r 171 DIIAPSEMMDGRVQEIRKKLDSHGHIN 197 (337)
Q Consensus 171 DivAPSdMMDGrV~aIR~~Ld~~g~~~ 197 (337)
|=|....- . .--+|++-+.++|+++
T Consensus 174 DEv~~~~W-~-~~p~i~~~~~~~~~~~ 198 (357)
T cd06563 174 DEVPKGQW-E-KSPACQARMKEEGLKD 198 (357)
T ss_pred CCCCCCHH-H-CCHHHHHHHHHCCCCC
T ss_conf 44774411-0-3879999999809999
No 155
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=59.18 E-value=11 Score=19.17 Aligned_cols=89 Identities=12% Similarity=0.249 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 88999863477888773311666758988110488878632889999999999998889367633025633455445421
Q gi|255764463|r 24 NWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHI 103 (337)
Q Consensus 24 ~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA 103 (337)
+.+|++..++.|.......++........ .++.+++.+.+.++.+..+|++.+.++++-.....+. .+.
T Consensus 29 ~~l~~~~~~~gl~i~~~~~~~~~~~~~~~---------~r~~~~~~~~~~l~~a~~lG~~~i~~~~g~~~~~~~~--~~~ 97 (201)
T pfam01261 29 EELKALLKEYGLEITSLNPSLGLLEPDER---------EREAALEALKRAIELAAALGAKVVVVHPGGALPGEDR--EEA 97 (201)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH--HHH
T ss_conf 99999999709979999778654588989---------9999999999999999973995899826887889999--999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 57653799999999973014479
Q gi|255764463|r 104 IDPDNLINEGICAIKKNIPNIGI 126 (337)
Q Consensus 104 ~n~dglv~rAIr~IK~~fpdl~v 126 (337)
| .-+.+.++.+-+...+..|
T Consensus 98 ~---~~~~~~l~~~~~~a~~~gi 117 (201)
T pfam01261 98 L---DRLAESLNELAELAEEYGV 117 (201)
T ss_pred H---HHHHHHHHHHHHHHHHCCE
T ss_conf 9---9999999999998875573
No 156
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=58.97 E-value=16 Score=17.98 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=44.5
Q ss_pred HHHHHHHHHHCCCCEEEEEECCC-----CCCCC----------------CCCCCCCCCCCHHHHHHHHHHHHH----C-C
Q ss_conf 99999999988893676330256-----33455----------------445421576537999999999730----1-4
Q gi|255764463|r 70 AVEKIKQVADLGIPAIAIFPNIP-----MDLRN----------------NTGSHIIDPDNLINEGICAIKKNI----P-N 123 (337)
Q Consensus 70 L~~eie~~~~lGI~av~LFp~I~-----~~~Kd----------------~~GseA~n~dglv~rAIr~IK~~f----p-d 123 (337)
..-=+..+.+|||+.|=|-|+-+ +..++ ++||.|-||.+|..| |+.+|.-. - .
T Consensus 184 ~~TGl~y~keLGVTHVqLLP~fDf~~~de~~~~Fe~~YNWGYDP~nynvPEGSYsTdP~~P~~R-I~ELKqmi~~lH~~G 262 (655)
T TIGR02104 184 VSTGLDYLKELGVTHVQLLPVFDFASVDEEDPNFENAYNWGYDPLNYNVPEGSYSTDPYDPATR-ILELKQMIQALHENG 262 (655)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCC
T ss_conf 5104355543365356543411224102667787322776647665537775436788877307-678889999998668
Q ss_pred CEEEECCCC
Q ss_conf 479861332
Q gi|255764463|r 124 IGIITDVAL 132 (337)
Q Consensus 124 l~vi~DVcL 132 (337)
|.||-||=.
T Consensus 263 irVImDVVY 271 (655)
T TIGR02104 263 IRVIMDVVY 271 (655)
T ss_pred CEEEEEECC
T ss_conf 879985024
No 157
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=58.85 E-value=16 Score=17.97 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q ss_conf 9999999997301447986
Q gi|255764463|r 110 INEGICAIKKNIPNIGIIT 128 (337)
Q Consensus 110 v~rAIr~IK~~fpdl~vi~ 128 (337)
+..+|+.||+.||++-||+
T Consensus 256 vi~~ik~ik~~~~~v~via 274 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIA 274 (486)
T ss_pred HHHHHHHHHHCCCCCCEEE
T ss_conf 8999999974078773687
No 158
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=58.67 E-value=15 Score=18.27 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCC
Q ss_conf 63288999999999999888936763302563345544542157653799999999973014-47986133271001143
Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALDPFTIHGH 140 (337)
Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGH 140 (337)
+.-.+.+..++.++.+++.||+.+=+=- .++ + -.++|+.++++||+ +.|=+
T Consensus 16 lR~~~~~~a~~~~~al~~~Gi~~iEVTl------~tp--------~--a~~~I~~l~~~~~~~~~iGA------------ 67 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPL------NSP--------D--PFDSIAALVKALGDDALIGA------------ 67 (206)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC------CCC--------C--HHHHHHHHHHHCCCCEEEEE------------
T ss_conf 9589999999999999986998899917------997--------6--99999999996798659986------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf 100136544628999999999999996289735-246
Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADII-APS 176 (337)
Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS 176 (337)
|-|.|-+ |+-.-.+|||+++ .|.
T Consensus 68 ------GTVlt~e-------~~~~ai~aGA~FiVSP~ 91 (206)
T PRK09140 68 ------GTVLSPE-------QVDRLADAGGRLIVTPN 91 (206)
T ss_pred ------EECCCHH-------HHHHHHHCCCCEEECCC
T ss_conf ------2046799-------99999985999999999
No 159
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=58.59 E-value=16 Score=17.94 Aligned_cols=184 Identities=20% Similarity=0.219 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC
Q ss_conf 99999999999888936763302563345544542157653799999999973014479861332710011431001365
Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDG 147 (337)
Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g 147 (337)
..-++.++...+.|..-+.+. -++ |+. +..+.-...|+.|-+.+. .|.+ -+|
T Consensus 29 gdP~~~a~~~~~~g~d~i~iv-DLd-------a~~--~~~~~n~~~i~~i~~~~~----------~pi~--------vgG 80 (229)
T pfam00977 29 GDPVELAKRYEEEGADELHFV-DLD-------AAK--EGRPVNLDLIEEIAEEVF----------IPVQ--------VGG 80 (229)
T ss_pred CCHHHHHHHHHHCCCCEEEEE-ECC-------CCC--CCCHHHHHHHHHHHHHCC----------CCEE--------EEC
T ss_conf 999999999998799989999-686-------630--268106999999998669----------8789--------964
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 44628999999999999996289735246676779999999998778857730033666435430101675310244677
Q gi|255764463|r 148 EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKG 227 (337)
Q Consensus 148 ~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~g 227 (337)
-|.+-+.++.+ -++|||-|.-+..---.-..+++....-|-+ ..+.|--.|.-- + -...|
T Consensus 81 GIrs~e~~~~~-------l~~Ga~kvvigs~~~~~~~~~~~~~~~~g~q-~iv~siD~k~~~-----~-------v~~~~ 140 (229)
T pfam00977 81 GIRSLEDAERL-------LSAGADKVIIGTAAVKNPELIKEAAEKFGSQ-CIVVAIDAKRDG-----K-------VAING 140 (229)
T ss_pred CEEEHHHHHHH-------HHCCCCEEEECCCHHHCHHHHHHHHHHCCCC-CEEEEEEECCCC-----E-------EEEEC
T ss_conf 56118999999-------9769989995860430937899999980986-479999871451-----7-------99806
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf 774431572114788988887664089879955-------3114589999999624998999934618999999998889
Q gi|255764463|r 228 DKKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW 300 (337)
Q Consensus 228 dr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~ 300 (337)
-++.-.+++. |.+.. -.+.|+--+++- =..|-++++..+++.+++|+.+ || |.
T Consensus 141 ~~~~~~~~~~---~~i~~---~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~~~pii~---~G-----------Gv 200 (229)
T pfam00977 141 WREETGIDAV---EWAKK---LEELGAGEILLTDIDRDGTLSGPDLELTRELAEAVNIPVIA---SG-----------GV 200 (229)
T ss_pred CCCCCCCCHH---HHHHH---HHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC-----------CC
T ss_conf 4335674433---44567---76516750688775042756668999999999768998999---85-----------89
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 788999999999997726999982
Q gi|255764463|r 301 INKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 301 ~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
-+.++. ..++..|++.++.
T Consensus 201 ~~~~di-----~~l~~~g~~gviv 219 (229)
T pfam00977 201 GSLEDL-----KELFSEGVDGVIA 219 (229)
T ss_pred CCHHHH-----HHHHHCCCCEEEE
T ss_conf 999999-----9999879989998
No 160
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=57.65 E-value=17 Score=17.83 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH-HHHHHCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999998778857730033666435430101-67531024-------467777443157211478898888766408
Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY-RDAISTRD-------LLKGDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF-RdA~~S~p-------~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
-+.+..+++...|...++|++=.....|.+|.-| ++. |-.- .+......=..++........+...-.+.|
T Consensus 93 ~~~a~~~a~~~~~~~ri~vl~t~~t~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (212)
T pfam01177 93 IVEAALKALALLGAKRVGVLATYGTIVSGLYQELLAEA-GIEVVAPAIRLGIVEVLELGRIEEASVEALAAALERLAEDG 171 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 47899999997189808999564244379999999975-99278524355325599928999999999999998875289
Q ss_pred CCEEEE-CCCHHHH-HHHHHHHHHCCCCEE
Q ss_conf 987995-5311458-999999962499899
Q gi|255764463|r 254 ADMLLV-KPGLPYL-DVCFRIKEKFGLPTF 281 (337)
Q Consensus 254 AD~lMV-KPa~~yL-Dii~~~k~~~~~P~~ 281 (337)
+|.+.. =-.||++ +.+..+...+++|+.
T Consensus 172 ~d~ivLgCT~l~~~~~~~~~l~~~~gvpvi 201 (212)
T pfam01177 172 ADAVILGCTELPLLLELIEALEPELGVPVI 201 (212)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 899998588828799999998650399198
No 161
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=57.53 E-value=17 Score=17.82 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 63288999999999999888936763302563345544542157653799999999973014
Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN 123 (337)
Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd 123 (337)
-+|-..+-+++.++.+.+.|...|.| + |..|- ..|. -+...++.+++.+|.
T Consensus 152 a~R~d~efl~ev~~aa~~aGa~~i~l----~----DTvG~--~~P~-~v~~~i~~l~~~~~~ 202 (530)
T PRK12344 152 GYKANPEYALATLKAAAEAGADWVVL----C----DTNGG--TLPH-EVAAIVAEVRARLPG 202 (530)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE----C----CCCCC--CCHH-HHHHHHHHHHHHCCC
T ss_conf 43379999999999998529960023----7----88655--5889-999999999974899
No 162
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.52 E-value=17 Score=17.82 Aligned_cols=116 Identities=13% Similarity=0.197 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCHHHCCCCCCCC--
Q ss_conf 9999999999888936763302563345544542157653799999999973014--479861332710011431001--
Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALDPFTIHGHDGIL-- 144 (337)
Q Consensus 69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi~-- 144 (337)
++.+++..+.++|...|=+. +++ .|+. .++-..-..-++.||+..-+ +-|- -+|+ .+|+..-
T Consensus 17 sw~e~f~~Ak~~Gfd~IE~s--iDe--~d~~----~~~l~~~~~~~~~i~~~~~~~gl~I~-s~~~-----s~~~~~pl~ 82 (284)
T PRK13210 17 SWPERLVLAKECGFDFVEMS--VDE--TDER----LARLDWSKEERLELVKAIYETGVRIP-SMCL-----SAHRRFPFG 82 (284)
T ss_pred CHHHHHHHHHHCCCCEEEEE--CCC--CCCC----CCCCCCCHHHHHHHHHHHHHCCCEEE-EEEC-----CCCCCCCCC
T ss_conf 99999999998699889996--067--5422----25789998999999999998298356-6415-----566689999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC--CC---------CCCHHHHHHHHHHHCCCCCC
Q ss_conf 36544628999999999999996289735246--67---------67799999999987788577
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADIIAPS--EM---------MDGRVQEIRKKLDSHGHINV 198 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS--dM---------MDGrV~aIR~~Ld~~g~~~~ 198 (337)
..+.-.-++.++.+.+.-..-++=|+++|.-. |. .+--+.++|+.++-+--.+|
T Consensus 83 s~d~~~r~~~le~l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~Ae~~gV 147 (284)
T PRK13210 83 SRDEATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98989999999999999999998099789968876666869889999999999999999998399
No 163
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase; InterPro: IPR010197 This entry describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Also included are enzymes with the common name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase . Members are restricted to the are low GC Gram-positive bacteria and archaea. .
Probab=56.79 E-value=17 Score=17.74 Aligned_cols=56 Identities=14% Similarity=0.389 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 8899999999999988893676330256334554454215765379999999997301447986133271001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
-+++..+|++|.+.+.|.+-|-|= |.+.. + ..-++++++.||++-++.|-- -+|+.
T Consensus 133 ~~~e~~lk~ie~~~~~g~~RIKlK--i~Pq~-~-------------~~L~~~~~~~FP~i~L~~DAN-~sy~~ 188 (326)
T TIGR01928 133 AKLEEMLKEIESLKKEGYKRIKLK--ISPQI-E-------------VDLVKKVRKRFPDIPLVVDAN-ESYEL 188 (326)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE--ECCCC-C-------------HHHHHHHHHHCCCCEEEEECC-CCCCC
T ss_conf 765789999999985698078875--16887-5-------------347677676379723897337-78885
No 164
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=56.74 E-value=8.2 Score=19.94 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 7677999999999877885773003
Q gi|255764463|r 178 MMDGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 178 MMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
-+---+..+|+.||.+||.+|.|+.
T Consensus 242 d~~~l~~~vR~~LD~~G~~~vkIv~ 266 (343)
T PRK08662 242 NFRKIVEEVRWTLDLHGYSHVKIFV 266 (343)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 7799999999985455799828999
No 165
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=56.34 E-value=18 Score=17.69 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=50.2
Q ss_pred HCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 73311666758988110488878632889999999999998889367633025633455445421576537999999999
Q gi|255764463|r 39 DLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK 118 (337)
Q Consensus 39 dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK 118 (337)
-+=.|+.--=|-..++.|+.--.....+.+.+.+++++..+.|.+++-+ |. .+.+++++
T Consensus 99 ~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~e~~~~a~~~~~~Gf~~~K~--------k~-------------~~~i~avR 157 (361)
T cd03322 99 AAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGYRAIRV--------QL-------------PKLFEAVR 157 (361)
T ss_pred HCCCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--------CH-------------HHHHHHHH
T ss_conf 8599599981897787478999638899699999999888659887874--------52-------------99999999
Q ss_pred HHHC-CCEEEECCCCCHHHC
Q ss_conf 7301-447986133271001
Q gi|255764463|r 119 KNIP-NIGIITDVALDPFTI 137 (337)
Q Consensus 119 ~~fp-dl~vi~DVcLc~YT~ 137 (337)
+.++ ++-+|.|.. +.||.
T Consensus 158 ~~~G~~~~l~vDan-~~~~~ 176 (361)
T cd03322 158 EKFGFEFHLLHDVH-HRLTP 176 (361)
T ss_pred HHHCCCCEEECCCC-CCCCH
T ss_conf 97299970851255-68999
No 166
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390 This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP) is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=56.24 E-value=13 Score=18.55 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=51.8
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCH----HHHHHHHHHHHHCCCC-EEEEEECCCCCCC--CCCCCCCCCCCCHHHHHH
Q ss_conf 11666758988110488878632889----9999999999988893-6763302563345--544542157653799999
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSI----DVAVEKIKQVADLGIP-AIAIFPNIPMDLR--NNTGSHIIDPDNLINEGI 114 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Si----d~L~~eie~~~~lGI~-av~LFp~I~~~~K--d~~GseA~n~dglv~rAI 114 (337)
.|+-+-.-.+.++.-.+.| .|.==+ .-+.+.++++.++||. .|.|=|++-=- | +. ..|=-+-+.+
T Consensus 126 ~~~vlMH~~g~P~~~q~~~-~Y~dv~~e~~~fl~~~~~~~~~~Gv~~~I~LDPG~GF~-K~~t~------~~Nl~ll~~l 197 (268)
T TIGR01496 126 VPLVLMHMRGTPETMQENP-RYEDVVEEVLRFLEARAEELLAAGVAERIILDPGIGFG-KSDTV------EHNLELLKRL 197 (268)
T ss_pred CCEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCCH------HHHHHHHHHH
T ss_conf 9889876876388766677-76566899999999999999975886657871775778-88887------6789999868
Q ss_pred HHHHHHHCC-CEEEECCCCCHHHCCCCCCCCCC---CCCCH--H---HHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999973014-47986133271001143100136---54462--8---999999999999996289735
Q gi|255764463|r 115 CAIKKNIPN-IGIITDVALDPFTIHGHDGILCD---GEIVN--D---ETIELISHAAVIQADAGADII 173 (337)
Q Consensus 115 r~IK~~fpd-l~vi~DVcLc~YT~hGHcGi~~~---g~IdN--D---~Tl~~L~k~Al~~A~AGaDiv 173 (337)
..++..++= +++ |+-++ |.+.+ - +=+.--.-.++..++.||++|
T Consensus 198 ~~f~~~lg~PlL~---------------G~SRK~fiG~~~gg~~~~~~R~~Gt~a~~~~a~~~Ga~iv 250 (268)
T TIGR01496 198 EEFKAVLGYPLLV---------------GVSRKSFIGALLGGETPPEERLEGTLAASAYAVQKGADIV 250 (268)
T ss_pred HHHHHHHCCCCEE---------------ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999985770212---------------0110468886516788975642688999999986798679
No 167
>PRK06845 consensus
Probab=55.68 E-value=0.79 Score=26.82 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred CHHHHHHHHCCCCCHHHC---CCCEEEECCCCC---EEEC-------CCCCC--CCCCCHH--HHHHHHHHHHHCCCCEE
Q ss_conf 988999863477888773---311666758988---1104-------88878--6328899--99999999998889367
Q gi|255764463|r 23 SNWIREMVREHRLSVSDL---ILPIFLTSGEKT---VESI-------NSMPD--VMRMSID--VAVEKIKQVADLGIPAI 85 (337)
Q Consensus 23 ~~~iR~Lv~Et~Ls~~dL---I~PiFV~eg~~~---k~~I-------~SMPG--v~R~Sid--~L~~eie~~~~lGI~av 85 (337)
...++.++..+.|.+++. |+=-.+..|.+. -..+ .+.|+ |.|.--. ..+...-..+..|--.+
T Consensus 31 ~~a~~~al~~~gi~~~~Id~vi~G~~~~~g~~~~~~aR~~aL~aGlp~~vp~~tV~~~CaSG~~Ai~~A~~~I~sG~~dv 110 (392)
T PRK06845 31 VAAAKAALEQAGVSPEDIGHVVFGNVIQTGKDAIYLARHIGLKAGLPVGVPALTVNRLCGSGFEAIIQAAKLIYLGEAEA 110 (392)
T ss_pred HHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999871979899798999815645654334999999976999888748884430388999999999985799767
Q ss_pred EEEECCCC
Q ss_conf 63302563
Q gi|255764463|r 86 AIFPNIPM 93 (337)
Q Consensus 86 ~LFp~I~~ 93 (337)
.|=+++++
T Consensus 111 vlagGvEs 118 (392)
T PRK06845 111 VLAGGVES 118 (392)
T ss_pred EEECCEEC
T ss_conf 88625520
No 168
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=55.43 E-value=18 Score=17.59 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=95.4
Q ss_pred CCCCEEEECCCCCEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33116667589881104888-78632889999999999998889367633-02563345544542157653799999999
Q gi|255764463|r 40 LILPIFLTSGEKTVESINSM-PDVMRMSIDVAVEKIKQVADLGIPAIAIF-PNIPMDLRNNTGSHIIDPDNLINEGICAI 117 (337)
Q Consensus 40 LI~PiFV~eg~~~k~~I~SM-PGv~R~Sid~L~~eie~~~~lGI~av~LF-p~I~~~~Kd~~GseA~n~dglv~rAIr~I 117 (337)
+=.|+.--=|-..++.|+.- -+.+.-+.+.+.++++++.+.|.+++-+= +.-|. | +.++... -...++++
T Consensus 93 ~g~Pv~~LLGG~~r~~i~~Yas~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~p~---~--~~~~~~~---d~~~v~av 164 (341)
T cd03327 93 RGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPS---D--GHAGLRK---NVELVRAI 164 (341)
T ss_pred CCCCHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC---C--CHHHHHH---HHHHHHHH
T ss_conf 59979999379876760267852789999999999999998399879971577887---5--0445999---99999999
Q ss_pred HHHH-CCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9730-1447986133271001143100136544628999999999999996289735-2466767799999999987788
Q gi|255764463|r 118 KKNI-PNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII-APSEMMDGRVQEIRKKLDSHGH 195 (337)
Q Consensus 118 K~~f-pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~ 195 (337)
++.+ |++-++.|. -+.||. +..+ +.+-..++.+..++ -|-..- .+...++.-+ .
T Consensus 165 r~~~G~~~~l~vD~-n~~~~~--------------~~A~----~~~~~l~~~~~~w~EeP~~~~--d~~~~~~l~~---~ 220 (341)
T cd03327 165 REAVGYDVDLMLDC-YMSWNL--------------NYAI----KMARALEKYELRWIEEPLIPD--DIEGYAELKK---A 220 (341)
T ss_pred HHHHCCCCEEECCC-CCCCCH--------------HHHH----HHHHHHHHCCCEEEECCCCCC--CHHHHHHHHH---C
T ss_conf 99839996697035-558999--------------9999----997764104601364689967--8999999873---0
Q ss_pred CCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH----HHHHHHHH
Q ss_conf 57730033666435430101675310244677774431572114788988887664089879955311----45899999
Q gi|255764463|r 196 INVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL----PYLDVCFR 271 (337)
Q Consensus 196 ~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~----~yLDii~~ 271 (337)
.+++|.. +-..| .+....+.+ ...++|+++.|+.- +=.=-|..
T Consensus 221 ~~ipIa~-------------------------gE~~~--~~~~~~~~i------~~~a~di~~~d~~~~GGit~~~~ia~ 267 (341)
T cd03327 221 TGIPIST-------------------------GEHEY--TVYGFKRLL------EGRAVDILQPDVNWVGGITELKKIAA 267 (341)
T ss_pred CCCCEEE-------------------------CCCCC--CHHHHHHHH------HHHCCCEEEECCCEECCHHHHHHHHH
T ss_conf 9998980-------------------------98888--999999999------86188979824353186999999999
Q ss_pred HHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 99624998999934618999999998
Q gi|255764463|r 272 IKEKFGLPTFAYQVSGEYAMIKAASL 297 (337)
Q Consensus 272 ~k~~~~~P~~aYqVSGEYami~~a~~ 297 (337)
+.+.+++|+.. |.++.. .++.++.
T Consensus 268 ~A~~~gi~v~p-H~~~~~-~~h~~aa 291 (341)
T cd03327 268 LAEAYGVPVVP-HASQIY-NYHFIMS 291 (341)
T ss_pred HHHHCCCCEEE-CCHHHH-HHHHHHH
T ss_conf 99985991851-155999-9999997
No 169
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.14 E-value=17 Score=17.84 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCC
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431001
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGIL 144 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~ 144 (337)
-+.+.....++.+.+-||+.+=+- ..++.+. ..+...++..++++|++.|=+
T Consensus 25 ~~~e~a~~~a~aL~~gGi~~iEiT------lrt~~a~------~~i~~l~~~~~~~~p~~~iGa---------------- 76 (223)
T PRK07114 25 SDIEVAKKVVKACYDGGVRAFEFT------NRGDFAH------EVFGELVKYAAKECPEMILGV---------------- 76 (223)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE------CCCCCHH------HHHHHHHHHHHHHCCCCEEEE----------------
T ss_conf 899999999999998899889995------8896589------999999999986689808965----------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf 36544628999999999999996289735-246
Q gi|255764463|r 145 CDGEIVNDETIELISHAAVIQADAGADII-APS 176 (337)
Q Consensus 145 ~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS 176 (337)
|-|.+-+ |+-...+|||+++ .|.
T Consensus 77 --GTVl~~~-------~~~~a~~aGA~FiVSP~ 100 (223)
T PRK07114 77 --GSIVDAA-------TAALYIQLGANFVVGPL 100 (223)
T ss_pred --ECCCCHH-------HHHHHHHCCCCEEECCC
T ss_conf --5188999-------99999985998999999
No 170
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=54.90 E-value=19 Score=17.54 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=34.7
Q ss_pred HHHHCCCCEEEEC----CC---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 7664089879955----31---1458999999962499899993461899999999888978899999999999772699
Q gi|255764463|r 248 IDIQESADMLLVK----PG---LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 248 ~D~~EGAD~lMVK----Pa---~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd 320 (337)
.-.+.|+.-+++- =| .+-++++..+++.+++|+.+ || |.-+.++ +..++.+|++
T Consensus 154 ~~~~~g~geiilt~i~~dGt~~G~d~~ll~~i~~~~~~p~i~---~G-----------Gv~s~~d-----i~~l~~~g~~ 214 (234)
T cd04732 154 RFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIA---SG-----------GVSSLDD-----IKALKELGVA 214 (234)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EE-----------CCCCHHH-----HHHHHHCCCC
T ss_conf 997458646998764256653568999999998657998999---81-----------8999999-----9999977998
Q ss_pred EEE
Q ss_conf 998
Q gi|255764463|r 321 GIF 323 (337)
Q Consensus 321 ~Ii 323 (337)
.++
T Consensus 215 gvi 217 (234)
T cd04732 215 GVI 217 (234)
T ss_pred EEE
T ss_conf 999
No 171
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=54.41 E-value=19 Score=17.48 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=33.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 888786328899999999999988893676330256334
Q gi|255764463|r 57 NSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDL 95 (337)
Q Consensus 57 ~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~ 95 (337)
+.=|+-|.+|.|.+.+.++++.+.|++-|.+=+++.+++
T Consensus 27 ~~~~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~~P~~ 65 (322)
T TIGR03550 27 PGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEE 65 (322)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 999887747999999999999977987999648868003
No 172
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=54.38 E-value=19 Score=17.48 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCEEE
Q ss_conf 3288999999999999888936763302563345544542157653799999999973--0144798
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN--IPNIGII 127 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~--fpdl~vi 127 (337)
+||+--.+.+.++++.+.|+..++++|--|...-...|| .....-+.+++. .|++-+|
T Consensus 94 mry~~P~i~~~l~~l~~~g~~~iv~lPlyPqyS~sTt~S-------~~~~~~~~~~~~~~~~~i~~I 153 (159)
T cd03411 94 MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGS-------YLDEVERALKKLRPAPELRVI 153 (159)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH-------HHHHHHHHHHHCCCCCEEEEE
T ss_conf 432799899999999854888499997987413144899-------999999999964899848982
No 173
>KOG0133 consensus
Probab=53.97 E-value=13 Score=18.58 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCC--HHHHHHHHHHHHHCCCCEEE
Q ss_conf 5578885856312898899986347788877331166675898811048887863288--99999999999988893676
Q gi|255764463|r 9 HKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMS--IDVAVEKIKQVADLGIPAIA 86 (337)
Q Consensus 9 ~~~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~S--id~L~~eie~~~~lGI~av~ 86 (337)
.-+.+.|+.-|+--|+++-+ .+.-++.++|+||-+.+... .+++|..|+. .+.|...=..+.+++++-+.
T Consensus 6 ~~v~wfr~~lR~~dnpal~~-----a~~~~~~~~~v~i~d~~~~~---~~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v 77 (531)
T KOG0133 6 KSVHWFRKGLRLHDNPALLA-----AAAGKEPVRPVFILDPEEAG---SSNVGRNRWRFLLQSLEDLDQSLRELNSRLFV 77 (531)
T ss_pred CEEEECCCCCCCCCCHHHHH-----HHCCCCCCEEEEEECHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 35775204853135733688-----75557873017975876741---34655567999999888889999985796689
No 174
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=53.93 E-value=19 Score=17.50 Aligned_cols=139 Identities=20% Similarity=0.225 Sum_probs=82.7
Q ss_pred CCCEEEECCCCCEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 311666758988110488878632-8899999999999988893676330256334554454215765379999999997
Q gi|255764463|r 41 ILPIFLTSGEKTVESINSMPDVMR-MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK 119 (337)
Q Consensus 41 I~PiFV~eg~~~k~~I~SMPGv~R-~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~ 119 (337)
+.|-+|+=-++.++++.|=-|..- -..+.|.+.++++.+.||+ |-|| |+++.+ .|...|+
T Consensus 82 ~kP~~vtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~~Ir-vSLF--IDPd~~----------------qi~~a~~ 142 (234)
T cd00003 82 VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIR-VSLF--IDPDPE----------------QIEAAKE 142 (234)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEEE--ECCCHH----------------HHHHHHH
T ss_conf 49987898788878641788926654788999999999865982-7997--279878----------------9999998
Q ss_pred HHCC-CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 3014-479861332710011431001365446289999999999999962897352466767799999999987788577
Q gi|255764463|r 120 NIPN-IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINV 198 (337)
Q Consensus 120 ~fpd-l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~ 198 (337)
--.| +-+-|- +|-.. . +.-..++.++.+.+.|..-.+.|-.+=|=-|--=.-+..+.+ -.+...+
T Consensus 143 ~Gad~VElhTG----~Ya~a-----~--~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~---ip~i~Ev 208 (234)
T cd00003 143 VGADRVELHTG----PYANA-----Y--DKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAK---IPGIAEL 208 (234)
T ss_pred HCCCEEEEECH----HHHHH-----C--CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHC---CCCCEEE
T ss_conf 49399998247----87863-----4--810399999999999999998598785478988767999855---8997288
Q ss_pred CEECHHHHHHHHHHC
Q ss_conf 300336664354301
Q gi|255764463|r 199 GIMPYVAKFNSSFYG 213 (337)
Q Consensus 199 ~ImsYsaKfaS~fYg 213 (337)
.| .++----|-|||
T Consensus 209 nI-GHaiI~esl~~G 222 (234)
T cd00003 209 NI-GHAIISRALFVG 222 (234)
T ss_pred EC-CHHHHHHHHHHH
T ss_conf 55-799999999974
No 175
>KOG2804 consensus
Probab=53.88 E-value=11 Score=18.99 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 9999999997301447986133271001
Q gi|255764463|r 110 INEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 110 v~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
..|++...|+.||+..+|.-||=|+-|-
T Consensus 79 HarqL~QaK~~FPNvyLiVGvc~De~Th 106 (348)
T KOG2804 79 HARQLEQAKKLFPNVYLIVGVCSDELTH 106 (348)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCHHHH
T ss_conf 7999999987388737998613733233
No 176
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=53.27 E-value=20 Score=17.38 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999999998889367633
Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIF 88 (337)
Q Consensus 69 ~L~~eie~~~~lGI~av~LF 88 (337)
.+.+.++.+.+.|-.+|=|.
T Consensus 15 p~~e~i~~aa~aGfdgVEl~ 34 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred CHHHHHHHHHHHCCCEEEEC
T ss_conf 99999999998199999877
No 177
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.25 E-value=20 Score=17.36 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCCCEEEECCC----H-HHHHHHHHHHHHCCCCEEEEE--CC--HHHHHHHHHHH-CCCCCHHH
Q ss_conf 08987995531----1-458999999962499899993--46--18999999998-88978899
Q gi|255764463|r 252 ESADMLLVKPG----L-PYLDVCFRIKEKFGLPTFAYQ--VS--GEYAMIKAASL-QGWINKND 305 (337)
Q Consensus 252 EGAD~lMVKPa----~-~yLDii~~~k~~~~~P~~aYq--VS--GEYami~~a~~-~g~~d~~~ 305 (337)
..+|++.+||+ + ..+.+ ..+.+..++|+..-. -| |-.|+++.|+. ..++|++.
T Consensus 250 ~a~d~v~~k~~~~GGit~~~~i-a~~A~~~gi~~~~g~~~es~i~~aA~~hlaaa~~~f~dldg 312 (316)
T cd03319 250 GAYDGINIKLMKTGGLTEALRI-ADLARAAGLKVMVGCMVESSLSIAAAAHLAAAKADFVDLDG 312 (316)
T ss_pred CCCCEEEECCHHHCCHHHHHHH-HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf 9988698451440898999999-99999869949981885469999999999830899896256
No 178
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=53.20 E-value=1.3 Score=25.39 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 4888786328899999----999999988893676330256334554454215765379999999997301447986133
Q gi|255764463|r 56 INSMPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 56 I~SMPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc 131 (337)
+...=|+.|-..|... +...++++.|.-.=-+.|+ . ...|+ ...++.-+.+.+..+|-.|.+-+.+|
T Consensus 140 vA~~~~isRe~qDe~A~~Sh~rA~~A~~~G~f~~EIvPv-~-~~~de----~~~~~~~~e~ll~~l~P~f~~~GtvT--- 210 (361)
T PRK06690 140 VAERYNITREMQDEYACLSYKRTLQALEKGYIHEEILSF-N-GLLDE----SIKKEMNYERIIKRTKPAFLHNGTVT--- 210 (361)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C-CCCCC----CCCCCCCHHHHHHCCCCCCCCCCCEE---
T ss_conf 999849799999999999899999998749852113766-6-51256----67899877988632898536788443---
Q ss_pred CCHHHCCCCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEE
Q ss_conf 2710011431001365----44628999999999----99999628973524667677999999999877885--77300
Q gi|255764463|r 132 LDPFTIHGHDGILCDG----EIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIM 201 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g----~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~Im 201 (337)
.|.+--+.|| .+-+.+..+.|.-. =+.++.+|+| |+.|.-|-|.||+++|+.+|.+ |+-+.
T Consensus 211 ------AgNsS~~sDGAAavll~se~~A~~~gl~p~ariv~~a~~g~~---P~~m~~~Pi~A~~~~L~~agl~~~Did~~ 281 (361)
T PRK06690 211 ------AGNSCGVNDGACAVLVMEEGQARKLGYKPVLRFVRSAVVGVD---PNLPGTGPIFAVNKLLNEMNMKVEDIDYF 281 (361)
T ss_pred ------CCCCCCCCCHHHHHHHHCHHHHHHCCCCCEEEEEEEEEEEEC---HHHCCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf ------421673000789999857999997799806999867899748---35548256999999999759971226511
Q ss_pred CHHHHHHHH
Q ss_conf 336664354
Q gi|255764463|r 202 PYVAKFNSS 210 (337)
Q Consensus 202 sYsaKfaS~ 210 (337)
----=||+.
T Consensus 282 EinEAFA~q 290 (361)
T PRK06690 282 EINEAFASK 290 (361)
T ss_pred EEHHHHHHH
T ss_conf 202677888
No 179
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=52.99 E-value=7.6 Score=20.17 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCCC--CCEECHH
Q ss_conf 999999998778857--7300336
Q gi|255764463|r 183 VQEIRKKLDSHGHIN--VGIMPYV 204 (337)
Q Consensus 183 V~aIR~~Ld~~g~~~--~~ImsYs 204 (337)
+.+||..||.+||.+ ||||+=|
T Consensus 158 ~~~~Rn~l~~~gFleiETP~LtKs 181 (653)
T TIGR00459 158 TKAVRNFLDQQGFLEIETPILTKS 181 (653)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 999986664278706506777788
No 180
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.63 E-value=18 Score=17.63 Aligned_cols=71 Identities=27% Similarity=0.257 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEECCCCCHHHCCCC
Q ss_conf 2889999999999998889367633025633455445421576537999999999730---1447986133271001143
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---PNIGIITDVALDPFTIHGH 140 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---pdl~vi~DVcLc~YT~hGH 140 (337)
-.+.+..++.++-+++-||+.+=+=- .++. --.+|+.++++| |++.|
T Consensus 21 ~~~~~~a~~~~~al~~gGi~~iEITl------~tp~----------a~~~i~~l~~~~~~~p~~~i-------------- 70 (209)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTY------TNPF----------ASEVIKELVERYKDDPEVLI-------------- 70 (209)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC------CCCC----------HHHHHHHHHHHHCCCCCEEE--------------
T ss_conf 28999999999999987998899967------8975----------99999999998177998189--------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EC
Q ss_conf 100136544628999999999999996289735-24
Q gi|255764463|r 141 DGILCDGEIVNDETIELISHAAVIQADAGADII-AP 175 (337)
Q Consensus 141 cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-AP 175 (337)
.=|-|.+-+ |+-...+|||+++ .|
T Consensus 71 ----GaGTV~~~e-------~~~~a~~aGA~FiVSP 95 (209)
T PRK06552 71 ----GAGTVLDAV-------TARQAILAGAQFIVSP 95 (209)
T ss_pred ----EEECCCCHH-------HHHHHHHCCCCEEECC
T ss_conf ----887274899-------9999998599889769
No 181
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=52.57 E-value=20 Score=17.29 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEE------------ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 999999999998889367633------------02563345544542157653799999999973014479861332710
Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIF------------PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF 135 (337)
Q Consensus 68 d~L~~eie~~~~lGI~av~LF------------p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y 135 (337)
+..++.++.+.+.|.-.|-|- |.. ++-+|+.|-.--|---|+...|++||+.+|.-.| .|=|.|.
T Consensus 152 ~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~-N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i--~vRlSp~ 228 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGS-NKRTDEYGGSIENRARFLLEVVDAVAEAIGADRV--GIRLSPF 228 (338)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE--EEEECCC
T ss_conf 999999999998399999982244068998538532-6898978999899989999999999997298708--9996576
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf 01143100136544628999999999999996289735246676779999999998778857730033666435430101
Q gi|255764463|r 136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY 215 (337)
Q Consensus 136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF 215 (337)
.. ..|+ .-+.+.+.....+..+.++|.|+|--|. |. +. ...-.+...+..++
T Consensus 229 ~~--~~g~------~~~~~~~~~~~~~~~l~~~gid~~~v~~---~~------------~~-----~~~~~~~~~~~~~i 280 (338)
T cd02933 229 GT--FNDM------GDSDPEATFSYLAKELNKRGLAYLHLVE---PR------------VA-----GNPEDQPPDFLDFL 280 (338)
T ss_pred CC--CCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEEC---CC------------CC-----CCCCCCCHHHHHHH
T ss_conf 67--6887------8887799999999999985998899726---87------------77-----77777657799999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEE-EECCCHHHHHHHHHHHHHC
Q ss_conf 67531024467777443157211478898888766408-9879-9553114589999999624
Q gi|255764463|r 216 RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES-ADML-LVKPGLPYLDVCFRIKEKF 276 (337)
Q Consensus 216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG-AD~l-MVKPa~~yLDii~~~k~~~ 276 (337)
|.+++. |-...-+ ++|. .++.-+++| ||++ |-.|-+.-=|.++++++.-
T Consensus 281 r~~~~~-pvi~~G~----i~~~-------~ae~~l~~G~~D~V~~gR~liaDP~~~~K~~~G~ 331 (338)
T cd02933 281 RKAFKG-PLIAAGG----YDAE-------SAEAALADGKADLVAFGRPFIANPDLVERLKNGA 331 (338)
T ss_pred HHHCCC-CEEEECC----CCHH-------HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCC
T ss_conf 998699-7999699----8999-------9999998799603685299987913999996399
No 182
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=52.20 E-value=21 Score=17.25 Aligned_cols=148 Identities=23% Similarity=0.276 Sum_probs=73.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEC-CC-CCHHHCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 542157653799999999973014479861-33-2710011431--0013654462899999999999999628973524
Q gi|255764463|r 100 GSHIIDPDNLINEGICAIKKNIPNIGIITD-VA-LDPFTIHGHD--GILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 100 GseA~n~dglv~rAIr~IK~~fpdl~vi~D-Vc-Lc~YT~hGHc--Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
..-++|.++.+.+|-+.++- |.+.+|=.| || ==|-|-.|-. -.+...-|.--.|+---..||+.-|+|||-.|+|
T Consensus 97 arls~d~~~~i~~A~~li~l-y~~~gi~~~rilIKipaTweGi~A~~~Le~~GI~~n~TlvFs~~QA~aaa~Ag~~~IsP 175 (313)
T cd00957 97 ARLSFDTNATIAKARKLIKL-YEEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISP 175 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEECC
T ss_conf 10214858899999999999-99719984545785588788999999999749854367764799999999769879886
Q ss_pred CCCCCCHHHHHHHHHHH----CCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC--CCCHHHHHHHHHHHH
Q ss_conf 66767799999999987----788577300336664354301016753102446777744315--721147889888876
Q gi|255764463|r 176 SEMMDGRVQEIRKKLDS----HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYL--DPANVQEAIREASID 249 (337)
Q Consensus 176 SdMMDGrV~aIR~~Ld~----~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQm--d~~n~~eA~~e~~~D 249 (337)
.=|||.-.-+.-.. ..-.|-++.| ...-|-=|+. + | -+|-=| -++|..|-+ +
T Consensus 176 ---fVGRi~DWyk~~~~~~~~~~~~DPGv~~-----v~~Iy~yyk~-------~-g-~~T~Vm~ASfRn~~ei~-~---- 233 (313)
T cd00957 176 ---FVGRILDWYKKHSGDKAYTAEEDPGVAS-----VKKIYNYYKK-------F-G-YKTKVMGASFRNIGQIL-A---- 233 (313)
T ss_pred ---CCCHHHHHHHHCCCCCCCCCCCCCHHHH-----HHHHHHHHHH-------C-C-CCEEEEEEECCCHHHHH-H----
T ss_conf ---5231778988325765577777950799-----9999999997-------6-9-97078531027799999-8----
Q ss_pred HHCCCCEEEECCCHHHHHHHHHHHHHC
Q ss_conf 640898799553114589999999624
Q gi|255764463|r 250 IQESADMLLVKPGLPYLDVCFRIKEKF 276 (337)
Q Consensus 250 ~~EGAD~lMVKPa~~yLDii~~~k~~~ 276 (337)
--|.|.+-+-|.+ +.++++..
T Consensus 234 -LaGcD~lTisP~L-----L~~L~~~~ 254 (313)
T cd00957 234 -LAGCDYLTISPAL-----LEELKNST 254 (313)
T ss_pred -HHCCCEEECCHHH-----HHHHHCCC
T ss_conf -7378824139999-----99987176
No 183
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=51.84 E-value=12 Score=18.72 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=17.4
Q ss_pred HHCCCCEEEC-CCCCCCHHHHHHHHHHHCC
Q ss_conf 9628973524-6676779999999998778
Q gi|255764463|r 166 ADAGADIIAP-SEMMDGRVQEIRKKLDSHG 194 (337)
Q Consensus 166 A~AGaDivAP-SdMMDGrV~aIR~~Ld~~g 194 (337)
.++||+-.-+ +.-.+--+.+||.+....-
T Consensus 92 ~~~Ga~g~l~K~~~~~~l~~aI~~v~~G~~ 121 (204)
T PRK09958 92 ADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 (204)
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 526863799789999999999999977997
No 184
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=51.05 E-value=11 Score=19.02 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=50.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-----CCCCC------CHHHHHHHHHHHHHCCCEE--E
Q ss_conf 863288999999999999888936763302563345544542-----15765------3799999999973014479--8
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSH-----IIDPD------NLINEGICAIKKNIPNIGI--I 127 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gse-----A~n~d------glv~rAIr~IK~~fpdl~v--i 127 (337)
|+..-.+|..++.+++..++ | ++|||+=-+.+ +..+.. =+|.+ |---++-..|++..|.|-+ +
T Consensus 37 Gi~e~~ld~~v~~ik~~~~~--p-~iLFPG~~~~L-s~~ADAvlFmSlLNS~d~yfivGaqi~aA~~i~~~~PrlE~Ip~ 112 (212)
T TIGR01769 37 GISEDKLDQVVKKIKEITNL--P-VILFPGSVNLL-SRKADAVLFMSLLNSADTYFIVGAQIKAAVLIKKLQPRLEVIPT 112 (212)
T ss_pred CCCHHHHHHHHHHHHHCCCC--C-EEECCCCHHHH-HHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCCE
T ss_conf 73354788999986401578--6-68827884578-88865988888653699736741515789999872788563652
Q ss_pred ECCCCCHHH--CCCCCCCCCCCCCCHHHHHHHHHHH------HHHHHHCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 613327100--1143100136544628999999999------9999962897352466767799999999
Q gi|255764463|r 128 TDVALDPFT--IHGHDGILCDGEIVNDETIELISHA------AVIQADAGADIIAPSEMMDGRVQEIRKK 189 (337)
Q Consensus 128 ~DVcLc~YT--~hGHcGi~~~g~IdND~Tl~~L~k~------Al~~A~AGaDivAPSdMMDGrV~aIR~~ 189 (337)
+=+|.-|=- +=||-|-.+.=.-+|-++-..++-. ...|-|||.= ||.=--.-.|..+|+.
T Consensus 113 AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGSG--As~Pv~~e~i~~~k~~ 180 (212)
T TIGR01769 113 AYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGSG--ASEPVSPETISLVKKK 180 (212)
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHH
T ss_conf 2688758874044652001258998666899999999874135121310578--6667866799999985
No 185
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=50.64 E-value=22 Score=17.09 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC--------CHHHHHHHHHHHHHCC----CCEEEEECCHHHH
Q ss_conf 446777744315721147889888876640898799553--------1145899999996249----9899993461899
Q gi|255764463|r 223 DLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKP--------GLPYLDVCFRIKEKFG----LPTFAYQVSGEYA 290 (337)
Q Consensus 223 p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP--------a~~yLDii~~~k~~~~----~P~~aYqVSGEYa 290 (337)
|-...=|--.-.+-.|..|+-|-++ ++||-+|-|-+ |-.-.|.|+++|+... +||++
T Consensus 145 PVTVK~R~GWD~~h~n~~~~a~~a~---~~Ga~Av~lHGRTRaQ~Y~G~A~wd~I~~vKq~v~~~GeiPVig-------- 213 (336)
T TIGR00737 145 PVTVKIRIGWDDAHINAVEAARIAE---DAGAQAVTLHGRTRAQGYEGEANWDIIARVKQAVRKEGEIPVIG-------- 213 (336)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHH---HCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEC--------
T ss_conf 5166551563624488899999998---72400021110000015788760689999999971687533222--------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE----ECHHHHHH
Q ss_conf 999999888978899999999999772699998----20189999
Q gi|255764463|r 291 MIKAASLQGWINKNDAMMESLLAFKRAGCDGIF----TYFAMEAA 331 (337)
Q Consensus 291 mi~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii----tY~A~~~a 331 (337)
||=+. ....+...+.+.|||.|. +++.|.+-
T Consensus 214 -------NGDi~---~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~ 248 (336)
T TIGR00737 214 -------NGDIF---SPEDAKAMLETTGADGVMIGRGALGNPWLF 248 (336)
T ss_pred -------CCCCC---CHHHHHHHHHHCCCCEEEEECHHCCCCHHH
T ss_conf -------77424---678999998637886898500222787589
No 186
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=50.55 E-value=22 Score=17.08 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCCEEEEE------------ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHH
Q ss_conf 9999999998889367633------------0256334554454215765379999999997301-44798613327100
Q gi|255764463|r 70 AVEKIKQVADLGIPAIAIF------------PNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFT 136 (337)
Q Consensus 70 L~~eie~~~~lGI~av~LF------------p~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT 136 (337)
-.+..+.+.+.|-..|-|. |.. +.-+|+.|-.--|---+.-..++++++..| ++-+..-+.--.|.
T Consensus 558 F~~AA~rA~~AGFD~IEiH~AHGYLl~qFLSPls-N~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~vRiSatDw~ 636 (770)
T PRK08255 558 FVAATRRAAEAGFDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMSVRISAHDWV 636 (770)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 9999999998399989995234555887538644-677543578888777889999999998678988669998510256
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 11431001365446289999999999999962897352466
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSE 177 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd 177 (337)
..| -|++--.++|..+.++|+|+|--|.
T Consensus 637 ~gG-------------~t~edsv~la~~l~~~GvD~IdvSs 664 (770)
T PRK08255 637 EGG-------------NTPDDAVEIARAFKAAGADMIDVSS 664 (770)
T ss_pred CCC-------------CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 899-------------9999999999999974998999578
No 187
>KOG2648 consensus
Probab=50.17 E-value=22 Score=17.04 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=75.5
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEE
Q ss_conf 589881104888786328899999999999988893676330256334554454215765379999999997301-4479
Q gi|255764463|r 48 SGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGI 126 (337)
Q Consensus 48 eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~v 126 (337)
......+.++.+|..+.| ++-+.+..+.+.|-+.|+|= .-+.-+++. +...+.+++.++ +..|
T Consensus 19 ~~~~l~~~~~~lp~~~~f---Ei~ktv~~Ir~~~~kRVALQ-fPD~LL~~S------------~~I~~ile~~~~~k~~V 82 (453)
T KOG2648 19 REKELPEALKLLPSNYNF---EIHKTVWFIRSLGAKRVALQ-FPDGLLMYS------------CKISDILESFTGAKTFV 82 (453)
T ss_pred HCCCCHHHHCCCCHHCCH---HHHHHHHHHHHCCCEEEEEE-CCHHHHHHH------------HHHHHHHHHHCCCCEEE
T ss_conf 163320332335220130---04667889985885079985-876776677------------99999999752663799
Q ss_pred EECC-----CCCHHHC-C---------CCCCCCC-C-----------CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC-
Q ss_conf 8613-----3271001-1---------4310013-6-----------54462899999999999999628973524667-
Q gi|255764463|r 127 ITDV-----ALDPFTI-H---------GHDGILC-D-----------GEIVNDETIELISHAAVIQADAGADIIAPSEM- 178 (337)
Q Consensus 127 i~DV-----cLc~YT~-h---------GHcGi~~-~-----------g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdM- 178 (337)
+.|| |.|++|- | ||-++.- + =.||-+.-++.|.... .+.-..|+--++-
T Consensus 83 LaDttYGsCCVDevaA~h~~ad~lVHyG~aCLsp~~~~~~~lYVf~~i~Idl~~~~~~l~~~~---~~~~~~I~l~~~i~ 159 (453)
T KOG2648 83 LGDTTYGSCCVDEVAAEHLDADALVHYGHACLSPIDRLPVVLYVFVDIPIDLDHLVKSLQRNF---PQLISQIVLLGTIQ 159 (453)
T ss_pred EECCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCCEEEEEECCC
T ss_conf 815754652114677863588779870640038623477238996025536999999998746---65455169972200
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEECHHHH
Q ss_conf 6779999999998778857730033666
Q gi|255764463|r 179 MDGRVQEIRKKLDSHGHINVGIMPYVAK 206 (337)
Q Consensus 179 MDGrV~aIR~~Ld~~g~~~~~ImsYsaK 206 (337)
--..+.++++.|...+.. .-+..=+.|
T Consensus 160 f~~~l~~~~~~L~~~~~~-~~~i~Pq~~ 186 (453)
T KOG2648 160 FAHSLEALATELKEELLD-LEVILPQFK 186 (453)
T ss_pred HHHHHHHHHHHHHHCCCC-EEEECCCCC
T ss_conf 177999999997530476-177326788
No 188
>PRK05826 pyruvate kinase; Provisional
Probab=49.51 E-value=23 Score=16.98 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.6
Q ss_pred HHHCCCCEEECCCCCCCH-HHHHHHHHHHCCCCCCCEECH
Q ss_conf 996289735246676779-999999998778857730033
Q gi|255764463|r 165 QADAGADIIAPSEMMDGR-VQEIRKKLDSHGHINVGIMPY 203 (337)
Q Consensus 165 ~A~AGaDivAPSdMMDGr-V~aIR~~Ld~~g~~~~~ImsY 203 (337)
-.+.|+|+||-|=--... |..+|+.|+++|..++.|.|=
T Consensus 182 a~~~~vD~ialSFVrsa~DV~~lr~~l~~~~~~~~~IIaK 221 (461)
T PRK05826 182 AAEQGVDYIAVSFVRNAEDVEEARRLLREAGNCDAKIIAK 221 (461)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9976999997468898678999999999729998448998
No 189
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=49.09 E-value=23 Score=16.93 Aligned_cols=133 Identities=26% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf 116667589881104888786328899999999999----98889367633025633455445421576537--999999
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQV----ADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--INEGIC 115 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~----~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--v~rAIr 115 (337)
.|+++.-|.++-| |.|.+.+.++++ .++||+ .+| +-.=+|-+-..-++|.--|+ =-+...
T Consensus 16 ~~f~LiaGpcviE-----------s~d~a~~~a~~l~~~t~~lgi~--~vf-KsSfDKANRsSi~s~RGpGLeeglki~~ 81 (279)
T COG2877 16 LPFVLIAGPCVIE-----------SRDLALEIAEHLKELTEKLGIP--YVF-KSSFDKANRSSIHSYRGPGLEEGLKILQ 81 (279)
T ss_pred CCEEEEECCHHHC-----------HHHHHHHHHHHHHHHHHCCCCC--EEE-ECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8537971442001-----------0788999999999998603985--698-6243423333211246877888999999
Q ss_pred HHHHHHCCCEEEECCCCCHHHCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHCCC-------CEEECCCCCCCHHHHH
Q ss_conf 9997301447986133271001143100136--544628999999999999996289-------7352466767799999
Q gi|255764463|r 116 AIKKNIPNIGIITDVALDPFTIHGHDGILCD--GEIVNDETIELISHAAVIQADAGA-------DIIAPSEMMDGRVQEI 186 (337)
Q Consensus 116 ~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~--g~IdND~Tl~~L~k~Al~~A~AGa-------DivAPSdMMDGrV~aI 186 (337)
++|++| .+-|+|||- +.-+|-.+.+ +.|-..+-|-+-...-+.-|+.|+ ..++|.||- .|
T Consensus 82 ~vK~ef-gv~ilTDVH-----e~~q~~~vA~VvDilQiPAFL~RQTDLlvA~AkTg~~vNvKKgQFLaPwdMk-----ni 150 (279)
T COG2877 82 EVKEEF-GVPILTDVH-----EPSQAQPVAEVVDVLQIPAFLCRQTDLLVAAAKTGAVVNVKKGQFLAPWDMK-----NI 150 (279)
T ss_pred HHHHHC-CCCEEECCC-----CHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHH-----HH
T ss_conf 999871-996341358-----8665314775500221308876307999999975884761265515866755-----59
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 9999877885773
Q gi|255764463|r 187 RKKLDSHGHINVG 199 (337)
Q Consensus 187 R~~Ld~~g~~~~~ 199 (337)
-....+.|..++.
T Consensus 151 v~K~~~~gn~~v~ 163 (279)
T COG2877 151 VEKFLETGNNKVI 163 (279)
T ss_pred HHHHHHCCCCCEE
T ss_conf 9999853898679
No 190
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.69 E-value=23 Score=16.89 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=43.0
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECC
Q ss_conf 04888786328899999999999988893676330256334554454215765379999999997301-44798613
Q gi|255764463|r 55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDV 130 (337)
Q Consensus 55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DV 130 (337)
+|+...-+-.-+.+...++++++.+.|.+.+-+--+.+.-.+| ...|+++++.++ ++-++.|.
T Consensus 130 ~v~~~~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvG~~~~~~D-------------~~~v~~ir~~~g~~~~l~vDa 193 (355)
T cd03321 130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADED-------------LAVVRSIRQAVGDGVGLMVDY 193 (355)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-------------HHHHHHHHHHHCCCCEEEECC
T ss_conf 5025623678999999999999997599989997999998999-------------999999999719996597357
No 191
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.44 E-value=23 Score=16.87 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=49.2
Q ss_pred HCCCCEEEECCCCCEEECCCCCC-------CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 73311666758988110488878-------63288999999999999888936763302563345544542157653799
Q gi|255764463|r 39 DLILPIFLTSGEKTVESINSMPD-------VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLIN 111 (337)
Q Consensus 39 dLI~PiFV~eg~~~k~~I~SMPG-------v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~ 111 (337)
-+=+|+.--=|- .++.|+.--. .-..+.+.+.+++++..+.|.++|-+-+..+...+ . -.
T Consensus 110 ~~g~Pv~~LLGG-~r~~vp~Y~s~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~~~~~~~~---------~---d~ 176 (368)
T cd03329 110 YLGLPVHRLLGG-YREKIPAYASTMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWGPGVVR---------R---DL 176 (368)
T ss_pred HCCCCHHHHHCC-CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHH---------H---HH
T ss_conf 849979998389-8776312688713665344589999999999999769989986589897689---------9---99
Q ss_pred HHHHHHHHHHC-CCEEEECC
Q ss_conf 99999997301-44798613
Q gi|255764463|r 112 EGICAIKKNIP-NIGIITDV 130 (337)
Q Consensus 112 rAIr~IK~~fp-dl~vi~DV 130 (337)
+.++++++.++ |+.++.|.
T Consensus 177 ~~v~avReavG~d~~l~vDa 196 (368)
T cd03329 177 KACLAVREAVGPDMRLMHDG 196 (368)
T ss_pred HHHHHHHHHHCCCEEEEECC
T ss_conf 99999999738970898768
No 192
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=48.42 E-value=14 Score=18.32 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=8.9
Q ss_pred HHHHHHHHHHCCCCCCCEE
Q ss_conf 9999999987788577300
Q gi|255764463|r 183 VQEIRKKLDSHGHINVGIM 201 (337)
Q Consensus 183 V~aIR~~Ld~~g~~~~~Im 201 (337)
+..+|+.||.+||.++.|+
T Consensus 231 ~~~vR~~LD~~G~~~vkI~ 249 (302)
T cd01571 231 IREVRWALDIRGYKHVKIF 249 (302)
T ss_pred HHHHHHHHHHCCCCCCEEE
T ss_conf 9999999976698874899
No 193
>PRK10403 transcriptional regulator NarP; Provisional
Probab=48.19 E-value=24 Score=16.84 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHCCCCE-EECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9628973-524667677999999999877885
Q gi|255764463|r 166 ADAGADI-IAPSEMMDGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 166 A~AGaDi-vAPSdMMDGrV~aIR~~Ld~~g~~ 196 (337)
.++||+- +.-+.-.+--+.+||..+....+.
T Consensus 99 l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~ 130 (215)
T PRK10403 99 IDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF 130 (215)
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 74687668848999999999999998499847
No 194
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=48.18 E-value=24 Score=16.84 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=67.1
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCC
Q ss_conf 1048887863288999999999999888936763302563345544542157653799999999973014-479861332
Q gi|255764463|r 54 ESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVAL 132 (337)
Q Consensus 54 ~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcL 132 (337)
++|.-|...-| +...+...+..+..+||++|+.--+=++..-|....... ...-...-|+.||..+++ +.+ +.
T Consensus 71 ~~i~Hltcrd~-n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~~~-~~~~a~~Li~~i~~~~~~~f~i----gv 144 (286)
T pfam02219 71 EACMHLTCTDM-NKEELDDALEDAKALGIRNILALRGDPPKGGDHWEKPEG-GFKYALDLVRLIRQEYGDYFDI----GV 144 (286)
T ss_pred CEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCC----CC
T ss_conf 82267464779-899999999999985988587614889887777789986-6333999999999735987775----54
Q ss_pred CHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHCCC
Q ss_conf 710011431001365446289999999999999962897352466767-799999999987788
Q gi|255764463|r 133 DPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD-GRVQEIRKKLDSHGH 195 (337)
Q Consensus 133 c~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD-GrV~aIR~~Ld~~g~ 195 (337)
-.| ..||..- -+-+.-++.|.+ -.+||||.+---=-.| -.....++.+.+.|.
T Consensus 145 a~y-Pe~hp~a-----~~~~~di~~L~~----Ki~aGA~f~iTQ~~fd~~~~~~f~~~~~~~Gi 198 (286)
T pfam02219 145 AAY-PEGHPEA-----KSWQADLKYLKE----KVDAGADFIITQLFFDVDNFLRFVDRCRAAGI 198 (286)
T ss_pred CCC-CCCCCCC-----CCHHHHHHHHHH----HHHCCCHHHHHHHEECHHHHHHHHHHHHHCCC
T ss_conf 558-8778651-----219999999999----99846105364353249999999999997499
No 195
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=48.05 E-value=24 Score=16.83 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEC
Q ss_conf 999999999977269999820
Q gi|255764463|r 305 DAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 305 ~~~~E~l~~~kRAGAd~IitY 325 (337)
+..-+-+..++..|||+++|=
T Consensus 438 ~I~~~K~~~I~~TGAd~VvT~ 458 (491)
T PRK06259 438 ALGKRKAEMIYETGADYVITV 458 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999998695999963
No 196
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=47.92 E-value=20 Score=17.33 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=28.6
Q ss_pred HHHHHHHCCCC-------EEEECCCHHHH--HHH-HHHHHHCCCCEE
Q ss_conf 88876640898-------79955311458--999-999962499899
Q gi|255764463|r 245 EASIDIQESAD-------MLLVKPGLPYL--DVC-FRIKEKFGLPTF 281 (337)
Q Consensus 245 e~~~D~~EGAD-------~lMVKPa~~yL--Dii-~~~k~~~~~P~~ 281 (337)
--.+-..|||| |+|-||.-||+ |-| +..-+.+.+||.
T Consensus 48 ~k~lk~~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 48 IKQLKGKEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred HHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 99875124634366242036158999844799999999998199589
No 197
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=47.80 E-value=2.9 Score=22.99 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=15.8
Q ss_pred EECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 52466767799999999987788
Q gi|255764463|r 173 IAPSEMMDGRVQEIRKKLDSHGH 195 (337)
Q Consensus 173 vAPSdMMDGrV~aIR~~Ld~~g~ 195 (337)
+.|+.|..|-+.|++++|+..|.
T Consensus 285 ~~p~~~~~~p~~A~~~al~~agl 307 (394)
T PRK06445 285 VPPSIMGMGPVPASRKALEKAGL 307 (394)
T ss_pred CCHHHCCCCHHHHHHHHHHHCCC
T ss_conf 38777085889999999997399
No 198
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=47.52 E-value=24 Score=16.77 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=41.8
Q ss_pred CEEEECCCCCEE---ECCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 166675898811---0488878632-8899999999999988893676330256334554454215
Q gi|255764463|r 43 PIFLTSGEKTVE---SINSMPDVMR-MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHII 104 (337)
Q Consensus 43 PiFV~eg~~~k~---~I~SMPGv~R-~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~ 104 (337)
=|=|-||-|..= .||||-|-.| -+++.+++|++.+++.|+|=++|-- ++ -+..|-.=+
T Consensus 167 YlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvKEiilia---QD-Tt~YG~DL~ 228 (475)
T TIGR01125 167 YLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVKEIILIA---QD-TTAYGVDLY 228 (475)
T ss_pred EEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE---EE-CCCCCCEEE
T ss_conf 687005778986521362336776776888899999999843983899996---40-347764111
No 199
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=47.52 E-value=15 Score=18.18 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCC
Q ss_conf 99999998889367633025633455445421576537-9999999997301-447986133271001143100136544
Q gi|255764463|r 72 EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL-INEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEI 149 (337)
Q Consensus 72 ~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl-v~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~I 149 (337)
..++++.++|-..|.=||-+. .=|-.=...+.+.|+ ..+-|..|+..-. ||.-+ || +
T Consensus 99 ~~L~~l~~~GfsGV~NfPTvg--lidG~fR~~LEetGmgy~~EVEmIr~A~~~dl~T~------~y-------------v 157 (268)
T pfam09370 99 RFLDELKEMGFAGVQNFPTVG--LIDGEFRQNLEETGMGYDLEVEMIRLAHEKGLLTT------PY-------------V 157 (268)
T ss_pred HHHHHHHHHCCCCEEECCCEE--EECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC------CE-------------E
T ss_conf 999999971977444388220--33518887788808867999999999997798333------13-------------2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 628999999999999996289735246
Q gi|255764463|r 150 VNDETIELISHAAVIQADAGADIIAPS 176 (337)
Q Consensus 150 dND~Tl~~L~k~Al~~A~AGaDivAPS 176 (337)
-| .+||..-|+||||||+|-
T Consensus 158 f~-------~e~a~~Ma~AGaDiIv~H 177 (268)
T pfam09370 158 FN-------VEEARAMAEAGADIIVAH 177 (268)
T ss_pred CC-------HHHHHHHHHCCCCEEEEC
T ss_conf 68-------999999997499899976
No 200
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=47.26 E-value=5.5 Score=21.13 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHC-----CCEEEECCC--CCHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 79999999997301-----447986133--27100114310013--6544628999999999999996289735246676
Q gi|255764463|r 109 LINEGICAIKKNIP-----NIGIITDVA--LDPFTIHGHDGILC--DGEIVNDETIELISHAAVIQADAGADIIAPSEMM 179 (337)
Q Consensus 109 lv~rAIr~IK~~fp-----dl~vi~DVc--Lc~YT~hGHcGi~~--~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMM 179 (337)
-+--|++.||..-+ .+.||.--| +.-=-.-||-+++- |=-|.-+.|=+.|+++|+.-|+.--++.-+
T Consensus 118 tlRpaLqiI~T~~Gvk~vSSvFiM~~~~~~~nvdfC~G~~~~l~F~DCAv~~~P~a~~LAeIA~~sA~sak~f~~~---- 193 (322)
T TIGR00651 118 TLRPALQIIKTLPGVKIVSSVFIMDTNETALNVDFCFGTREVLVFADCAVNVDPNAEQLAEIAIQSAKSAKSFGEI---- 193 (322)
T ss_pred HCCHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 4042566520378850687778865888621010025744126885124502988789999999999999984689----
Q ss_pred CCHHHHHHHHHHHCCCCCCCEECHHHHHHH
Q ss_conf 779999999998778857730033666435
Q gi|255764463|r 180 DGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 (337)
Q Consensus 180 DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS 209 (337)
-..|..||||+|=++
T Consensus 194 ---------------epkVAlLSYST~gSg 208 (322)
T TIGR00651 194 ---------------EPKVALLSYSTKGSG 208 (322)
T ss_pred ---------------CCEEEEEEECCCCCC
T ss_conf ---------------960899830245565
No 201
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=47.22 E-value=24 Score=16.74 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=86.8
Q ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 888786328-----899999999999988893676330256334554454215765379999999997301447986133
Q gi|255764463|r 57 NSMPDVMRM-----SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 57 ~SMPGv~R~-----Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVc 131 (337)
+.|+|+|-. ..+.+++.++++++.||+.|-|= + |+.. +.-..+.++.+++....
T Consensus 4 ~~~~glYlIT~~~~~~~~~~~~~~~~l~~Gv~~vQlR-----~-K~~~-------~~~~~~~a~~l~~i~~~-------- 62 (210)
T PRK00043 4 MKLLGLYLITDSRDSTGDLLEVVEAALAGGVTLVQLR-----E-KGAD-------ARERLELARALKALCRR-------- 62 (210)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC-----C-CCCC-------HHHHHHHHHHHHHHHHH--------
T ss_conf 5308089991985345549999999998699999992-----6-9989-------99999999999999998--------
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE--ECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH
Q ss_conf 271001143100136544628999999999999996289735--246676779999999998778857730033666435
Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII--APSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv--APSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS 209 (337)
+|-. + |.||. + +.|.. .|+|.| ..+||. +..+|+.|..+. |.
T Consensus 63 ------~~~~-l-----iINd~-~----~lA~~---~~adGvHLgq~d~~---~~~~r~~l~~~~-----ii-------- 106 (210)
T PRK00043 63 ------YGVP-L-----IVNDR-V----DLALA---VGADGVHLGQDDLP---VADARAILGPDA-----II-------- 106 (210)
T ss_pred ------HCCE-E-----EECCH-H----HHHHH---HCCCEEECCCCCCC---HHHHHHHCCCCC-----EE--------
T ss_conf ------0995-9-----97688-9----99987---19998976988768---999997519887-----89--------
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--------CCC-HH--HHHHHHHHHHHCCC
Q ss_conf 43010167531024467777443157211478898888766408987995--------531-14--58999999962499
Q gi|255764463|r 210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV--------KPG-LP--YLDVCFRIKEKFGL 278 (337)
Q Consensus 210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV--------KPa-~~--yLDii~~~k~~~~~ 278 (337)
| ...+|..|+.. -..+|||++.+ ||+ .| -++.++.+++.+.+
T Consensus 107 -----------------G------~S~h~~~e~~~----A~~~gaDYi~~Gpvf~T~tK~~~~~~~g~~~l~~~~~~~~i 159 (210)
T PRK00043 107 -----------------G------VSTHTLEEAAA----AAAAGADYVGVGPIFPTPTKKDAKPAVGLELLREAREAIDI 159 (210)
T ss_pred -----------------E------EECCCHHHHHH----HHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf -----------------9------84799999999----98828983887452147988888777899999999984799
Q ss_pred CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 899993461899999999888978899999999999772699998
Q gi|255764463|r 279 PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 279 P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii 323 (337)
|+.|- |-++.+ .+..++.+||+.|-
T Consensus 160 PvvAI---------------GGI~~~-----ni~~~~~~Ga~giA 184 (210)
T PRK00043 160 PIVAI---------------GGITPE-----NAAEVLEAGADGVA 184 (210)
T ss_pred CEEEE---------------CCCCHH-----HHHHHHHCCCCEEE
T ss_conf 98998---------------088999-----99999980999999
No 202
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=46.81 E-value=25 Score=16.70 Aligned_cols=139 Identities=23% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCCEEEECCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 31166675898811048887863-28899999999999988893676330256334554454215765379999999997
Q gi|255764463|r 41 ILPIFLTSGEKTVESINSMPDVM-RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK 119 (337)
Q Consensus 41 I~PiFV~eg~~~k~~I~SMPGv~-R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~ 119 (337)
+.|-+|+=-++.++++.|=-|.. .-..+.|.+.++++.+.||+ |-|| |+++. ..|...|+
T Consensus 85 ~kP~qvtLVPe~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIr-vSLF--iDPd~----------------~~i~~a~~ 145 (240)
T PRK05265 85 IKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIR-VSLF--IDPDP----------------EQIEAAAE 145 (240)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE-EEEE--ECCCH----------------HHHHHHHH
T ss_conf 49985998889988626788937765789999999999865981-7997--27987----------------89999998
Q ss_pred HHCC-CEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 3014-479861332710011431001365446289999999999999962897352466767799999999987788577
Q gi|255764463|r 120 NIPN-IGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINV 198 (337)
Q Consensus 120 ~fpd-l~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~ 198 (337)
.-.| +-+.|- +|-.. .+.-..++.++.+.+.|..-.+.|-.+=|=-|.-=.-+..+.+ -.+...+
T Consensus 146 ~Gad~VElhTG----~Ya~a-------~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~---ip~i~Ev 211 (240)
T PRK05265 146 VGADRIELHTG----PYADA-------KTEAEQAAELERIAEAAALAASLGLGVNAGHGLNYHNVKPIAA---IPGIEEL 211 (240)
T ss_pred HCCCEEEEECH----HHHHH-------CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHC---CCCCEEE
T ss_conf 49399998347----87863-------5752199999999999999998698785378988777899844---8997488
Q ss_pred CEECHHHHHHHHHHC
Q ss_conf 300336664354301
Q gi|255764463|r 199 GIMPYVAKFNSSFYG 213 (337)
Q Consensus 199 ~ImsYsaKfaS~fYg 213 (337)
.| .++----|-|||
T Consensus 212 sI-GHaiI~eAl~~G 225 (240)
T PRK05265 212 NI-GHAIIARALFVG 225 (240)
T ss_pred EC-CHHHHHHHHHHH
T ss_conf 45-799999999974
No 203
>KOG3020 consensus
Probab=45.82 E-value=9.6 Score=19.49 Aligned_cols=18 Identities=6% Similarity=0.305 Sum_probs=8.6
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 999999988893676330
Q gi|255764463|r 72 EKIKQVADLGIPAIAIFP 89 (337)
Q Consensus 72 ~eie~~~~lGI~av~LFp 89 (337)
..++.+...|+..++.-+
T Consensus 36 ~v~~~a~~~~v~~~~v~g 53 (296)
T KOG3020 36 QVLERAVQAGVSKLIVTG 53 (296)
T ss_pred HHHHHHHHCCCEEEEEEC
T ss_conf 788888753633788717
No 204
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=45.19 E-value=26 Score=16.54 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 315721147889888876640898799553114589999999624998999934618999999
Q gi|255764463|r 232 YYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKA 294 (337)
Q Consensus 232 YQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~ 294 (337)
.|..+.+..|+-.-+..=.++|.+++ |=++ +.-++.++.++|- ..--||+-|.-.+
T Consensus 102 ~~~~~~~~~e~~~~i~~l~~~G~~vv-VG~~-----~~~~~A~~~Gl~~-vli~sg~eSI~~A 157 (169)
T pfam06506 102 VQRAYQSEEEARAAVKELKAQGIKVI-VGDG-----LVCDLAEQAGLQG-VLIYSGKESVREA 157 (169)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEE-ECCC-----HHHHHHHHCCCCE-EEEECCHHHHHHH
T ss_conf 99996688999999999998699599-8582-----8999999839957-9996678999999
No 205
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=45.13 E-value=26 Score=16.53 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=27.4
Q ss_pred HHHHHCCCCEEEECCCHHH----HHHHHHHHHHC--CCCEEEEEC
Q ss_conf 8766408987995531145----89999999624--998999934
Q gi|255764463|r 247 SIDIQESADMLLVKPGLPY----LDVCFRIKEKF--GLPTFAYQV 285 (337)
Q Consensus 247 ~~D~~EGAD~lMVKPa~~y----LDii~~~k~~~--~~P~~aYqV 285 (337)
..=++.|+|+|-|.-|--. +|.|+.+|+.+ .+|+.|=+|
T Consensus 248 ~~Lv~aGvD~lviD~AhGhs~~v~~~ik~ik~~~~~~~~i~aGNV 292 (497)
T PRK07107 248 PALVEAGADVLCIDSSDGYSEWQKRTLDYIKEKYGDTVKVGAGNV 292 (497)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 999985999998034353529999999999986698763414521
No 206
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.09 E-value=26 Score=16.53 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=47.1
Q ss_pred EEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHC
Q ss_conf 666758988110488878632889999999999998889367633025633455445421576537-9999999997301
Q gi|255764463|r 44 IFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL-INEGICAIKKNIP 122 (337)
Q Consensus 44 iFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl-v~rAIr~IK~~fp 122 (337)
.|+.-|.-+-| |.+.+...++.+.++|++ .+|+++-+. .+. -.+|.--|+ =.+-++.+|++|
T Consensus 16 ~~lIAGPC~iE-----------S~e~~~~~A~~lk~~g~~--~~r~~~~K~-RTs--~~sfrG~G~egL~~L~~vk~~~- 78 (250)
T PRK13397 16 NNFIVGPCSIE-----------SYDHIRLAASSAKKLGYN--YFRGGAYKP-RTS--AASFQGLGLQGIRYLHEVCQEF- 78 (250)
T ss_pred CCEEECCCHHC-----------CHHHHHHHHHHHHHCCCC--EEECCCCCC-CCC--CCCCCCCCHHHHHHHHHHHHHC-
T ss_conf 87885587330-----------999999999999984988--575362688-899--9776788888999999999983-
Q ss_pred CCEEEECCCCC
Q ss_conf 44798613327
Q gi|255764463|r 123 NIGIITDVALD 133 (337)
Q Consensus 123 dl~vi~DVcLc 133 (337)
++-|+|||.--
T Consensus 79 glpi~TdVh~~ 89 (250)
T PRK13397 79 GLLSVSEIMSE 89 (250)
T ss_pred CCCEEEECCCH
T ss_conf 99748847999
No 207
>PRK08234 consensus
Probab=44.95 E-value=26 Score=16.51 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=67.8
Q ss_pred CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 86328899999----999999988893676330256334554454215765-----379999999997301447986133
Q gi|255764463|r 61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-----NLINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-----glv~rAIr~IK~~fpdl~vi~DVc 131 (337)
|+.|-..|... +....+++.|.=.=-++|+.-+.+|.. ....+.| +.....+..+|-.|++ +.+
T Consensus 176 gIsReeqD~~A~~Sh~rA~~A~~~G~f~~EIvPv~~~~~~g~--~~~~~~De~~R~~tt~e~La~L~P~F~~-Gtv---- 248 (400)
T PRK08234 176 GITREAQDEFAYESQMRAKAAMETGRFDDELVPVVYPDRKGN--REVVDKDEHPRPDTTLEKLAKLPPLFEN-GTV---- 248 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEEECCCCC--EEECCCCCCCCCCCCHHHHHCCCCCCCC-CCC----
T ss_conf 989999999999999999999875984111566774046787--0211577775799871011006774313-665----
Q ss_pred CCHHHCCCCCCCCCCCC----CCHHHHHHHHHHHH----HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEE
Q ss_conf 27100114310013654----46289999999999----999962897352466767799999999987788--577300
Q gi|255764463|r 132 LDPFTIHGHDGILCDGE----IVNDETIELISHAA----VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIM 201 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g~----IdND~Tl~~L~k~A----l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~Im 201 (337)
+.|.|--+.||- +-+.+..+.|.-.. +.++.+|+| |+.|--|-|.+||++|+.+|. .|+-+.
T Consensus 249 -----TagNsS~~sDGAAavvl~s~~~a~~~gl~p~a~i~~~~~~g~d---P~~m~~~p~~A~~~~L~ragl~~~Did~~ 320 (400)
T PRK08234 249 -----TAGNASGINDGAAALLLMSAKKAKELGLKPLARYVTSAVAGVE---PAIMGIGPVFATRKALRRAGLTVDDIDLV 320 (400)
T ss_pred -----CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEE
T ss_conf -----3567885443789898856999997799942999831078618---78947276999999998749984228756
Q ss_pred CHHHHHHHH
Q ss_conf 336664354
Q gi|255764463|r 202 PYVAKFNSS 210 (337)
Q Consensus 202 sYsaKfaS~ 210 (337)
----=||+.
T Consensus 321 EinEAFA~~ 329 (400)
T PRK08234 321 ELNEAFAAQ 329 (400)
T ss_pred EEEHHHHHH
T ss_conf 760777888
No 208
>pfam00128 Alpha-amylase Alpha amylase, catalytic domain. Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Probab=44.81 E-value=27 Score=16.50 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH--------HHHHHHHHHHHC--CCEEEECCCC
Q ss_conf 99999999999988893676330256334554454215765379--------999999997301--4479861332
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI--------NEGICAIKKNIP--NIGIITDVAL 132 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv--------~rAIr~IK~~fp--dl~vi~DVcL 132 (337)
+..+++.+..+.+|||++|-|-|..+ .+.+.+-|++-++. ....+++-++.- .|.||.|+..
T Consensus 3 ~~gi~~kLdyl~~LGv~~i~l~P~~~----~~~~~~GY~~~d~~~vd~~~Gt~~e~~~Lv~~~H~~Gi~VilD~V~ 74 (314)
T pfam00128 3 LQGIIDKLDYLKDLGVTAIWLSPIFD----SPQSYHGYDITDYYKIDPHFGTMDDFKELIDKAHERGIKVILDLVP 74 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECEEC
T ss_conf 88999824899975999899796717----9999999683567876823299999999999984669888603121
No 209
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.63 E-value=27 Score=16.48 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH---HHHHHHCCCCCCCEECHH
Q ss_conf 289999999999999962897352466767799999---999987788577300336
Q gi|255764463|r 151 NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEI---RKKLDSHGHINVGIMPYV 204 (337)
Q Consensus 151 ND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aI---R~~Ld~~g~~~~~ImsYs 204 (337)
.|.+.+.+.+.+..+ .+|+|+-|.+|-..+..+ .+.|.+.|..+++||-=-
T Consensus 35 ~~vp~e~~v~~a~~~---~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 88 (119)
T cd02067 35 VDVPPEEIVEAAKEE---DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred CCCCHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 999999999999970---999999962202426899999999997699998599989
No 210
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=44.44 E-value=27 Score=16.46 Aligned_cols=73 Identities=23% Similarity=0.162 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC----CCCCCCCCCHHHH--------HHHHHHHHHHHHHCCCCEEEC
Q ss_conf 3799999999973014479861332710011431----0013654462899--------999999999999628973524
Q gi|255764463|r 108 NLINEGICAIKKNIPNIGIITDVALDPFTIHGHD----GILCDGEIVNDET--------IELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 108 glv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc----Gi~~~g~IdND~T--------l~~L~k~Al~~A~AGaDivAP 175 (337)
..|..||+.+|++.++-+-+.=.|-.|+|.-++- -.+. .-+.|.+. .+.+.+-...|.+||||+|.-
T Consensus 112 ~~v~eai~~lr~~l~~~vpliGf~g~P~Tla~~l~g~~~~~~-~~~~~p~~~~~lL~~itd~~i~~~~~qi~aGad~i~i 190 (326)
T cd03307 112 PTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLK-WLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITI 190 (326)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 899999999999718997669870768999999757599999-9987999999999999999999999999848887886
Q ss_pred CCCCCC
Q ss_conf 667677
Q gi|255764463|r 176 SEMMDG 181 (337)
Q Consensus 176 SdMMDG 181 (337)
.|..=|
T Consensus 191 fDs~a~ 196 (326)
T cd03307 191 ADPTAS 196 (326)
T ss_pred ECCCCC
T ss_conf 356565
No 211
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=44.38 E-value=27 Score=16.46 Aligned_cols=10 Identities=0% Similarity=0.142 Sum_probs=3.8
Q ss_pred HHHHHHHHCC
Q ss_conf 9999973014
Q gi|255764463|r 114 ICAIKKNIPN 123 (337)
Q Consensus 114 Ir~IK~~fpd 123 (337)
++.||+..|+
T Consensus 67 l~~ir~~~p~ 76 (457)
T PRK11361 67 LKEMRSHETR 76 (457)
T ss_pred HHHHHHCCCC
T ss_conf 9999820989
No 212
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=44.33 E-value=27 Score=16.45 Aligned_cols=172 Identities=17% Similarity=0.238 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH-------HHC
Q ss_conf 2899999999999999628-973524-6676779999999998778857730033666435430101675-------310
Q gi|255764463|r 151 NDETIELISHAAVIQADAG-ADIIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA-------IST 221 (337)
Q Consensus 151 ND~Tl~~L~k~Al~~A~AG-aDivAP-SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA-------~~S 221 (337)
=|.|=+.+++....+++.| +.||.= -+...-.|++|++.+....=..++-....... |. +-||.-- +|-
T Consensus 288 Y~~tPee~a~~~~~f~~~g~vnivGGCCGTTPeHI~al~~~v~~~~Pr~~~~~~~~~~~-S~-~~~~~~~~~~~~~~IGE 365 (1229)
T PRK09490 288 YDETPEEMAAQIEEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRL-SG-LEPLTIDKDSLFVNVGE 365 (1229)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEE-EC-EEEEEECCCCCCEEEEE
T ss_conf 88999999999999998498005476679998999999987503898877888862466-22-04688548886046641
Q ss_pred CCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-------HH---HCCCCEEEEECCHHHH
Q ss_conf 2446777744-31572114788988887664089879955311458999999-------96---2499899993461899
Q gi|255764463|r 222 RDLLKGDKKT-YYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRI-------KE---KFGLPTFAYQVSGEYA 290 (337)
Q Consensus 222 ~p~~~gdr~s-YQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~-------k~---~~~~P~~aYqVSGEYa 290 (337)
.-+-.|.|+- =.+--.|-.+++.++..-+++||++|=|-.+.+-+|-.... .. ...+|+.. =|-+..
T Consensus 366 RiN~tGskkf~~~l~~~d~~~~l~~A~~Qv~~GA~vLDVNv~~~~~D~~~~m~~~~~~l~~~~~i~~vPl~I--DSs~~~ 443 (1229)
T PRK09490 366 RTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMI--DSSKWE 443 (1229)
T ss_pred ECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE--ECCCHH
T ss_conf 005423099999998439899999999999758978874278765346999999999984366547788468--488889
Q ss_pred HHHHHHH----CCCCC------HHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 9999998----88978------899999999999772699998201
Q gi|255764463|r 291 MIKAASL----QGWIN------KNDAMMESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 291 mi~~a~~----~g~~d------~~~~~~E~l~~~kRAGAd~IitY~ 326 (337)
-|.+|-+ +..+| -+.-+++.+--.||=||-+|.-=+
T Consensus 444 viEaaLk~~~Gk~iiNSinlkeGee~~~~~~~l~kkYGAavV~L~~ 489 (1229)
T PRK09490 444 VIEAGLKCIQGKGIVNSISLKEGEEKFIHHARLVRRYGAAVVVMAF 489 (1229)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 9999998639945677421011558799987999972974899840
No 213
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=43.95 E-value=27 Score=16.41 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=82.7
Q ss_pred HHHHHHHHHCCH-HHHHHCCC---CCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEECC-CHHHHHHHHHHHHHCC
Q ss_conf 666435430101-67531024---46777744315721147889888876-640898799553-1145899999996249
Q gi|255764463|r 204 VAKFNSSFYGPY-RDAISTRD---LLKGDKKTYYLDPANVQEAIREASID-IQESADMLLVKP-GLPYLDVCFRIKEKFG 277 (337)
Q Consensus 204 saKfaS~fYgPF-RdA~~S~p---~~~gdr~sYQmd~~n~~eA~~e~~~D-~~EGAD~lMVKP-a~~yLDii~~~k~~~~ 277 (337)
.+=|..+|.++| ...+.... ...||.+.=..++++-.++.-.+..| ...|..+.+.=| .++|-||...+.+.+.
T Consensus 135 p~~fm~N~~~~~~~~~i~~~g~~~~~~gd~~~~~V~~~DiA~vaa~~L~~~~~~~~~~~ltGpe~lt~~eiA~~ls~vlG 214 (285)
T TIGR03649 135 PTWFMENFSEEFHVEAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLG 214 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 63998750566658999748978444788775735587899999999749776897799868865799999999999879
Q ss_pred CCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 989999346189999999988897889999999999977269999820
Q gi|255764463|r 278 LPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 278 ~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
.||-.-+||-|-. .....+.|+-+.-...+-.+....|.|....+|=
T Consensus 215 r~V~y~~v~~~~~-~~~l~~~G~p~~~a~~~~~~~~~~~~G~~~~~t~ 261 (285)
T TIGR03649 215 RKITHVKLTEEEL-AQRLQSFGMPEDLARMLASLDTAVKNGAEVRLND 261 (285)
T ss_pred CCEEEEECCHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9227885999999-9999874999999999999999997698778788
No 214
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=43.78 E-value=27 Score=16.40 Aligned_cols=71 Identities=21% Similarity=0.456 Sum_probs=59.4
Q ss_pred EECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 67589881104888786328899999999999988893676330256334554454215765379999999997301447
Q gi|255764463|r 46 LTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIG 125 (337)
Q Consensus 46 V~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~ 125 (337)
|.-|.+.+..+.||-.-.-..++.-+.++.++.+.|.--|=+= +| +.++. .|+..||++. ++=
T Consensus 14 V~vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvt--v~-~~e~A-------------~A~~~Ik~~~-~vP 76 (361)
T COG0821 14 VPVGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVT--VP-DMEAA-------------EALKEIKQRL-NVP 76 (361)
T ss_pred EEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--CC-CHHHH-------------HHHHHHHHHC-CCC
T ss_conf 7666999568886157773017999999999998189789993--69-97899-------------9999999847-998
Q ss_pred EEECCCCC
Q ss_conf 98613327
Q gi|255764463|r 126 IITDVALD 133 (337)
Q Consensus 126 vi~DVcLc 133 (337)
+++|+-++
T Consensus 77 LVaDiHf~ 84 (361)
T COG0821 77 LVADIHFD 84 (361)
T ss_pred EEEEEECC
T ss_conf 79873056
No 215
>PRK09350 lysyl-tRNA synthetase; Provisional
Probab=43.63 E-value=8.3 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=13.2
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 999999888936763302563345544
Q gi|255764463|r 73 KIKQVADLGIPAIAIFPNIPMDLRNNT 99 (337)
Q Consensus 73 eie~~~~lGI~av~LFp~I~~~~Kd~~ 99 (337)
..+.++..|...|-=|+ +.-.++.
T Consensus 80 ~~k~l~~~G~~rvfqI~---~~FR~E~ 103 (325)
T PRK09350 80 HMKRLLAAGSGPIFQLC---RSFRNEE 103 (325)
T ss_pred HHHHHHHCCCCCEEEEE---HHHCCCC
T ss_conf 99999866788558961---1322899
No 216
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=43.40 E-value=6.4 Score=20.66 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf 99962897352466767799999999987788--577300336664354
Q gi|255764463|r 164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS 210 (337)
Q Consensus 164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~ 210 (337)
.++.+|+| |..|.-|-|-++++.|+.+|. .|+-+.----=||+.
T Consensus 269 ~~a~~g~~---P~~m~~gPv~A~~k~L~ragl~~~DiD~~EinEAFA~q 314 (384)
T PRK07661 269 SFAVAGVP---PEVMGIGPIAAIPKALKLAGLELSDIGLFELNEAFASQ 314 (384)
T ss_pred CCEEEEEC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
T ss_conf 44589838---79860469999999999869986677755650667888
No 217
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=43.02 E-value=18 Score=17.57 Aligned_cols=197 Identities=22% Similarity=0.209 Sum_probs=103.4
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH
Q ss_conf 04888786328899999999999988893676330256334554454215765379999999997301447986133271
Q gi|255764463|r 55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 (337)
Q Consensus 55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~ 134 (337)
....+||---++.+-+.+.+..+.+-|-.++=.=+ -+-|++|++.+ ++-||
T Consensus 20 SCQal~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~g---------------------v~dIkai~~~v-~vPII------- 70 (229)
T COG3010 20 SCQALPGEPLDSPEIVAAMALAAEQGGAVGIRIEG---------------------VEDIKAIRAVV-DVPII------- 70 (229)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC---------------------HHHHHHHHHHC-CCCEE-------
T ss_conf 94059999876565999999999857862686120---------------------65699998617-88768-------
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH-HHHHHHHHCCCCCCCEECHHHHHHHHHHC
Q ss_conf 00114310013654462899999999999999628973524667677999-99999987788577300336664354301
Q gi|255764463|r 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ-EIRKKLDSHGHINVGIMPYVAKFNSSFYG 213 (337)
Q Consensus 135 YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~-aIR~~Ld~~g~~~~~ImsYsaKfaS~fYg 213 (337)
||++.+.-+-|.-+.-.-|---.+|++||||||--..---|-. .+.+.+....+.+..+|+=-+-|.-.+|.
T Consensus 71 -------GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a 143 (229)
T COG3010 71 -------GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNA 143 (229)
T ss_pred -------EEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf -------8880589999935566189999999779909996255687984359999997335794787325988888889
Q ss_pred CHH--HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 016--753102446777744315721147889888876640898799553114589999999624998999934618999
Q gi|255764463|r 214 PYR--DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAM 291 (337)
Q Consensus 214 PFR--dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYam 291 (337)
--- |-+|++ +.| |- .+ -.+|.-|-++.++.+.+ .+.||.|
T Consensus 144 ~~~G~D~IGTT--LsG----YT-----------------~~-----~~~~~~pDf~lvk~l~~-~~~~vIA--------- 185 (229)
T COG3010 144 HKLGFDIIGTT--LSG----YT-----------------GY-----TEKPTEPDFQLVKQLSD-AGCRVIA--------- 185 (229)
T ss_pred HHCCCCEEECC--CCC----CC-----------------CC-----CCCCCCCCHHHHHHHHH-CCCEEEE---------
T ss_conf 97399678224--201----46-----------------89-----98778972899999986-7993995---------
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHH----HHHHHHHH
Q ss_conf 999998889788999999999997726999982018----99999985
Q gi|255764463|r 292 IKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFA----MEAARILT 335 (337)
Q Consensus 292 i~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A----~~~a~~L~ 335 (337)
.|-+|.+...-+. .+.||+.++-=.| .++.+|..
T Consensus 186 ------EGr~~tP~~Ak~a----~~~Ga~aVvVGsAITRp~~It~~F~ 223 (229)
T COG3010 186 ------EGRYNTPEQAKKA----IEIGADAVVVGSAITRPEEITQWFV 223 (229)
T ss_pred ------ECCCCCHHHHHHH----HHHCCEEEEECCCCCCHHHHHHHHH
T ss_conf ------1787999999999----9718808998743378799999999
No 218
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=42.93 E-value=22 Score=17.05 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.1
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99553114589999999624998999934
Q gi|255764463|r 257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQV 285 (337)
Q Consensus 257 lMVKPa~~yLDii~~~k~~~~~P~~aYqV 285 (337)
+-|+||+||-++...+.++..+|--+-+-
T Consensus 15 i~v~~GlsY~~l~~~vs~KL~L~~~~~~L 43 (80)
T cd06406 15 IQVARGLSYATLLQKISSKLELPAEHITL 43 (80)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCHHHEEE
T ss_conf 99469995899999999886699568189
No 219
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.52 E-value=19 Score=17.47 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=14.2
Q ss_pred ECCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 3461899999999888978899999
Q gi|255764463|r 284 QVSGEYAMIKAASLQGWINKNDAMM 308 (337)
Q Consensus 284 qVSGEYami~~a~~~g~~d~~~~~~ 308 (337)
++++-|++.----..|.+++++++.
T Consensus 231 ~~~~g~~~a~~li~~GiLs~~eali 255 (311)
T COG3366 231 NIIAGIVLAAGLLDSGILSEKEALI 255 (311)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8999999987775247778999999
No 220
>PRK07025 consensus
Probab=42.31 E-value=3.4 Score=22.57 Aligned_cols=29 Identities=38% Similarity=0.459 Sum_probs=17.9
Q ss_pred HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99962897352466767799999999987788
Q gi|255764463|r 164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH 195 (337)
Q Consensus 164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~ 195 (337)
.++.+|+ .|+.|--|-|.+++++|+.+|.
T Consensus 278 ~~~~~g~---~P~~~~~~pv~A~~k~l~~agl 306 (393)
T PRK07025 278 AYANAGV---DPSVMGMGPVPASRRCLERAGW 306 (393)
T ss_pred CCCEEEE---CHHHHCCCHHHHHHHHHHHCCC
T ss_conf 1327875---8788480779999999998599
No 221
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=41.91 E-value=7.5 Score=20.22 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=27.8
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf 999962897352466767799999999987788--57730033666435
Q gi|255764463|r 163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS 209 (337)
Q Consensus 163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS 209 (337)
+.++.+|+| |..|..|-|.||+++|+.+|. .|+-+.----=||+
T Consensus 271 ~~~a~~g~d---P~~m~~gPv~A~~k~L~~agl~~~Did~~EinEAFAa 316 (387)
T PRK07850 271 VAQALVGAE---PYYHLDGPVQSTAKVLEKAGMKIGDIDLVEINEAFAS 316 (387)
T ss_pred EEEEEEECC---HHHCCCCHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
T ss_conf 966788748---5770706899999999985998346876786057788
No 222
>PHA00452 T3/T7-like RNA polymerase
Probab=41.82 E-value=29 Score=16.20 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=88.5
Q ss_pred CCCHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-CCCCCC--------------------HHHHHHH--HHHH
Q ss_conf 288999-999999999888936763302563345544542-157653--------------------7999999--9997
Q gi|255764463|r 64 RMSIDV-AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSH-IIDPDN--------------------LINEGIC--AIKK 119 (337)
Q Consensus 64 R~Sid~-L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gse-A~n~dg--------------------lv~rAIr--~IK~ 119 (337)
-|.|+. +++.++++++.|-..+..||-+++...-+.-.. .-|++. .-|+... .+-.
T Consensus 300 ~w~IN~~vldv~~~~~~~g~~~~~~~p~~~~~~~P~~P~~~~~~~~~~~~wk~~~~~~~~~~~~~~s~r~~~~~~l~~A~ 379 (816)
T PHA00452 300 AWRINKKVLAVANEVVEWKNCSVGDIPAIPREELPPKPEDIDTEEEAFKAWKKAAAAIYRKEKERRSRRWRTEFMLNVAN 379 (816)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81338889999999997489876778898776799799997679999999999999999999999999999999999999
Q ss_pred HHCC---CEEE--ECCC-----CCHHHCCCCC---CCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 3014---4798--6133-----2710011431---001--3654462899999999999999628973524667677999
Q gi|255764463|r 120 NIPN---IGII--TDVA-----LDPFTIHGHD---GIL--CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ 184 (337)
Q Consensus 120 ~fpd---l~vi--~DVc-----Lc~YT~hGHc---Gi~--~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~ 184 (337)
.|-+ +..- .|-= .-.++..|.| |++ .+|+..+..-+.-|.-.--.. .|.|=+ -+|.||.
T Consensus 380 ~f~~~~~~y~p~~~DfRGR~Yp~~~l~~qg~d~~r~ll~f~~~~~l~~~g~~wl~i~~an~--~g~dk~----~~~~r~~ 453 (816)
T PHA00452 380 KFADFKAIYFPYNMDSRGRVYAVSMLNPQGNDMGKALLRFAEGKPLGEDGLYWLKVHGANC--YGVDKV----TFDDRVA 453 (816)
T ss_pred HHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC--CCCCCC----CHHHHHH
T ss_conf 8548986787666257875067757798885788899986568817830799999999873--799767----9999999
Q ss_pred HHHHHHHHCCC-CCCCEECHHHHHHHHHHCCHH---------HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999987788-577300336664354301016---------75310244677774431572114788988887664089
Q gi|255764463|r 185 EIRKKLDSHGH-INVGIMPYVAKFNSSFYGPYR---------DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 (337)
Q Consensus 185 aIR~~Ld~~g~-~~~~ImsYsaKfaS~fYgPFR---------dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA 254 (337)
-..+.+|.--- .+-| +.+ .+...-=-||. +|..+...| -.+=--++|-.....-...+..--.+||
T Consensus 454 w~~~~~~~i~~~a~~P-l~~--~~W~~ad~P~q~LA~c~E~~~~~~~~~~~-~s~lpv~~DgsCnGlQH~aal~rD~~ga 529 (816)
T PHA00452 454 WVEENHDLIRAIAEDP-LNN--TWWAEADSPFCFLAFCFEYAAVVHHGTAY-TSGLPVAMDGTCSGLQHFSAMLRDEVGG 529 (816)
T ss_pred HHHHHHHHHHHHHHCC-CCC--HHHHCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCHHHHHHHHHCCHHHH
T ss_conf 9998899999998585-667--36550787899999999999999768724-3277411078872999999972586321
Q ss_pred CEEEE----CCCHHHHHHHHHH
Q ss_conf 87995----5311458999999
Q gi|255764463|r 255 DMLLV----KPGLPYLDVCFRI 272 (337)
Q Consensus 255 D~lMV----KPa~~yLDii~~~ 272 (337)
-.|=+ ||+=-|-.|...+
T Consensus 530 ~~VNL~p~d~p~DvY~~Va~~v 551 (816)
T PHA00452 530 AAVNLLPSDKPQDIYKIVAEKV 551 (816)
T ss_pred HHHCCCCCCCCCCHHHHHHHHH
T ss_conf 4523678888651899999999
No 223
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=41.73 E-value=29 Score=16.19 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHH--HHHHHHCCCCEEEEEECCCCC----CC----------------C
Q ss_conf 3311666758988110488878632889999999--999998889367633025633----45----------------5
Q gi|255764463|r 40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK--IKQVADLGIPAIAIFPNIPMD----LR----------------N 97 (337)
Q Consensus 40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~e--ie~~~~lGI~av~LFp~I~~~----~K----------------d 97 (337)
.||=+-|.+=. .+-++.|.-.|=+.-.+.+. +..+.+|||++|=|-|+-.-. ++ -
T Consensus 173 vIYE~HVr~fT---~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFA 249 (697)
T COG1523 173 VIYEAHVRDFT---QLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFA 249 (697)
T ss_pred EEEEEEECCCC---CCCCCCCHHHCCCEEHHCCCCHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89984105566---679999532054431113623778998709766997252587315445665663555777512557
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----C-CCEEEECCCCCH
Q ss_conf 445421576537999999999730----1-447986133271
Q gi|255764463|r 98 NTGSHIIDPDNLINEGICAIKKNI----P-NIGIITDVALDP 134 (337)
Q Consensus 98 ~~GseA~n~dglv~rAIr~IK~~f----p-dl~vi~DVcLc~ 134 (337)
+.|..|.+|+ + +..|++.|+-+ . .|.||-||-.-.
T Consensus 250 p~~~Yss~p~-p-~~~i~EfK~mV~~lHkaGI~VILDVVfNH 289 (697)
T COG1523 250 PEGRYASNPE-P-ATRIKEFKDMVKALHKAGIEVILDVVFNH 289 (697)
T ss_pred CCCCCCCCCC-C-CHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 7842247997-4-11779999999999975998999985147
No 224
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=41.51 E-value=30 Score=16.17 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
..+++..++-++++.+. +-.+ .| |.+-+-..| .+.|+.||+.||+.-|++|.=+.-
T Consensus 9 ~~~~~~A~~l~~~l~~~----v~~i-Kv--------G~~L~~~~G--~~~v~~lk~~~p~~~IflDlK~~D--------- 64 (202)
T cd04726 9 LLDLEEALELAKKVPDG----VDII-EA--------GTPLIKSEG--MEAVRALREAFPDKIIVADLKTAD--------- 64 (202)
T ss_pred CCCHHHHHHHHHHHCCC----CCEE-EE--------CHHHHHHHC--HHHHHHHHHHCCCCEEEEEEEECC---------
T ss_conf 99999999999970354----8799-98--------959999768--999999998789997999865336---------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 13654462899999999999999628973524
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
...|+ ++ .-+++|||++-=
T Consensus 65 -------i~~tv---a~---~~~~~Gad~~tv 83 (202)
T cd04726 65 -------AGALE---AE---MAFKAGADIVTV 83 (202)
T ss_pred -------CHHHH---HH---HHHHHCCCEEEE
T ss_conf -------16799---99---999707988999
No 225
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=41.48 E-value=30 Score=16.16 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=51.7
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC----C
Q ss_conf 589881104888786328899999999999988893676330256334554454215765379999999997301----4
Q gi|255764463|r 48 SGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP----N 123 (337)
Q Consensus 48 eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp----d 123 (337)
=|-+.+..|.||-...-..++.-++++.++.+.|.--|=+= +| ..++. ++++.||+..- +
T Consensus 21 iGg~~Pi~vQSMt~t~T~d~~atv~Qi~~l~~aGceiVRvt--vp-~~~~a-------------~al~~I~~~l~~~~~~ 84 (613)
T PRK02048 21 LGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLT--TQ-GVREA-------------ENLMNINIGLRSQGYM 84 (613)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHHHHCCCC
T ss_conf 57999676664699986158999999999998599989988--89-99999-------------8499999998627998
Q ss_pred CEEEECCCCCH
Q ss_conf 47986133271
Q gi|255764463|r 124 IGIITDVALDP 134 (337)
Q Consensus 124 l~vi~DVcLc~ 134 (337)
+=+++|+-+++
T Consensus 85 iPlvADIHF~~ 95 (613)
T PRK02048 85 VPLVADVHFNP 95 (613)
T ss_pred CCEEEECCCCH
T ss_conf 98797327887
No 226
>pfam12010 DUF3502 Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.
Probab=41.48 E-value=18 Score=17.67 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=42.5
Q ss_pred ECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC
Q ss_conf 346189999999988897889999999999977269999820189999998509
Q gi|255764463|r 284 QVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS 337 (337)
Q Consensus 284 qVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~~~ 337 (337)
+|..||.. +-..|..|.+..+-|-.--+|-||-|-|+.-.-+++-.||..+
T Consensus 89 ~V~~~y~~---~L~tG~vDpe~~l~~~~~kLk~AGidkV~~E~QkQ~D~~~a~~ 139 (140)
T pfam12010 89 NVMSEFEP---ALYTGSVDPEEYLPKLNQKLKAAGIDKVQKEMQKQLDEWKAKN 139 (140)
T ss_pred HHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999---9876586889999999999998358999999999999999835
No 227
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=41.36 E-value=29 Score=16.29 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q ss_conf 99999999997726999982
Q gi|255764463|r 305 DAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 305 ~~~~E~l~~~kRAGAd~Iit 324 (337)
+....-|.+.||||||.|+|
T Consensus 209 ~~~~~kL~~~ke~gad~ivt 228 (293)
T COG2048 209 KLAKRKLQSAKEAGADCIVT 228 (293)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999888659887984
No 228
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=41.26 E-value=27 Score=16.40 Aligned_cols=81 Identities=27% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 88999999999999888936763302563345--------5445421576537999999999730144798613327100
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLR--------NNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~K--------d~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
||.+.+-+++++..+.+..-. .++...+.+| |+.|+..|+. + -+..||+.-.++.+
T Consensus 120 ~~~~~lee~~~~~~~~~l~i~-d~~k~~~~l~~a~VlYl~DNaGEi~FD~--v---lie~ik~~~~~vv~---------- 183 (285)
T COG1578 120 FSPFDLEEEVEKLLDAELYID-DSPKLLELLKNASVLYLTDNAGEIVFDK--V---LIEVIKELGKKVVV---------- 183 (285)
T ss_pred CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHCCCCEEEEECCCCCHHHHH--H---HHHHHHHCCCCEEE----------
T ss_conf 777679999998623764424-6588988851584899925874078889--9---99999845884599----------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 11431001365446289999999999999962897352
Q gi|255764463|r 137 IHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA 174 (337)
Q Consensus 137 ~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337)
+++.|-|.||+|++-. .++|.|-+|
T Consensus 184 ------vVrg~PIlnDaT~EDa-------k~~~i~~i~ 208 (285)
T COG1578 184 ------VVRGGPILNDATMEDA-------KEAGIDEIA 208 (285)
T ss_pred ------EECCCCEECHHHHHHH-------HHCCCCHHH
T ss_conf ------9768753423108889-------871922010
No 229
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=41.13 E-value=25 Score=16.72 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEECCCCC
Q ss_conf 86328899999----999999988893676330256334554454215765379999999997301---44798613327
Q gi|255764463|r 61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP---NIGIITDVALD 133 (337)
Q Consensus 61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp---dl~vi~DVcLc 133 (337)
|+.|--.|... +...++++.|.-.=.+.|+.. -.+|+ ...++ .....+..+|-.|. +-+.+|
T Consensus 190 gIsReeqD~~A~~Sh~rA~~A~~~G~f~~eIvPv~~-~~~De----~~R~~-tt~e~La~LkPvF~~~~~~GtvT----- 258 (428)
T PRK09268 190 GISREAQDELAAASHQNLAAAYERGFFDDLITPFLG-LTRDN----NLRPD-SSLEKLAKLKPVFGKKGGDGTMT----- 258 (428)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC-CCCCC----CCCCC-CCHHHHHCCCCCCCCCCCCCCEE-----
T ss_conf 989999999999999999999982986221076421-15889----85999-98667633576333557888666-----
Q ss_pred HHHCCCCCCCCCCC----CCCHHHHHHHHHHHH----HHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHCCC--CCCCEEC
Q ss_conf 10011431001365----446289999999999----99996289735-2466767799999999987788--5773003
Q gi|255764463|r 134 PFTIHGHDGILCDG----EIVNDETIELISHAA----VIQADAGADII-APSEMMDGRVQEIRKKLDSHGH--INVGIMP 202 (337)
Q Consensus 134 ~YT~hGHcGi~~~g----~IdND~Tl~~L~k~A----l~~A~AGaDiv-APSdMMDGrV~aIR~~Ld~~g~--~~~~Ims 202 (337)
.|.+.-+.|| .+-+.+..+.+.-.- +.++.+|+|.+ .|..|+-|-|.||+++|+.+|. .|+-+.-
T Consensus 259 ----AgNss~~~DGAAa~ll~s~~~a~~~gl~pla~iv~~~~~gvd~~~~p~~~~~~Pv~A~~~~L~ragl~~~Did~~E 334 (428)
T PRK09268 259 ----AGNSTPLTDGASVVLLASEEWAKAHGLPVLAYLVDAETAAVDFVHGKEGLLMAPTYAVPRLLARNGLTLQDFDFYE 334 (428)
T ss_pred ----CCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHCCCCHHHCCHHH
T ss_conf ----6336865676000000269999976998509999889963676668502014689999999998599979847998
Q ss_pred HHHHHHH
Q ss_conf 3666435
Q gi|255764463|r 203 YVAKFNS 209 (337)
Q Consensus 203 YsaKfaS 209 (337)
---=||+
T Consensus 335 inEAFAa 341 (428)
T PRK09268 335 IHEAFAS 341 (428)
T ss_pred HHHHHHH
T ss_conf 7466788
No 230
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.10 E-value=30 Score=16.13 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=56.8
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHH
Q ss_conf 4301016753102446777744315721147889888876640898799553114589999999624-998999934618
Q gi|255764463|r 210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGE 288 (337)
Q Consensus 210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGE 288 (337)
.|+|...+|+..........+.-+.-+.|..||...+ +.|||++|.-- |.. +-++++-+.. ..|-..--+||
T Consensus 162 ~~~g~~~~av~~~r~~~~~~~kIeVEv~tl~ea~~a~----~~g~D~I~LDn-~~~-~~~~~~v~~~~~~~~v~ieaSG- 234 (269)
T cd01568 162 AAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEAL----EAGADIIMLDN-MSP-EELKEAVKLLKGLPRVLLEASG- 234 (269)
T ss_pred HHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH----HCCCCEEEECC-CCH-HHHHHHHHHHCCCCCEEEEEEC-
T ss_conf 6738999999999986899843999949899999999----76999999879-899-9999999984779985999989-
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 99999999888978899999999999772699998201
Q gi|255764463|r 289 YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 289 Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~ 326 (337)
-+++ +.+..+...|.|+|.|=.
T Consensus 235 -----------gI~~-----~ni~~ya~~GvD~Is~g~ 256 (269)
T cd01568 235 -----------GITL-----ENIRAYAETGVDVISTGA 256 (269)
T ss_pred -----------CCCH-----HHHHHHHHCCCCEEEECH
T ss_conf -----------9999-----999999975999999084
No 231
>PRK13435 response regulator; Provisional
Probab=41.00 E-value=22 Score=16.99 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEE---CC-CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 11478898888766408987995---53-11458999999962499899993461899999999888978
Q gi|255764463|r 237 ANVQEAIREASIDIQESADMLLV---KP-GLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN 302 (337)
Q Consensus 237 ~n~~eA~~e~~~D~~EGAD~lMV---KP-a~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d 302 (337)
.|..||+..+. .+--|.+.+ -| |+.=+++++++++..++|+..---+.|+ -.+...|+.|
T Consensus 33 ~~~~eAl~~~~---~~~PDlvllDi~LpdG~~G~e~~r~l~~~~~ipvI~lTa~~d~---~~~~~aGA~d 96 (141)
T PRK13435 33 STSEQALALGR---RAQPDVALVDIRLADGPTGVEVARRLSIDGGVEVIFMTANPER---VGHDFAGALG 96 (141)
T ss_pred CCHHHHHHHHH---CCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHCCCCC
T ss_conf 99999999976---5999899978878999989999999987599838999777998---6013459985
No 232
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=40.97 E-value=7.4 Score=20.25 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECHHHHHHHH
Q ss_conf 99628973524667677999999999877885--77300336664354
Q gi|255764463|r 165 QADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPYVAKFNSS 210 (337)
Q Consensus 165 ~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsYsaKfaS~ 210 (337)
++.+|+| |..|.-|-|.+|+++|+.+|.+ |+-+.----=||+.
T Consensus 285 ~~~~g~~---P~~m~~gPv~A~~k~L~~agl~~~Did~~EinEAFA~~ 329 (399)
T PRK09052 285 FAVAGVP---PEIMGIGPIEAIPAALKQAGLKQDDLDWIELNEAFAAQ 329 (399)
T ss_pred EEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEHHHHHHH
T ss_conf 4799828---78857689999999999839986677878860343888
No 233
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=40.86 E-value=30 Score=16.10 Aligned_cols=149 Identities=20% Similarity=0.274 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 34554454215765379999999997301447986133271001143100136544628999999999999996289735
Q gi|255764463|r 94 DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADII 173 (337)
Q Consensus 94 ~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv 173 (337)
-.|=..|+.++-|+..+.+-|+..|+. ++.+.+.=-|-++--+ .|+ ++.+.+. -.+-|.|+|
T Consensus 41 ~~K~g~gt~~l~p~~~l~eKI~l~~~~--~V~v~~GGtlfE~a~~-------~~~------~d~y~~~---~~~lGf~~i 102 (245)
T pfam02679 41 FLKFGWGTSALMPEDILKEKIDLAHEH--GVYVYTGGTLFEIAIL-------QGK------FDEYLRE---CKELGFDAI 102 (245)
T ss_pred EEEECCCEEEECCHHHHHHHHHHHHHC--CCEEECCCHHHHHHHH-------CCC------HHHHHHH---HHHCCCCEE
T ss_conf 899768765017889999999999985--9948479699999997-------383------9999999---998699889
Q ss_pred ECCCCC-----CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 246676-----779999999998778857730033666435430101675310244677774431572114788988887
Q gi|255764463|r 174 APSEMM-----DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASI 248 (337)
Q Consensus 174 APSdMM-----DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~ 248 (337)
-=||=. |-+...|+++ -++||+=. |= + |.|..=--.+.+..+-++.+..
T Consensus 103 EiSdg~i~i~~~~~~~~I~~~-~~~G~~v~---~E---------------------v-G~K~~~~~~~~~~~~~I~~~~~ 156 (245)
T pfam02679 103 EISDGSIELPEEERLRLIRKA-KKAGFKVL---SE---------------------V-GKKDPEADSELTPDELIEQIER 156 (245)
T ss_pred EECCCCCCCCHHHHHHHHHHH-HHCCCEEE---EE---------------------E-CCCCCCCCCCCCHHHHHHHHHH
T ss_conf 956884468989999999999-97899796---64---------------------1-5467543456799999999999
Q ss_pred HHHCCCCEEEECCC------------HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 66408987995531------------145899999996249989999346
Q gi|255764463|r 249 DIQESADMLLVKPG------------LPYLDVCFRIKEKFGLPTFAYQVS 286 (337)
Q Consensus 249 D~~EGAD~lMVKPa------------~~yLDii~~~k~~~~~P~~aYqVS 286 (337)
|.+-||++||+.-- ..--|+|.++-+...+--..+...
T Consensus 157 ~LeaGA~~ViiEarEsg~~Gi~~~~g~~r~~~i~~I~~~~~~~~iifEAp 206 (245)
T pfam02679 157 DLEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEILERLGLEKLIFEAP 206 (245)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHCEEEECC
T ss_conf 99769828998510148756508898871889999997388300899789
No 234
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=40.54 E-value=31 Score=16.07 Aligned_cols=11 Identities=9% Similarity=-0.103 Sum_probs=4.6
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999973014
Q gi|255764463|r 113 GICAIKKNIPN 123 (337)
Q Consensus 113 AIr~IK~~fpd 123 (337)
.++.||+.+|+
T Consensus 65 ~l~~l~~~~p~ 75 (202)
T PRK09390 65 LLRRLKARGSP 75 (202)
T ss_pred HHHHHHHCCCC
T ss_conf 99998722899
No 235
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=40.53 E-value=9.5 Score=19.51 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=64.6
Q ss_pred CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-C----HHHHHHHHHHHHHC---CCEEEE
Q ss_conf 86328899999----999999988893676330256334554454215765-3----79999999997301---447986
Q gi|255764463|r 61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-N----LINEGICAIKKNIP---NIGIIT 128 (337)
Q Consensus 61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-g----lv~rAIr~IK~~fp---dl~vi~ 128 (337)
|+.|--.|..- +....+++.|.-.=-++|+.-+.+|... ..++.| + .-...+.++|-.|. .-+.+
T Consensus 173 gIsRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvpv~v~~~~g~~--~~~~~De~~R~~tt~e~La~L~P~f~~~~~~Gtv- 249 (404)
T PRK06205 173 GISREEQDELAVRSHQRAAAAQEAGLFDDEIVPVTVPQRKGDP--VVVDRDEHPRADTTVESLAKLRPIMGKQDPEATV- 249 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC--EEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCE-
T ss_conf 9499999999999999999987759860137767850457885--0351465766898865674178755555778842-
Q ss_pred CCCCCHHHCCCCCCCCCCCC----CCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCC
Q ss_conf 13327100114310013654----4628999999999----9999962897352466767799999999987788--577
Q gi|255764463|r 129 DVALDPFTIHGHDGILCDGE----IVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INV 198 (337)
Q Consensus 129 DVcLc~YT~hGHcGi~~~g~----IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~ 198 (337)
+-|++.-+.||- +-..+..+.|.-. =+.++.+|+| |..|--|-|.||+++|+++|. .|+
T Consensus 250 --------TAgNsS~~~DGAAa~ll~s~~~a~~~gl~plari~~~~~~g~d---P~~m~~gpv~A~~~~L~~agl~~~Di 318 (404)
T PRK06205 250 --------TAGNASGQNDAAAACLVTTEDKAEELGLEPLARLVSWAVAGVE---PSRMGIGPVPATEKALARAGLTLDDI 318 (404)
T ss_pred --------ECCCCCCCCCCHHHHEECCHHHHHHCCCCCEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHC
T ss_conf --------2565575554314310037999997699951999830278608---78827274999999999859983107
Q ss_pred CEECHHHHHHHH
Q ss_conf 300336664354
Q gi|255764463|r 199 GIMPYVAKFNSS 210 (337)
Q Consensus 199 ~ImsYsaKfaS~ 210 (337)
-+.----=||+.
T Consensus 319 d~~EinEAFA~q 330 (404)
T PRK06205 319 DLIELNEAFAAQ 330 (404)
T ss_pred CEEEECHHHHHH
T ss_conf 744631477888
No 236
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=40.22 E-value=31 Score=16.04 Aligned_cols=64 Identities=28% Similarity=0.382 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCCCHHHHHH---------------HHHHHCCCCCCCEECHHHHHHHHHHC
Q ss_conf 62899999999999999628973524-667677999999---------------99987788577300336664354301
Q gi|255764463|r 150 VNDETIELISHAAVIQADAGADIIAP-SEMMDGRVQEIR---------------KKLDSHGHINVGIMPYVAKFNSSFYG 213 (337)
Q Consensus 150 dND~Tl~~L~k~Al~~A~AGaDivAP-SdMMDGrV~aIR---------------~~Ld~~g~~~~~ImsYsaKfaS~fYg 213 (337)
+-|..-+.|...|..+.++|||+++- .-.|---.-.|+ +++-..|...+++|.--.--.+.||-
T Consensus 56 ~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~ 135 (230)
T COG1794 56 EWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYR 135 (230)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 65658999999999999659998997077378999999985499733078999999876588615886130057768999
No 237
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=40.04 E-value=3 Score=22.95 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCH
Q ss_conf 7863288999999----9999998889367633025633455445421576537999999999730-1447986133271
Q gi|255764463|r 60 PDVMRMSIDVAVE----KIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI-PNIGIITDVALDP 134 (337)
Q Consensus 60 PGv~R~Sid~L~~----eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~ 134 (337)
=|+.|--.|...- ...++++.|.-. -+.|.+..+.+-..-.|...++ .....+..+|-.| ++-+.+|- .-++
T Consensus 188 ~gisRe~qD~~A~~Sh~rA~~A~~~G~f~-eivp~~~~~g~~~~~De~iR~~-tt~e~La~L~p~F~~~~GtvTA-gNss 264 (426)
T PRK08170 188 FGITREAMDAYAARSHQRLAAAQAEGRLK-EVVPLFDRDGKFYDQDDGVRPD-SSMEKLAKLKPFFDRPYGRVTA-GNSS 264 (426)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCEEEECCCCCCCC-CCHHHHHHCCCCCCCCCCEEEC-CCCC
T ss_conf 79799999999997199999999809986-6871464887599567654778-8876785389760078982641-5788
Q ss_pred HHCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf 0011431001-365446289999999999999962897352466767799999999987788--577300336664354
Q gi|255764463|r 135 FTIHGHDGIL-CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS 210 (337)
Q Consensus 135 YT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~ 210 (337)
-.++|=+.++ ...+--....++-|+++ +.++.+|+| |+.|.-|-|.+++++|+.+|. .|+-+.---==||+.
T Consensus 265 ~~~DGAAavll~s~~~a~~~gl~pla~i-v~~~~~g~d---P~~mg~gPv~A~~k~L~~agl~~~DiD~~EinEAFAaq 339 (426)
T PRK08170 265 QITDGACWLLLASEEAVKKYGLPPLGRI-VDSQWAALD---PSQMGLGPVHAATPLLQRHGLTLEDIDYWEINEAFAAQ 339 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEE-EEEEECCCC---HHHHCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 7531889999970888986699741999-976771368---88966584999999999809986765524340466899
No 238
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=39.70 E-value=32 Score=15.98 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCEEEECCCCCEEECCCC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 116667589881104888--786328899999999999988893676330256334554454215765379999999997
Q gi|255764463|r 42 LPIFLTSGEKTVESINSM--PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK 119 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SM--PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~ 119 (337)
.|++=-=|-..+++|+.- -+.+-.+.+.+.++++++.+.|.+++-+=.+.+... + +. -.--.+.++++++
T Consensus 113 ~Pl~~LLGg~~r~~i~~y~s~~~~~~~~~~~~~~~~~~~~~Gf~~~K~k~g~~~~~-~----~~---~~~di~~v~~ir~ 184 (357)
T cd03316 113 VPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-G----ED---LREDLARVRAVRE 184 (357)
T ss_pred CCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-C----CC---HHHHHHHHHHHHH
T ss_conf 98999828865576236776247899999999999999976997898536888644-1----26---9999999999999
Q ss_pred HH-CCCEEEECC
Q ss_conf 30-144798613
Q gi|255764463|r 120 NI-PNIGIITDV 130 (337)
Q Consensus 120 ~f-pdl~vi~DV 130 (337)
.+ |++-++.|.
T Consensus 185 ~~g~~~~l~vDa 196 (357)
T cd03316 185 AVGPDVDLMVDA 196 (357)
T ss_pred HHCCCCEEEECC
T ss_conf 829995698657
No 239
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=39.55 E-value=32 Score=15.97 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999999988893676330
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFP 89 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LFp 89 (337)
-..|.+.+.++.++||.+|-|=|
T Consensus 21 W~~l~~~~~~l~~~GitaiWiPP 43 (482)
T PRK09441 21 WNELAERAPGLADIGITAVWLPP 43 (482)
T ss_pred HHHHHHHHHHHHHCCCCEEECCC
T ss_conf 99999878999966998798896
No 240
>TIGR00620 sporelyase spore photoproduct lyase; InterPro: IPR004594 Members of this family are involved in the direct repair of UV induced spore photoproducts (thymine dimer 5-thyminyl-5,6-dihydrothymine). The protein repairs UV radiation-induced DNA damage during spore germination by monomerization of these thymine dimers..
Probab=39.18 E-value=32 Score=15.93 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 47788877331166675898811048887863288999999999999888936763302563345544542157653799
Q gi|255764463|r 32 EHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLIN 111 (337)
Q Consensus 32 Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~ 111 (337)
+-.--..=.|.|+||+||=.+ .-..|++.+++.+=.-++.=+-|-+|. +. +..
T Consensus 82 ~A~YPLGFIiAP~yI~eGW~E-------------~Y~~Ll~~L~~~LP~d~~~~~TFE~I~-HR-------------fT~ 134 (199)
T TIGR00620 82 KAGYPLGFIIAPIYIYEGWKE-------------GYRNLLEKLDEALPRDLRHDLTFEVIQ-HR-------------FTK 134 (199)
T ss_pred CCCCCCEEEEEEEEEECCCCH-------------HHHHHHHHHHHHCCHHHHHCCCEEEEC-CC-------------CCC
T ss_conf 058780157710777548604-------------588999998884247665301312122-54-------------351
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999730144
Q gi|255764463|r 112 EGICAIKKNIPNI 124 (337)
Q Consensus 112 rAIr~IK~~fpdl 124 (337)
+|=+-|.+.||+-
T Consensus 135 ~AK~vI~~~yP~~ 147 (199)
T TIGR00620 135 PAKRVIEKNYPKT 147 (199)
T ss_pred HHHHHHHHHCCCC
T ss_conf 5789887607887
No 241
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.61 E-value=33 Score=15.87 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 33116667589881104888786328899999999999988893676330256334554454215765379999999997
Q gi|255764463|r 40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKK 119 (337)
Q Consensus 40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~ 119 (337)
+=.|+.--=|-..++.|+.---+...+.+.+.+++++..+.|.++|-+=+.-+....+ +.... .-..+.++++++
T Consensus 97 ~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~K~k~~~~~~~~~--~~~~~---~~di~~v~~vR~ 171 (352)
T cd03325 97 LGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID--TSKKV---DAAVERVAALRE 171 (352)
T ss_pred CCCCHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CCHHH---HHHHHHHHHHHH
T ss_conf 4994999727766774268775688998999999999996799879986777434466--40319---999999999999
Q ss_pred HHC-CCEEEECCC
Q ss_conf 301-447986133
Q gi|255764463|r 120 NIP-NIGIITDVA 131 (337)
Q Consensus 120 ~fp-dl~vi~DVc 131 (337)
.++ ++-++.|..
T Consensus 172 ~~G~~~~l~vDan 184 (352)
T cd03325 172 AVGPDIDIGVDFH 184 (352)
T ss_pred HHCCCCCEEEECC
T ss_conf 8689981999889
No 242
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=38.50 E-value=19 Score=17.44 Aligned_cols=74 Identities=32% Similarity=0.449 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf 63288999999999999888936763302563345544542157653799999999973014479861332710011431
Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337)
+.--+.++.+..++-+.+-|+++|=+= ..++.+ -++||.+++.||+..|
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEIT------l~sp~a----------~e~I~~l~~~~p~~lI--------------- 67 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEIT------LRTPAA----------LEAIRALAKEFPEALI--------------- 67 (211)
T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEEE------CCCCCH----------HHHHHHHHHHCCCCEE---------------
T ss_conf 970899999999999997698769996------479878----------9999999986746588---------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC
Q ss_conf 00136544628999999999999996289735-246
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADII-APS 176 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS 176 (337)
--|-|.|.++++ ..+.|||+.+ .|.
T Consensus 68 ---GAGTVL~~~q~~-------~a~~aGa~fiVsP~ 93 (211)
T COG0800 68 ---GAGTVLNPEQAR-------QAIAAGAQFIVSPG 93 (211)
T ss_pred ---CCCCCCCHHHHH-------HHHHCCCCEEECCC
T ss_conf ---245566999999-------99985997898999
No 243
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=38.41 E-value=2 Score=24.05 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=27.6
Q ss_pred HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf 99962897352466767799999999987788--57730033666435
Q gi|255764463|r 164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS 209 (337)
Q Consensus 164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS 209 (337)
.++.+|+| |..|--|-|.+|++.|+.+|. .|+-..----=||+
T Consensus 278 ~~~~~g~d---P~~m~~~p~~A~~k~L~~agl~~~Did~~EinEAFA~ 322 (392)
T PRK05656 278 AYANAGVD---PAIMGIGPVSATRRCLDKAGWSLAELDLIEANEAFAA 322 (392)
T ss_pred EEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHCCCEEEECCHHHH
T ss_conf 99996219---7893828999999999984998310877785216789
No 244
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=38.06 E-value=33 Score=15.82 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-------ECCCCCHH
Q ss_conf 32889999999999998889367633025633455445421576537999999999730144798-------61332710
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGII-------TDVALDPF 135 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi-------~DVcLc~Y 135 (337)
.+++.+++.+|++.+.+.|.+.++|--+ ++.|. .+-..+.++|+.|++.|..-+-| .-.-..+|
T Consensus 113 k~Lt~eEi~~E~~al~~~G~krilLvtG--E~p~~-------~~~~Yi~~~i~~iy~~~~~~g~IrrvnVei~Pl~~eeY 183 (471)
T PRK09613 113 KKLTQEEIREEVKALESMGHKRLALVAG--EHPVN-------CDIDYILESIKTIYSTKNGNGEIRRVNVNIAPTTVENY 183 (471)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEC--CCCCC-------CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHH
T ss_conf 3789999999999999769731898714--68887-------98899999999998752467853368899447986999
Q ss_pred H---CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0---114310013654462899999
Q gi|255764463|r 136 T---IHGHDGILCDGEIVNDETIEL 157 (337)
Q Consensus 136 T---~hGHcGi~~~g~IdND~Tl~~ 157 (337)
. ..|-+|+.-=.+--|.+|-+.
T Consensus 184 ~~L~~aGigt~~vfQETYh~~tY~~ 208 (471)
T PRK09613 184 KKLKEAGIGTYQLFQETYHKPTYEK 208 (471)
T ss_pred HHHHHCCCCEEEEEEEECCHHHHHH
T ss_conf 9999869996999863078878998
No 245
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=37.22 E-value=3.7 Score=22.27 Aligned_cols=38 Identities=8% Similarity=0.184 Sum_probs=25.5
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECH
Q ss_conf 9999628973524667677999999999877885--7730033
Q gi|255764463|r 163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPY 203 (337)
Q Consensus 163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsY 203 (337)
+.++.+|+ .|.+|-.|-+.+++++|+.+|.. |+.+.--
T Consensus 277 ~~~~~~g~---~p~~~~~~p~~A~~~~l~~agl~~~Did~~Ei 316 (393)
T PRK08235 277 LAHTAIAV---EAKDFPRTPGYAINALLEKTGKTIEDIDLFEI 316 (393)
T ss_pred ECCEEEEE---CHHHHCCCHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf 81428860---87885447799999999984998321673241
No 246
>pfam10996 Beta-Casp Beta-Casp domain. The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains.
Probab=37.21 E-value=26 Score=16.59 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=22.7
Q ss_pred HCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCCCEECHHHH
Q ss_conf 62897352466767799999999987---78857730033666
Q gi|255764463|r 167 DAGADIIAPSEMMDGRVQEIRKKLDS---HGHINVGIMPYVAK 206 (337)
Q Consensus 167 ~AGaDivAPSdMMDGrV~aIR~~Ld~---~g~~~~~ImsYsaK 206 (337)
.-++=|+|+|.||+|- .+|..|.. +--..+.+.+|.+.
T Consensus 77 ~~p~IIiassgml~~G--~s~~~~~~~~~~~~n~ii~tgy~~~ 117 (124)
T pfam10996 77 GGPKVIIASSGMLTGG--RSRHHLKKLAPDPKNTVILTGYQAE 117 (124)
T ss_pred CCCEEEEECCCCCCCC--HHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 8984999578544777--7999999974999987999789989
No 247
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=37.07 E-value=35 Score=15.71 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
-++.+...+.++.+.+.|..++=|=-.-++. +.... +.+....+...++.+|+.. ++=|+.-+ -|+.
T Consensus 108 g~s~ee~~~~a~~~~~~gad~lElNls~~~~--~~~~~-~~~~~~~~~~iv~~Vk~~~-~~Pv~vKL--sP~~------- 174 (325)
T cd04739 108 GVSAGGWVDYARQIEEAGADALELNIYALPT--DPDIS-GAEVEQRYLDILRAVKSAV-TIPVAVKL--SPFF------- 174 (325)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCC-CCHHHHHHHHHHHHHHHCC-CCCEEEEC--CCCC-------
T ss_conf 8998999999999976499879996566788--85544-2106889999999998607-88669953--9983-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 1365446289999999999999962897352466
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSE 177 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSd 177 (337)
..+..+|....++|||-|.-..
T Consensus 175 ------------~di~~ia~aa~~~GAdgi~liN 196 (325)
T cd04739 175 ------------SALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred ------------CHHHHHHHHHHHCCCCEEEEEC
T ss_conf ------------0099999999975998899735
No 248
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=37.05 E-value=35 Score=15.71 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHH-HHC-CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--EECCCC
Q ss_conf 15765379999999997-301-44798613327100114310013654462899999999999999628973--524667
Q gi|255764463|r 103 IIDPDNLINEGICAIKK-NIP-NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI--IAPSEM 178 (337)
Q Consensus 103 A~n~dglv~rAIr~IK~-~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi--vAPSdM 178 (337)
+||+...+.++|+.|.+ .+| +...| ++.|+ -.|.|.+.+.+....++.-|.++ +-...-
T Consensus 9 a~NE~~~I~~~l~sl~~q~YP~~~~~I---------------~VvDd--stD~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (232)
T cd06437 9 VFNEKYVVERLIEAACALDYPKDRLEI---------------QVLDD--STDETVRLAREIVEEYAAQGVNIKHVRRADR 71 (232)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEE---------------EEEEC--CCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 589889999999999967999980899---------------99979--9966999999999766641996899836988
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 677999999999877885
Q gi|255764463|r 179 MDGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 179 MDGrV~aIR~~Ld~~g~~ 196 (337)
.-|..+++..+|......
T Consensus 72 ~g~Ka~aln~gl~~a~gd 89 (232)
T cd06437 72 TGYKAGALAEGMKVAKGE 89 (232)
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 886699999999977898
No 249
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155 Two different types of thiolase , , are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=36.78 E-value=13 Score=18.61 Aligned_cols=135 Identities=24% Similarity=0.289 Sum_probs=85.8
Q ss_pred CCCCEEECCCCCCCCCCCHHHH----HHHHHHHHHCCCCEEEEEECCCCCCCC--CCCC----CCCCCC-----CHHHHH
Q ss_conf 8988110488878632889999----999999998889367633025633455--4454----215765-----379999
Q gi|255764463|r 49 GEKTVESINSMPDVMRMSIDVA----VEKIKQVADLGIPAIAIFPNIPMDLRN--NTGS----HIIDPD-----NLINEG 113 (337)
Q Consensus 49 g~~~k~~I~SMPGv~R~Sid~L----~~eie~~~~lGI~av~LFp~I~~~~Kd--~~Gs----eA~n~d-----glv~rA 113 (337)
|... |.+.-..+|.|--.|+. -+...++++.|-=.=-+||+.-...|. +.|. .-++.| +.-...
T Consensus 180 G~tA-E~~A~~~~I~R~~qDe~A~~Sh~~Aa~A~~~G~f~~Ei~P~~~~~~~~~~~~G~~~~~~~~~~De~iRp~~t~e~ 258 (447)
T TIGR01930 180 GQTA-ENLAKKYGISREEQDEYALRSHQRAAKAWEEGRFKDEIVPVTVKGRKGKPESGLMEKPVVVSTDEGIRPNTTLEK 258 (447)
T ss_pred CHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
T ss_conf 0579-999887488888999999999999999997045211113335524778885675245625730677588887787
Q ss_pred HHHHHHHHCCCE----EEECCCCCHHHCCCCCCCCCCC----CCCHHHHHHHHHH--HH----HHHHHCCCCEEEC-CCC
Q ss_conf 999997301447----9861332710011431001365----4462899999999--99----9999628973524-667
Q gi|255764463|r 114 ICAIKKNIPNIG----IITDVALDPFTIHGHDGILCDG----EIVNDETIELISH--AA----VIQADAGADIIAP-SEM 178 (337)
Q Consensus 114 Ir~IK~~fpdl~----vi~DVcLc~YT~hGHcGi~~~g----~IdND~Tl~~L~k--~A----l~~A~AGaDivAP-SdM 178 (337)
+.++|-.|.+-. ++| =|=+.=+.|| -|-+.+.++.|.. -- ++++.+|+| | ++|
T Consensus 259 La~L~P~F~~~g~~G~TvT---------AGNss~~nDGA~a~~lmSe~~a~~lGL~~~PlA~i~~~~~~G~d---P~~~m 326 (447)
T TIGR01930 259 LAKLKPAFKEEGPDGTTVT---------AGNSSPLNDGAAALLLMSEEKAKELGLNKTPLARIVSFAVAGVD---PVEIM 326 (447)
T ss_pred HCCCCCCCCCCCCCCCEEE---------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCC---HHHHH
T ss_conf 3287864367867987687---------32333212356425665079999808899426899410333057---48861
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 677999999999877885
Q gi|255764463|r 179 MDGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 179 MDGrV~aIR~~Ld~~g~~ 196 (337)
-=|=+.||+++|+++|.+
T Consensus 327 g~GP~~A~~~aL~kaGL~ 344 (447)
T TIGR01930 327 GLGPVPAIPKALKKAGLS 344 (447)
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 677588999999984987
No 250
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405 A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=36.74 E-value=21 Score=17.15 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEC---CCCCCCHHHHHHHHHHHCC-------CCCCCEE
Q ss_conf 999999999999628973524---6676779999999998778-------8577300
Q gi|255764463|r 155 IELISHAAVIQADAGADIIAP---SEMMDGRVQEIRKKLDSHG-------HINVGIM 201 (337)
Q Consensus 155 l~~L~k~Al~~A~AGaDivAP---SdMMDGrV~aIR~~Ld~~g-------~~~~~Im 201 (337)
|..-.++|..+-+.|-.+++= |+=|.--=+.||+.||++| +++|-|.
T Consensus 264 ~~nai~va~eLg~~~~~~~gVRiDSGDL~~LSk~~R~~LD~AGaqfqvPWL~~vkI~ 320 (523)
T TIGR01513 264 LPNAIAVAKELGEQGKEVVGVRIDSGDLAYLSKKVRKELDEAGAQFQVPWLEEVKIV 320 (523)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHCHHCCCCCHHCCEEE
T ss_conf 999999999975205505889961177999999999999861111158600375489
No 251
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=36.72 E-value=35 Score=15.68 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=5.8
Q ss_pred HCCCCEEEEEEC
Q ss_conf 888936763302
Q gi|255764463|r 79 DLGIPAIAIFPN 90 (337)
Q Consensus 79 ~lGI~av~LFp~ 90 (337)
+++.+.|+|+|.
T Consensus 69 ~vk~~~ivlYPy 80 (613)
T PRK03991 69 KVKAENIVLYPY 80 (613)
T ss_pred HCCCCEEEEECC
T ss_conf 559877999451
No 252
>pfam08029 HisG_C HisG, C-terminal domain.
Probab=36.69 E-value=35 Score=15.67 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 89999999999977269999820
Q gi|255764463|r 303 KNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 303 ~~~~~~E~l~~~kRAGAd~IitY 325 (337)
.++.+.|.+--+|++||..|+-|
T Consensus 46 ~~~~~~~~~~~Lk~~GA~~Ilv~ 68 (73)
T pfam08029 46 PEKEVWEIMDELKALGASGILVL 68 (73)
T ss_pred EHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 27899999999998799779996
No 253
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=36.58 E-value=13 Score=18.57 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred HHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf 99962897352466767799999999987788--57730033666435
Q gi|255764463|r 164 IQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS 209 (337)
Q Consensus 164 ~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS 209 (337)
.++.+|.| |..|-.|-+.+|+++|+.+|. .|+-+.---==||+
T Consensus 275 ~~~~~g~d---P~~m~~~p~~A~~k~L~~agl~~~Did~~EinEAFA~ 319 (390)
T PRK06504 275 HMTVTGGD---PVIMLEAPLPATERALKKAGMKIDDIDLYEVNEAFAS 319 (390)
T ss_pred CCEEEECC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
T ss_conf 30375268---7887243999999999985998113885451035588
No 254
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=36.41 E-value=35 Score=15.64 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 9999999999988893676330256334----554454215765379999999997301447986133271001143100
Q gi|255764463|r 68 DVAVEKIKQVADLGIPAIAIFPNIPMDL----RNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 68 d~L~~eie~~~~lGI~av~LFp~I~~~~----Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
....+.++.+.+.+++-|.+..++|... --..|..-+..-+-+..|.+.++ .-+|.+|. --+-.=||+|-
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~~G~p~~~~v~~~~~~G~~v~~~v~s~~~A~~a~~-~G~D~iV~-----qG~eAGGH~G~ 174 (330)
T pfam03060 101 PDYGDDDDSLKDAKPKVVSFGFGLPPEDVIERLKESGTKVIPTVSSAKEARKAEA-AGADAVVA-----QGPEAGGHRGT 174 (330)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEE-----ECCCCCCCCCC
T ss_conf 8379999999974999999899898279999999879989998189999999998-19998999-----66766777888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 13654462899999999999999628973524667677999
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ 184 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~ 184 (337)
-. ...| -.|..+.. ..-..-+||--..+|||=-
T Consensus 175 ~~-----~~~~-~~L~~~v~--~~~~iPvIaAGGI~dg~~i 207 (330)
T pfam03060 175 EV-----GTGT-FLLVPTVV--DAVDIPVIAAGGIADGRGI 207 (330)
T ss_pred CC-----CCCH-HHHHHHHH--HHCCCCEEEECCCCCHHHH
T ss_conf 77-----7307-77789999--8716977852662899999
No 255
>KOG0478 consensus
Probab=36.21 E-value=25 Score=16.70 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=56.2
Q ss_pred EECCCCCCCCCCCHHHHHHHHH--HHHHCCCCEEEEEECCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHH
Q ss_conf 1048887863288999999999--99988893676330256334554454215----------76537999999999730
Q gi|255764463|r 54 ESINSMPDVMRMSIDVAVEKIK--QVADLGIPAIAIFPNIPMDLRNNTGSHII----------DPDNLINEGICAIKKNI 121 (337)
Q Consensus 54 ~~I~SMPGv~R~Sid~L~~eie--~~~~lGI~av~LFp~I~~~~Kd~~GseA~----------n~dglv~rAIr~IK~~f 121 (337)
+++..=|.+|-.=..++..+|- ++.++|+=. .||++.. +.++.+- -| +|--=-.+-++-+-+-.
T Consensus 411 ~elskrpdiy~lLa~SiAPsIye~edvKkglLL-qLfGGt~--k~~~~~~-~~R~~INILL~GDPGtsKSqlLqyv~~l~ 486 (804)
T KOG0478 411 QELSKRPDIYELLARSIAPSIYELEDVKKGLLL-QLFGGTR--KEDEKSG-RFRGDINILLVGDPGTSKSQLLQYCHRLL 486 (804)
T ss_pred HHHHCCCCHHHHHHHHHCHHHHCCCCHHHHHHH-HHHCCCC--CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 987628509999988506565344226666778-8756876--3223344-42455228994699867899999999747
Q ss_pred C-----------CCEEEECCCCCHH-------------HCCCCCCCCCCCCC-CHHHH--HHHHHHHHHHHHHCCC
Q ss_conf 1-----------4479861332710-------------01143100136544-62899--9999999999996289
Q gi|255764463|r 122 P-----------NIGIITDVALDPF-------------TIHGHDGILCDGEI-VNDET--IELISHAAVIQADAGA 170 (337)
Q Consensus 122 p-----------dl~vi~DVcLc~Y-------------T~hGHcGi~~~g~I-dND~T--l~~L~k~Al~~A~AGa 170 (337)
| ..++-+=|.-||= .+.|||+|=+=++. |+-.+ ++.+-.|-|+.|+||.
T Consensus 487 pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGI 562 (804)
T KOG0478 487 PRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGI 562 (804)
T ss_pred CCCEEECCCCCCHHCCEEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 7540405876302200356776576554665048489728965771123333277889999999876311743022
No 256
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=36.19 E-value=36 Score=15.62 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE-EECCCCCCCHHHHHHHHH
Q ss_conf 9999999730144798613327100114310013654462899999999999999628973-524667677999999999
Q gi|255764463|r 112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI-IAPSEMMDGRVQEIRKKL 190 (337)
Q Consensus 112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi-vAPSdMMDGrV~aIR~~L 190 (337)
..++.||..+|++-|+. +|.|.. +. +... .-++||+- |.-++-.+-=+.|||...
T Consensus 69 ~~~~~i~~~~p~~~viv------ls~~~~-----------~~----~v~~---al~~Ga~Gyl~K~~~~~~L~~AI~~v~ 124 (216)
T PRK10840 69 TLIKYIKRHFPSLSIIV------LTMNNN-----------PA----ILSA---VLDLDIEGIVLKQGAPTDLPKALAALQ 124 (216)
T ss_pred HHHHHHHHHCCCCEEEE------EECCCC-----------HH----HHHH---HHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 99999998589980899------847787-----------89----9999---985897489987899999999999998
Q ss_pred HHC
Q ss_conf 877
Q gi|255764463|r 191 DSH 193 (337)
Q Consensus 191 d~~ 193 (337)
...
T Consensus 125 ~G~ 127 (216)
T PRK10840 125 KGK 127 (216)
T ss_pred CCC
T ss_conf 799
No 257
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=36.01 E-value=36 Score=15.60 Aligned_cols=231 Identities=18% Similarity=0.162 Sum_probs=114.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-------CCCCC--------------------CCCCHHHHHH
Q ss_conf 63288999999999999888936763302563345544-------54215--------------------7653799999
Q gi|255764463|r 62 VMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNT-------GSHII--------------------DPDNLINEGI 114 (337)
Q Consensus 62 v~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~-------GseA~--------------------n~dglv~rAI 114 (337)
-+-+|+|++.+.++++.+.|++-+++=++..+++.-+. |-.++ |...+....+
T Consensus 38 a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~~~~~~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el 117 (336)
T PRK06245 38 ASLLSPEEVREILERGQDAGCTEALFTFGEVPDESEEIREQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEM 117 (336)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 68779999999999999769839998057886636899999997075507788999858887636552236676789999
Q ss_pred HHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCHH----------
Q ss_conf 9999730144798613327100114310013654462899999999999999628-97352466767799----------
Q gi|255764463|r 115 CAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG-ADIIAPSEMMDGRV---------- 183 (337)
Q Consensus 115 r~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG-aDivAPSdMMDGrV---------- 183 (337)
+.+|+.-..++.|....-.-..+.+|.+ .-+++ +-..|.-+ ..|| .-|=--+.||=|.+
T Consensus 118 ~~Lk~v~asmG~mlE~~se~l~~~~h~~--~P~K~----~~~rL~~i----e~Ah~lgIptTatmL~G~gET~eeRi~hL 187 (336)
T PRK06245 118 EALKPVNASMGLMLEQTSPRLLETVHRH--SPGKD----PELRLETI----EWAGELKIPFTTGLLIGIGETWEDRIESL 187 (336)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCC--CCCCC----HHHHHHHH----HHHHHCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 9875359766757123568988763044--89878----89999999----99998399722024520669999999999
Q ss_pred HHHHHHHHHCC-CCCCCEECHHHHHHHHHH-CC---H----HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999998778-857730033666435430-10---1----675310244677774431572114788988887664089
Q gi|255764463|r 184 QEIRKKLDSHG-HINVGIMPYVAKFNSSFY-GP---Y----RDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 (337)
Q Consensus 184 ~aIR~~Ld~~g-~~~~~ImsYsaKfaS~fY-gP---F----RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA 254 (337)
.+||+.=|+.| |+.+.++++..|-...+- .| . |--|=|.--+ .+--+-|.+| |-...+.. +-+.-||
T Consensus 188 ~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~~~~~~e~l~~iAvARiiL-~~~i~IQapp-nL~~~~~~--~~L~~Ga 263 (336)
T PRK06245 188 EAIAELHERYGHIQEVIIQNFRPKPGIPMENHPEPSPEEMPRVVALARLIL-PPDISIQVPP-NLVDDTGL--LFLEAGA 263 (336)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEEEECC-CCCCHHHH--HHHHCCC
T ss_conf 999998863497579950687789875334699979999999999999966-9985797698-67855789--9986787
Q ss_pred C---------EEEECCCHHH--HHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 8---------7995531145--8999999962499-899993461899999999888978899999999999
Q gi|255764463|r 255 D---------MLLVKPGLPY--LDVCFRIKEKFGL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 (337)
Q Consensus 255 D---------~lMVKPa~~y--LDii~~~k~~~~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~ 314 (337)
| .=-|.|--|+ +|-++++-+.... .+----|--+| ...||++.+ +.+.+...
T Consensus 264 nDlGGisp~t~d~vnpe~~wp~~~~l~~~~~~~g~~l~~Rl~vyp~~------~~~~w~~~~--~~~~~~~~ 327 (336)
T PRK06245 264 DDLGGISPVTKDEVNPEYPWPDIDELKEILEEAGWQLKERLPVYPKY------VKEGWLSPR--LQEKIERL 327 (336)
T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH------HCCCCCCHH--HHHHHHHH
T ss_conf 66788775766601889999899999999997599656436888667------515766989--99999986
No 258
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.89 E-value=36 Score=15.59 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC
Q ss_conf 99999999999988893676330256334554454215765379999999997301447986133271001143100136
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD 146 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~ 146 (337)
+..-++.++...+.|+.-+.+-- ++.. + .....-...|+.|.+.. ..|.| -.
T Consensus 29 ~gdP~~~ak~f~~~GadelhivD-ld~a-~--------~g~~~n~~~I~~I~~~~----------~ipi~--------vG 80 (253)
T PRK01033 29 VGDPINAVRIFNEKEADELIVLD-IDAS-R--------KGREPNYELIENLASEC----------FMPLC--------YG 80 (253)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEE-CCCC-C--------CCCCCHHHHHHHHHHHC----------CCCEE--------EE
T ss_conf 88999999999987999899994-7454-2--------48801699999999876----------99889--------86
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH--HCCCC
Q ss_conf 5446289999999999999962897352466767799999999987788577300336664354301016753--10244
Q gi|255764463|r 147 GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI--STRDL 224 (337)
Q Consensus 147 g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~--~S~p~ 224 (337)
|-|.+-++++ .+-++|||=|.-+..-=---..+++.. .-||+=+=.+ +..
T Consensus 81 GGIrs~e~~~-------~ll~~GadkViigs~a~~~p~~i~~~~-------------------~~fG~q~IvvsiD~k-- 132 (253)
T PRK01033 81 GGIKTVEQAK-------RIFSLGVEKVSISTAALEDPKLITEAA-------------------EIYGSQSVVVSIDVK-- 132 (253)
T ss_pred CCCCCHHHHH-------HHHHCCCCEEEECCHHHHCCHHHHHHH-------------------HHCCCCCEEEEEEEE--
T ss_conf 8812168889-------998679866999987863741657899-------------------877997699999982--
Q ss_pred CCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCEEEEC----C---CHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 6777744315721--------14788988887664089879955----3---1145899999996249989999346189
Q gi|255764463|r 225 LKGDKKTYYLDPA--------NVQEAIREASIDIQESADMLLVK----P---GLPYLDVCFRIKEKFGLPTFAYQVSGEY 289 (337)
Q Consensus 225 ~~gdr~sYQmd~~--------n~~eA~~e~~~D~~EGAD~lMVK----P---a~~yLDii~~~k~~~~~P~~aYqVSGEY 289 (337)
++.-..|+.=.. +..+.+.+ -.+.|+.-+++- - ..+-+++++++++.+++|+.| ||
T Consensus 133 -~~~~~~~~v~~~g~~~~t~~~~~~~~~~---~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~~~ipiIa---sG-- 203 (253)
T PRK01033 133 -KRLFGRYDVYTHNGTKKTGLDPVEFAKQ---AEELGAGEIVLNSIDRDGVMKGYDLELIKKISSAVKIPVTA---LG-- 203 (253)
T ss_pred -CCCCCCEEEEEECCCCCCCCCHHHHHHH---HHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC--
T ss_conf -4877834789867953678558999999---87469779999878488976687999999999878999999---78--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9999999888978899999999999772699998
Q gi|255764463|r 290 AMIKAASLQGWINKNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 290 ami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Ii 323 (337)
|.-+.++. . ..|+..|++.++
T Consensus 204 ---------Gi~s~~di-~---~l~~~~~v~gv~ 224 (253)
T PRK01033 204 ---------GAGSLDDI-A---DLIQEAGASAAA 224 (253)
T ss_pred ---------CCCCHHHH-H---HHHHHCCCEEEE
T ss_conf ---------98999999-9---999867973997
No 259
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=35.80 E-value=36 Score=15.58 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=6.3
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999730144
Q gi|255764463|r 113 GICAIKKNIPNI 124 (337)
Q Consensus 113 AIr~IK~~fpdl 124 (337)
.++.+|+..|++
T Consensus 67 lL~~l~~~~p~~ 78 (441)
T PRK10365 67 TLKEIKALNPAI 78 (441)
T ss_pred HHHHHHHHCCCC
T ss_conf 999998429898
No 260
>pfam09043 Lys-AminoMut_A D-Lysine 5,6-aminomutase alpha subunit. Members of his family are involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state.
Probab=35.78 E-value=29 Score=16.21 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=21.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 013654462899999999999999628973524
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
|+..|.|--|. -||..-|++||||||-
T Consensus 152 IVATGnIYeDv------~QAqAAarqGADiIAV 178 (509)
T pfam09043 152 IVATGNIYEDV------VQAQAAARQGADVIAV 178 (509)
T ss_pred EEEECCCHHHH------HHHHHHHHCCCCEEEE
T ss_conf 98307513018------9999999758988975
No 261
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=35.71 E-value=36 Score=15.57 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=53.5
Q ss_pred CCCCHHH--HHHHHHHHCCCCCC-CEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7677999--99999987788577-30033666435430101675310244677774431572114788988887664089
Q gi|255764463|r 178 MMDGRVQ--EIRKKLDSHGHINV-GIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 (337)
Q Consensus 178 MMDGrV~--aIR~~Ld~~g~~~~-~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA 254 (337)
=||-|=. ..|+.++..|+... .||+.. --+.+-+ +...-.+ ..-..-++..++.|.++.-....-=-.
T Consensus 233 GmDQRKi~mLARey~~~~~~k~kpiil~h~--mlpGL~~------g~~KMSk-Sdp~saI~m~Ds~e~V~kKIkkAyCpp 303 (399)
T PTZ00126 233 GMDQRKVNMLAREYCDLKKIKKKPIILSHH--MLPGLLE------GQEKMSK-SDPNSAIFMEDSAEEVNRKIKKAYCPP 303 (399)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEECC--CCCCCCC------CCCCCCC-CCCCCEEEECCCHHHHHHHHHHCCCCC
T ss_conf 601999999999987652887786798577--7765566------8765666-898772120189999999998456999
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCE-EEEECC-----------HHHHHHHHHHHCCCCC---HHHHHHHHHHHHH
Q ss_conf 87995531145899999996249989-999346-----------1899999999888978---8999999999997
Q gi|255764463|r 255 DMLLVKPGLPYLDVCFRIKEKFGLPT-FAYQVS-----------GEYAMIKAASLQGWIN---KNDAMMESLLAFK 315 (337)
Q Consensus 255 D~lMVKPa~~yLDii~~~k~~~~~P~-~aYqVS-----------GEYami~~a~~~g~~d---~~~~~~E~l~~~k 315 (337)
.. --+-|-|++++-+- +|. ..+.|. -.|.-+.++-.+|-+. .+.++-+.|..+-
T Consensus 304 ~~---ve~NPvLe~~kyvI----fP~~~~f~V~R~ek~GG~~ty~s~eeLe~dy~~g~LHP~DLK~ava~~Ln~iL 372 (399)
T PTZ00126 304 GV---IEGNPIIAYFKSIV----FPKFNSFTIERKEKNGGDVTYNTYEELEADYLSGALHPADLKPALAKYLNLML 372 (399)
T ss_pred CC---CCCCCHHHHHHHHC----CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88---68783999988732----04578358856755588771558999999997599898999999999999999
No 262
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=35.62 E-value=7.8 Score=20.09 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=32.0
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf 999962897352466767799999999987788--57730033666435
Q gi|255764463|r 163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS 209 (337)
Q Consensus 163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS 209 (337)
+.++.+|+| |..|..|-|.||+++|+.+|. .|+-+.----=||+
T Consensus 301 ~~~~~~g~d---P~~mg~gPv~Ai~~~L~r~gl~~~Did~~EiNEAFA~ 346 (417)
T PRK06025 301 VAMANMGDD---PTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAV 346 (417)
T ss_pred EEEEEEECC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
T ss_conf 877788628---8887146899999999876997135777886067899
No 263
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=35.51 E-value=8.6 Score=19.80 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf 999962897352466767799999999987788--577300336664354
Q gi|255764463|r 163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS 210 (337)
Q Consensus 163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~ 210 (337)
+.++.+|+| |..|-.|-|.||+++|+..|. .|+-+.----=||+.
T Consensus 276 ~~~a~~g~d---P~~m~~~Pv~A~~~~L~ragl~~~Did~~EinEAFA~q 322 (392)
T PRK07108 276 RGFAVAGCE---PDEMGIGPVFAVPKLLKQAGLKVDDIDLWELNEAFAVQ 322 (392)
T ss_pred EEEEEEEEC---HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHH
T ss_conf 954688708---78860459999999999759973357734640577888
No 264
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=35.43 E-value=37 Score=15.54 Aligned_cols=220 Identities=18% Similarity=0.176 Sum_probs=103.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 86328899999999999988893676330256334554454215765---379999999997301447986133271001
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD---NLINEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d---glv~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
|-..++.+.+++.++++++.|..-+=+ |+ ++ +--|..-..++ .-+--.|+.||++| ++.|=.| .|..
T Consensus 17 gg~~~~~~~a~~~a~~~i~~GAdiIDI-Ga--eS--TrPg~~~is~~eE~~Rl~pvi~~l~~~~-~~~iSID----T~~~ 86 (257)
T cd00739 17 GGRFLSLDKAVAHAEKMIAEGADIIDI-GG--ES--TRPGADPVSVEEELERVIPVLEALRGEL-DVLISVD----TFRA 86 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEE-CC--CC--CCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEE----CCCH
T ss_conf 985889999999999999879989997-98--75--8999986998888988999999998607-9828997----9975
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-CCCCC-CCH-HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf 1431001365446289999999999999962897352-46676-779-99999999877885773003366643543010
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIA-PSEMM-DGR-VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-PSdMM-DGr-V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337)
+.|-.--++|+|+|- =|.-. |.. ...+.+ .+. .+.+| |+-
T Consensus 87 ----------------------~Va~~al~~Ga~iINDisg~~~d~~m~~~va~----~~~-~~ilm-H~~--------- 129 (257)
T cd00739 87 ----------------------EVARAALEAGADIINDVSGGSDDPAMLEVAAE----YGA-PLVLM-HMR--------- 129 (257)
T ss_pred ----------------------HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH----HCC-CEEEE-CCC---------
T ss_conf ----------------------99999998499899753424477789999998----499-99997-689---------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCC--CEEEECCCHH-------HHHHHHHHHH--HCCCCEEE
Q ss_conf 16753102446777744315721147889-88887664089--8799553114-------5899999996--24998999
Q gi|255764463|r 215 YRDAISTRDLLKGDKKTYYLDPANVQEAI-REASIDIQESA--DMLLVKPGLP-------YLDVCFRIKE--KFGLPTFA 282 (337)
Q Consensus 215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~-~e~~~D~~EGA--D~lMVKPa~~-------yLDii~~~k~--~~~~P~~a 282 (337)
..|.-.-+...|.=-...-..-+ .....=.+.|- +-+++-||+- .|.+++.+.. .++.|+.+
T Consensus 130 ------g~p~~m~~~~~~~dv~~~i~~~f~~~i~~l~~~Gi~~~~IiiDPG~GFgKt~~~n~~ll~~l~~f~~~~~PiLv 203 (257)
T cd00739 130 ------GTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPVLV 203 (257)
T ss_pred ------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf ------98422233786330999999999999999998799825199708878788879999999989999528998277
Q ss_pred EECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf 93461899999999888978899999999999772699998201899999985
Q gi|255764463|r 283 YQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILT 335 (337)
Q Consensus 283 YqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~ 335 (337)
= +|- =+||.......--+....-+.+-..--..||+++=+--.++..+-++
T Consensus 204 G-~SR-Ksfi~~~~~~~~~~rl~gTla~~~~~~~~Ga~ilRvHdV~et~~ai~ 254 (257)
T cd00739 204 G-ASR-KSFIGALLGREPKDRDWGTLALSALAAANGADIVRVHDVKATRDALK 254 (257)
T ss_pred E-CCH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 5-029-89999874999688428999999999987999999599899998986
No 265
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=35.36 E-value=26 Score=16.51 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCC--------CCCCCCHHH---HHHHHHHHH---HCCCE
Q ss_conf 863288999999999999-888936763302563345544542--------157653799---999999973---01447
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSH--------IIDPDNLIN---EGICAIKKN---IPNIG 125 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~Gse--------A~n~dglv~---rAIr~IK~~---fpdl~ 125 (337)
|-.-.|.|.+...++.+. +.||+.| |||.=.++ =+..... +-|++=+++ |-+|.=-.. |..|.
T Consensus 35 Gs~gVt~~~~~~~~~~~~e~~~~P~i-lfPsn~~~-~s~~~Da~f~~svlNS~~~~wI~GkhaqWvr~q~~~~~~~~~~~ 112 (242)
T TIGR01768 35 GSQGVTLDKLDQLIEALRERYGVPII-LFPSNLTN-VSRKADALFFPSVLNSDDPYWIIGKHAQWVRAQILAAPKFKKLG 112 (242)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCCCC-HHHCCCEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 77870368899999999740598379-84188742-11106768771143169976453425999999998789887653
Q ss_pred EEECCCCCHHHCCCCCCCCC---CCC-C-CHHHHHHHHHHHH-------HHHHHCCCCEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 98613327100114310013---654-4-6289999999999-------9999628973524667677999999999877
Q gi|255764463|r 126 IITDVALDPFTIHGHDGILC---DGE-I-VNDETIELISHAA-------VIQADAGADIIAPSEMMDGRVQEIRKKLDSH 193 (337)
Q Consensus 126 vi~DVcLc~YT~hGHcGi~~---~g~-I-dND~Tl~~L~k~A-------l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~ 193 (337)
=+-.+-.-.|--=||+|-.- +-+ + .+.+-+-.+..+| +.|-|||.- +|.-.-.--|..+|+.+|+.
T Consensus 113 ~~~E~~~~gY~iv~pgg~aa~v~~A~~~P~~k~~~Aa~~~~a~~~~g~~~~YLEagsg--ap~pvpPE~va~vk~v~~~a 190 (242)
T TIGR01768 113 ESLEIIPEGYIIVNPGGAAATVTKAKPIPYDKEDLAAYAALAEEMLGMPIIYLEAGSG--APEPVPPELVAEVKKVLDKA 190 (242)
T ss_pred HHHEEHHEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHCC
T ss_conf 1340012112787589955885023578877687999999999980996899963787--54797458999999874104
Q ss_pred CCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 88577300336664354301016753102446777744315721147889888876640-8987995
Q gi|255764463|r 194 GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLV 259 (337)
Q Consensus 194 g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMV 259 (337)
||..-..|-| .-|=|. +|..+-..| |||+|.|
T Consensus 191 GyGGe~~L~v---------------------GGGIRs-------------~E~A~~~a~AgAD~~Vt 223 (242)
T TIGR01768 191 GYGGEVKLIV---------------------GGGIRS-------------VEKARKLAEAGADVVVT 223 (242)
T ss_pred CCCCCEEEEE---------------------ECCCCC-------------HHHHHHHHHCCCCEEEE
T ss_conf 7886325784---------------------076478-------------89999995345989998
No 266
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase; InterPro: IPR011995 Orotidine 5'-phosphate decarboxylase (OMPdecase) , catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=35.34 E-value=37 Score=15.53 Aligned_cols=212 Identities=17% Similarity=0.143 Sum_probs=123.6
Q ss_pred CCCCCCCCCCCHH---------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCC
Q ss_conf 4888786328899---------99999999998889367633025633455445421576537--999999999730144
Q gi|255764463|r 56 INSMPDVMRMSID---------VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL--INEGICAIKKNIPNI 124 (337)
Q Consensus 56 I~SMPGv~R~Sid---------~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl--v~rAIr~IK~~fpdl 124 (337)
++.+|...+-+.. -+...+++++++==..+.+| ++.-- -=|.|.+.|+ ..+.|..+|..-|.+
T Consensus 24 ~~~l~~~~~~~~~~~~~~~~A~~~~~Fc~~iiDA~a~~~a~v-KPq~A-----FFE~~G~~G~~~L~evi~~~~~~GPq~ 97 (306)
T TIGR02127 24 LELLPEWVKESEARKKKESVAAGLAAFCKRIIDATAEYAAVV-KPQVA-----FFEAFGSEGFKALEEVIAHAKSAGPQL 97 (306)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-CCCCC-----HHHHCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 576225411142222244788999998899998642633144-04600-----111127678999999999974158942
Q ss_pred EEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 798613327100114310013654462899999999999999628-----973524667677999999999877885773
Q gi|255764463|r 125 GIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAG-----ADIIAPSEMMDGRVQEIRKKLDSHGHINVG 199 (337)
Q Consensus 125 ~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AG-----aDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ 199 (337)
.|++|+ +-| |.+.|-+.++|..+-++++| +|=|--|==|=. ++++..|+...-..-+
T Consensus 98 ~V~~D~--------------KRG--DIg~Ta~aYA~~~lg~~~~~~S~~~~DA~TvsPYlG~--dSL~Pfle~~~~~G~g 159 (306)
T TIGR02127 98 LVLADA--------------KRG--DIGSTAEAYAKAYLGHLKADDSPLEADALTVSPYLGL--DSLRPFLEVARANGAG 159 (306)
T ss_pred EEEECC--------------CCC--CHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHCC--HHHHHHHHHHHHHCCE
T ss_conf 688043--------------137--6777999999998336788988410102451300010--3311568989753896
Q ss_pred E--ECHHH---------HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEECCCHH--
Q ss_conf 0--03366---------643543010167531024467777443157211478898888766408--98799553114--
Q gi|255764463|r 200 I--MPYVA---------KFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES--ADMLLVKPGLP-- 264 (337)
Q Consensus 200 I--msYsa---------KfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG--AD~lMVKPa~~-- 264 (337)
| |--++ +=.+..-|-|-+.-||--+ ..||+=||.=. ..-..+-+...| ..| +++=.|==|..
T Consensus 160 iFvLv~TSN~~~~~~Q~~~~~~~qGtfGessGsils-Csgr~vy~~va-~~~~~~~~~~~d-~~gPY~~~G~VVGAT~P~ 236 (306)
T TIGR02127 160 IFVLVKTSNPGGADLQDLRVSDRQGTFGESSGSILS-CSGRTVYEEVA-ELAGELNESPGD-KSGPYGSVGAVVGATSPE 236 (306)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEE-CCCCHHHHHHH-HHHHHHHHCCCC-CCCCCCCEEEEEECCCHH
T ss_conf 999985168553788855540256643345563575-07746899999-999998631588-777852114686138868
Q ss_pred HHHHHHHHHH------H--CCCCEEEEECCHHHHHHHH
Q ss_conf 5899999996------2--4998999934618999999
Q gi|255764463|r 265 YLDVCFRIKE------K--FGLPTFAYQVSGEYAMIKA 294 (337)
Q Consensus 265 yLDii~~~k~------~--~~~P~~aYqVSGEYami~~ 294 (337)
=|+.++.-++ + +.+|=+-+|=-++-.-++.
T Consensus 237 ~l~~lr~~~nlsef~p~~~~LvPG~GAQGG~~~~dl~~ 274 (306)
T TIGR02127 237 DLKRLREERNLSEFMPTLPFLVPGFGAQGGAEAADLEA 274 (306)
T ss_pred HHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHH
T ss_conf 99998776434666257714217501138714899987
No 267
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=35.29 E-value=5.5 Score=21.11 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCCCHHHCCCCEE---EECC--CCCEEEC---CCCCC-CCCCCHH-------HHHHHHHHHHHCCCCEEEE
Q ss_conf 8899986347788877331166---6758--9881104---88878-6328899-------9999999999888936763
Q gi|255764463|r 24 NWIREMVREHRLSVSDLILPIF---LTSG--EKTVESI---NSMPD-VMRMSID-------VAVEKIKQVADLGIPAIAI 87 (337)
Q Consensus 24 ~~iR~Lv~Et~Ls~~dLI~PiF---V~eg--~~~k~~I---~SMPG-v~R~Sid-------~L~~eie~~~~lGI~av~L 87 (337)
..+|.++..+.|.+++.=.=+| +..+ .|.-..+ .+||. +--++++ ..+...-..+..|.-.+.|
T Consensus 28 ~ai~~al~~agl~~~~Id~vi~G~~~~~g~g~n~aR~~al~aGlp~~vp~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvl 107 (386)
T cd00751 28 AVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVV 107 (386)
T ss_pred HHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999849898999989999506666566399999997699988865888422168799999997411079977888
Q ss_pred EECCC
Q ss_conf 30256
Q gi|255764463|r 88 FPNIP 92 (337)
Q Consensus 88 Fp~I~ 92 (337)
=++++
T Consensus 108 a~GvE 112 (386)
T cd00751 108 AGGVE 112 (386)
T ss_pred EECCC
T ss_conf 72445
No 268
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase; InterPro: IPR004410 Malonyl CoA-acyl carrier protein transacylase 2.3.1.39 from EC is involved in fatty acid biosynthesis and transfers the malonyl moeity from coenzyme A to acyl-carrier protein.; GO: 0004314 [acyl-carrier-protein] S-malonyltransferase activity, 0006633 fatty acid biosynthetic process.
Probab=35.07 E-value=23 Score=16.93 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=12.3
Q ss_pred CCEEE-EECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 98999-9346189999999988897889999
Q gi|255764463|r 278 LPTFA-YQVSGEYAMIKAASLQGWINKNDAM 307 (337)
Q Consensus 278 ~P~~a-YqVSGEYami~~a~~~g~~d~~~~~ 307 (337)
.|.++ =|==|||+-|.+ +|.+|+++++
T Consensus 85 ~P~f~AGHSLGEYsAL~a---AGalDF~~al 112 (295)
T TIGR00128 85 KPDFVAGHSLGEYSALVA---AGALDFETAL 112 (295)
T ss_pred CCCEEECCCHHHHHHHHH---HHHHHHHHHH
T ss_conf 653462463478999998---5351488899
No 269
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=34.96 E-value=37 Score=15.49 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=21.6
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999988893676330256334554-4542157653799999999973014
Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPNIPMDLRNN-TGSHIIDPDNLINEGICAIKKNIPN 123 (337)
Q Consensus 71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~-~GseA~n~dglv~rAIr~IK~~fpd 123 (337)
++|+..+.+-|.--| +.|++ .|+-.. .-+..||+|++..|.
T Consensus 10 ~~EA~~a~~~GaDII--------DvKnP~~GaLGa----~~p~vi~~i~~~v~~ 51 (235)
T pfam04476 10 VEEALEAIEGGADII--------DVKNPAEGSLGA----NFPWVIREIRELTPK 51 (235)
T ss_pred HHHHHHHHHCCCCEE--------EECCCCCCCCCC----CCHHHHHHHHHHHCC
T ss_conf 999999986799989--------827988888889----999999999998567
No 270
>pfam02979 NHase_alpha Nitrile hydratase, alpha chain.
Probab=34.92 E-value=21 Score=17.14 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77999999999877885773003366643543010167531024467777443157211478898888766408987995
Q gi|255764463|r 180 DGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLV 259 (337)
Q Consensus 180 DGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMV 259 (337)
.-|+.|+++.|-+.|+.+..-+---..+-.+-.||..-|-=-+.+- -|-.--+.=..|...|++|.-.+..+|-.++.|
T Consensus 7 ~~r~~Ale~lLieKGli~~~~id~~ie~~e~~~gP~~GArvVArAW-~Dp~fk~~Ll~D~~aA~~elG~~g~~ge~l~vv 85 (189)
T pfam02979 7 AARVKALEELLIEKGLITPAAVDRIIETYETKVGPRNGARVVARAW-VDPEFKARLLADATAACAELGYDGRQGEHMVAV 85 (189)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCHHHHHHHHHCHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9999999999998599999999999999874249842388999986-699999999978899999849985655646998
Q ss_pred C
Q ss_conf 5
Q gi|255764463|r 260 K 260 (337)
Q Consensus 260 K 260 (337)
.
T Consensus 86 e 86 (189)
T pfam02979 86 E 86 (189)
T ss_pred E
T ss_conf 3
No 271
>pfam09447 Cnl2_NKP2 Cnl2/NKP2 family protein. This family includes the Cnl2 kinetochore protein.
Probab=34.85 E-value=9.4 Score=19.54 Aligned_cols=30 Identities=30% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 126655788858563128988999863477
Q gi|255764463|r 5 NAISHKICCHRRMRRNRKSNWIREMVREHR 34 (337)
Q Consensus 5 ~~is~~~~p~~R~RRlR~~~~iR~Lv~Et~ 34 (337)
+-||-.-|-...|||+|.++.+|.|.+|-.
T Consensus 18 ~iiSLe~F~~lFPr~~~s~P~Ir~lYreLq 47 (67)
T pfam09447 18 DIISLEQFTELFPRRVRSEPQIRTLYRELQ 47 (67)
T ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 131399999887433543708999999999
No 272
>PRK03705 glycogen debranching enzyme; Provisional
Probab=34.82 E-value=38 Score=15.48 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCCEEEECCCCCEEECCCCCCCCCCCHHHHHH--HHHHHHHCCCCEEEEEECCCCC----C----------------CC
Q ss_conf 331166675898811048887863288999999--9999998889367633025633----4----------------55
Q gi|255764463|r 40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVE--KIKQVADLGIPAIAIFPNIPMD----L----------------RN 97 (337)
Q Consensus 40 LI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~--eie~~~~lGI~av~LFp~I~~~----~----------------Kd 97 (337)
.||=+=|.+=.. .=++.|...|=+...|.. -++.+.+|||++|-|-|+-.-. . =-
T Consensus 152 IIYElHVRgFT~---~~p~vp~~~rGTy~gl~~~~~I~yLk~LGVT~VeLLPV~~f~~e~~~~~~gl~NyWGYdp~~yfa 228 (658)
T PRK03705 152 VIYEAHVKGLTY---LHPEIPVEIRGTYKALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA 228 (658)
T ss_pred EEEEEECCCCCC---CCCCCCHHHCCCHHHHCCHHHHHHHHHCCCCEEEEECCEECCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 799982245312---38998432055355433828889999809877999898666778502103776776766432567
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCH
Q ss_conf 4454215765379999999997301-447986133271
Q gi|255764463|r 98 NTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDP 134 (337)
Q Consensus 98 ~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~ 134 (337)
++|+.|-++++.+..-=..+|.--. .|.||-||-.-.
T Consensus 229 Pe~~Yas~p~~~~~Efk~mV~~lH~~GI~VIlDVVyNH 266 (658)
T PRK03705 229 LHPAYASSPETALDEFRDAVKALHKAGIEVILDIVLNH 266 (658)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 86534799861889999999999987998999751366
No 273
>PRK09051 beta-ketothiolase; Provisional
Probab=34.39 E-value=4 Score=22.04 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHCCC
Q ss_conf 466767799999999987788
Q gi|255764463|r 175 PSEMMDGRVQEIRKKLDSHGH 195 (337)
Q Consensus 175 PSdMMDGrV~aIR~~Ld~~g~ 195 (337)
|..|--|-+.+||++|+.+|.
T Consensus 287 p~~~~~~p~~A~~~~L~ragl 307 (394)
T PRK09051 287 PEYMGIGPVPATQKALERAGL 307 (394)
T ss_pred HHHHCCCHHHHHHHHHHHCCC
T ss_conf 677403899999999998399
No 274
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=34.39 E-value=7.6 Score=20.17 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 8786328899999----999999988893676330256334554454215765----37999999999730144798613
Q gi|255764463|r 59 MPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD----NLINEGICAIKKNIPNIGIITDV 130 (337)
Q Consensus 59 MPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d----glv~rAIr~IK~~fpdl~vi~DV 130 (337)
.=|+.|--.|... +...++++.|.=.=-+.|+.-+.+|.+. ..++.| ......+.++|-.|..-+.+
T Consensus 173 ~~gisRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvPv~~~~~~g~~--~~~~~De~~R~tt~e~La~L~p~f~~~Gtv--- 247 (400)
T PRK13359 173 DYNISRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDP--VVVSRDEHPRETTLEALAKLKGVVRPDGTV--- 247 (400)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCE--EEEECCCCCCCCCHHHHHCCCCCCCCCCCE---
T ss_conf 869899999999999999999987659840258867752677863--788068786667766663268753456856---
Q ss_pred CCCHHHCCCCCCCCCCCC----CCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCE
Q ss_conf 327100114310013654----4628999999999----9999962897352466767799999999987788--57730
Q gi|255764463|r 131 ALDPFTIHGHDGILCDGE----IVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGI 200 (337)
Q Consensus 131 cLc~YT~hGHcGi~~~g~----IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~I 200 (337)
+-|.+--+.||- +-+.+..+.|.-. -+.++.+|+| |..|--|-|.|+|++|+.+|. .|+-+
T Consensus 248 ------TAgNsS~~~DGAAavll~s~~~a~~~gl~p~ari~~~a~~g~d---P~~m~~gp~~A~~k~L~~agl~~~Did~ 318 (400)
T PRK13359 248 ------TAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVE---PRVMGIGPAPATQKLLARLGMTLDQFDV 318 (400)
T ss_pred ------ECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC---HHHHHHCHHHHHHHHHHHCCCCCCCCCE
T ss_conf ------3543785432678899865999998799805999988999828---7885336999999999976998456877
Q ss_pred ECHHHHHHHH
Q ss_conf 0336664354
Q gi|255764463|r 201 MPYVAKFNSS 210 (337)
Q Consensus 201 msYsaKfaS~ 210 (337)
.----=||+.
T Consensus 319 ~EinEAFA~q 328 (400)
T PRK13359 319 IELNEAFASQ 328 (400)
T ss_pred EEEEHHHHHH
T ss_conf 7860466888
No 275
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.25 E-value=38 Score=15.42 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=13.7
Q ss_pred HHCCCCEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 96289735246676779999999998778857
Q gi|255764463|r 166 ADAGADIIAPSEMMDGRVQEIRKKLDSHGHIN 197 (337)
Q Consensus 166 A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~ 197 (337)
..+|+|+|-.....+.-+..+|+ +.+.|+..
T Consensus 189 ~~~~pD~v~~~~~~~~~~~~~kq-~~~~G~~~ 219 (312)
T cd06346 189 AAGGPDALVVIGYPETGSGILRS-AYEQGLFD 219 (312)
T ss_pred HHCCCCEEEEECCCHHHHHHHHH-HHHCCCCC
T ss_conf 86699999994673479999999-99759999
No 276
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=34.22 E-value=38 Score=15.42 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 48887863288999999999999888936763302563345544542157653799999999973014479861332710
Q gi|255764463|r 56 INSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF 135 (337)
Q Consensus 56 I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y 135 (337)
++.-|.-|++.++.+.+.+.+...-+.+ ++|-.-| + +++|+- ++. ..++.|.+..+++.|+.|=|--+|
T Consensus 140 v~~~~~~f~~d~~~~~~~i~~~~~~~~k--lv~l~nP-N--NPTG~~-~~~-----~~l~~l~~~~~~~~vvvDEaY~ef 208 (369)
T PRK02610 140 VGRDPENFEIDLAAAQTAIEQTQNPPVR--VVFVVHP-N--SPTGNP-LTA-----AELEWLRSLPEDILVVIDEAYFEF 208 (369)
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCCE--EEEECCC-C--CCCCCC-CCH-----HHHHHHHHCCCCEEEEECCCEEEC
T ss_conf 4576436656989999999855598823--9997899-6--972656-799-----999999846997699833676021
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---EEECCCC
Q ss_conf 011431001365446289999999999999962897---3524667
Q gi|255764463|r 136 TIHGHDGILCDGEIVNDETIELISHAAVIQADAGAD---IIAPSEM 178 (337)
Q Consensus 136 T~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaD---ivAPSdM 178 (337)
+.+..-..+.+. .|= -++.-.+.+|+-||.- .||+.+-
T Consensus 209 ~~~s~~~~~~~~--~Nl---ivlrTfSK~~glaGlRlGy~ia~~~~ 249 (369)
T PRK02610 209 SQTTLVPELAQH--PNW---VILRTFSKAFRLAAHRVGYAIGHPEL 249 (369)
T ss_pred CCCCCCHHHHCC--CCE---EEEECCCHHHCCCCCCCEECCCCHHH
T ss_conf 555321024317--875---89852634406766551311179999
No 277
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=33.95 E-value=39 Score=15.39 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=18.5
Q ss_pred HHCCCCEEECCCCCCC-HHHHHHHHHHHCCCCCCCEEC
Q ss_conf 9628973524667677-999999999877885773003
Q gi|255764463|r 166 ADAGADIIAPSEMMDG-RVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 166 A~AGaDivAPSdMMDG-rV~aIR~~Ld~~g~~~~~Ims 202 (337)
++-|.|+||.|=-=-+ -|..+|+.|.+.|-.++.|-|
T Consensus 205 ~~~gvD~va~SFvR~~~DV~~~R~~L~~~G~~~~~IIa 242 (513)
T TIGR01064 205 VEQGVDFVAASFVRTAEDVEEVREVLEEKGGKDVKIIA 242 (513)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 87297889972788875699999999970889864887
No 278
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=33.86 E-value=39 Score=15.38 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 3455-445421576537999999999730144798613327100114310013654462899999999999999628973
Q gi|255764463|r 94 DLRN-NTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADI 172 (337)
Q Consensus 94 ~~Kd-~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDi 172 (337)
+-|. ---+=-.||+ +..+-++++|+.... =|++=. -.-+.-..|+|.+.-+||||-
T Consensus 133 hvK~G~G~~iG~dP~-l~~~vv~avK~~~d~-Pv~aKL---------------------sPNV~Di~eiA~a~eeaGaDG 189 (308)
T TIGR01037 133 HVKGGGGIEIGQDPE-LSADVVKAVKDKVDV-PVFAKL---------------------SPNVTDITEIAKAAEEAGADG 189 (308)
T ss_pred CCCCCCCCCCCCCHH-HHHHHHHHHHCCCCC-CEEEEC---------------------CCCHHHHHHHHHHHHHCCCCE
T ss_conf 434234655477877-999999998300078-657864---------------------865668999988875327761
Q ss_pred EECCCCCC-CHHHHHHHHHHHCCCCCCCEECH
Q ss_conf 52466767-79999999998778857730033
Q gi|255764463|r 173 IAPSEMMD-GRVQEIRKKLDSHGHINVGIMPY 203 (337)
Q Consensus 173 vAPSdMMD-GrV~aIR~~Ld~~g~~~~~ImsY 203 (337)
+.-+-..- |.=--|+ +.-||||=
T Consensus 190 lt~INTl~PGMkIDI~--------~~kPiLaN 213 (308)
T TIGR01037 190 LTLINTLRPGMKIDIK--------AKKPILAN 213 (308)
T ss_pred EEEEHHHHHHHHHHHH--------CCCCCCEE
T ss_conf 6400120346777342--------07870000
No 279
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.85 E-value=37 Score=15.56 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCCCCCEECHH---------HHHHHHHHCCHHHHH
Q ss_conf 9999999987788577300336---------664354301016753
Q gi|255764463|r 183 VQEIRKKLDSHGHINVGIMPYV---------AKFNSSFYGPYRDAI 219 (337)
Q Consensus 183 V~aIR~~Ld~~g~~~~~ImsYs---------aKfaS~fYgPFRdA~ 219 (337)
+.-+|++|+.+||.+|++.|-+ -||.-+|+=-|+-|+
T Consensus 90 i~~~rkaLk~aG~~~V~visLn~e~~~k~~G~~~~~~~~i~~~~ai 135 (420)
T COG3581 90 IELLRKALKDAGFRDVPVISLNSENLEKEPGFKFTVKFLIRLMLAI 135 (420)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999997599877579950565545788411462999999999
No 280
>PRK05211 consensus
Probab=33.82 E-value=39 Score=15.37 Aligned_cols=201 Identities=20% Similarity=0.198 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC
Q ss_conf 99999999999988893676330256334554454215765379999999997301447986133271001143100136
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD 146 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~ 146 (337)
+..-+..++...+.|..-+.+. -+...+ +....-...|+.|.+++ ..|.|- .
T Consensus 20 ~gDP~~~ak~~~~~gadelhiv-Dld~a~---------~g~~~n~~~I~~i~~~~----------~~Pl~v--------G 71 (248)
T PRK05211 20 IGDIVPLAKRYAEEGADELVFY-DITASS---------DGRVVDKSWVSRVAEVI----------DIPFCV--------A 71 (248)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE-ECCCCC---------CCCCCHHHHHHHHHHHC----------CCCEEE--------E
T ss_conf 7899999999998699989999-786776---------78721499999999767----------985896--------2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCC
Q ss_conf 54462899999999999999628973524667677999999999877885773003366643543010167531024467
Q gi|255764463|r 147 GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLK 226 (337)
Q Consensus 147 g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~ 226 (337)
|-|-+-++++ .+-++|||=|.-...-=-.-..+++....-|-+.+ +.|--+++ ....
T Consensus 72 GGIrs~~~i~-------~ll~~GadkViigs~a~~np~li~~~~~~fG~q~I-vvsiD~~~---------------~~~~ 128 (248)
T PRK05211 72 GGIKSVEDAR-------EILSFGADKISINSPALADPTLITRLADRFGVQCI-VVGIDSWF---------------DAET 128 (248)
T ss_pred CCCCCHHHHH-------HHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCCEE-EEEEEEEC---------------CCCC
T ss_conf 7801389999-------99987998899897676196189999985799369-99997102---------------5557
Q ss_pred CCCCCCCCCCC------HHHHHHHHHHHHHHCCCCEEEE----CCC---HHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 77744315721------1478898888766408987995----531---1458999999962499899993461899999
Q gi|255764463|r 227 GDKKTYYLDPA------NVQEAIREASIDIQESADMLLV----KPG---LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIK 293 (337)
Q Consensus 227 gdr~sYQmd~~------n~~eA~~e~~~D~~EGAD~lMV----KPa---~~yLDii~~~k~~~~~P~~aYqVSGEYami~ 293 (337)
+.-..|+..-. ...+.+--+..-++.||--+++ +-| .+-|++++.+++.+++|+.| ||
T Consensus 129 ~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~IdrDG~~~G~dl~l~~~i~~~~~iPvIa---sG------ 199 (248)
T PRK05211 129 GKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNMMNQDGVRNGYDLAQLKKVRAICHVPLIA---SG------ 199 (248)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE---EC------
T ss_conf 857999825865653047736999999999759866999898789972788999999999746999999---88------
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE--------CHHHHHHHHHHC
Q ss_conf 9998889788999999999997726999982--------018999999850
Q gi|255764463|r 294 AASLQGWINKNDAMMESLLAFKRAGCDGIFT--------YFAMEAARILTH 336 (337)
Q Consensus 294 ~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit--------Y~A~~~a~~L~~ 336 (337)
|.-+.++. .| .++-+|++.++. +--+++.++|++
T Consensus 200 -----Gv~s~~di-~~---~~~~~~~~gvi~gs~~~~~~i~l~e~k~~L~~ 241 (248)
T PRK05211 200 -----GAGTMEHF-LE---AFRDADVDGALAASVFHKQIINIGELKQYLAA 241 (248)
T ss_pred -----CCCCHHHH-HH---HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf -----88999999-99---99867984133048888899999999999998
No 281
>PRK10651 transcriptional regulator NarL; Provisional
Probab=33.79 E-value=39 Score=15.37 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC-----CCC----CCCCHHHHHHHHHHHHHHHHHCCCCE-EECCCCCCC
Q ss_conf 99999997301447986133271001143100-----136----54462899999999999999628973-524667677
Q gi|255764463|r 112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGI-----LCD----GEIVNDETIELISHAAVIQADAGADI-IAPSEMMDG 181 (337)
Q Consensus 112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi-----~~~----g~IdND~Tl~~L~k~Al~~A~AGaDi-vAPSdMMDG 181 (337)
.++..++..-||++|+ |+.|-. -+|+ ++. ..|.- -|-..-.......-++||+- |.=+.-.+-
T Consensus 43 ea~~~~~~~~pDlvll-Dl~lp~-----~~G~~~~~~l~~~~~~~~iiv-lt~~~~~~~~~~al~~Ga~gyl~K~~~~~~ 115 (216)
T PRK10651 43 QGIELAESLDPDLILL-DLNMPG-----MNGLETLDKLREKSLSGRIVV-FSVSNHEEDVVTALKRGADGYLLKDMEPED 115 (216)
T ss_pred HHHHHHHHCCCCEEEE-ECCCCC-----CCCCCCCCCCCCCCCCCCEEE-EECCCCHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999987079999999-599999-----888764232334578874676-305541889999996698789837899999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999987788
Q gi|255764463|r 182 RVQEIRKKLDSHGH 195 (337)
Q Consensus 182 rV~aIR~~Ld~~g~ 195 (337)
-+.+||.++...-+
T Consensus 116 L~~ai~~v~~g~~~ 129 (216)
T PRK10651 116 LLKALHQAAAGEMV 129 (216)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999859971
No 282
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=33.62 E-value=16 Score=18.08 Aligned_cols=192 Identities=19% Similarity=0.237 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEE-----EECCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 999999999999888936763-----30256334554454-----21576537999999999730144798613327100
Q gi|255764463|r 67 IDVAVEKIKQVADLGIPAIAI-----FPNIPMDLRNNTGS-----HIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 (337)
Q Consensus 67 id~L~~eie~~~~lGI~av~L-----Fp~I~~~~Kd~~Gs-----eA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT 136 (337)
....-++.+.+.+.||..|-| +|.-+ ..+.+.++ |-.+=-| +..+|+--+++++..|++|.. -|
T Consensus 77 ~r~~~~h~~~l~e~~I~~iDlVvvNLYPF~~-tv~~~~~~~~e~vEnIDIGG--ptmlRaAAKN~~~V~V~~dp~--Dy- 150 (515)
T COG0138 77 RRDKDEHMAALEEHGIEPIDLVVVNLYPFEE-TVAKPGVTLEEAVENIDIGG--PTMLRAAAKNHKDVTVVVDPA--DY- 150 (515)
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEECCCCHHH-HCCCCCCCHHHHHHCCCCCC--HHHHHHHHHCCCCEEEEECCH--HH-
T ss_conf 0365778999997598775479984798254-21679998898875655676--177687663258705986601--46-
Q ss_pred CCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH---CCCCCC--------CEEC
Q ss_conf 114310013---65446289999999999999962897352466767799999999987---788577--------3003
Q gi|255764463|r 137 IHGHDGILC---DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS---HGHINV--------GIMP 202 (337)
Q Consensus 137 ~hGHcGi~~---~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~---~g~~~~--------~Ims 202 (337)
..++. .+.-+..++-..|+--|-.|-.+ -| .+|++-|-. ..|... .-|-
T Consensus 151 ----~~vl~~l~~~~~~~~~~R~~lA~kaF~hTA~----------YD---aaI~~~~~~~~~~~fp~~~~~~~~~~~~lR 213 (515)
T COG0138 151 ----AAVLEELKANGELSLATRKRLAAKAFEHTAA----------YD---AAIANYFSELLGGEFPEQLNLSFTKKQDLR 213 (515)
T ss_pred ----HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH----------HH---HHHHHHHHHHCCCCCCHHEECCCCCCEEEE
T ss_conf ----8999998547887789999999999998766----------69---999999975311336411102432000100
Q ss_pred HHHHH--HHHHHC--CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCHHH-----HHHHHHH
Q ss_conf 36664--354301--016753102446777744315721147889888876640-8987995531145-----8999999
Q gi|255764463|r 203 YVAKF--NSSFYG--PYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLVKPGLPY-----LDVCFRI 272 (337)
Q Consensus 203 YsaKf--aS~fYg--PFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~y-----LDii~~~ 272 (337)
|.--- ..+||- ...-.+-.+.+++|---||- |+.. -+|-.+...+.++ |.-.+.||-+-|+ -++...-
T Consensus 214 YGENPHQ~aa~Y~~~~~~~~va~a~qL~GK~lSYN-Ni~D-aDaA~~~v~ef~~~~pa~~ivKH~NPcGvA~~~~i~~Ay 291 (515)
T COG0138 214 YGENPHQSAAFYRDGNAKGGVATAKQLQGKELSYN-NIAD-ADAAWELVKEFDEPGPACAIVKHANPCGVAVGDTIAEAY 291 (515)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCC-CHHH-HHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCHHHHHHH
T ss_conf 57897778747841787876034787559725425-2553-799999998557767618998437874010280599999
Q ss_pred HHHC-CCCEEEE
Q ss_conf 9624-9989999
Q gi|255764463|r 273 KEKF-GLPTFAY 283 (337)
Q Consensus 273 k~~~-~~P~~aY 283 (337)
+..+ .=|+-+|
T Consensus 292 ~~A~~~D~~SaF 303 (515)
T COG0138 292 KRAYEADPTSAF 303 (515)
T ss_pred HHHHCCCCCCCC
T ss_conf 999707972234
No 283
>PRK00035 hemH ferrochelatase; Reviewed
Probab=33.59 E-value=31 Score=16.05 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 328899999999999988893676330256334554454
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS 101 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs 101 (337)
+||+--.+.+.++++.+.|+..+++||--|.......||
T Consensus 99 mry~~P~i~~~l~~l~~~g~~~ii~lPlyPqyS~sTtgs 137 (325)
T PRK00035 99 MRYGEPSIEDAVEQLKADGVDRIVVLPLYPQYSYSTTAS 137 (325)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf 546899778999999857985599997751141767759
No 284
>KOG3670 consensus
Probab=33.27 E-value=27 Score=16.41 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCCCC----HHHHHHHHHHHHHCC-CEEEE
Q ss_conf 878632889999999999998889367633025633455445-42157653----799999999973014-47986
Q gi|255764463|r 59 MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG-SHIIDPDN----LINEGICAIKKNIPN-IGIIT 128 (337)
Q Consensus 59 MPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G-seA~n~dg----lv~rAIr~IK~~fpd-l~vi~ 128 (337)
||++-|-=++.+-+..+-.++.-=+-|-||-+..+-.-+.++ ++...+.. -+-+|++.|++..|. ++++.
T Consensus 162 lp~QAr~Lv~rik~~~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~nvPR~iV~lv 237 (397)
T KOG3670 162 LPDQARDLVSRIKKDKEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRDNVPRTIVSLV 237 (397)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 6799999999997633755446537999996364244324698788870567888999999999864970179983
No 285
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=33.27 E-value=40 Score=15.31 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999999962897352466767799999999987788577300336664354301016753102446777744
Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKT 231 (337)
Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~s 231 (337)
--|-+.+++++-..+..|.|+|-=- +...+-+-+.+-..+.-. -+|++-+-.-.|.++-
T Consensus 179 GLsp~~~a~v~ye~~~GGvDfIKDD----------------E~l~~~pf~p~eeRv~~v-----~eai~ra~~eTGe~k~ 237 (477)
T CHL00040 179 GLSAKNYGRAVYECLRGGLDFTKDD----------------ENVNSQPFMRWRDRFLFC-----AEAIYKAQAETGEIKG 237 (477)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECC----------------CCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCEEE
T ss_conf 9997999999999970487452076----------------556798888789999999-----9999999997698018
Q ss_pred CCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 31572114--7889888876640898799553114589999999---624998999934618999999998889788999
Q gi|255764463|r 232 YYLDPANV--QEAIREASIDIQESADMLLVKPGLPYLDVCFRIK---EKFGLPTFAYQVSGEYAMIKAASLQGWINKNDA 306 (337)
Q Consensus 232 YQmd~~n~--~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k---~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~ 306 (337)
|-+|..+. +|-++-++.-.+.|+.++||---..=...++.++ +...+|+.+ |=.|- +++--.-..| ++.. +
T Consensus 238 y~~NiTa~~~eeM~~RAe~a~e~G~~~vMvd~~t~G~~Al~~La~~~Rd~~l~iH~-HRAgh-ga~~R~p~hG-Is~r-V 313 (477)
T CHL00040 238 HYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHI-HRAMH-AVIDRQKNHG-IHFR-V 313 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCCH-HHCCCCCCCC-CCHH-H
T ss_conf 99961479899999999999970996799985200057899999976543955884-03520-2215787666-2199-9
Q ss_pred HHHHHHHHHHHCCCEEEEC
Q ss_conf 9999999977269999820
Q gi|255764463|r 307 MMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 307 ~~E~l~~~kRAGAd~IitY 325 (337)
+ ..-.+=||+|.|.+-
T Consensus 314 l---aKl~RLaG~DhiH~G 329 (477)
T CHL00040 314 L---AKALRMSGGDHIHAG 329 (477)
T ss_pred H---HHHHHHCCCCEEECC
T ss_conf 9---999987288810116
No 286
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.97 E-value=40 Score=15.28 Aligned_cols=217 Identities=15% Similarity=0.170 Sum_probs=111.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 86328899999999999988893676330256334554454215765379---999999997301447986133271001
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI---NEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv---~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
|..+||++..++ .+.++|-.+|=|+...|.. +.++ +- .+.|+.+.+.. +|-| +|++|.|.
T Consensus 9 ~~~~~ple~a~~---~aa~lGydgVEi~~~~ph~---------~~~~-~~~~~~~~ik~l~~~~-gl~v---~~~~p~~~ 71 (276)
T PRK09856 9 GHQRLPIEHAFR---DASELGYDGIEIWGGRPHA---------FAPD-LKAGGIKQIKALAQTY-QMPI---IGYTPETN 71 (276)
T ss_pred CCCCCCHHHHHH---HHHHHCCCEEEECCCCCCC---------CCCC-CCHHHHHHHHHHHHHC-CCEE---EEECCCCC
T ss_conf 888999999999---9998499989973787654---------6765-4655799999999980-9868---99553213
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC---CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHC
Q ss_conf 143100136544628999999999999996289735-246---6767799999999987788577300336664354301
Q gi|255764463|r 138 HGHDGILCDGEIVNDETIELISHAAVIQADAGADII-APS---EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYG 213 (337)
Q Consensus 138 hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDiv-APS---dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYg 213 (337)
-.+=.+...+...-..+++.+.+.--.-++=||+.| -.| .-..+.=.+-+. ++.+
T Consensus 72 ~~~~~l~~~d~~~R~~~i~~~k~~id~A~~Lga~~v~v~~~~~~~~~~~~~~w~~------------------~~e~--- 130 (276)
T PRK09856 72 GYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGR------------------LAEN--- 130 (276)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH------------------HHHH---
T ss_conf 7765336798789899999999999999984998499936877788897999999------------------9999---
Q ss_pred CHHHHHHCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC------CHHHHHHHHHHHHHCCCCEE
Q ss_conf 01675310244677------7744315721147889888876640898799553------11458999999962499899
Q gi|255764463|r 214 PYRDAISTRDLLKG------DKKTYYLDPANVQEAIREASIDIQESADMLLVKP------GLPYLDVCFRIKEKFGLPTF 281 (337)
Q Consensus 214 PFRdA~~S~p~~~g------dr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKP------a~~yLDii~~~k~~~~~P~~ 281 (337)
||+.+.-+... | .-..|+.+.-|..+-+.+....+....--+|+-- +.+..|.++.+++. +.
T Consensus 131 -l~~l~~~A~~~-Gv~l~lE~l~~~e~~li~~~~~~~~~~~~v~~~~~~~~lD~~h~~~~~~~~~~~~~~~g~~----l~ 204 (276)
T PRK09856 131 -LSELCEYAENI-GMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDK----LR 204 (276)
T ss_pred -HHHHHHHHHHC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCHHHHHHHHCCC----EE
T ss_conf -99999999973-9989995176111420068999999998579986489985413755389999999985887----46
Q ss_pred EEECCHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 9934618--9999999988897889999999999977269999820
Q gi|255764463|r 282 AYQVSGE--YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 282 aYqVSGE--Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
-.|+..- -.--+..--.|-+|.+ |.+..+++.|=+.-+|.
T Consensus 205 HvHi~D~~g~~d~hl~pG~G~~d~~----~il~~L~~~gY~G~vsv 246 (276)
T PRK09856 205 HLHIVDSDGASDTHYIPGEGKMPLR----ELMRDIIDRGYEGYCTV 246 (276)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCHH----HHHHHHHHCCCCCEEEE
T ss_conf 9987679998667737999877889----99999998599815999
No 287
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.88 E-value=40 Score=15.27 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=72.1
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1166675898811048887863288999---9999999998889367633025633455445421576537999999999
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDV---AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK 118 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~---L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK 118 (337)
.|++|-= .-=+|-|.||-++ +.+.++.+.++|+..| .||...++. .+=..+.+.+-
T Consensus 52 iPV~vMI--------RPR~GdF~Ys~~E~~~M~~dI~~~~~~Ga~Gv-V~G~L~~dg------------~iD~~~~~~Li 110 (248)
T PRK11572 52 IPVHPII--------RPRGGDFCYSDGEFAAMLEDIRTVRELGFPGL-VTGVLDVDG------------HVDMPRMEKIM 110 (248)
T ss_pred CCEEEEE--------EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEEECCCC------------CCCHHHHHHHH
T ss_conf 9738999--------42699886798999999999999998699967-996688999------------84999999999
Q ss_pred HHHCCCEE----EECCCCCHHH------CCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCHH
Q ss_conf 73014479----8613327100------114310013654----46289999999999999962897-352466767799
Q gi|255764463|r 119 KNIPNIGI----ITDVALDPFT------IHGHDGILCDGE----IVNDETIELISHAAVIQADAGAD-IIAPSEMMDGRV 183 (337)
Q Consensus 119 ~~fpdl~v----i~DVcLc~YT------~hGHcGi~~~g~----IdND~Tl~~L~k~Al~~A~AGaD-ivAPSdMMDGrV 183 (337)
+..+.+-+ .-|+|-+|+. +.|-+-|+.-|. ++.-++|..|.++ ++-. |.+=+.-- .
T Consensus 111 ~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~~~~A~~G~~~L~~L~~~------a~~~iIm~GgGV~---~ 181 (248)
T PRK11572 111 AAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILTSGQQSDAEQGLSLIMELIAQ------GDAPIIMAGAGVR---A 181 (248)
T ss_pred HHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH------CCCCEEEECCCCC---H
T ss_conf 974898079862022149999999999975999898899978777889999999984------4996898789989---9
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999987788577
Q gi|255764463|r 184 QEIRKKLDSHGHINV 198 (337)
Q Consensus 184 ~aIR~~Ld~~g~~~~ 198 (337)
..+.+-++ .|+..+
T Consensus 182 ~Ni~~~~~-tG~~ei 195 (248)
T PRK11572 182 ENLQKFLD-AGVREV 195 (248)
T ss_pred HHHHHHHH-CCCCEE
T ss_conf 99999997-597789
No 288
>PRK09989 hypothetical protein; Provisional
Probab=32.84 E-value=40 Score=15.27 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=9.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q ss_conf 999999999888936763
Q gi|255764463|r 70 AVEKIKQVADLGIPAIAI 87 (337)
Q Consensus 70 L~~eie~~~~lGI~av~L 87 (337)
+++.++.+.+.|-.+|=+
T Consensus 17 ~~dR~~aAa~aGF~aVE~ 34 (258)
T PRK09989 17 FIERFAAARKAGFDAVEF 34 (258)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 999999999809999997
No 289
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=32.47 E-value=41 Score=15.23 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1166675898811048887863288999---9999999998889367633025633455445421576537999999999
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDV---AVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIK 118 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~---L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK 118 (337)
.|++|.=.. =+|-|-||-++ +.+.++.+.++|+..| .||...++.. .| ..+++.+.
T Consensus 51 ipv~vMIRP--------R~G~F~Ys~~E~~~M~~dI~~~~~~G~~Gv-V~G~L~~d~~-------iD-----~~~~~~li 109 (202)
T pfam03932 51 IPVYVMIRP--------RGGDFVYSDHELKAMLEDILKAVELGAPGV-VLGALTADGE-------ID-----TKRMEKLI 109 (202)
T ss_pred CCEEEEEEC--------CCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEEECCCCC-------CC-----HHHHHHHH
T ss_conf 974999842--------799886498999999999999998698978-9988889998-------29-----99999999
Q ss_pred HHHCCCEEEE----CCCCCHHH------CCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 7301447986----13327100------114310013654----462899999999999999628973524667677999
Q gi|255764463|r 119 KNIPNIGIIT----DVALDPFT------IHGHDGILCDGE----IVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ 184 (337)
Q Consensus 119 ~~fpdl~vi~----DVcLc~YT------~hGHcGi~~~g~----IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~ 184 (337)
+..+.+-+.- |.|-+++. ..|-+.|+.-|. .++-+++..|.++ |...-.|++-+.--..-+
T Consensus 110 ~~a~~l~~TFHRAfD~~~d~~~al~~L~~lG~~rILTSGg~~~a~~g~~~L~~l~~~----a~~~i~Im~GgGI~~~N~- 184 (202)
T pfam03932 110 EAAGGLGVTFHRAFDMCPDPEEALEQLIELGCERVLTSGGPLSALEGLEKLASLVAQ----AGGRISIMAGAGVNAENI- 184 (202)
T ss_pred HHHCCCCEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCHHHH-
T ss_conf 974688559862043059999999999975998787579978766749999999996----599849995799899999-
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999987788
Q gi|255764463|r 185 EIRKKLDSHGH 195 (337)
Q Consensus 185 aIR~~Ld~~g~ 195 (337)
.+-++..|+
T Consensus 185 --~~l~~~~g~ 193 (202)
T pfam03932 185 --AELRQLTGV 193 (202)
T ss_pred --HHHHHHHCC
T ss_conf --999997199
No 290
>PRK07124 consensus
Probab=32.39 E-value=6.1 Score=20.80 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCHHHCCCCEEEEC----C--CCCEEEC---CCCC-CCCCCCHHH-------HHHHHHHHHHCCCCEEE
Q ss_conf 8899986347788877331166675----8--9881104---8887-863288999-------99999999988893676
Q gi|255764463|r 24 NWIREMVREHRLSVSDLILPIFLTS----G--EKTVESI---NSMP-DVMRMSIDV-------AVEKIKQVADLGIPAIA 86 (337)
Q Consensus 24 ~~iR~Lv~Et~Ls~~dLI~PiFV~e----g--~~~k~~I---~SMP-Gv~R~Sid~-------L~~eie~~~~lGI~av~ 86 (337)
..++.++..+.|.+++ |-=+++-. | .|.-..+ .+|| ++--++++. .+...-..+..|---+.
T Consensus 32 ~ai~~al~~~~i~~~~-Id~vi~G~v~~~g~g~n~ar~~al~aGlp~~iP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvv 110 (402)
T PRK07124 32 VAIKGALEQAKVSPEA-IDEVIVGNVVSAGQGMGPGRQAAIFAGIPEEVPAYSLNMVCGSGMKTVMDAVSHIKAGDAEVV 110 (402)
T ss_pred HHHHHHHHHCCCCHHH-CCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9999999983989899-998999934755556679999999769998885699725778999999999999867997678
Q ss_pred EEECCCC
Q ss_conf 3302563
Q gi|255764463|r 87 IFPNIPM 93 (337)
Q Consensus 87 LFp~I~~ 93 (337)
|=+++++
T Consensus 111 lagGvEs 117 (402)
T PRK07124 111 VAAGVEV 117 (402)
T ss_pred EECCEEC
T ss_conf 9655101
No 291
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=32.02 E-value=42 Score=15.18 Aligned_cols=221 Identities=20% Similarity=0.225 Sum_probs=97.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCEEEECCCCCHHHC
Q ss_conf 86328899999999999988893676330256334554454215765---379999999997301447986133271001
Q gi|255764463|r 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD---NLINEGICAIKKNIPNIGIITDVALDPFTI 137 (337)
Q Consensus 61 Gv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d---glv~rAIr~IK~~fpdl~vi~DVcLc~YT~ 137 (337)
|-...+.+.+++.+++.++-|-.-+=+= + ++ +.-|+.-.+++ .-+-..|+.|++. +++.| ++|.|..
T Consensus 17 gg~~~~~~~a~~~a~~~i~~GAdiIDIG-~--eS--TrPg~~~i~~~eE~~Rl~pvl~~i~~~-~~v~i----SIDT~~~ 86 (258)
T cd00423 17 GGKFLSLDKALEHARRMVEEGADIIDIG-G--ES--TRPGAEPVSVEEELERVIPVLRALAGE-PDVPI----SVDTFNA 86 (258)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEC-C--CC--CCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEE----EEECCCH
T ss_conf 8767899999999999998799999979-8--77--899997477788888850056887427-99609----9979888
Q ss_pred CCCCCCCCCC-CCCHHHHHHHH-HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCH
Q ss_conf 1431001365-44628999999-999999996289735246676779999999998778857730033666435430101
Q gi|255764463|r 138 HGHDGILCDG-EIVNDETIELI-SHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPY 215 (337)
Q Consensus 138 hGHcGi~~~g-~IdND~Tl~~L-~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPF 215 (337)
.=----+..| .|.||-|--.. .++.-..|+.+|-+|.-- |.|
T Consensus 87 ~Va~~al~~G~~iINDVsg~~~d~~m~~~va~~~~~~ilmH--~~~---------------------------------- 130 (258)
T cd00423 87 EVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMH--MDG---------------------------------- 130 (258)
T ss_pred HHHHHHHHCCCCEEECCHHHHCCHHHHHHHHHCCCCEEEEE--CCC----------------------------------
T ss_conf 99999998599868240031065579999997499889830--578----------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHCCC--CEEEECCCHH-------HHHHHHHHHHH---CCCCEEE
Q ss_conf 675310244677774431572114788988-887664089--8799553114-------58999999962---4998999
Q gi|255764463|r 216 RDAISTRDLLKGDKKTYYLDPANVQEAIRE-ASIDIQESA--DMLLVKPGLP-------YLDVCFRIKEK---FGLPTFA 282 (337)
Q Consensus 216 RdA~~S~p~~~gdr~sYQmd~~n~~eA~~e-~~~D~~EGA--D~lMVKPa~~-------yLDii~~~k~~---~~~P~~a 282 (337)
.|....+...|.=.+.....-+.+ ...=.+.|- +=+++-||+- .+.+++.+..- ...|+.+
T Consensus 131 ------~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~IiiDPGiGFgK~~~~n~~ll~~l~~~~~~~g~Pilv 204 (258)
T cd00423 131 ------TPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFGKTEEHNLELLRRLDAFRELPGLPLLL 204 (258)
T ss_pred ------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf ------86556668986648999999999999999986999300887477677888788999999799997215994698
Q ss_pred EECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf 93461899999999888978899999999999772699998201899999985
Q gi|255764463|r 283 YQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILT 335 (337)
Q Consensus 283 YqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L~ 335 (337)
= +|- =++|......+--+...+-+-....---.||+++-+--.++..+-++
T Consensus 205 G-~SR-Ksfi~~~~~~~~~~Rl~~t~a~~~~a~~~Ga~ilRvHdV~e~~~ai~ 255 (258)
T cd00423 205 G-VSR-KSFLGDLLSVGPKDRLAGTAAFLAAAILNGADIVRVHDVKELRDAIK 255 (258)
T ss_pred E-ECH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 6-029-89998754998687409899999999987999999589899999998
No 292
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=32.00 E-value=2.4 Score=23.55 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=27.6
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHH
Q ss_conf 999962897352466767799999999987788--57730033666435
Q gi|255764463|r 163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNS 209 (337)
Q Consensus 163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS 209 (337)
+.++.+|+| |..|--|-+.||++.|+.+|. .|+-+.----=||+
T Consensus 276 ~~~~~~g~d---P~~m~~~p~~A~~k~L~~agl~~~Did~~EinEAFA~ 321 (392)
T PRK06633 276 VSYASAGVD---PSIMGTAPVPASQKALSKAGWSVNDLEVIEVNEAFAA 321 (392)
T ss_pred EEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEEHHHHH
T ss_conf 988998758---5763535199999999984998310867886036688
No 293
>pfam09505 Dimeth_Pyl Dimethylamine methyltransferase (Dimeth_PyL). This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=31.69 E-value=13 Score=18.55 Aligned_cols=138 Identities=21% Similarity=0.275 Sum_probs=58.6
Q ss_pred HHHHCCCCCHHHCCCCEEEECCCCCEE------ECCCCCC--CCCCCHHHHHHHHHHHHHCCCCE-----EEEEECCCCC
Q ss_conf 986347788877331166675898811------0488878--63288999999999999888936-----7633025633
Q gi|255764463|r 28 EMVREHRLSVSDLILPIFLTSGEKTVE------SINSMPD--VMRMSIDVAVEKIKQVADLGIPA-----IAIFPNIPMD 94 (337)
Q Consensus 28 ~Lv~Et~Ls~~dLI~PiFV~eg~~~k~------~I~SMPG--v~R~Sid~L~~eie~~~~lGI~a-----v~LFp~I~~~ 94 (337)
+-++--.+...+.|.|+|--.-.|--- |.+ -|| ..-|-+|+.-+-.|++.+.=-+- --||..-.+-
T Consensus 129 necqamevcqqnmiiplfygampnmglyytpdgpfe-npgdlmkafkideawesmehaadhltrdtvwvmqklfasgadg 207 (466)
T pfam09505 129 NECQAMEVCQQNMIIPLFYGAMPNMGLYYTPDGPFE-NPGDLMKAFKIDEAWESMEHAADHLTRDTVWVMQKLFASGADG 207 (466)
T ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 356799998746563300036788732358998878-8688887630138888788777553267999999987626876
Q ss_pred CCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC-CCCCCHHHHHHHH--HHHHHHHHHC
Q ss_conf 45544542157653---7999999999730144798613327100114310013-6544628999999--9999999962
Q gi|255764463|r 95 LRNNTGSHIIDPDN---LINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC-DGEIVNDETIELI--SHAAVIQADA 168 (337)
Q Consensus 95 ~Kd~~GseA~n~dg---lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~-~g~IdND~Tl~~L--~k~Al~~A~A 168 (337)
-+..-+ |-.-|| =...|+.+++++||++.|-. -+..----|--|-+. || .|+.-| -+||-..|+|
T Consensus 208 -vnfdtt-aaagdgdmygtlhavealrkefpemyiev--gmagemvlgmhgnlqydg-----vtlaglwphqqaplvaka 278 (466)
T pfam09505 208 -VNFDTT-AAAGDGDMYGTLHAVEALRKEFPEMYIEV--GMAGEMVLGMHGNLQYDG-----VTLAGLWPHQQAPLVAKA 278 (466)
T ss_pred -CCCCCC-CCCCCCCCHHHHHHHHHHHHHCHHHEEEE--CCCCCEEEECCCCCCCCC-----EEEECCCCCCCCCHHHHC
T ss_conf -564352-23578641135799999986560451540--202000110146400066-----677235744447366643
Q ss_pred CCCEEEC
Q ss_conf 8973524
Q gi|255764463|r 169 GADIIAP 175 (337)
Q Consensus 169 GaDivAP 175 (337)
||.+..|
T Consensus 279 ganvfgp 285 (466)
T pfam09505 279 GANVFGP 285 (466)
T ss_pred CCCCCCC
T ss_conf 6652055
No 294
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain; InterPro: IPR013350 Proteins in this entry represent a small clade of ribonucleoside-diphosphate reductase alpha chains which are sufficiently divergent from the usual Class I ribonucleotide reductase (RNR) alpha chains (NrdE or NrdA, IPR013346 from INTERPRO) to form a distinct group. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain..
Probab=31.50 E-value=31 Score=16.08 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=48.7
Q ss_pred ECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 0336664354301016753102446777744315721147889888876640898799553114589999999
Q gi|255764463|r 201 MPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIK 273 (337)
Q Consensus 201 msYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k 273 (337)
||-..||.++-|-||-=+-.-+-.+ =||.||+.=...++++||+....+ +-+. |=-=+--|+|.+.+=+
T Consensus 1 ~s~~~r~~~S~~e~~~w~n~~~r~~--~rrgYll~G~~v~~rvr~iA~~~e-~l~~-~~gf~~rf~ey~arG~ 69 (560)
T TIGR02510 1 MSAERRYLQSTGEIFEWLNTQGRSY--LRRGYLLKGETVEDRVREIASTAE-KLDK-VEGFEERFFEYLARGK 69 (560)
T ss_pred CCCCCHHHHHCCCCHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHHHH-HHCC-CCCHHHHHHHHHHHHH
T ss_conf 9753000101035603443677888--651645789776678999999998-5114-7404678899998404
No 295
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family; InterPro: IPR006360 This entry represents a methyltransferase domain found in proteins which are involved in C1 metabolism in methanogenic archaea and methylotrophic bacteria. It is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (4.1.1.37 from EC). In methanogens, this domain is found in single-domain proteins catalysing the transfer of the methyl group of methylcobalamin to coenzymeM . In Methanosarcina barkeri these proteins have been shown to be involved in methanogenesis from C1 compounds such as methylamine and dimethylsulphide , CH3-cob(III)alamin + coenzymeM --> cob(I)alamin + CH3-coenzymeM In methylotrophic bacteria, this domain is found at the N-terminus of the bifunctional corrinoid-binding CmuA protein, which is involved in chloromethane utilisation. The pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , . CH3Cl + cob(I)alamin ---> CH3-cob(III)alamin + Cl- ; GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=31.46 E-value=42 Score=15.12 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHCC-CEEEECCCCCHHHCCCCC-CC---CC---CC-C---CCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 3799999999973014-479861332710011431-00---13---65-4---462899999999999999628973524
Q gi|255764463|r 108 NLINEGICAIKKNIPN-IGIITDVALDPFTIHGHD-GI---LC---DG-E---IVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 108 glv~rAIr~IK~~fpd-l~vi~DVcLc~YT~hGHc-Gi---~~---~g-~---IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
-+|-+|||.+++++.+ +-||+ +=--|+|-=+|- |. +. ++ + =.-|...+.-...|-..-++|||+++|
T Consensus 126 ~~vL~a~~~l~~r~~~~~p~i~-~~~gP~t~A~~~~~~~~f~~~~~~~~d~~~~~~e~a~d~~~aya~~m~e~Gadv~~i 204 (350)
T TIGR01463 126 PVVLEAIKILRERYGDELPIIG-SMEGPFTLAQDLIGVEEFLKWISTDPDLAKAVLELALDFVIAYAKAMVEAGADVIAI 204 (350)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 6678999999996388604168-886646677664045888630368645799999998899999999888725204311
Q ss_pred ------CCCCCCH
Q ss_conf ------6676779
Q gi|255764463|r 176 ------SEMMDGR 182 (337)
Q Consensus 176 ------SdMMDGr 182 (337)
+|.|-|-
T Consensus 205 ~DP~aS~dL~~pe 217 (350)
T TIGR01463 205 ADPVASSDLISPE 217 (350)
T ss_pred CCCCCCCCCCCCH
T ss_conf 5766670005714
No 296
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=31.44 E-value=23 Score=16.91 Aligned_cols=194 Identities=20% Similarity=0.262 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHCCCC----EEEEEECCCCCCCCCCCCCCCCCCCHHH-HHHH-HHHHH--------------------
Q ss_conf 99999999999988893----6763302563345544542157653799-9999-99973--------------------
Q gi|255764463|r 67 IDVAVEKIKQVADLGIP----AIAIFPNIPMDLRNNTGSHIIDPDNLIN-EGIC-AIKKN-------------------- 120 (337)
Q Consensus 67 id~L~~eie~~~~lGI~----av~LFp~I~~~~Kd~~GseA~n~dglv~-rAIr-~IK~~-------------------- 120 (337)
++.-++.+|++.+--=+ -.-|| .+++ . ..|..-|-|+|-+. +.+. -+++.
T Consensus 226 L~~~l~~~eEakkRDHRklGkel~LF-~f~~-~--~pGl~~w~P~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw 301 (639)
T PRK00413 226 LDAYLHRLEEAEKRDHRKLGKELDLF-SFQE-E--GPGLPFWHPKGWIIRNELEDYMRRRHLKAGYQEVNTPHILDRSLW 301 (639)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHCCCE-EECC-C--CCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
T ss_conf 99999999998852888887743515-7036-6--887646637689999999999999999869859836413468899
Q ss_pred --------HC-CCEEE-----ECCCCCHHHCCCCCCCCCCCC--------------------------------------
Q ss_conf --------01-44798-----613327100114310013654--------------------------------------
Q gi|255764463|r 121 --------IP-NIGII-----TDVALDPFTIHGHDGILCDGE-------------------------------------- 148 (337)
Q Consensus 121 --------fp-dl~vi-----~DVcLc~YT~hGHcGi~~~g~-------------------------------------- 148 (337)
|. +|... -+-+|=|.+.-|||-|+..+.
T Consensus 302 ~~SGHw~~Y~e~Mf~~~~~~~~~~~lKPMNCP~H~~if~~~~~SYRdLPlR~aEfg~~~R~E~SG~L~GL~RvR~FtqdD 381 (639)
T PRK00413 302 ETSGHWDHYRENMFPTMSDDGEDYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGTVHRYEKSGALHGLMRVRGFTQDD 381 (639)
T ss_pred HHCCCHHHHCCCCCCCEECCCCEEEECCCCCCCHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf 65474223225422324015210320466870033564435535554755666411320567787445642330000158
Q ss_pred --C------CHHHHHHHHHHHHHHHHHCCCC--EEECCC----------CCCCHHHHHHHHHHHCCCCCCCEECHHHHHH
Q ss_conf --4------6289999999999999962897--352466----------7677999999999877885773003366643
Q gi|255764463|r 149 --I------VNDETIELISHAAVIQADAGAD--IIAPSE----------MMDGRVQEIRKKLDSHGHINVGIMPYVAKFN 208 (337)
Q Consensus 149 --I------dND~Tl~~L~k~Al~~A~AGaD--ivAPSd----------MMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfa 208 (337)
| ..++-...|.-+--.|..=|-. -+--|- |-|---.++|++|++.|..-.. ..=-
T Consensus 382 aHIFc~~dQi~~Ei~~~l~~~~~vy~~fGf~~~~~~lStrpek~~g~~e~W~~Ae~~L~~al~~~g~~y~~-----~~Ge 456 (639)
T PRK00413 382 AHIFCTPEQIKDELLSVLDLILSVYKDFGLTDYYLELSTRPEKRVGSDELWEKATEALREALEESGLEYVE-----NPGE 456 (639)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-----CCCC
T ss_conf 41324789999999999999999999749980389996475113588899999999999999974998087-----8886
Q ss_pred HHHHCC-----HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CC--CEEEECCCH--HHHHHHHHHHHHC
Q ss_conf 543010-----16753102446777744315721147889888876640-89--879955311--4589999999624
Q gi|255764463|r 209 SSFYGP-----YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SA--DMLLVKPGL--PYLDVCFRIKEKF 276 (337)
Q Consensus 209 S~fYgP-----FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GA--D~lMVKPa~--~yLDii~~~k~~~ 276 (337)
.+|||| ++||.|-.=+ -.|-|+|+... | |=-...++| |. --+|+--|. .+=-.|.-+-+++
T Consensus 457 gAFYGPKID~~~~DalgR~wq----~~TiQlDf~lP-e--rF~l~Y~~~dg~~~~PVmIHRAi~GS~ERfiaiLiEh~ 527 (639)
T PRK00413 457 GAFYGPKIDVQLKDAIGRTWQ----CGTIQLDFNLP-E--RFDLEYIAADGEKHRPVMIHRAIFGSIERFIGILIEHY 527 (639)
T ss_pred CCEECCEEEEEEECCCCCEEE----CCHHHHHHCCH-H--HCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 111101667785144687132----00233222245-4--24888998889816308999525565899999999980
No 297
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=31.29 E-value=43 Score=15.10 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=119.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 88786328899999999999988893676330--2563345544542157653799999999973014479861332710
Q gi|255764463|r 58 SMPDVMRMSIDVAVEKIKQVADLGIPAIAIFP--NIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPF 135 (337)
Q Consensus 58 SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp--~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~Y 135 (337)
+-++--.-+++.+++.++.+-++|-.++-+-= ...++.-+. ...+++ ++ .+-.+-.....|-+-|=|..=||
T Consensus 15 ~~~~~~~~~~~~~~~~a~~AE~lGfds~w~~Dh~~~~~~~~~~--~~~~dp--~~--~LaalAa~T~ri~lgt~v~~lp~ 88 (298)
T TIGR03571 15 NYQGRPVPDMERQVELAQRAEALGFAALWLRDVPLYDPDFGDA--GQVFDP--FV--YLGYLAAVTSRIALGTAAIVLPL 88 (298)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CCCCCH--HH--HHHHHHHHCCEEEEEEEEECCCC
T ss_conf 7899965699999999999998599988762546545787886--665289--99--99999985796688853424254
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHH
Q ss_conf 0114310013654462899999999-----------99999962897352466767799999999987788577300336
Q gi|255764463|r 136 TIHGHDGILCDGEIVNDETIELISH-----------AAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYV 204 (337)
Q Consensus 136 T~hGHcGi~~~g~IdND~Tl~~L~k-----------~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYs 204 (337)
- |=.++.+.- +||+.|+. ...-+...|.+.=-.-.++|-.+..+|+.+..+.. +|
T Consensus 89 r---~P~~lAk~~----atLD~lS~GRl~lGvG~G~~~~E~~a~G~~~~~r~~r~~E~l~il~~lw~~~~~------~~- 154 (298)
T TIGR03571 89 R---HPLHVAKAA----ASLDQLSGGRFLLGVASGDRPSEYPAFGVDFESRGERFREAIDVLRAALREPFP------SI- 154 (298)
T ss_pred C---CHHHHHHHH----HHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC------CC-
T ss_conf 4---899999999----989976299579998334877778773998015999999999999999659997------75-
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCC--CC---CCHHHHHHHHHHHHHHCCCCEEEECCCH-----HHHHHHHHHHH
Q ss_conf 66435430101675310244677774431--57---2114788988887664089879955311-----45899999996
Q gi|255764463|r 205 AKFNSSFYGPYRDAISTRDLLKGDKKTYY--LD---PANVQEAIREASIDIQESADMLLVKPGL-----PYLDVCFRIKE 274 (337)
Q Consensus 205 aKfaS~fYgPFRdA~~S~p~~~gdr~sYQ--md---~~n~~eA~~e~~~D~~EGAD~lMVKPa~-----~yLDii~~~k~ 274 (337)
...||. |+..+...|+- +| .+ -.++..+++-+ .+-+|-.|.-|.. ..+|.+++..+
T Consensus 155 ---~G~~~~-~~~~~~~~P~P------~q~~~Pi~~gg~~~~~~~~a----Ar~gdgw~~~~~~~e~~~~~i~~~r~~~~ 220 (298)
T TIGR03571 155 ---RSSLGE-LDGGLDLLPKP------TSGRIPLLATGSAQQSLEWI----ARNMDGWMTYPRPPETQRARIDEWREAVA 220 (298)
T ss_pred ---CCCCCC-CCCCCCCCCCC------CCCCCCEEEECCCHHHHHHH----HHHCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf ---797655-58866668999------89995969746977899999----99788831269999999999999999877
Q ss_pred HC-CCCEEEEECCHHHHH----HHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 24-998999934618999----99999888978899999999999772699998201
Q gi|255764463|r 275 KF-GLPTFAYQVSGEYAM----IKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 275 ~~-~~P~~aYqVSGEYam----i~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~ 326 (337)
.. ..|.. +.+.-++.- .......|+---.+.+.|.|..+.-+|+|-++-.+
T Consensus 221 ~~g~~p~~-~~~~~~l~~d~~~~~~~~~~g~~~g~~~iie~l~~y~eaGv~~vil~~ 276 (298)
T TIGR03571 221 SGGFKPFG-QSMHLDLSEDPDEPPTPIRLGYRTGRNALIELLDALREAGVNHVALNL 276 (298)
T ss_pred HCCCCCCC-EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 42799641-057998735876544221254204899999999999976997899737
No 298
>KOG4076 consensus
Probab=31.28 E-value=21 Score=17.24 Aligned_cols=39 Identities=31% Similarity=0.180 Sum_probs=26.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf 799553114589999999624998999934618999999998889
Q gi|255764463|r 256 MLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW 300 (337)
Q Consensus 256 ~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~ 300 (337)
+.+-.|+. -|.++.-.+.-. -|-.||.|+|-|+-..++-
T Consensus 41 ~~GklP~~--sd~l~krlQkgr----KyFDSGDYam~KAk~~~~~ 79 (121)
T KOG4076 41 SYGKLPGG--SDFLRKRLQKGR----KYFDSGDYAMAKAKMKNKQ 79 (121)
T ss_pred HHCCCCCC--CHHHHHHHHHCC----CCCCCCHHHHHHHHCCCCC
T ss_conf 73778761--289999998404----1336410889886035666
No 299
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=30.98 E-value=34 Score=15.77 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=60.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCC--CEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 352466767799999999987788577--300336664354301016753102446777744315721147889888876
Q gi|255764463|r 172 IIAPSEMMDGRVQEIRKKLDSHGHINV--GIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASID 249 (337)
Q Consensus 172 ivAPSdMMDGrV~aIR~~Ld~~g~~~~--~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D 249 (337)
+|=|-.+-.|.++.|-+.+.++||.=+ ..+-.+..-++.||..+|+. .| | |+
T Consensus 6 iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~---~p-f------f~---------------- 59 (134)
T cd04412 6 IIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGV---VP-E------LP---------------- 59 (134)
T ss_pred EECCHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCC---CC-C------HH----------------
T ss_conf 9890355148899999999986999976141679999999999997065---43-1------77----------------
Q ss_pred HHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 6408987995531145899999996249989999346189999999988897889999
Q gi|255764463|r 250 IQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAM 307 (337)
Q Consensus 250 ~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~ 307 (337)
++ +.-.+.=|+.|..++||=|--+.-..-|--|...+-
T Consensus 60 -----------------~l---v~~mtsGPvval~L~g~naV~~~R~l~Gpt~p~~A~ 97 (134)
T cd04412 60 -----------------AM---VDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAK 97 (134)
T ss_pred -----------------HH---HHHHCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHH
T ss_conf -----------------89---999716987899860745999999985799857766
No 300
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=30.74 E-value=44 Score=15.04 Aligned_cols=19 Identities=53% Similarity=0.623 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCCEEE-CCCC
Q ss_conf 999999962897352-4667
Q gi|255764463|r 160 HAAVIQADAGADIIA-PSEM 178 (337)
Q Consensus 160 k~Al~~A~AGaDivA-PSdM 178 (337)
+.+-.+|..|||+|. ||..
T Consensus 148 e~~r~la~~Ga~ii~~ps~~ 167 (259)
T cd07577 148 EAARTLALKGADIIAHPANL 167 (259)
T ss_pred HHHHHHHHCCCCEEEEEECC
T ss_conf 99999998799899990046
No 301
>TIGR01595 cas_CT1132 CRISPR-associated protein, CT1132 family; InterPro: IPR006482 This protein is found in at least five species that contain CRISPR loci being found exclusively next to other cas proteins. Its function is unknown..
Probab=30.65 E-value=44 Score=15.03 Aligned_cols=170 Identities=20% Similarity=0.233 Sum_probs=110.1
Q ss_pred CCCEEEECCCC-----CHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHCCCCEEE----CCCCCCCHHHHHHHHHH
Q ss_conf 14479861332-----71001143100136544628999999999-9999962897352----46676779999999998
Q gi|255764463|r 122 PNIGIITDVAL-----DPFTIHGHDGILCDGEIVNDETIELISHA-AVIQADAGADIIA----PSEMMDGRVQEIRKKLD 191 (337)
Q Consensus 122 pdl~vi~DVcL-----c~YT~hGHcGi~~~g~IdND~Tl~~L~k~-Al~~A~AGaDivA----PSdMMDGrV~aIR~~Ld 191 (337)
...+++||||| +..-+-||.=++..++++||.--+....+ -|.-+++++-=+- |.=-.-|.|-.|+..+-
T Consensus 34 Tg~l~vsDV~lKR~vRd~lq~~G~~il~~~~~~~~~k~~s~~~~~~dl~~~~~~~K~~~krnkPGvaqGGevd~~~~~~~ 113 (310)
T TIGR01595 34 TGRLLVSDVRLKRKVRDYLQELGKEILVKTKERLEDKVRSLEKVLEDLVVKKAKVKDAEKRNKPGVAQGGEVDKIEEKAC 113 (310)
T ss_pred CCEEEEEEEEEEHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 57466877664023357788618724765067545226899987876400103477600136886456862124589875
Q ss_pred HCCCCCC----CEECHHHH--HHHHHHCCHHHHHHC--CCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 7788577----30033666--435430101675310--2446777744315721-1478898888766408987995531
Q gi|255764463|r 192 SHGHINV----GIMPYVAK--FNSSFYGPYRDAIST--RDLLKGDKKTYYLDPA-NVQEAIREASIDIQESADMLLVKPG 262 (337)
Q Consensus 192 ~~g~~~~----~ImsYsaK--faS~fYgPFRdA~~S--~p~~~gdr~sYQmd~~-n~~eA~~e~~~D~~EGAD~lMVKPa 262 (337)
.. |.|| .+|+++.| .++.-=||-.=.-+- .|. -=.+.|..-+ +..||=-+...|-
T Consensus 114 ~~-y~DvR~FGaV~~~~kkGam~~~v~GPvq~~~a~Sl~Pv---~~~~~qit~~~~~~eak~~~~~~~------------ 177 (310)
T TIGR01595 114 AK-YIDVRLFGAVITKSKKGAMEIDVRGPVQVSYAKSLEPV---VILELQITRAAAGEEAKAEKQRDQ------------ 177 (310)
T ss_pred HH-CCCEEEECCCCCCCCCCCEECCCCCCEEEEECCCCCCE---EEEEECCHHHHHHCCHHHHCCCCC------------
T ss_conf 20-34234302105766563121022266478744530512---203001113332001022046652------------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC--CHH-HHHHHHHHHHH
Q ss_conf 145899999996249989999346189999999988897--889-99999999997
Q gi|255764463|r 263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWI--NKN-DAMMESLLAFK 315 (337)
Q Consensus 263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~--d~~-~~~~E~l~~~k 315 (337)
+.+..++-+|=|.|..-|=|.-= +|.+.|+- .++ ..+.|.|+...
T Consensus 178 -------~t~~~k~~vpYa~y~~~G~~n~n-~A~~tG~~ts~eD~~~~~~aL~~~~ 225 (310)
T TIGR01595 178 -------RTMGEKYVVPYALYKLYGVINAN-LAKKTGFSTSEEDLEKFLEALLNGF 225 (310)
T ss_pred -------CCCCCCCCCCHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf -------10143553651665432455344-3531487645888999999999876
No 302
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=30.62 E-value=44 Score=15.03 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred EEEECCCCCEEECCCCCCCCC--------------CCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 666758988110488878632--------------889999999999998889367633
Q gi|255764463|r 44 IFLTSGEKTVESINSMPDVMR--------------MSIDVAVEKIKQVADLGIPAIAIF 88 (337)
Q Consensus 44 iFV~eg~~~k~~I~SMPGv~R--------------~Sid~L~~eie~~~~lGI~av~LF 88 (337)
+-++|..+=+-+|++.|..-. ||.+.+.+.++-+.+.||+-|-=|
T Consensus 37 ~HltDdqgwrle~~~~P~lt~~ga~~~~~~~~~g~YT~~d~~eiv~yA~~rgI~ViPEI 95 (329)
T cd06568 37 LHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 88862898703007877623356656668888870789999999999997599897623
No 303
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.60 E-value=29 Score=16.24 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=19.6
Q ss_pred HHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 999999628973524667677999
Q gi|255764463|r 161 AAVIQADAGADIIAPSEMMDGRVQ 184 (337)
Q Consensus 161 ~Al~~A~AGaDivAPSdMMDGrV~ 184 (337)
+.-+.-.||||++=--||.||++-
T Consensus 105 iva~al~aGa~vLySEDmQ~gl~i 128 (142)
T COG5573 105 IVATALNAGADVLYSEDMQDGLVI 128 (142)
T ss_pred HHHHHHHCCCCEEECHHCCCCEEE
T ss_conf 999999758766533002687543
No 304
>PRK07695 transcriptional regulator TenI; Provisional
Probab=30.50 E-value=44 Score=15.01 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=41.1
Q ss_pred HHHHHHCCCCEEEE--------CCCHH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 88766408987995--------53114--589999999624998999934618999999998889788999999999997
Q gi|255764463|r 246 ASIDIQESADMLLV--------KPGLP--YLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFK 315 (337)
Q Consensus 246 ~~~D~~EGAD~lMV--------KPa~~--yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~k 315 (337)
+.....+|||++-+ ||+.+ -++.++++...+.+|+.|- |-++.+. +....
T Consensus 108 ~~~a~~~gaDYi~~Gpif~T~tK~~~~~~G~~~l~~~~~~~~iPvvAI---------------GGI~~~n-----i~~v~ 167 (202)
T PRK07695 108 AIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSEIARALSIPVIAI---------------GGITPEN-----TRDVL 167 (202)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCCHHH-----HHHHH
T ss_conf 999977699969972541268888988789999999998679998998---------------6989999-----99999
Q ss_pred HHCCCEEE
Q ss_conf 72699998
Q gi|255764463|r 316 RAGCDGIF 323 (337)
Q Consensus 316 RAGAd~Ii 323 (337)
++||+.|-
T Consensus 168 ~~Ga~giA 175 (202)
T PRK07695 168 AAGVSGIA 175 (202)
T ss_pred HCCCCEEE
T ss_conf 82999999
No 305
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.43 E-value=44 Score=15.00 Aligned_cols=179 Identities=21% Similarity=0.236 Sum_probs=103.4
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCEEEE
Q ss_conf 104888786328899999999999988893--67633025633455445421576537999999---9997301447986
Q gi|255764463|r 54 ESINSMPDVMRMSIDVAVEKIKQVADLGIP--AIAIFPNIPMDLRNNTGSHIIDPDNLINEGIC---AIKKNIPNIGIIT 128 (337)
Q Consensus 54 ~~I~SMPGv~R~Sid~L~~eie~~~~lGI~--av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr---~IK~~fpdl~vi~ 128 (337)
.|..==||.=.+++-..+.++ +.++|+. .+.+.-+|--+-|-+.--..+.-+++.=||+- -||-.-||+.||+
T Consensus 13 ~~~~WCpGCG~~~Il~a~~~a--l~el~~~~~~~v~vSGIGCs~r~p~y~~~~~~h~lHGRalp~AtGiK~AnPdL~Viv 90 (286)
T PRK11866 13 RPPIWCPGCGNYGILEALRRA--LAELGIPPENVVVVSGIGCSSNLPEFLNTYGIHGIHGRLLPIATGVKWANPKLTVIA 90 (286)
T ss_pred CCCCCCCCCCCHHHHHHHHHH--HHHCCCCCCCEEEEECCCCCCCCCCCEECCCEEHHHCCCHHHHHHHHHHCCCCEEEE
T ss_conf 998668999718999999999--998599966389982777663050507526240221250688999987589977999
Q ss_pred CC---CC-----------------------------------CHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 13---32-----------------------------------7100114310013-654462899999999999999628
Q gi|255764463|r 129 DV---AL-----------------------------------DPFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAG 169 (337)
Q Consensus 129 DV---cL-----------------------------------c~YT~hGHcGi~~-~g~IdND~Tl~~L~k~Al~~A~AG 169 (337)
-. +. .|-|..|.-.-.. .|.++... ....+|+ | +|
T Consensus 91 ~~GDGD~~~IG~nh~ihA~rRN~dit~iv~nN~iYGlTgGQ~SpTTp~G~~T~ttP~G~~~~p~---np~~la~--a-~g 164 (286)
T PRK11866 91 YGGDGDGYGIGLQHLIHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPF---NPIALAL--A-AG 164 (286)
T ss_pred EECCCCHHCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHH--H-CC
T ss_conf 9268732042388999999848993799988743214789689899998857647999877897---9999999--8-79
Q ss_pred CCEEECC--CCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH-HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9735246--676779999999998778857730033666435-4301016753102446777744315721147889888
Q gi|255764463|r 170 ADIIAPS--EMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS-SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREA 246 (337)
Q Consensus 170 aDivAPS--dMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS-~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~ 246 (337)
|-.||-+ .-+.--...|++++...||.-+-|+|--.-|.- +-|.=||+-+-. + +... .||.|..+|+.-+
T Consensus 165 atfVAR~~~~~~~~l~~~ik~Ai~hkGfs~VeVlspCvTfNk~nt~~wy~~~~~~---l--~e~~--~dp~d~~~A~~~a 237 (286)
T PRK11866 165 ATFVARGFSGDVKHLKEIIKKAIKHKGFSFIDVLSPCVTFNKVNTYDWFRPRVYK---L--EETG--HDPTNFEQAYKKA 237 (286)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHCEEE---C--CCCC--CCHHHHHHHHHHH
T ss_conf 9889977047999999999999779996799997899826776512334435684---6--6579--8827799999998
Q ss_pred H
Q ss_conf 8
Q gi|255764463|r 247 S 247 (337)
Q Consensus 247 ~ 247 (337)
.
T Consensus 238 ~ 238 (286)
T PRK11866 238 L 238 (286)
T ss_pred H
T ss_conf 8
No 306
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=30.36 E-value=44 Score=15.00 Aligned_cols=59 Identities=27% Similarity=0.283 Sum_probs=41.7
Q ss_pred HHHHHHCCCCEEEEC--------CCH---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 887664089879955--------311---458999999962499899993461899999999888978899999999999
Q gi|255764463|r 246 ASIDIQESADMLLVK--------PGL---PYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 (337)
Q Consensus 246 ~~~D~~EGAD~lMVK--------Pa~---~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~ 314 (337)
+..-...|||++.+= |+. --++.++.+++.+++|+.|. |-++.+ .+..+
T Consensus 108 ~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~~~~~Pv~Ai---------------GGI~~~-----ni~~~ 167 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAI---------------GGITPE-----NAAEV 167 (196)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCCHH-----HHHHH
T ss_conf 9998870999388646557898888778778899999998679998998---------------589999-----99999
Q ss_pred HHHCCCEEEE
Q ss_conf 7726999982
Q gi|255764463|r 315 KRAGCDGIFT 324 (337)
Q Consensus 315 kRAGAd~Iit 324 (337)
.++||+.|--
T Consensus 168 ~~~G~~giAv 177 (196)
T cd00564 168 LAAGADGVAV 177 (196)
T ss_pred HHCCCCEEEE
T ss_conf 9809999997
No 307
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.29 E-value=44 Score=14.99 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301447986133271001143100
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGI 143 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi 143 (337)
+...+.+.+.++.+.+.|+..+.+.|.+-+.. +-+..+. .+.++..++.-..+ +.
T Consensus 16 ~iD~~~l~~~i~~l~~~Gv~gi~v~GstGE~~-----~Ls~eEr---~~vi~~~~~~~~~v--i~--------------- 70 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGP-----SLSFQEK---LELLKAYSDITDKV--IF--------------- 70 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH-----HCCHHHH---HHHHHHHHHHCCCE--EE---------------
T ss_conf 67999999999999977999999781312165-----5899999---99999999967981--89---------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE---CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf 1365446289999999999999962897352---4667677999999999877885773003366643543010167531
Q gi|255764463|r 144 LCDGEIVNDETIELISHAAVIQADAGADIIA---PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS 220 (337)
Q Consensus 144 ~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA---PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~ 220 (337)
.-|.+.-+++ .++|-...++|||.|. |.=. -+ ..+-.+..| |++.+.
T Consensus 71 -~vg~~~~~~a----i~la~~A~~~Gad~i~~~pP~y~-~~-------------~~~~~l~~y-----------f~~va~ 120 (279)
T cd00953 71 -QVGSLNLEES----IELARAAKSFGIYAIASLPPYYF-PG-------------IPEEWLIKY-----------FTDISS 120 (279)
T ss_pred -EECCCCHHHH----HHHHHHHHHCCCCEEEEECCCCC-CC-------------CCHHHHHHH-----------HHHHHH
T ss_conf -9777879999----99999999779998997688678-99-------------999999999-----------999985
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 0244677774431572114788988887664089-8799553114589999999624998999934618999
Q gi|255764463|r 221 TRDLLKGDKKTYYLDPANVQEAIREASIDIQESA-DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAM 291 (337)
Q Consensus 221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA-D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYam 291 (337)
+-|... |+.+.+...+--.+....+.+-. .++-||-+-..+.-+.++++.-. -+..+.-+.++.+
T Consensus 121 ~lPi~l-----Yn~P~~tg~~l~~~~~~~L~~~~~~v~giKds~~d~~~~~~~~~~~~-~~~v~~G~d~~~~ 186 (279)
T cd00953 121 PYPTFI-----YNYPKATGYDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKRLVP-DFKVYSGPDSLIF 186 (279)
T ss_pred HCCEEE-----EECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC-CCEEECCCHHHHH
T ss_conf 098769-----96775358888999999998179988999738769999999998489-9478569579999
No 308
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.28 E-value=44 Score=14.99 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH---HHHHHHHHHCCCCCCCEEC
Q ss_conf 89999999999999962897352466767799---9999999877885773003
Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPSEMMDGRV---QEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV---~aIR~~Ld~~g~~~~~Ims 202 (337)
+.|.+...+.|+ +-++|+|+-|.+|-+.. ....+.|.++|..+++|+-
T Consensus 36 ~~s~eeiv~~A~---~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~v 86 (122)
T cd02071 36 RQTPEEIVEAAI---QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVG 86 (122)
T ss_pred CCCHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 889999999999---739989999646554478999999999976999846999
No 309
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.23 E-value=44 Score=14.98 Aligned_cols=194 Identities=16% Similarity=0.182 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCC
Q ss_conf 89999999999998889367633025633455445421576537999999999730144798613327100114310013
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILC 145 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~ 145 (337)
+.+.+.+.++++.+.|..+|++.|.. +.++.+.++.. .+.++.+ -++|-. ..
T Consensus 17 ~~~di~~l~~~a~~~g~~avcv~p~~------------------v~~~~~~l~~~--~v~~vv~------fp~g~~-~~- 68 (231)
T pfam01791 17 ASADIKALVAEALEPGASAVCVNPGY------------------VALAARLLGKV--DIALVIG------FPAGTY-LT- 68 (231)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECHHH------------------HHHHHHHHCCC--CEEEEEE------ECCCCC-CC-
T ss_conf 76899999999998799989987899------------------99999986579--8369997------479887-76-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCE---EEC-CCCCCCH-------HHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf 654462899999999999999628973---524-6676779-------99999999877885773003366643543010
Q gi|255764463|r 146 DGEIVNDETIELISHAAVIQADAGADI---IAP-SEMMDGR-------VQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337)
Q Consensus 146 ~g~IdND~Tl~~L~k~Al~~A~AGaDi---vAP-SdMMDGr-------V~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337)
.. ++-+.+.-.+-.-.+.|||- |.+ +..-+|. ++.++++-...+. .+.++.|.
T Consensus 69 --~~---k~~~~~~~ev~~Ai~~GAdeid~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-kvIiE~~~---------- 132 (231)
T pfam01791 69 --PV---KGRDVLVAEAEEAIALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEACHGEGL-KVILEAYL---------- 132 (231)
T ss_pred --CC---CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEEE----------
T ss_conf --55---431002887999998799889999724657895599999999999986310487-08999851----------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH----HHHHHHHHHHHHC---CCCEEEEECCH
Q ss_conf 1675310244677774431572114788988887664089879955311----4589999999624---99899993461
Q gi|255764463|r 215 YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL----PYLDVCFRIKEKF---GLPTFAYQVSG 287 (337)
Q Consensus 215 FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~----~yLDii~~~k~~~---~~P~~aYqVSG 287 (337)
.++..+-+.++.+-..|.|.+ .+=|||+|=+..+. ....-++..++.. ++||- +||
T Consensus 133 -----------~~~~~~~~~~~~~i~~a~ria---~e~GaD~vKtstg~~~~gat~~~v~~~~~~~~~~~~~Vk---~sG 195 (231)
T pfam01791 133 -----------RGEEIKDKVDPHLVAKATRVG---AEAGADFVKTSTGFGERGATEEDVQIFKEVVGGAPPGVK---ASG 195 (231)
T ss_pred -----------CCCHHCCCCCHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE---EEC
T ss_conf -----------572100326899999999999---995999898157878887788899999998568787489---933
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 8999999998889788999999999997726999982018999
Q gi|255764463|r 288 EYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEA 330 (337)
Q Consensus 288 EYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~ 330 (337)
= ...+ ++. -.+|....+.+|||+.|=|-..+.+
T Consensus 196 G-------i~~~--~~~-~~l~~a~~~i~aGA~~~G~s~Gr~i 228 (231)
T pfam01791 196 G-------IKEK--DFL-RTVEDAIALIEAGADRIGVSAGRAI 228 (231)
T ss_pred C-------CCCC--CHH-HHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8-------6864--378-9999999999869981209998998
No 310
>PRK10537 voltage-gated potassium channel; Provisional
Probab=30.00 E-value=39 Score=15.33 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCEEEECH
Q ss_conf 9999999772699998201
Q gi|255764463|r 308 MESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 308 ~E~l~~~kRAGAd~IitY~ 326 (337)
.|...-+||||||.+|+=.
T Consensus 303 ~en~~KlrrAGAD~VISP~ 321 (356)
T PRK10537 303 SKNLEKIKRVHPDMIFSPQ 321 (356)
T ss_pred HHHHHHHHHHCCCEEECHH
T ss_conf 7579999862899998688
No 311
>pfam06110 DUF953 Eukaryotic protein of unknown function (DUF953). This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=30.00 E-value=45 Score=14.96 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---C-C-CEEEECCCCCHHHCC
Q ss_conf 889999999999998889367633025633455445421576537999999999730---1-4-479861332710011
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI---P-N-IGIITDVALDPFTIH 138 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f---p-d-l~vi~DVcLc~YT~h 138 (337)
.+.+.+.+.+++....|=+-+++|-+ .||++|. +|-||-. +|--.|++.| | + .+|.++|---||=-+
T Consensus 3 ~Gy~ef~~~~~~~~~~~~~vfv~F~g----~kd~~G~-SWCPDCv--~AePvi~~~f~~~~~~~~~i~v~VG~r~~Wkd 74 (119)
T pfam06110 3 LGFEEFNKAVKESENGSKPIFALFTG----SKDTTGE-SWCPDCV--RAEPVIREALKHAPEDCHFIYVDVGDRPYWKD 74 (119)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEC----CCCCCCC-CCCHHHH--HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 57999999999997379829999977----7799979-3690076--61488999998388885799999768271269
No 312
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.71 E-value=45 Score=14.93 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=18.1
Q ss_pred ECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 34618999999998889788999999999997726
Q gi|255764463|r 284 QVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAG 318 (337)
Q Consensus 284 qVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAG 318 (337)
.-||--+-.....+.|+--.+.-+.+.+.-+|+..
T Consensus 318 ~~SG~~~v~~~l~~~G~~l~~~~~~~i~~~vk~~a 352 (378)
T PRK11858 318 KHSGRHALKNKLKELGIELSREELQELLEKVKALS 352 (378)
T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57699999999997599999999999999999999
No 313
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=29.70 E-value=45 Score=14.92 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 328899999999999988893676330256334554454215765379999999997301447986
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIIT 128 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~ 128 (337)
+||.--.+.+.++++.+.|+..+++||--|.-.-+..|+ -.+.+.|++++.+. -|.+..|.
T Consensus 97 mry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s----~~~~~~~al~~~~~-~~~i~~I~ 157 (320)
T COG0276 97 MRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGS----YVDELARALKELRG-QPKISTIP 157 (320)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH----HHHHHHHHHHHCCC-CCCEEEEC
T ss_conf 347898689999999971987599997776302301899----99999999985378-98668816
No 314
>PRK06267 hypothetical protein; Provisional
Probab=29.65 E-value=45 Score=14.92 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCC
Q ss_conf 78632889999999999998889367633025633455445421576537999999999730144798613327100114
Q gi|255764463|r 60 PDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHG 139 (337)
Q Consensus 60 PGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hG 139 (337)
|--||.+.++++++++.+.++|.+.+.|=++- + |+. .-+++.++.||+ ++++.|..-+
T Consensus 58 p~ryR~s~EeIl~~A~~~~~~G~kt~vLqsGe-----d------yt~-eel~~ii~~IK~-i~~~avtLSl--------- 115 (324)
T PRK06267 58 PLKARRRPESILAEAIIMKRIGWKLEFISGGY-----G------YTT-EEINDIIEMISY-IQGSKQYLNV--------- 115 (324)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCEEEEECCC-----C------CCH-HHHHHHHHHHHH-HCCCCEEEEC---------
T ss_conf 66552899999999999998399979980487-----7------998-999999999986-0187169715---------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC------------CEEECCCCCCCHHHHHHHHHHHCCCCC-CCEE
Q ss_conf 3100136544628999999999999996289------------735246676779999999998778857-7300
Q gi|255764463|r 140 HDGILCDGEIVNDETIELISHAAVIQADAGA------------DIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIM 201 (337)
Q Consensus 140 HcGi~~~g~IdND~Tl~~L~k~Al~~A~AGa------------DivAPSdMMDGrV~aIR~~Ld~~g~~~-~~Im 201 (337)
|+... +.. ....+||+ .-|+|+...+.|+..++. |.+.||+- .++|
T Consensus 116 --G~~s~------e~~-------~~~~~aG~~~~lETan~~ly~~i~p~~s~e~Ri~~l~~-lk~~G~e~gsG~i 174 (324)
T PRK06267 116 --GIIDF------ENL-------NLNEIEGVVGAVETVNPKLHEELCPGKPLDKIKEMLKK-AKDLGLKTGITII 174 (324)
T ss_pred --CCCCH------HHH-------HHHHHCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHH-HHHCCCCEEEEEE
T ss_conf --87879------999-------77766370142414798887027999988999999999-9983983200468
No 315
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=29.62 E-value=11 Score=19.04 Aligned_cols=147 Identities=17% Similarity=0.287 Sum_probs=79.5
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCC------CC--
Q ss_conf 9988893676330256334554454215765379999999997301447986133271001143100136------54--
Q gi|255764463|r 77 VADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCD------GE-- 148 (337)
Q Consensus 77 ~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~------g~-- 148 (337)
...+.+..|+-.-++. .|+.+|.-....+ ++.|. --||-|.... +.|+.+. -.
T Consensus 100 ~~~l~~gd~i~v~G~v--~~t~~Gel~v~~~---------------~~~iL-sksl~plP~k-~~g~~d~e~r~r~RyLD 160 (491)
T PRK00484 100 FKKLDLGDIIGVEGTL--FKTKTGELSVKVT---------------ELTLL-TKSLRPLPDK-FHGLSDQETRYRQRYLD 160 (491)
T ss_pred HHCCCCCCEEEEEEEE--EECCCCEEEEECC---------------EEEEE-CCCCCCCCCC-CCCCCCHHHHCCCCCCC
T ss_conf 9606866689878799--8658851664033---------------17993-1688899854-44556755631133021
Q ss_pred -CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECHHHHHHHHHHCCHH---HHHHC-
Q ss_conf -462899999999999999628973524667677999999999877885--77300336664354301016---75310-
Q gi|255764463|r 149 -IVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPYVAKFNSSFYGPYR---DAIST- 221 (337)
Q Consensus 149 -IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsYsaKfaS~fYgPFR---dA~~S- 221 (337)
|-|+++.+.+..-+. -+.+||+.|+++||. +||||.-+.-=|++ .||. .|.+.
T Consensus 161 Li~n~~~~~~f~~Rs~------------------ii~~iR~~l~~~gF~EVeTPiL~~~~gGA~A--rpF~t~~n~l~~~ 220 (491)
T PRK00484 161 LIVNEESRETFRKRSK------------------IISAIRRFLDNRGFLEVETPMLQPIPGGAAA--RPFITHHNALDID 220 (491)
T ss_pred CCCCHHHHHHHHHHHH------------------HHHHHHHHHHHCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCC
T ss_conf 0279999999999999------------------9999999998676899867877666887566--7655644566855
Q ss_pred -----CCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf -----2446-------777744315721147889888876640898799553114589
Q gi|255764463|r 222 -----RDLL-------KGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLD 267 (337)
Q Consensus 222 -----~p~~-------~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLD 267 (337)
+|.+ .|=-|-||+-+.-+.|.++. ..-..+.|+-.=+.|.|
T Consensus 221 ~yL~~SPqLylk~l~vgG~ervfeI~r~FR~E~~~~-----rH~pEFT~lE~e~af~d 273 (491)
T PRK00484 221 LYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDT-----RHNPEFTMIEFYQAYAD 273 (491)
T ss_pred EEECCCHHHHHHHHHHCCCHHHEEHHHHHHCCCCCC-----CCCCCEEEEEEEEECCC
T ss_conf 442068789877787627202222487662575543-----41840102136772479
No 316
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=29.59 E-value=42 Score=15.18 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=95.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCCCEEE---
Q ss_conf 542157653799999999973014479861332710011431001365446--289999999999999962897352---
Q gi|255764463|r 100 GSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIV--NDETIELISHAAVIQADAGADIIA--- 174 (337)
Q Consensus 100 GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~Id--ND~Tl~~L~k~Al~~A~AGaDivA--- 174 (337)
-+.-|+..++-+.+|++||+..|++-|+.-+-=+ |-.++--...-..++ -..-++-|..+--.|.--|.||==
T Consensus 47 F~~~Wd~~~ltP~~V~~~K~~~pnvKV~iSiGG~--~v~~~~~~f~p~s~~~WV~NAv~SL~~iI~~Y~lDGIDIDyE~f 124 (253)
T cd06544 47 FNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGR--GVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHF 124 (253)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCC--CCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHC
T ss_conf 1233046774999999988529980599995687--56687211176207789999999999999970888611256544
Q ss_pred CCC--CCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 466--76779999999998778857-730033666435430101675310244677774431572114788988887664
Q gi|255764463|r 175 PSE--MMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 (337)
Q Consensus 175 PSd--MMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~ 251 (337)
|+| -----||.....|.+++-.. ++|-.+..- .+++|-+--.+-++ . -|-=.||.= .
T Consensus 125 ~~d~~tF~~cIG~LIt~LK~~~vI~~aSIAP~~~~-~q~~Y~~L~~~Y~~---~-IDyVnfQFy---------------~ 184 (253)
T cd06544 125 PADPDTFVECIGQLITELKNNGVIKVASIAPSEDA-EQSHYLALYNAYGD---Y-IDYVNYQFY---------------N 184 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCHHHHHHHHHCC---C-CCEEEEEEE---------------C
T ss_conf 68778999999999998730796689984555665-65378999986237---3-425888865---------------1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHC
Q ss_conf 0898799553114589999999624--99899993461899999999888978-8999999999997726
Q gi|255764463|r 252 ESADMLLVKPGLPYLDVCFRIKEKF--GLPTFAYQVSGEYAMIKAASLQGWIN-KNDAMMESLLAFKRAG 318 (337)
Q Consensus 252 EGAD~lMVKPa~~yLDii~~~k~~~--~~P~~aYqVSGEYami~~a~~~g~~d-~~~~~~E~l~~~kRAG 318 (337)
++... +--.|++.......++ +.=++.|.+-|+ ||.. -.+..+..+.-+|+-|
T Consensus 185 ~~~~t----t~~~~v~~~~~~~~~Y~~~kvL~sf~t~~~----------~~~~~~~~~F~~ac~~Lk~~~ 240 (253)
T cd06544 185 YGVPT----TVAKYVEFYDEVANNYPGKKVLASFSTDGE----------DGANIPGEIFIGGCKRLKKNG 240 (253)
T ss_pred CCCCC----CHHHHHHHHHHHHHHCCCCCEEEEEECCCC----------CCCCCCCCHHHHHHHHHHHCC
T ss_conf 68998----989999999999972799816766560588----------766468406889999887558
No 317
>KOG1885 consensus
Probab=29.03 E-value=32 Score=15.93 Aligned_cols=69 Identities=28% Similarity=0.363 Sum_probs=48.4
Q ss_pred EEECCCCCHHHCCCCCCCCC-C--------CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC-
Q ss_conf 98613327100114310013-6--------5446289999999999999962897352466767799999999987788-
Q gi|255764463|r 126 IITDVALDPFTIHGHDGILC-D--------GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH- 195 (337)
Q Consensus 126 vi~DVcLc~YT~hGHcGi~~-~--------g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~- 195 (337)
++--.||-+.- |-|-|+-+ + +-|.|.++.+.+..-|- -|..||+-||.-||
T Consensus 185 ~lLspcLh~lP-~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~Rak------------------II~~iRkfld~rgFl 245 (560)
T KOG1885 185 ILLSPCLHMLP-HEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAK------------------IISYIRKFLDSRGFL 245 (560)
T ss_pred HEECCHHCCCC-HHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH------------------HHHHHHHHHHHCCCE
T ss_conf 02052313487-66517776888999888998708889999999999------------------999999986544956
Q ss_pred -CCCCEECHHHHHHHHHHCCH
Q ss_conf -57730033666435430101
Q gi|255764463|r 196 -INVGIMPYVAKFNSSFYGPY 215 (337)
Q Consensus 196 -~~~~ImsYsaKfaS~fYgPF 215 (337)
..||||+--+- -+--.||
T Consensus 246 EVETPmmn~iaG--GA~AkPF 264 (560)
T KOG1885 246 EVETPMMNMIAG--GATAKPF 264 (560)
T ss_pred EECCHHHCCCCC--CCCCCCE
T ss_conf 844465525468--6325760
No 318
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=28.94 E-value=31 Score=16.01 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHC-CC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----CCCEEEEC
Q ss_conf 3114589999999624-99-899993461899999999888978899999999999772----69999820
Q gi|255764463|r 261 PGLPYLDVCFRIKEKF-GL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRA----GCDGIFTY 325 (337)
Q Consensus 261 Pa~~yLDii~~~k~~~-~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRA----GAd~IitY 325 (337)
++.+.-..|+++++.. .. -.....+||-=+.+ =|+++-+....+...-+++. |-+..++=
T Consensus 233 ~a~~~~P~i~~~~~~L~~~~Ga~~~~mSGSGstv-----Fglf~~~~~A~~a~~~l~~~~p~~~~~~~v~~ 298 (308)
T PRK02534 233 VVLPEYPQVAKLLELLSSLPGCLGTMMSGSGPTC-----FALFEDQEQAEQALEQVREAFADPGLDAWVCQ 298 (308)
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHH-----EEEECCHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 9887394999999999744798888997241000-----37978999999999999986789998689751
No 319
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=28.86 E-value=31 Score=16.02 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCC--CCEE-CHHHHHHHHHHCCHHH------HHHCCCCC-------CCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999999998778857--7300-3366643543010167------53102446-------77774431572114788988
Q gi|255764463|r 182 RVQEIRKKLDSHGHIN--VGIM-PYVAKFNSSFYGPYRD------AISTRDLL-------KGDKKTYYLDPANVQEAIRE 245 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~--~~Im-sYsaKfaS~fYgPFRd------A~~S~p~~-------~gdr~sYQmd~~n~~eA~~e 245 (337)
-+.+||+.|+++||.+ |||| ..+.-=|..|--|+|- |+--+|++ .|=-|=||+-+.-+.|-+|.
T Consensus 162 v~~~iR~~l~~~gF~EVETP~L~~stpEGArdflvPsr~~~~~fyaLpQSPQlyKQlLMvgG~dRyFqIarcFRdEd~r~ 241 (706)
T PRK12820 162 IIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRP 241 (706)
T ss_pred HHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCC
T ss_conf 99999999987798896687044567532457500244588765005668299999998628661799600112899998
Q ss_pred HHHHHHCCCCEEEECCCHHHHH
Q ss_conf 8876640898799553114589
Q gi|255764463|r 246 ASIDIQESADMLLVKPGLPYLD 267 (337)
Q Consensus 246 ~~~D~~EGAD~lMVKPa~~yLD 267 (337)
-.. ..+.|+-.=|.|.|
T Consensus 242 dRq-----PEFTqlDiEmSF~d 258 (706)
T PRK12820 242 NRQ-----PEFTQLDIEASFID 258 (706)
T ss_pred CCC-----CCEEEEEEEHHCCC
T ss_conf 879-----83406874213489
No 320
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.83 E-value=33 Score=15.88 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCCC--CCEECHHH
Q ss_conf 999999998778857--73003366
Q gi|255764463|r 183 VQEIRKKLDSHGHIN--VGIMPYVA 205 (337)
Q Consensus 183 V~aIR~~Ld~~g~~~--~~ImsYsa 205 (337)
+.+||+.||.+||.+ |||+.-|+
T Consensus 148 ~~~iR~~ld~~gF~EiETPiLtkST 172 (585)
T COG0173 148 TKAIRNFLDDQGFLEIETPILTKST 172 (585)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 9999997765498573467414679
No 321
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.77 E-value=47 Score=14.82 Aligned_cols=182 Identities=23% Similarity=0.249 Sum_probs=88.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCC
Q ss_conf 99999998889367633025633455-4454215765379999999997301-447986133271001143100136544
Q gi|255764463|r 72 EKIKQVADLGIPAIAIFPNIPMDLRN-NTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEI 149 (337)
Q Consensus 72 ~eie~~~~lGI~av~LFp~I~~~~Kd-~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~I 149 (337)
+|.-++.+-|-.-| +.|+ .+||-.-| .+-.||.|++-.| +..|-+-+-=-||.. |
T Consensus 11 eEA~eAieGGAdIi--------DVKNP~EGSLGAN----FPWvIr~i~Ev~p~d~~vSAT~GDvpYKP---------G-- 67 (235)
T COG1891 11 EEAIEAIEGGADII--------DVKNPAEGSLGAN----FPWVIREIREVVPEDQEVSATVGDVPYKP---------G-- 67 (235)
T ss_pred HHHHHHHHCCCCEE--------ECCCCCCCCCCCC----CHHHHHHHHHHCCCCEEEEEEECCCCCCC---------C--
T ss_conf 99999861788667--------4268465766688----70799999975856635324306778898---------5--
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEC-----------CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf 62899999999999999628973524-----------6676779999999998778857730033666435430101675
Q gi|255764463|r 150 VNDETIELISHAAVIQADAGADIIAP-----------SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA 218 (337)
Q Consensus 150 dND~Tl~~L~k~Al~~A~AGaDivAP-----------SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA 218 (337)
| .+..|+-.|-+|||.+-- -+||.+-|.+.|+. ++|.|---+=|+-..-
T Consensus 68 ----T---~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~------------d~~k~VVAaGYaDa~R- 127 (235)
T COG1891 68 ----T---ASLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDF------------DPSKKVVAAGYADAHR- 127 (235)
T ss_pred ----H---HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC------------CCCCEEEECCCCCHHH-
T ss_conf ----4---8899887675077647873023665999999999999998613------------8774488614430121-
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHH-HHHHHHH
Q ss_conf 310244677774431572114788988887664089879955311458999999962499899993461899-9999998
Q gi|255764463|r 219 ISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYA-MIKAASL 297 (337)
Q Consensus 219 ~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYa-mi~~a~~ 297 (337)
++| .+|-.-- +.-.+-|+|+.||-.|. ++-|. +|-++--+|-. .+..|-.
T Consensus 128 vgs------------v~Pl~~P------~vaa~ag~DvaMvDTai------KDGks-----lFdfm~~e~l~eFvd~Ah~ 178 (235)
T COG1891 128 VGS------------VSPLLLP------EVAAEAGADVAMVDTAI------KDGKS-----LFDFMDEEELEEFVDLAHE 178 (235)
T ss_pred CCC------------CCCCCCH------HHHHHCCCCEEEEECCC------CCCHH-----HHHHHCHHHHHHHHHHHHH
T ss_conf 167------------6823117------88986389889875000------36516-----7755059999999999987
Q ss_pred CCCCCHH--HHHHHHHHHHHHHCCCEEEEC
Q ss_conf 8897889--999999999977269999820
Q gi|255764463|r 298 QGWINKN--DAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 298 ~g~~d~~--~~~~E~l~~~kRAGAd~IitY 325 (337)
.|+-.-- ..-.|.+-.+|+-|+|+|=--
T Consensus 179 hGL~~AlAGs~~~ehlp~l~eig~DivGvR 208 (235)
T COG1891 179 HGLEVALAGSLKFEHLPILKEIGPDIVGVR 208 (235)
T ss_pred CCHHHHHCCCCCCCCCHHHHHHCCCEEEEC
T ss_conf 245877504455000527887188735520
No 322
>KOG2775 consensus
Probab=28.60 E-value=47 Score=14.80 Aligned_cols=128 Identities=17% Similarity=0.168 Sum_probs=61.0
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCCHHHCCCCCCCCCCC-CCCHH
Q ss_conf 999888936763302563345544542157653799999999973014--479861332710011431001365-44628
Q gi|255764463|r 76 QVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN--IGIITDVALDPFTIHGHDGILCDG-EIVND 152 (337)
Q Consensus 76 ~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd--l~vi~DVcLc~YT~hGHcGi~~~g-~IdND 152 (337)
-+.+.|+++-+-||-- .--+.+..-|-||. +| ++-.-|||---|-+|=.--|++-- .+--+
T Consensus 126 li~e~gl~aGi~FPtG---~SlN~cAAHyTpNa-------------Gd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F~ 189 (397)
T KOG2775 126 LILENGLNAGIGFPTG---CSLNHCAAHYTPNA-------------GDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAFN 189 (397)
T ss_pred HHHHCCCCCCCCCCCC---CCCCCHHHHCCCCC-------------CCCEEEEECCEEEEECCCCCCCEEEEEEEEEEEC
T ss_conf 9874551027667776---66210343068999-------------9834642065688740211067275345688607
Q ss_pred ---HHHHHHHHHHHH--HHHCCCCEEECCCCCCCHHH-HHHHHHHHCCCCCCCEECHHHHHHHHHH----CCHHHHHH-C
Q ss_conf ---999999999999--99628973524667677999-9999998778857730033666435430----10167531-0
Q gi|255764463|r 153 ---ETIELISHAAVI--QADAGADIIAPSEMMDGRVQ-EIRKKLDSHGHINVGIMPYVAKFNSSFY----GPYRDAIS-T 221 (337)
Q Consensus 153 ---~Tl~~L~k~Al~--~A~AGaDivAPSdMMDGrV~-aIR~~Ld~~g~~~~~ImsYsaKfaS~fY----gPFRdA~~-S 221 (337)
..|-.-++-|.. .-+||.|+--- -|| +|.+.+.+-. ..+.=-+|-+|=.+++- +|||=-+| |
T Consensus 190 p~~d~Ll~AvreaT~tGIkeaGiDvRlc------diG~aiqEVmeSyE-vEi~Gk~~~VKpIrnLnGHSI~~yrIH~gks 262 (397)
T KOG2775 190 PKYDPLLAAVREATNTGIKEAGIDVRLC------DIGEAIQEVMESYE-VEINGKTYQVKPIRNLNGHSIAQYRIHGGKS 262 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEH------HHHHHHHHHHHHEE-EEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 5520899999988750265528402321------03688999766307-8767816200013135787433247625833
Q ss_pred CCCCC
Q ss_conf 24467
Q gi|255764463|r 222 RDLLK 226 (337)
Q Consensus 222 ~p~~~ 226 (337)
-|..+
T Consensus 263 VPiVk 267 (397)
T KOG2775 263 VPIVK 267 (397)
T ss_pred CCEEC
T ss_conf 22244
No 323
>PRK02227 hypothetical protein; Provisional
Probab=28.41 E-value=48 Score=14.78 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999988893
Q gi|255764463|r 72 EKIKQVADLGIP 83 (337)
Q Consensus 72 ~eie~~~~lGI~ 83 (337)
+|+..+.+.|+-
T Consensus 11 ~EA~~a~~~gaD 22 (239)
T PRK02227 11 EEALEALEGGAD 22 (239)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999857999
No 324
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.32 E-value=48 Score=14.77 Aligned_cols=213 Identities=19% Similarity=0.169 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC
Q ss_conf 88999999999999888936763302563345544542157653---799999999973014479861332710011431
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN---LINEGICAIKKNIPNIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg---lv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc 141 (337)
++.+.+++.+++.++.|..-+=+ |+ ++ +--|+.-..++- =+--.|+.|++.| ++.|=.| .|..
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDI-Gg--eS--TrPga~~vs~eeE~~Rl~pvi~~i~~~~-~v~iSID----T~~~---- 100 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDV-GG--ES--TRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVD----TSKP---- 100 (282)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE-CC--CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEE----CCCH----
T ss_conf 89999999999999889969997-98--25--8998986898999999999999999735-9729997----9988----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHH
Q ss_conf 0013654462899999999999999628973524-667677999999999877885773003366643543010167531
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAIS 220 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP-SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~ 220 (337)
+.|-.-.++|||||-= |...|- .+-+..-+.+ ..+.+| ++ .
T Consensus 101 ------------------~Va~~ale~Ga~iINDIsg~~d~---~~~~~va~~~-~~~vlm-H~---------------~ 142 (282)
T PRK11613 101 ------------------EVIRESAKAGAHIINDIRSLSEP---GALEAAAETG-LPVCLM-HM---------------Q 142 (282)
T ss_pred ------------------HHHHHHHHCCCCEEECCCCCCCH---HHHHHHHHCC-CCEEEE-EC---------------C
T ss_conf ------------------99999996397888663212486---5999999729-988998-06---------------8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHCCC--CEEEECCCHH-------HHHHHHHHHHH--CCCCEEEEECCH
Q ss_conf 02446777744315721147889888876--64089--8799553114-------58999999962--499899993461
Q gi|255764463|r 221 TRDLLKGDKKTYYLDPANVQEAIREASID--IQESA--DMLLVKPGLP-------YLDVCFRIKEK--FGLPTFAYQVSG 287 (337)
Q Consensus 221 S~p~~~gdr~sYQmd~~n~~eA~~e~~~D--~~EGA--D~lMVKPa~~-------yLDii~~~k~~--~~~P~~aYqVSG 287 (337)
..|..-.+...|. |+-..-....+...+ .+-|- +=+++-||+- .+.+++.+..- ++.|+.+ -+|-
T Consensus 143 g~p~~m~~~~~y~-dvi~~v~~~f~~~i~~~~~~Gi~~~~IilDPGiGFgK~~~~n~~ll~~l~~~~~lg~PiLv-G~SR 220 (282)
T PRK11613 143 GNPKTMQEAPKYD-DVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLV-GMSR 220 (282)
T ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECH
T ss_conf 9985533267635-2799999999999999998799947499806877678878899999838998537998799-7047
Q ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 899999999888978--89999999999977269999820189999998
Q gi|255764463|r 288 EYAMIKAASLQGWIN--KNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 288 EYami~~a~~~g~~d--~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
=+||.......--+ .-.+..+. .++. .||++|=+-=.++..+-+
T Consensus 221 -Ksfig~~~~~~~~eRl~gTla~~~-~a~~-~Ga~ilRVHDV~e~~~ai 266 (282)
T PRK11613 221 -KSMIGQLLNVGPSERLSGSLACAV-IAAM-QGAQIIRVHDVKETVEAM 266 (282)
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHH-HHHH-CCCCEEEECCHHHHHHHH
T ss_conf -789998718996870379999999-9998-799999958989999999
No 325
>pfam01129 ART NAD:arginine ADP-ribosyltransferase.
Probab=28.27 E-value=19 Score=17.52 Aligned_cols=36 Identities=14% Similarity=0.464 Sum_probs=27.3
Q ss_pred CCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 77300336664354301016753102446777744315721
Q gi|255764463|r 197 NVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPA 237 (337)
Q Consensus 197 ~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~ 237 (337)
.+.||.|+. .|.+|-+|-.|+-++. ..|..|--.+.
T Consensus 66 ~iAi~aYT~--~~~~y~~FN~Avr~ag---~S~~~Y~~~F~ 101 (222)
T pfam01129 66 GIALLAYTS--SSPLYREFNEAVREAG---RSREHYLHNFH 101 (222)
T ss_pred EEEEEEECC--CCHHHHHHHHHHHHCC---CCHHHHHCCCC
T ss_conf 899999828--8658999999999717---89789731785
No 326
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=28.22 E-value=48 Score=14.76 Aligned_cols=214 Identities=14% Similarity=0.107 Sum_probs=96.6
Q ss_pred CHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCC---------CCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 988999863477888773311666758988110488878632---------88999999999999888936763302563
Q gi|255764463|r 23 SNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMR---------MSIDVAVEKIKQVADLGIPAIAIFPNIPM 93 (337)
Q Consensus 23 ~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R---------~Sid~L~~eie~~~~lGI~av~LFp~I~~ 93 (337)
-+.+++++..-.+.+=+ .+=+-++|..+=+-+|++.|..-. ||.+.+.+-|+.+.+.||+-|-=+ =+|-
T Consensus 17 ~~~ik~~id~ma~~KlN-~lH~HLtDdqgwrlei~~~P~Lt~~Ga~~~~~~YT~~d~~eiv~yA~~rgI~viPEi-D~PG 94 (348)
T cd06562 17 VDSIKRTIDAMAYNKLN-VLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI-DTPG 94 (348)
T ss_pred HHHHHHHHHHHHHHCCC-EEEEEEECCCCCEEECCCCCCHHHCCCCCCCCEECHHHHHHHHHHHHHCCCEEEECC-CCCH
T ss_conf 99999999999983895-678857648886431688702432378898872769999999999997598896547-8850
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----
Q ss_conf 3455445421576537999999999730144798613327100-1143100136544628999999999999996-----
Q gi|255764463|r 94 DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT-IHGHDGILCDGEIVNDETIELISHAAVIQAD----- 167 (337)
Q Consensus 94 ~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT-~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~----- 167 (337)
+. ++.-+.+|++..-+. -.+... .+..+|.+ .+.|++|.+.|.+.---.++
T Consensus 95 H~-------------------~a~~~~~p~l~~~~~-~~~~~~~~~~~~~~L---dp~~~~t~~fl~~vl~Ev~~lFp~~ 151 (348)
T cd06562 95 HT-------------------GSWGQGYPELLTGCY-AVWRKYCPEPPCGQL---NPTNPKTYDFLKTLFKEVSELFPDK 151 (348)
T ss_pred HH-------------------HHHHHHCHHHCCCCC-CCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 35-------------------789985866417877-766674447887521---7897569999999999999857766
Q ss_pred ---CCCCEEECCCCCCCHHHHHHHHHHHCCCCC-CCEECHHHHHHHHHH---C----CHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ---289735246676779999999998778857-730033666435430---1----01675310244677774431572
Q gi|255764463|r 168 ---AGADIIAPSEMMDGRVQEIRKKLDSHGHIN-VGIMPYVAKFNSSFY---G----PYRDAISTRDLLKGDKKTYYLDP 236 (337)
Q Consensus 168 ---AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~-~~ImsYsaKfaS~fY---g----PFRdA~~S~p~~~gdr~sYQmd~ 236 (337)
-|.|=|....=- .--++++.+.++|.++ ..+.+|=..-.+.+- | -+-|++...+.. -++.+-=+--
T Consensus 152 yiHiGGDEv~~~~W~--~~p~~~~~m~~~g~~~~~~lq~~F~~~~~~~l~~~Gk~~i~W~e~~~~~~~~-~~~~~vv~~W 228 (348)
T cd06562 152 YFHLGGDEVNFNCWN--SNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGVYL-LPKDTIVQVW 228 (348)
T ss_pred EEEECCCCCCHHHHC--CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCC-CCCCEEEEEE
T ss_conf 366267446555541--6788999999729999999999999999999997598178732210167777-9997299970
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH
Q ss_conf 11478898888766408987995531145899
Q gi|255764463|r 237 ANVQEAIREASIDIQESADMLLVKPGLPYLDV 268 (337)
Q Consensus 237 ~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDi 268 (337)
++... ...=.+.|-+.||--..-.|||.
T Consensus 229 ~~~~~----~~~~~~~G~~vI~s~~~~~YlD~ 256 (348)
T cd06562 229 GGSDE----LKNVLAAGYKVILSSYDFWYLDC 256 (348)
T ss_pred CCCHH----HHHHHHCCCCEEEECCCCEEEEC
T ss_conf 69439----99999839989981898578726
No 327
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=28.01 E-value=32 Score=15.96 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=22.5
Q ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 999996249989999346189999999-988897889999999999977269999820189999998
Q gi|255764463|r 269 CFRIKEKFGLPTFAYQVSGEYAMIKAA-SLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 269 i~~~k~~~~~P~~aYqVSGEYami~~a-~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
||.+..++.--+....- ..|..+... ..+|-.+++.--.=+..+|.+ .++|-..+++||
T Consensus 128 iRAAAKN~~~V~v~~dp-~dY~~~i~~l~~~g~~~~~~R~~lA~kAF~~------ta~YD~~I~~~L 187 (187)
T cd01421 128 LRAAAKNYKDVTVLVDP-ADYQKVLEELKSNGSISEETRRRLALKAFAH------TAEYDAAISNYL 187 (187)
T ss_pred HHHHHHCCCCEEEECCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHC
T ss_conf 99998268812876799-9999999999976999999999999999999------999999999639
No 328
>TIGR02783 TrbL_P P-type conjugative transfer protein TrbL; InterPro: IPR014150 This entry represents TrbL, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer , . TrbL is a homologue of the F-type TraG protein (which is believed to be a mating pair stabilisation pore-forming protein, IPR012931 from INTERPRO) as well as the vir system VirB6 protein ..
Probab=27.98 E-value=37 Score=15.50 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH-----HHHHHHCC---CCCCCEEC--HHHHHHHH
Q ss_conf 9999999999999962897352466767799999-----99998778---85773003--36664354
Q gi|255764463|r 153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEI-----RKKLDSHG---HINVGIMP--YVAKFNSS 210 (337)
Q Consensus 153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aI-----R~~Ld~~g---~~~~~Ims--YsaKfaS~ 210 (337)
.|+..+...|...-++-+|.+.|++|-|-=+..- ++.+|+.. ..=..|-| +|+-|.|+
T Consensus 88 nsl~~~ga~a~g~~~~~adf~sP~~~~~~g~~~~lGiv~~~~~~~~~n~~~~F~~~fSGnfsaafssa 155 (351)
T TIGR02783 88 NSLAQIGAGALGLSESEADFLSPGNIFDVGLDIALGIVLSKVLDSASNLGNGFSSIFSGNFSAAFSSA 155 (351)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 99999887520011001112484899999999999999999999886410322454302567777531
No 329
>pfam00933 Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain.
Probab=27.90 E-value=30 Score=16.16 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=15.2
Q ss_pred HHHHHHCCCCEEEEEECCCCCC--CCCCCCCCCCCC
Q ss_conf 9999988893676330256334--554454215765
Q gi|255764463|r 74 IKQVADLGIPAIAIFPNIPMDL--RNNTGSHIIDPD 107 (337)
Q Consensus 74 ie~~~~lGI~av~LFp~I~~~~--Kd~~GseA~n~d 107 (337)
.+++..+||+- .+-|+++-.. ....+.++|.+|
T Consensus 55 a~el~~~Gin~-~~aPv~Dv~~~~~~~r~~rsfgeD 89 (225)
T pfam00933 55 GEEARAKGIDV-ILAPVVDLGRDPRWGRNFESFSED 89 (225)
T ss_pred HHHHHHCCCCE-EECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999809987-614652577788765121344788
No 330
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.86 E-value=49 Score=14.71 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 899999999999999628973524
Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
++.++..++.|...-+||.|.|--
T Consensus 140 ~~ii~~f~~AA~rA~~AGfDgVEi 163 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEI 163 (353)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999999839998997
No 331
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=27.81 E-value=49 Score=14.71 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 788988887664-089879955311458999999962499899
Q gi|255764463|r 240 QEAIREASIDIQ-ESADMLLVKPGLPYLDVCFRIKEKFGLPTF 281 (337)
Q Consensus 240 ~eA~~e~~~D~~-EGAD~lMVKPa~~yLDii~~~k~~~~~P~~ 281 (337)
.+.+.++..... +|||.+|.-==.+..-.=+.+++.+++||.
T Consensus 164 ~~~l~~Aa~~L~~~gadlivLDCiGYt~~~r~~~~~~~g~PVi 206 (221)
T pfam07302 164 EDRLEEAARELLDQGADLIVLDCIGYTQAMKDMLQEALGKPVL 206 (221)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf 8999999999997598999998877749999999998699999
No 332
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase; InterPro: IPR006269 These sequences describe 2-dehydro-3-deoxyphosphooctonate aldolase. Alternate names include 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate. phosphoenolpyruvate + D-arabinose 5-phosphate + H_2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. ; GO: 0008676 3-deoxy-8-phosphooctulonate synthase activity, 0008152 metabolic process, 0005737 cytoplasm.
Probab=27.76 E-value=49 Score=14.70 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=77.4
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHH----H-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHH--HHHH
Q ss_conf 1166675898811048887863288999999999999----8-8893676330256334554454215765379--9999
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVA----D-LGIPAIAIFPNIPMDLRNNTGSHIIDPDNLI--NEGI 114 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~----~-lGI~av~LFp~I~~~~Kd~~GseA~n~dglv--~rAI 114 (337)
.|+|+--|.++-| |.|.+++.++++. + +||+ .+| +-.=+|=+=+-.++|.--|+. -+.+
T Consensus 1 ~~f~LiAGPCvIE-----------S~d~~L~~A~~l~~~~~k~~gi~--fiF-KsSFDKANRtS~~SfRGpGle~GL~iL 66 (279)
T TIGR01362 1 EKFFLIAGPCVIE-----------SEDHALRIAEKLKELTSKSLGIP--FIF-KSSFDKANRTSINSFRGPGLEEGLKIL 66 (279)
T ss_pred CCCEEECCCCHHH-----------HHHHHHHHHHHHHHHHHHCCCCC--CEE-ECCCHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 9840642877535-----------68999999888776631202667--457-234101232110243688878999999
Q ss_pred HHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH---HHHHHCCC-------CEEECCCCC
Q ss_conf 999973014479861332710011431001365446289999999999---99996289-------735246676
Q gi|255764463|r 115 CAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAA---VIQADAGA-------DIIAPSEMM 179 (337)
Q Consensus 115 r~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~A---l~~A~AGa-------DivAPSdMM 179 (337)
+++|++| ++-|+|||= +.=||-.+.+ .+|-=..=.-||+|- +.-|+-|. ..+||.||-
T Consensus 67 ~kvK~~f-G~pi~TDVH-----E~~q~~~vAe-VvDilQiPAFLCRQTDLl~AaA~TG~ivNvKKGQFLsP~dM~ 134 (279)
T TIGR01362 67 QKVKEEF-GVPILTDVH-----ESSQAEPVAE-VVDILQIPAFLCRQTDLLVAAAKTGKIVNVKKGQFLSPWDMK 134 (279)
T ss_pred HHHHHHC-CCCCCCCCC-----CCHHHHHHCE-EEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH
T ss_conf 9865652-897023547-----7210220041-300110661321146899999823986860588638712115
No 333
>pfam06850 PHB_depo_C PHB de-polymerase C-terminus. This family represents the C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=27.68 E-value=32 Score=15.91 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=31.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 7995531145899999996249989999346189999
Q gi|255764463|r 256 MLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMI 292 (337)
Q Consensus 256 ~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami 292 (337)
-+|==||-+|||.|+.+=++..+|-+-+.|-|+=--+
T Consensus 93 avmDlpaefYL~Tv~~VFqe~~L~~G~~~~~G~~Vd~ 129 (203)
T pfam06850 93 AVMDLTAEFYLQTVDTVFQEHALPQGEFTHRGRPVDL 129 (203)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCEECCH
T ss_conf 7706969999999999998482557805789998268
No 334
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=27.64 E-value=49 Score=14.69 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCCEEEECCCCCEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 31166675898811048887863288-9999999999998889367633
Q gi|255764463|r 41 ILPIFLTSGEKTVESINSMPDVMRMS-IDVAVEKIKQVADLGIPAIAIF 88 (337)
Q Consensus 41 I~PiFV~eg~~~k~~I~SMPGv~R~S-id~L~~eie~~~~lGI~av~LF 88 (337)
+-|-+|+=-++.++++.|=-|-.--+ .+.|.+.++++.+.||+ |-||
T Consensus 83 ~kP~qvtLVPE~r~elTTegGld~~~~~~~L~~~i~~lk~~gir-vSlF 130 (239)
T pfam03740 83 TKPHQVTLVPEKREEITTEGGLDVVAQLEKLKPAIRRLKNAGIR-VSLF 130 (239)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE-EEEE
T ss_conf 49985898889998735688806334068999999998607853-8997
No 335
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=27.61 E-value=9.3 Score=19.58 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCC--CCCEECHHHH-HHHHHHCCHHH------HHHCCCCC-------CCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999877885--7730033666-43543010167------53102446-------77774431572114788988
Q gi|255764463|r 182 RVQEIRKKLDSHGHI--NVGIMPYVAK-FNSSFYGPYRD------AISTRDLL-------KGDKKTYYLDPANVQEAIRE 245 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~--~~~ImsYsaK-faS~fYgPFRd------A~~S~p~~-------~gdr~sYQmd~~n~~eA~~e 245 (337)
-+.+||+.|+++||. +||||.-|+- =|.-|.=|+|- |+.-+|.+ .|=.|-||+-|.-+.|.++.
T Consensus 148 i~~~iR~fl~~~gFiEVeTPiL~~s~~eGA~~F~vpsr~~~~~fyaL~qSPQLykq~L~vgG~erVyeig~~FRnE~~~t 227 (587)
T PRK00476 148 VTSAIRNFLDDNGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRA 227 (587)
T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 99999999997597400475432568666644301310578855135679799999988517552799643123888876
Q ss_pred HHHHHHCCCCEEEECCCHHHH
Q ss_conf 887664089879955311458
Q gi|255764463|r 246 ASIDIQESADMLLVKPGLPYL 266 (337)
Q Consensus 246 ~~~D~~EGAD~lMVKPa~~yL 266 (337)
-. -+.+.|+-+=|.|.
T Consensus 228 ~r-----~pEFt~lE~E~af~ 243 (587)
T PRK00476 228 DR-----QPEFTQIDIEMSFV 243 (587)
T ss_pred CC-----CCHHHEEEHHHHCC
T ss_conf 66-----82342311111116
No 336
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=27.60 E-value=39 Score=15.39 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCHHHHHHHHCCC
Q ss_conf 511266557888585631-28988999863477
Q gi|255764463|r 3 NTNAISHKICCHRRMRRN-RKSNWIREMVREHR 34 (337)
Q Consensus 3 ~~~~is~~~~p~~R~RRl-R~~~~iR~Lv~Et~ 34 (337)
++++...+..|++|..++ ..+.++|++++|-.
T Consensus 19 kvTk~~~~~r~s~rkg~~~k~~kfVR~iirEV~ 51 (104)
T PTZ00196 19 VTTRRPRQPSSNDRYAVPHKKLRAVKAIIADLV 51 (104)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 257788888855456752156899999999984
No 337
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=27.50 E-value=8 Score=20.01 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 88786328899999----99999998889367633025633455445421576537999999999730144798613327
Q gi|255764463|r 58 SMPDVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 (337)
Q Consensus 58 SMPGv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc 133 (337)
..-|+.|-..|..- +...++++.|.=.=-+.|+..++.+.-.-.|...+ +.....+.++|-.|..-+.+
T Consensus 181 ~~~gIsRe~qD~~A~~Sh~rA~~A~~~G~f~~EIvPv~~~~~~~~~~De~~R~-~tt~e~La~L~P~F~~~Gtv------ 253 (405)
T PRK07851 181 QLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSKDDGPRA-GTTYEAVSQLKPVFRPDGTV------ 253 (405)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEECCCCCC-CCCHHHHHHCCCCCCCCCCE------
T ss_conf 98698999999999999999999886598602145676289978981477226-88866685078641568867------
Q ss_pred HHHCCCCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC--CCCEECH
Q ss_conf 10011431001365----44628999999999----99999628973524667677999999999877885--7730033
Q gi|255764463|r 134 PFTIHGHDGILCDG----EIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI--NVGIMPY 203 (337)
Q Consensus 134 ~YT~hGHcGi~~~g----~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~--~~~ImsY 203 (337)
+.|++--+.|| -+-..+..+.|.-. -+.++.+|+| |..|--|-|.+||++|+.+|.+ |+-+.--
T Consensus 254 ---TAgNaS~~~DGAAavll~se~~a~~~gl~Plari~~~~~~g~d---P~~m~~~Pv~A~~~~L~~agl~~~Did~~Ei 327 (405)
T PRK07851 254 ---TAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLS---PEIMGLGPIEASKQALARAGMTIDDIDLVEI 327 (405)
T ss_pred ---ECCCCCCCCCHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCC---HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf ---5543786543469988727999997799815999954005648---7884618899999999976998024875564
Q ss_pred HHHHHHHH
Q ss_conf 66643543
Q gi|255764463|r 204 VAKFNSSF 211 (337)
Q Consensus 204 saKfaS~f 211 (337)
--=||+.-
T Consensus 328 nEAFA~q~ 335 (405)
T PRK07851 328 NEAFAVQV 335 (405)
T ss_pred EHHHHHHH
T ss_conf 06678889
No 338
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=27.15 E-value=50 Score=14.63 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 3114589999999624-99899993461899999999888978
Q gi|255764463|r 261 PGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWIN 302 (337)
Q Consensus 261 Pa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d 302 (337)
|.+.=||+++.+++.. ..||..---.++-..++.|-..|..|
T Consensus 60 Pd~~Glell~~lR~~~~~~~VI~ITa~~d~~~v~~Al~~Ga~D 102 (239)
T PRK10430 60 QQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVD 102 (239)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCHH
T ss_conf 9997899999999858998199997268899999999839503
No 339
>KOG1349 consensus
Probab=26.96 E-value=43 Score=15.06 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCCCCCEECHHHHHHH---HHHCCHHHHHHCCCCCCC-CCCCCCCCC
Q ss_conf 9999998778857730033666435---430101675310244677-774431572
Q gi|255764463|r 185 EIRKKLDSHGHINVGIMPYVAKFNS---SFYGPYRDAISTRDLLKG-DKKTYYLDP 236 (337)
Q Consensus 185 aIR~~Ld~~g~~~~~ImsYsaKfaS---~fYgPFRdA~~S~p~~~g-dr~sYQmd~ 236 (337)
+|.+.-++.-|....+|-=++.=+| -||.|=-=|++|+. .| +--||+.|+
T Consensus 170 ai~qm~e~~Ryneil~miDTCQaasly~~~~sPNVLav~SS~--~ge~SySh~~d~ 223 (309)
T KOG1349 170 AIQQMWEKKRYNEILFMIDTCQAASLYERFYSPNVLAVASSL--VGEPSYSHHSDS 223 (309)
T ss_pred HHHHHHHHHHHCEEEEEEECCCHHHHHHHHCCCCEEEEEECC--CCCCCCCCCCCC
T ss_conf 999999863232489983211067788751389758974122--587532347874
No 340
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=26.92 E-value=51 Score=14.60 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCHHH----------CCCCCCCCCCC-CCCHHHH-HHHHHHHHHHHHHCCCCEEE
Q ss_conf 537999999999730144798613327100----------11431001365-4462899-99999999999962897352
Q gi|255764463|r 107 DNLINEGICAIKKNIPNIGIITDVALDPFT----------IHGHDGILCDG-EIVNDET-IELISHAAVIQADAGADIIA 174 (337)
Q Consensus 107 dglv~rAIr~IK~~fpdl~vi~DVcLc~YT----------~hGHcGi~~~g-~IdND~T-l~~L~k~Al~~A~AGaDivA 174 (337)
.|+..-.|-.|-+..+ .-++=+=+|||- .||-+=+++|| +.|-|-- -|+.. +.+.-.
T Consensus 16 KGi~~aSig~ll~~~g--~~v~~~K~DpYlNvD~Gtm~P~eHGEVfV~~DG~EtDlDlG~YERFl---------~~~l~~ 84 (275)
T pfam06418 16 KGITAASLGRLLKSRG--LKVTIQKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFL---------DINLTK 84 (275)
T ss_pred CHHHHHHHHHHHHHCC--CEEEEEECCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHC---------CCCCCC
T ss_conf 1899999999999679--63678741563123888778331560787378740147675234314---------777566
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 46676779999999998778857730033666435430101675310244677774431572114788988887664089
Q gi|255764463|r 175 PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 (337)
Q Consensus 175 PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGA 254 (337)
-+.+--|+|-. +.+++ +-- ..+. -+|-|+-|+-.+|=.+-+..-..+++
T Consensus 85 ~~niTtGkiy~--~Vi~k------------------------ER~---G~YL--GkTVQvIPHiTdeIk~~I~~~a~~~~ 133 (275)
T pfam06418 85 DNNITTGKIYS--SVIEK------------------------ERR---GDYL--GKTVQVIPHITDEIKERIRRVAAKGA 133 (275)
T ss_pred CCCCCCHHHHH--HHHHH------------------------HHC---CCCC--CCCEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 66634018899--99988------------------------755---6758--97158778856999999998556789
Q ss_pred CEEEECCC--------HHHHHHHHHHHHHCCC-CEEEE--------ECCHHH
Q ss_conf 87995531--------1458999999962499-89999--------346189
Q gi|255764463|r 255 DMLLVKPG--------LPYLDVCFRIKEKFGL-PTFAY--------QVSGEY 289 (337)
Q Consensus 255 D~lMVKPa--------~~yLDii~~~k~~~~~-P~~aY--------qVSGEY 289 (337)
|+++|.=| +|||.-||+++..... -++-- ..+||.
T Consensus 134 Di~ivEiGGTVGDIEs~pFlEAiRQl~~~~g~~n~~fiHvtlvP~l~~~gE~ 185 (275)
T pfam06418 134 DVVIVEIGGTVGDIESLPFLEAIRQFRLEVGRENVLFIHVTLVPYLKAAGEL 185 (275)
T ss_pred CEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCC
T ss_conf 7899975760100102289999999988728775699998732443688754
No 341
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=26.88 E-value=37 Score=15.50 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHHHH
Q ss_conf 9962897352466767799999999987788--57730033666435430
Q gi|255764463|r 165 QADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSSFY 212 (337)
Q Consensus 165 ~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~fY 212 (337)
++.+|+| |.+|.-|-|.++|+.|+.+|. .|+-+.-.---||+.--
T Consensus 10 ~~~~g~~---P~~~~~ap~~A~~~lL~r~gl~~~Did~~EinEAFA~~~l 56 (123)
T pfam02803 10 YATVGVD---PAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQAL 56 (123)
T ss_pred EEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEEEECHHHHHHHH
T ss_conf 9998459---8896136999999999982998554664564145677789
No 342
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=26.72 E-value=51 Score=14.58 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=82.8
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 898811048887863288999999----9999998889367633025633455445421576537999999999730144
Q gi|255764463|r 49 GEKTVESINSMPDVMRMSIDVAVE----KIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124 (337)
Q Consensus 49 g~~~k~~I~SMPGv~R~Sid~L~~----eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl 124 (337)
..+...+|.-+|.. |+++|..+- .+--...+|..--..=+.- +.......++....-+.+..+|+.+|+.- ++
T Consensus 26 ~~~~~~~iTl~p~~-rf~~DAaIiffsDIL~ip~AlG~~v~f~~g~G-P~~~~~~~~~~~~~l~~v~~~i~~~~~~~-~v 102 (306)
T cd00465 26 TSKAEWGITLVEPE-EIPLDVIPVHEDDVLKVAQALGEWAFRYYSQA-PSVPEIDEEEDPFREAPALEHITAVRSLE-EF 102 (306)
T ss_pred CCCCCCEEEECCCC-CCCCCEEEECCCCCEECHHHCCCCEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CC
T ss_conf 98654238731510-16888566538860218768199547950758-98998774056664478999999986357-86
Q ss_pred EEEE----CCCCCHHHCCCCCCCC--CCC----CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHH-----------
Q ss_conf 7986----1332710011431001--365----446289999999999999962897352466767799-----------
Q gi|255764463|r 125 GIIT----DVALDPFTIHGHDGIL--CDG----EIVNDETIELISHAAVIQADAGADIIAPSEMMDGRV----------- 183 (337)
Q Consensus 125 ~vi~----DVcLc~YT~hGHcGi~--~~g----~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV----------- 183 (337)
-+|- =--|..|---|+.-.- .+. .-.-|...+...+-...|++||||+|---|.-=|.+
T Consensus 103 pLIGFaGaPwTla~Ymieg~~sk~~~~~~pe~~~~LL~~lt~~~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~ 182 (306)
T cd00465 103 PTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKK 182 (306)
T ss_pred CEEEECCCHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 23764586599999998381089998879999999999999999999999998488999974343342311039999999
Q ss_pred ---HHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf ---999999987788577300336664354301016
Q gi|255764463|r 184 ---QEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR 216 (337)
Q Consensus 184 ---~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR 216 (337)
..+|+..+.....+++|.-+ .|-++..|-+|-
T Consensus 183 f~lp~~~~I~~~~~~~~vPiI~F-~~G~~~~~l~~~ 217 (306)
T cd00465 183 FALPAYKKVAEYKAAGEVPIVHH-SCYDAADLLEEM 217 (306)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEE-ECCCHHHHHHHH
T ss_conf 99999999999745799988998-328667789999
No 343
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=26.64 E-value=51 Score=14.57 Aligned_cols=60 Identities=17% Similarity=0.358 Sum_probs=34.8
Q ss_pred HCCCCEEEECCCHHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 40898799553114589999999624998-99993461899999999888978899999999999
Q gi|255764463|r 251 QESADMLLVKPGLPYLDVCFRIKEKFGLP-TFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 (337)
Q Consensus 251 ~EGAD~lMVKPa~~yLDii~~~k~~~~~P-~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~ 314 (337)
.|---++|+-|+..|-|....++++|+.- -.--.+-.|=-||--+.|. |+ +.++++....
T Consensus 10 ~~DtR~Imi~p~~ef~ef~~kIr~KFG~r~~lkik~kDdGdmITm~Dqd---Dl-dm~i~~ar~~ 70 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDDGDMITMGDQD---DL-DMAIDTARSE 70 (86)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCHH---HH-HHHHHHHHHH
T ss_conf 4767899955987779999999987384543378985489858861678---89-9999999999
No 344
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=26.51 E-value=51 Score=14.56 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 667677999999999877885773003
Q gi|255764463|r 176 SEMMDGRVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 176 SdMMDGrV~aIR~~Ld~~g~~~~~Ims 202 (337)
|+=+.--.+.+|+.||+.||.++.|+.
T Consensus 265 SGDLa~Ls~~vR~~LD~aG~~~~kI~a 291 (466)
T PRK09243 265 SGDLAYLSKKVRKMLDEAGFTDTKIVA 291 (466)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 523999999999999767888848999
No 345
>PRK06689 consensus
Probab=26.48 E-value=3.2 Score=22.67 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=67.1
Q ss_pred CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-C----HHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 86328899999----999999988893676330256334554454215765-3----79999999997301447986133
Q gi|255764463|r 61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPD-N----LINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~d-g----lv~rAIr~IK~~fpdl~vi~DVc 131 (337)
|+.|--.|... +...++++.|.=.=-+.|+.-++.| +...++.| + .....+..+|-.|.+-+.+|-=
T Consensus 168 gIsReeqD~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~---~~~~~~~De~~R~~tt~ekLa~L~P~F~~~GtvTAg- 243 (391)
T PRK06689 168 EITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERR---KEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTAG- 243 (391)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC---CCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC-
T ss_conf 9899999999999999999999749975438757743677---745641576645688866762479753467866155-
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHH
Q ss_conf 271001143100136544628999999999----9999962897352466767799999999987788--5773003366
Q gi|255764463|r 132 LDPFTIHGHDGILCDGEIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVA 205 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsa 205 (337)
=++-.++|-+.++ +-..+..+.+.-. =+.++.+|+| |..|--|-|.+||++|+.+|. .|+-+.----
T Consensus 244 Nss~~~DGAaa~l----l~s~~~a~~~gl~plari~~~~~~g~~---P~~m~~gPv~A~~k~L~ragl~~~Did~~EinE 316 (391)
T PRK06689 244 NASGLNDGSAVLV----LMSEEKAKEKGLQPLARIVGYSVAGVD---PKIMGIGPAPAIRKGLEKVDWSLEDADLLEINE 316 (391)
T ss_pred CCCCCCCHHHHHH----HHCHHHHHHCCCCCEEEEECEEEEECC---HHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEH
T ss_conf 4675443899999----857999997799814999781899889---899877499999999998599864588899615
Q ss_pred HHHHH
Q ss_conf 64354
Q gi|255764463|r 206 KFNSS 210 (337)
Q Consensus 206 KfaS~ 210 (337)
=||+.
T Consensus 317 AFA~q 321 (391)
T PRK06689 317 AFAAQ 321 (391)
T ss_pred HHHHH
T ss_conf 66889
No 346
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=26.46 E-value=4.4 Score=21.78 Aligned_cols=70 Identities=10% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHC-CCCCHHHC---CCCEEEECC---CCCEEEC---CCCC-CCCCCCHHH-------HHHHHHHHHHCCCCEE
Q ss_conf 889998634-77888773---311666758---9881104---8887-863288999-------9999999998889367
Q gi|255764463|r 24 NWIREMVRE-HRLSVSDL---ILPIFLTSG---EKTVESI---NSMP-DVMRMSIDV-------AVEKIKQVADLGIPAI 85 (337)
Q Consensus 24 ~~iR~Lv~E-t~Ls~~dL---I~PiFV~eg---~~~k~~I---~SMP-Gv~R~Sid~-------L~~eie~~~~lGI~av 85 (337)
..++.++.. +.|.+++. |+=-++..+ -|.-..+ .++| .+--+++|. .+...-..+..|-..+
T Consensus 33 ~~i~~~l~r~~~l~~~~Id~vi~G~v~~~~~~g~n~aR~aaL~aGlp~~vpa~tVnr~C~SGl~Ai~~Aa~~I~~G~~dv 112 (387)
T PRK08947 33 HLMRALLARNPALDPAEIEDIIWGCVQQTLEQGFNIARNAALLAGIPHTVPAVTVNRLCGSSMQALHDAARAIMTGDGDV 112 (387)
T ss_pred HHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 99999997458969899898999706655443335999999976999888616640142379999999998652799778
Q ss_pred EEEECCCC
Q ss_conf 63302563
Q gi|255764463|r 86 AIFPNIPM 93 (337)
Q Consensus 86 ~LFp~I~~ 93 (337)
.|=+++++
T Consensus 113 vlaGGvEs 120 (387)
T PRK08947 113 FLIGGVEH 120 (387)
T ss_pred EEEEEECC
T ss_conf 99841022
No 347
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=26.36 E-value=42 Score=15.17 Aligned_cols=15 Identities=7% Similarity=-0.080 Sum_probs=8.1
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999998889367633
Q gi|255764463|r 74 IKQVADLGIPAIAIF 88 (337)
Q Consensus 74 ie~~~~lGI~av~LF 88 (337)
.+.++..|+..|--+
T Consensus 61 ~k~l~~~g~~rvf~i 75 (280)
T cd00777 61 KQLLMVSGFDRYFQI 75 (280)
T ss_pred HHHHHHCCCCCCEEE
T ss_conf 999985687775798
No 348
>TIGR00303 TIGR00303 conserved hypothetical protein TIGR00303; InterPro: IPR002805 Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin . It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop , . Vitamin B_12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes . The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin . Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) . One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction . This entry represents a group of proteins predicted to have nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity..
Probab=26.31 E-value=11 Score=19.20 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=7.4
Q ss_pred EEECCCHHHHHHH
Q ss_conf 9955311458999
Q gi|255764463|r 257 LLVKPGLPYLDVC 269 (337)
Q Consensus 257 lMVKPa~~yLDii 269 (337)
+||||..||+||=
T Consensus 95 l~vkP~vPyI~ld 107 (350)
T TIGR00303 95 LSVKPKVPYINLD 107 (350)
T ss_pred CCCCCCCCEEECC
T ss_conf 8688968866078
No 349
>pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.
Probab=26.19 E-value=33 Score=15.84 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 6777744315721147889888876640898799553114589999999624998999934618999999
Q gi|255764463|r 225 LKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKA 294 (337)
Q Consensus 225 ~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~ 294 (337)
+.-||..|..|+-..---+-|+.+-|.|||.|+=-|----.=||+..+|..- +|.+|-..++.
T Consensus 111 ~HI~K~~F~vPFVCGarnLGEAlRRI~EGAaMIRTKGEaGTGnVvEAVrH~R-------~i~~eI~~l~~ 173 (209)
T pfam01680 111 FHIDKKKFTVPFVCGARNLGEALRRIWEGAAMIRTKGEAGTGNVVEAVRHMR-------LMNGEIRRLQN 173 (209)
T ss_pred CCCCCCCCCCCEEECCCCHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHH-------HHHHHHHHHHC
T ss_conf 0554101677643068873899998870142134678789875999999999-------99999999976
No 350
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=26.06 E-value=17 Score=17.80 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=30.0
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf 999962897352466767799999999987788--577300336664354
Q gi|255764463|r 163 VIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS 210 (337)
Q Consensus 163 l~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~ 210 (337)
+.++.+|+| |..|--|-|.|++++|+.+|. .|+-+.---==||+.
T Consensus 282 ~~~~~~g~~---P~~~~~gpv~A~~~~L~~agl~~~Did~~EinEAFA~~ 328 (401)
T PRK08131 282 LSSAAAGVE---PRIMGIGPVEAIKKALARAGLTLDDMDIIEINEAFASQ 328 (401)
T ss_pred EEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHH
T ss_conf 977788748---77848265999999999759981238777850266888
No 351
>PRK06462 asparagine synthetase A; Reviewed
Probab=26.00 E-value=43 Score=15.11 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=8.3
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999998889367633
Q gi|255764463|r 74 IKQVADLGIPAIAIF 88 (337)
Q Consensus 74 ie~~~~lGI~av~LF 88 (337)
.+.++-.|...|-=+
T Consensus 89 lk~li~~g~~rVfeI 103 (332)
T PRK06462 89 KQLMLRLLKGKVFYL 103 (332)
T ss_pred HHHHHHCCCCCEEEE
T ss_conf 999986389977997
No 352
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=25.99 E-value=42 Score=15.18 Aligned_cols=104 Identities=18% Similarity=0.066 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC--CCEEEEEC-CHHHH--HHHHHHHC
Q ss_conf 467777443157211478898888766408987995531145899999996249--98999934-61899--99999988
Q gi|255764463|r 224 LLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG--LPTFAYQV-SGEYA--MIKAASLQ 298 (337)
Q Consensus 224 ~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~--~P~~aYqV-SGEYa--mi~~a~~~ 298 (337)
.|.-+|+.|+.|+--....+-|+.+-+.|||-|+-.|-----=||+..+|.... .-+..+|- .-|-. .+...+..
T Consensus 105 ~~h~~k~~f~vPfvCGa~~lGea~rri~eGa~m~rtkGe~GtG~~~~av~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (298)
T TIGR00343 105 RFHIDKKKFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGDIVEAVRHMRLINEEIRELQKKLEEEEELGLAAEAKE 184 (298)
T ss_pred HHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44201012002214264467889998873136532268888655999999999999999999986445676678888766
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 8978899999999999772699998201899
Q gi|255764463|r 299 GWINKNDAMMESLLAFKRAGCDGIFTYFAME 329 (337)
Q Consensus 299 g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~ 329 (337)
. ..-.+..|.+..++..|-=-++.+.|--
T Consensus 185 ~--~~~~~~~~~~~~~~~~G~lPvvnfaaGG 213 (298)
T TIGR00343 185 N--EELEVPVELLKEVKKEGKLPVVNFAAGG 213 (298)
T ss_pred H--HHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 6--7778999999999863897446413576
No 353
>smart00642 Aamy Alpha-amylase domain.
Probab=25.87 E-value=53 Score=14.48 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=45.7
Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCH------------HHHHHHHHHH
Q ss_conf 87863288-------9999999999998889367633025633455445421576537------------9999999997
Q gi|255764463|r 59 MPDVMRMS-------IDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNL------------INEGICAIKK 119 (337)
Q Consensus 59 MPGv~R~S-------id~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dgl------------v~rAIr~IK~ 119 (337)
+|--|.++ +..+.+.++.+.++||++|-|=|..+. ......-+-|++..+ ..+-|.++++
T Consensus 3 ~~drF~~~~~~~gGd~~gi~~kldyl~~lGv~~i~l~P~~~~-~~~~~~~hgY~~~d~~~vd~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 3 YPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFES-PQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 773346489998408999998779999779998996876248-9988888881701012404046999999999999998
Q ss_pred HHCCCEEEECCCCCHHHC
Q ss_conf 301447986133271001
Q gi|255764463|r 120 NIPNIGIITDVALDPFTI 137 (337)
Q Consensus 120 ~fpdl~vi~DVcLc~YT~ 137 (337)
+ .|-||.|+-+-.-.+
T Consensus 82 ~--gi~vilD~V~NH~~~ 97 (166)
T smart00642 82 R--GIKVILDVVINHTSD 97 (166)
T ss_pred C--CCEEEEEECCCCCCC
T ss_conf 8--998999889986777
No 354
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.86 E-value=53 Score=14.48 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=61.7
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCHH
Q ss_conf 43010167531024467777443157211478898888766408987995531145899999996249-98999934618
Q gi|255764463|r 210 SFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG-LPTFAYQVSGE 288 (337)
Q Consensus 210 ~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~-~P~~aYqVSGE 288 (337)
+++|-.++|+..+....+..+--...+.|..|+ ..-.+.|||++|.-- +..+-++++-+... .+-+---+||-
T Consensus 169 a~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~----~eAl~agaDiImLDN--m~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 169 AAAGSITEAVRRARAAAPFTKKIEVEVESLEEA----EEALEAGADIIMLDN--MSPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred HHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHH----HHHHHCCCCEEEECC--CCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 875359999999997589986289974999999----999974999999769--99999999999744477669997589
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 9999999988897889999999999977269999820189999998
Q gi|255764463|r 289 YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 (337)
Q Consensus 289 Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~~L 334 (337)
++ +|++..+.--|-|+|.+-+--.-+.||
T Consensus 243 ------------It-----~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 243 ------------IT-----LENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred ------------CC-----HHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf ------------78-----778999862699799807330477533
No 355
>pfam12114 Period_C Period protein 2/3C-terminal region. This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.
Probab=25.85 E-value=33 Score=15.83 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=10.6
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 44315721147889888
Q gi|255764463|r 230 KTYYLDPANVQEAIREA 246 (337)
Q Consensus 230 ~sYQmd~~n~~eA~~e~ 246 (337)
=||||+.++..+-|+|=
T Consensus 104 MtYQip~R~~e~VLkeD 120 (190)
T pfam12114 104 MTYQIPSRDLEEVLKED 120 (190)
T ss_pred EEEECCCHHHHHHHHHH
T ss_conf 87206701489999999
No 356
>pfam01255 Prenyltransf Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.
Probab=25.84 E-value=52 Score=14.50 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 288999999999999888936763302563345544542157653799999999973014
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN 123 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd 123 (337)
+.+.+.+.+.++-|.++||+.+-+|..--++-|-+..+ -+.++.-..+.+++..++
T Consensus 21 ~~G~~~~~~i~~~c~~~gI~~lTvyaFStEN~~R~~~E----v~~L~~l~~~~l~~~~~~ 76 (222)
T pfam01255 21 RAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEE----VDFLMELLEEKLRRLLED 76 (222)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEHHHCHHHCCCCHHH----HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986999897264178754999899----999999999999999999
No 357
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=25.83 E-value=40 Score=15.30 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHHH-CCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-H----HCCCCEEECCC
Q ss_conf 576537999999999730-14479861332710011431001365446289999999999999-9----62897352466
Q gi|255764463|r 104 IDPDNLINEGICAIKKNI-PNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQ-A----DAGADIIAPSE 177 (337)
Q Consensus 104 ~n~dglv~rAIr~IK~~f-pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~-A----~AGaDivAPSd 177 (337)
|..=+-+..+++.+++.= -+.+|+| .||=| |+...|.++|-.- - +-|=-+|==+.
T Consensus 298 ygsP~~~~i~~~e~~~~P~~~~lii~---------TGsQG----------Ep~A~L~RiAn~~h~~~~i~~~DtVVfSa~ 358 (593)
T TIGR00649 298 YGSPKNLFISLKEINKYPKENYLIIT---------TGSQG----------EPLAALTRIANGEHEQIRIRKGDTVVFSAP 358 (593)
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEE---------ECCCC----------CHHHHHHHCCCCCCCCEEECCCCEEEEECC
T ss_conf 13805567999999718886379998---------55989----------412555010078876310048734898568
Q ss_pred CCCCHH-HHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 767799-9999999877885773003366643543010167531024467777443157211478898888766408987
Q gi|255764463|r 178 MMDGRV-QEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADM 256 (337)
Q Consensus 178 MMDGrV-~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~ 256 (337)
---|.. -+.|..+|..=. -+=+-.+|++|+++-=|--+ ++|-.|
T Consensus 359 ~IPG~~n~~~~~~~~~~L~---------~~ga~v~~~~~~~~HvSGHA--------------s~Ed~k------------ 403 (593)
T TIGR00649 359 PIPGNENIAVSNTLDVRLA---------RAGARVIKGELDDIHVSGHA--------------SQEDHK------------ 403 (593)
T ss_pred CCCCHHHHHHHHHHHHHHH---------HHHHHHHHHCCCCEEEECCC--------------CCHHHH------------
T ss_conf 9987377999999999999---------87778741111871671326--------------734699------------
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 99553114589999999624998999934618999999998
Q gi|255764463|r 257 LLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASL 297 (337)
Q Consensus 257 lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~ 297 (337)
++|+.+|=+|-+| |.|||.|+++-++
T Consensus 404 ----------~llrllkPkyiiP-----~hGeyrm~~~h~~ 429 (593)
T TIGR00649 404 ----------LLLRLLKPKYIIP-----VHGEYRMLAAHTK 429 (593)
T ss_pred ----------HHHHHHCCCEEEC-----CCCCHHHHHHHHH
T ss_conf ----------9998629855511-----7865678999999
No 358
>PRK13759 arylsulfatase; Provisional
Probab=25.66 E-value=36 Score=15.60 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCCCEE
Q ss_conf 66767799999999987788-577300
Q gi|255764463|r 176 SEMMDGRVQEIRKKLDSHGH-INVGIM 201 (337)
Q Consensus 176 SdMMDGrV~aIR~~Ld~~g~-~~~~Im 201 (337)
-.+||-.||.|.++|++.|. .||.|+
T Consensus 262 i~~vD~~iG~ll~~L~e~gl~dNTiII 288 (474)
T PRK13759 262 ITFIDHQIGRILQTLKEKGMYDNTIIC 288 (474)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999999999999974998770799
No 359
>PTZ00292 ribokinase; Provisional
Probab=25.57 E-value=53 Score=14.44 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCHHH-HHHHHHHHCCC
Q ss_conf 99999999628973524667677999-99999987788
Q gi|255764463|r 159 SHAAVIQADAGADIIAPSEMMDGRVQ-EIRKKLDSHGH 195 (337)
Q Consensus 159 ~k~Al~~A~AGaDivAPSdMMDGrV~-aIR~~Ld~~g~ 195 (337)
+.+|+..++-|+++--=+-.=|...+ .+++.|.++|-
T Consensus 55 ~NvA~~larLG~~~~~ig~VG~D~~G~~~~~~L~~~GV 92 (328)
T PTZ00292 55 ANQAVAAGRLGAKVAMVSMVGTDGDGSDYIKELERNGV 92 (328)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 99999999869985899996895789999999997299
No 360
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=51 Score=14.59 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=44.3
Q ss_pred CCCCCHHHCCCCCCCCC------C---CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CC
Q ss_conf 13327100114310013------6---5446289999999999999962897352466767799999999987788--57
Q gi|255764463|r 129 DVALDPFTIHGHDGILC------D---GEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--IN 197 (337)
Q Consensus 129 DVcLc~YT~hGHcGi~~------~---g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~ 197 (337)
--||.|.-+--| |+-+ . +-|.|+++-+...+-+. -|.+||+.||..|| ..
T Consensus 143 sKsL~pLPeK~h-gL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~------------------ii~~iR~fl~~~gFlEVE 203 (502)
T COG1190 143 SKSLRPLPEKFH-GLTDKEIRYRQRYLDLIVNPESRQTFIKRSK------------------IIRAIREFLDDRGFLEVE 203 (502)
T ss_pred CCCCCCCCHHHC-CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH------------------HHHHHHHHHHHCCCEEEC
T ss_conf 020777974543-7863888999888898659999999999999------------------999999999877975841
Q ss_pred CCEECHHHHHHHHHHCCH
Q ss_conf 730033666435430101
Q gi|255764463|r 198 VGIMPYVAKFNSSFYGPY 215 (337)
Q Consensus 198 ~~ImsYsaKfaS~fYgPF 215 (337)
||+|..-+-=|++ -||
T Consensus 204 TP~lq~i~GGA~A--rPF 219 (502)
T COG1190 204 TPMLQPIPGGAAA--RPF 219 (502)
T ss_pred CCCCCCCCCCCCC--CCC
T ss_conf 6000355787322--650
No 361
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=25.43 E-value=48 Score=14.77 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCC--CCCCEECHHHHHHHH
Q ss_conf 466767799999999987788--577300336664354
Q gi|255764463|r 175 PSEMMDGRVQEIRKKLDSHGH--INVGIMPYVAKFNSS 210 (337)
Q Consensus 175 PSdMMDGrV~aIR~~Ld~~g~--~~~~ImsYsaKfaS~ 210 (337)
|.+|-.|-+.+++++|+.+|. .|+-+.-.--=||+.
T Consensus 280 p~~m~~~p~~A~~~~L~ragl~~~did~~EinEAFA~~ 317 (388)
T PRK06366 280 PLDFVEAPIPATRKLLEKQNKSIDYYDLVEHNEAFSIA 317 (388)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHHH
T ss_conf 36624372999999999859985551378860888999
No 362
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=25.31 E-value=54 Score=14.41 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCC
Q ss_conf 99999999998889367633025633455445421576537999999999730144798613327100114310013654
Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGE 148 (337)
Q Consensus 69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~ 148 (337)
.-++.++...+.|..-+.+- =++ | |....+.-...|+.|.+.+. .| +--.|-
T Consensus 30 dP~~~A~~~~~~Ga~~lhvv-DLd-------~--A~~g~~~n~~~I~~i~~~~~----------~p--------i~vGGG 81 (241)
T PRK00748 30 DPLAQAQAWQDQGAEWLHLV-DLD-------G--AFAGRPVNLELIEAIVAAVD----------IP--------VQLGGG 81 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEE-ECC-------C--CCCCCCCHHHHHHHHHHHCC----------CC--------EEEECC
T ss_conf 99999999998799989999-785-------4--20288207999999998679----------99--------998277
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCC
Q ss_conf 46289999999999999962897352466767799999999987788577300336664354301016753102446777
Q gi|255764463|r 149 IVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGD 228 (337)
Q Consensus 149 IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gd 228 (337)
|-+-++++.+ -++|||-|.-+..-=--...+++....-| .. .++|--+| +-.-...|=
T Consensus 82 Irs~e~~~~~-------l~~GadkVvigS~a~~n~~~i~~~~~~~g-~~-ivvsiD~k-------------~~~v~~~gw 139 (241)
T PRK00748 82 IRDLETVEAY-------LDAGVARVIIGTAAVKNPELVKEACKKFP-GR-IVVGLDAR-------------DGKVATRGW 139 (241)
T ss_pred CCCHHHHHHH-------HHCCCCEEEECCHHHHCHHHHHHHHHHCC-CC-EEEEEEEC-------------CCEEECCCC
T ss_conf 0749999999-------97697758864710339689999986235-55-79999821-------------665401575
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 74431572114788988887664089879955-------31145899999996249989999346189999999988897
Q gi|255764463|r 229 KKTYYLDPANVQEAIREASIDIQESADMLLVK-------PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWI 301 (337)
Q Consensus 229 r~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVK-------Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~ 301 (337)
++.=.++ ..|.+. .-.+-|+--+++- =..|-++++..+.+.+++|+.| || |.-
T Consensus 140 ~~~t~~~---~~~~i~---~~~~~G~~eii~tdI~~DGt~~G~d~~l~~~i~~~~~ipvia---sG-----------Gv~ 199 (241)
T PRK00748 140 QEVSGVD---LEDLAK---RFEDAGVAAIIYTDISRDGTLSGPNVELTRELAAATPIPVIA---SG-----------GVS 199 (241)
T ss_pred CCCCCCC---HHHHHH---HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE---EC-----------CCC
T ss_conf 5467974---899999---998558756999887056854768999999999868998999---88-----------999
Q ss_pred CHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8899999999999772699998
Q gi|255764463|r 302 NKNDAMMESLLAFKRAGCDGIF 323 (337)
Q Consensus 302 d~~~~~~E~l~~~kRAGAd~Ii 323 (337)
+.++ ++.|..+..+|.+.+|
T Consensus 200 s~~D--i~~L~~~~~~gv~gvi 219 (241)
T PRK00748 200 SLDD--IRALKALGPEGVEGVI 219 (241)
T ss_pred CHHH--HHHHHHCCCCCCCEEE
T ss_conf 9999--9999860317924899
No 363
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=25.30 E-value=54 Score=14.41 Aligned_cols=133 Identities=22% Similarity=0.195 Sum_probs=72.9
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECCCCC
Q ss_conf 048887863288999999999999888936763302563345544542157653799999999973014-4798613327
Q gi|255764463|r 55 SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPN-IGIITDVALD 133 (337)
Q Consensus 55 ~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpd-l~vi~DVcLc 133 (337)
+|+-+...- .+...+...+..+..+||++|+..-+=++...+.... .-..+.--..-|+.||..+++ ..| -|+.-
T Consensus 61 ~i~Hltcr~-~n~~~l~~~L~~~~~~Gi~niLaLrGD~p~~~~~~~~-~~~~~~~a~~Li~~i~~~~~~~~~i--gva~y 136 (274)
T cd00537 61 PIPHLTCRD-RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGA-KPVGFVYAVDLVELIRKENGGGFSI--GVAAY 136 (274)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCEE--CCCCC
T ss_conf 226860178-9999999999999985986388735888877888888-8877467999999999975898500--56668
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHCCCC---CCCEECH
Q ss_conf 10011431001365446289999999999999962897352466767-7999999999877885---7730033
Q gi|255764463|r 134 PFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD-GRVQEIRKKLDSHGHI---NVGIMPY 203 (337)
Q Consensus 134 ~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMD-GrV~aIR~~Ld~~g~~---~~~ImsY 203 (337)
| -||-.. -+-+..++.|.+ -.+||||.+---=-.| ..+..-++.+.+.|.. -.+||.-
T Consensus 137 P---e~hp~~-----~~~~~di~~L~~----K~~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GImpi 198 (274)
T cd00537 137 P---EGHPEA-----PSLEEDIKRLKR----KVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPL 198 (274)
T ss_pred C---CCCCCC-----CHHHHHHHHHHH----HHHHHHHHHHHHHEECHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 7---768774-----168899999999----9981426678644333999999999999749998656321100
No 364
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.02 E-value=55 Score=14.38 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCCCCCEECHHH
Q ss_conf 99999999877885773003366
Q gi|255764463|r 183 VQEIRKKLDSHGHINVGIMPYVA 205 (337)
Q Consensus 183 V~aIR~~Ld~~g~~~~~ImsYsa 205 (337)
-..+.+.|.++||....|-.|+-
T Consensus 218 ~~~~~~~L~~~Gy~~yeisnfak 240 (377)
T PRK08599 218 YEYLMSEMEKHGFHQYEISNFAK 240 (377)
T ss_pred HHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 99999999975997412033137
No 365
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=24.82 E-value=55 Score=14.35 Aligned_cols=172 Identities=20% Similarity=0.280 Sum_probs=98.9
Q ss_pred HCCCCEEEECCCCCEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7331166675898811-048887863288999999999999888936763302563345544542157653799999999
Q gi|255764463|r 39 DLILPIFLTSGEKTVE-SINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAI 117 (337)
Q Consensus 39 dLI~PiFV~eg~~~k~-~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~I 117 (337)
-+|.|+ .- ++.. ||++|= .+-+.|++..+.|+.+|++-++|-+.---+.|
T Consensus 18 ~vivPm--DH--Git~Gpi~GLv--------di~~tv~~V~~gGadAVL~hkGi~~~~h~~~g----------------- 68 (259)
T TIGR01949 18 TVIVPM--DH--GITLGPIDGLV--------DIRKTVNEVAEGGADAVLLHKGIARRGHREKG----------------- 68 (259)
T ss_pred EEEEEC--CC--CCCCCCCCCHH--------HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC-----------------
T ss_conf 799866--78--84567211111--------48789999760776678527871004565668-----------------
Q ss_pred HHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC-----CCCCCCHHHHHHHHHHH
Q ss_conf 9730144798613327100114310013654462899999999999999628973524-----66767799999999987
Q gi|255764463|r 118 KKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP-----SEMMDGRVQEIRKKLDS 192 (337)
Q Consensus 118 K~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP-----SdMMDGrV~aIR~~Ld~ 192 (337)
.|..+|. =|-.=|+=+ ---||+++-.-++-|+ ++|||-|.= ||-=--++...=..=..
T Consensus 69 ----~D~GlIv--HLsAST~L~--------P~p~~K~~~~tVE~Ai---~~GADAVS~HvNvGs~~e~d~~~~lg~vA~~ 131 (259)
T TIGR01949 69 ----KDAGLIV--HLSASTSLS--------PDPNDKRIVTTVEDAI---RLGADAVSIHVNVGSDTEADQIEDLGDVAEI 131 (259)
T ss_pred ----CCEEEEE--ECCCCCCCC--------CCCCCCEEEECHHHHH---HCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ----3169998--604543258--------8887875785148997---3289867998864898738999999899998
Q ss_pred CCCCCCCEE--CHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHH-HHHHH
Q ss_conf 788577300--336664354301016753102446777744315721147889888876640898799553114-58999
Q gi|255764463|r 193 HGHINVGIM--PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLP-YLDVC 269 (337)
Q Consensus 193 ~g~~~~~Im--sYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~-yLDii 269 (337)
+..-.+|+| .| | -|.+=.-|.||.+-..|.|=. .+=|||+|=| +.. .+|=-
T Consensus 132 ad~~GvPlLAMmY-------------------a--RG~~i~~e~d~~~v~HAaRlg---~ElGADvvK~--~Y~Gd~~SF 185 (259)
T TIGR01949 132 ADDWGVPLLAMMY-------------------A--RGPRIDDEVDPEVVAHAARLG---EELGADVVKV--PYTGDIDSF 185 (259)
T ss_pred HHHCCCCHHECCC-------------------C--CCCCCCCCCCHHHHHHHHHHH---HHHCCCEEEE--CCCCCHHHH
T ss_conf 8654884201127-------------------8--868876644767888887653---5345776651--431774679
Q ss_pred HHHHHHCCCCEEE
Q ss_conf 9999624998999
Q gi|255764463|r 270 FRIKEKFGLPTFA 282 (337)
Q Consensus 270 ~~~k~~~~~P~~a 282 (337)
+++=+.+..||..
T Consensus 186 ~~VV~~c~~PVvv 198 (259)
T TIGR01949 186 EEVVKACAVPVVV 198 (259)
T ss_pred HHHHCCCCCCEEE
T ss_conf 9996217877787
No 366
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=24.69 E-value=55 Score=14.34 Aligned_cols=74 Identities=27% Similarity=0.303 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE-------C---CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHH
Q ss_conf 7211478898888766408987995-------5---31145899999996249989999346189999999988897889
Q gi|255764463|r 235 DPANVQEAIREASIDIQESADMLLV-------K---PGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKN 304 (337)
Q Consensus 235 d~~n~~eA~~e~~~D~~EGAD~lMV-------K---Pa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~ 304 (337)
-.++.....-=+..+.+||||=|-= - -=-+-+|||.++.++..+|+. |-| |.=+..
T Consensus 37 GlrdaGDPVeLA~~Y~~eGADELVFLDITAS~ecPl~R~~m~~Vv~r~Ae~VfiPlT---VGG-----------GI~~~e 102 (312)
T TIGR00735 37 GLRDAGDPVELAQRYDEEGADELVFLDITASSECPLGRETMIDVVERTAEKVFIPLT---VGG-----------GIKSIE 102 (312)
T ss_pred CHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE---ECC-----------CCCCHH
T ss_conf 201217823789998762895898514113666788880116788887521452222---168-----------888432
Q ss_pred HH------HHHHHHHHHHHCCCEE
Q ss_conf 99------9999999977269999
Q gi|255764463|r 305 DA------MMESLLAFKRAGCDGI 322 (337)
Q Consensus 305 ~~------~~E~l~~~kRAGAd~I 322 (337)
++ .+|.--.+.|||||=|
T Consensus 103 D~~GtkiPalevas~~L~aGADKv 126 (312)
T TIGR00735 103 DVKGTKIPALEVASKLLRAGADKV 126 (312)
T ss_pred HCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 045644427899999985489846
No 367
>PRK05269 transaldolase B; Provisional
Probab=24.69 E-value=55 Score=14.34 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC-CCC-CHHHCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4542157653799999999973014479861-332-71001143--1001365446289999999999999962897352
Q gi|255764463|r 99 TGSHIIDPDNLINEGICAIKKNIPNIGIITD-VAL-DPFTIHGH--DGILCDGEIVNDETIELISHAAVIQADAGADIIA 174 (337)
Q Consensus 99 ~GseA~n~dglv~rAIr~IK~~fpdl~vi~D-VcL-c~YT~hGH--cGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA 174 (337)
.+.-+||-++.+.+|-+.++- |.+.+|=.| ||. -|-|-.|- |-.+...-|.--.|+--=..||+.-|+|||-.|.
T Consensus 98 darls~d~~~~i~~a~~li~l-y~~~gi~~~rilIKip~TweGi~Aa~~Le~~gI~~nlTlvFs~~QA~a~a~Ag~~~IS 176 (320)
T PRK05269 98 DARLSFDTEATIAKARKLIKL-YEEAGIDKDRILIKIASTWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLIS 176 (320)
T ss_pred CCHHCCCHHHHHHHHHHHHHH-HHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEC
T ss_conf 520226878999999999999-9974998232577448878899999999975962457776269999999975986987
Q ss_pred CCCCCCCHHHHHHHHHHHC-------CCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC--CCHHHHHHHH
Q ss_conf 4667677999999999877-------885773003366643543010167531024467777443157--2114788988
Q gi|255764463|r 175 PSEMMDGRVQEIRKKLDSH-------GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLD--PANVQEAIRE 245 (337)
Q Consensus 175 PSdMMDGrV~aIR~~Ld~~-------g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd--~~n~~eA~~e 245 (337)
|= ||-|..--.++ +-.|-++.| .-.-|-=|+. + | -+|-=|. ++|..|-+.=
T Consensus 177 Pf------VGRi~DWyk~~~~~~~~~~~~DPGV~s-----V~~Iy~yyk~-------~-g-y~T~VMgASfRn~~eI~aL 236 (320)
T PRK05269 177 PF------VGRILDWYKKNTGGKDYAPAEDPGVVS-----VTKIYNYYKK-------H-G-YKTVVMGASFRNIGQILAL 236 (320)
T ss_pred CC------CCHHHHHHHHCCCCCCCCCCCCCHHHH-----HHHHHHHHHH-------C-C-CCCEEEEEECCCHHHHHHH
T ss_conf 64------125778998556777787667954999-----9999999997-------5-9-9854864002789999997
Q ss_pred HHHHHHCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 887664089879955311458999999962
Q gi|255764463|r 246 ASIDIQESADMLLVKPGLPYLDVCFRIKEK 275 (337)
Q Consensus 246 ~~~D~~EGAD~lMVKPa~~yLDii~~~k~~ 275 (337)
-|.|.|-+-|. .|+ ++++.
T Consensus 237 ------AGcD~lTIsP~--LL~---eL~~~ 255 (320)
T PRK05269 237 ------AGCDRLTISPA--LLE---ELAAS 255 (320)
T ss_pred ------HCCCEEEECHH--HHH---HHHHC
T ss_conf ------47982311899--999---98707
No 368
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=24.51 E-value=56 Score=14.31 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCCCCCEEC
Q ss_conf 999999999877885773003
Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMP 202 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~~~Ims 202 (337)
-...+|+.||.+||.++.|+.
T Consensus 264 Ls~~~R~~LD~~G~~~~kI~~ 284 (443)
T PRK12484 264 LSKATRAILDTAGLEQVKIVA 284 (443)
T ss_pred HHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999999867998867999
No 369
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=24.42 E-value=56 Score=14.30 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCC---CCCCHHH--------HHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 379999999997301-447986133271001143100136---5446289--------9999999999999628973524
Q gi|255764463|r 108 NLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDGILCD---GEIVNDE--------TIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 108 glv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~---g~IdND~--------Tl~~L~k~Al~~A~AGaDivAP 175 (337)
..+..||+.+|++.+ +.-+|. .|-.|+|.-.+.-=.++ .-+.|.+ ..+.+.+-+..|.+||||+|.-
T Consensus 121 ~~v~eai~~lk~~l~~~vplig-f~ggP~Tla~yl~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~qi~aGad~i~i 199 (339)
T PRK06252 121 PVVLEAIKILKEKVGEDVPIIA-GMTGPASLASSLAGVKNFLKWLIKKPELAHEFIDFVTEACIEYAKAMLEAGADVIAI 199 (339)
T ss_pred HHHHHHHHHHHHHCCCCCCEEE-ECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999998189861796-467779999998746999999987999999999999999999999999829987897
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66767799999999987788577300336664354301016753102446777744315721147889888876640898
Q gi|255764463|r 176 SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESAD 255 (337)
Q Consensus 176 SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD 255 (337)
.|.-=|.- .|..+-|. --++.|..+.. +++++.+- +. -.+|. ..+.+.. .+-|+|
T Consensus 200 fDs~a~~~-----lls~~~f~-ef~~p~~~~i~--------~~i~~~~i-------lh-~~g~~-~~~~~~~--~~~g~d 254 (339)
T PRK06252 200 ADPSASPE-----LIGPEMFE-EFVLPYLNKIC--------KEVNGPTI-------LH-ICGDL-TSILEEL--ADCGFD 254 (339)
T ss_pred ECCCCCCC-----CCCHHHHH-HHHHHHHHHHH--------HHCCCCEE-------EE-ECCCC-HHHHHHH--HHCCCC
T ss_conf 15755556-----76999999-99899999999--------97799818-------88-65861-3789999--964999
Q ss_pred EEEECCCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 79955311458999999962499-8999934618999999998889788999999999997726999982
Q gi|255764463|r 256 MLLVKPGLPYLDVCFRIKEKFGL-PTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 256 ~lMVKPa~~yLDii~~~k~~~~~-P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~Iit 324 (337)
.+=+-.... +..+|+.++- -+..=+++-..-|+ .| +.+.+.-|+..+++ .|.+ |+.
T Consensus 255 ~~s~D~~~~----l~~a~~~~g~~~~lqGNldP~~ll~-----~g--~~e~i~~~~~~~l~-~g~~-I~n 311 (339)
T PRK06252 255 GISIDEKVS----VKQAKENVGNRARLIGNVSTSFTLL-----NG--TPEDVKAEAKACLE-DGVD-ILA 311 (339)
T ss_pred EEEECCCCC----HHHHHHHHCCCEEEEECCCCHHHHC-----CC--CHHHHHHHHHHHHH-CCCC-EEE
T ss_conf 997169999----9999998189917993689778766-----89--99999999999997-1899-168
No 370
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.22 E-value=57 Score=14.28 Aligned_cols=203 Identities=16% Similarity=0.218 Sum_probs=100.9
Q ss_pred CCEEEECCCCCEEECCCCCCCC-------CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1166675898811048887863-------288999999999999888936763302563345544542157653799999
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVM-------RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGI 114 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~-------R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAI 114 (337)
+=+-++|...=+-+|++.|... .||.+.+.+-++.+.+.||.-|-=| -+|-+.
T Consensus 35 lH~HltDdq~wrlei~~~P~Lt~~gs~g~~YT~~d~~eiv~yA~~rgI~ViPEi-D~PgHs------------------- 94 (311)
T cd06570 35 FHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI-DVPGHA------------------- 94 (311)
T ss_pred EEEEEECCCCCEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCEEEEEE-CCCCHH-------------------
T ss_conf 888586488874123888660105789960389999999999998599896533-374147-------------------
Q ss_pred HHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH--------CCCCEEECCCCCCCHHHH
Q ss_conf 999973014479861332710011431001365-44628999999999999996--------289735246676779999
Q gi|255764463|r 115 CAIKKNIPNIGIITDVALDPFTIHGHDGILCDG-EIVNDETIELISHAAVIQAD--------AGADIIAPSEMMDGRVQE 185 (337)
Q Consensus 115 r~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g-~IdND~Tl~~L~k~Al~~A~--------AGaDivAPSdMMDGrV~a 185 (337)
++.-+.+|++.. . .+++....++|+..+. .+.|++|.+.|.+.=--.++ -|.|=|....-- .-..
T Consensus 95 ~a~~~~yPel~~--~--~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lFp~~y~HiGGDEv~~~~W~--~~p~ 168 (311)
T cd06570 95 SAIAVAYPELAS--G--PGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEVDPKQWN--ENPR 168 (311)
T ss_pred HHHHHHCHHHCC--C--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCHH
T ss_conf 999986988547--8--887665667786672236898899999999999999857864156457546754243--7988
Q ss_pred HHHHHHHCCCCCC-CEECHHHHHHHHHHCC-------HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999987788577-3003366643543010-------1675310244677774431572114788988887664089879
Q gi|255764463|r 186 IRKKLDSHGHINV-GIMPYVAKFNSSFYGP-------YRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADML 257 (337)
Q Consensus 186 IR~~Ld~~g~~~~-~ImsYsaKfaS~fYgP-------FRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~l 257 (337)
|.+.+.++|+++. .+.+|-.+....+-.. +-|.... .. ++. ..+..=...+.+. .=.+.|-+.|
T Consensus 169 ~~~~m~~~~~~~~~~l~~~F~~~~~~~~~~~gk~~i~W~e~~~~--~~--~~~-~iv~~W~~~~~~~---~~~~~G~~vI 240 (311)
T cd06570 169 IQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP--DL--PKN-VVIQSWRGHDSLG---EAAKAGYQGI 240 (311)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECHHHCCC--CC--CCC-EEEEECCCCHHHH---HHHHCCCCEE
T ss_conf 99999983999899999999999999999809835842311157--99--997-1999559944899---9998799799
Q ss_pred EECCCHHHHHHHHHHHHHC-CCCE
Q ss_conf 9553114589999999624-9989
Q gi|255764463|r 258 LVKPGLPYLDVCFRIKEKF-GLPT 280 (337)
Q Consensus 258 MVKPa~~yLDii~~~k~~~-~~P~ 280 (337)
|= ++ .|||.-....... .-|+
T Consensus 241 ~s-~~-~YlD~~~~~~~~y~~dP~ 262 (311)
T cd06570 241 LS-TG-YYIDQPQPAAYHYRVDPM 262 (311)
T ss_pred EE-CC-EEECCCCCHHHCCCCCCE
T ss_conf 86-88-776688862011568984
No 371
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=24.12 E-value=54 Score=14.39 Aligned_cols=222 Identities=15% Similarity=0.169 Sum_probs=125.3
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 10488878632889999999999998889367633025633455445---421576537999999999730144798613
Q gi|255764463|r 54 ESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTG---SHIIDPDNLINEGICAIKKNIPNIGIITDV 130 (337)
Q Consensus 54 ~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~G---seA~n~dglv~rAIr~IK~~fpdl~vi~DV 130 (337)
.+|-.+.=+.=++-|+|...|+.+.+.-=--|...|. .-+-+..| ..-..|+ -++..++..=..+. +-|+
T Consensus 227 ~~~~~iGLNCAlGpdel~~h~~~Ls~~~~~~Vs~~PN--AGLPn~~G~~AeY~l~P~-~~A~~l~~fa~eg~-lniV--- 299 (1265)
T TIGR02082 227 AEILIIGLNCALGPDELRPHVKELSEHAEAYVSVHPN--AGLPNAFGKQAEYDLTPD-ELAKALKDFAEEGG-LNIV--- 299 (1265)
T ss_pred CCCCEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECC--CCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCC-EEEE---
T ss_conf 8730241231147778999999987008813888337--888100477768755578-99999999998639-0377---
Q ss_pred CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHH
Q ss_conf 32710011431001365446289999999999999962897352466767799999999987788577300336664354
Q gi|255764463|r 131 ALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSS 210 (337)
Q Consensus 131 cLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~ 210 (337)
=|=||--- - .|++|=++-..-.=...+--+.-.+-.+|
T Consensus 300 -------GGCCGTTP------------------------------~-----HIraiA~aVk~i~Pr~~~~ta~~~~~~~S 337 (1265)
T TIGR02082 300 -------GGCCGTTP------------------------------D-----HIRAIAEAVKDIKPRKRPETALYEPSRLS 337 (1265)
T ss_pred -------ECCCCCCH------------------------------H-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf -------42689967------------------------------8-----99999999816876888765563246763
Q ss_pred HHCCHHHHHHCC-------CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHH-------HHHHHHHH
Q ss_conf 301016753102-------44677774-4315721147889888876640898799553114589-------99999962
Q gi|255764463|r 211 FYGPYRDAISTR-------DLLKGDKK-TYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLD-------VCFRIKEK 275 (337)
Q Consensus 211 fYgPFRdA~~S~-------p~~~gdr~-sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLD-------ii~~~k~~ 275 (337)
.|-||+=+-+|. -+..|.|| .=-|.=.|..+||.=+..-+.+||-||=|===---|| ..+.+...
T Consensus 338 gle~~~~~~~~~FvniGERtNv~GS~KF~~li~aedY~~~L~iAk~QV~~GAQilDiN~D~~~lDg~~~M~~f~~llA~e 417 (1265)
T TIGR02082 338 GLEAITIAQESNFVNIGERTNVAGSKKFRKLIIAEDYDEALDIAKQQVENGAQILDINVDDGMLDGVAAMKRFLNLLASE 417 (1265)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 03134636635668874300787686799985123846887898887116977989870655367378999999962689
Q ss_pred --C-CCCEEEEECCHHHHHHHHHHH----CCCC------CH---HHHHHHHHHHHHHHCCCEEEECH
Q ss_conf --4-998999934618999999998----8897------88---99999999999772699998201
Q gi|255764463|r 276 --F-GLPTFAYQVSGEYAMIKAASL----QGWI------NK---NDAMMESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 276 --~-~~P~~aYqVSGEYami~~a~~----~g~~------d~---~~~~~E~l~~~kRAGAd~IitY~ 326 (337)
. .+|+.- =|-||+-|++.=+ ++.+ |- ++-.+|.+.-+||=||-++|-=|
T Consensus 418 Pdia~vPlMl--DSs~~~vleaGLk~~qGKcivNSislkdGDGPE~~F~~~a~l~k~yGAavVvmaf 482 (1265)
T TIGR02082 418 PDIAKVPLML--DSSEWEVLEAGLKCIQGKCIVNSISLKDGDGPEERFLEKAKLIKEYGAAVVVMAF 482 (1265)
T ss_pred CCCCCCCCCC--CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8602136000--5743799976243038846873202566888489999999999844984898701
No 372
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.02 E-value=57 Score=14.25 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHCCCCCCCEECHH
Q ss_conf 999999987788577300336
Q gi|255764463|r 184 QEIRKKLDSHGHINVGIMPYV 204 (337)
Q Consensus 184 ~aIR~~Ld~~g~~~~~ImsYs 204 (337)
..+.+.|.++||....|=.|+
T Consensus 235 ~~~~~~L~~~GY~~yeisnFA 255 (393)
T PRK08898 235 DWIHARLAAAGYAHYETSAYA 255 (393)
T ss_pred HHHHHHHHHCCCCEEEECHHH
T ss_conf 999999997699828725423
No 373
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=23.87 E-value=4.1 Score=22.00 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=61.8
Q ss_pred CCCCCCHHHHH----HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 86328899999----9999999888936763302563345544542157653-----79999999997301447986133
Q gi|255764463|r 61 DVMRMSIDVAV----EKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDN-----LINEGICAIKKNIPNIGIITDVA 131 (337)
Q Consensus 61 Gv~R~Sid~L~----~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dg-----lv~rAIr~IK~~fpdl~vi~DVc 131 (337)
|+.|--.|... +...++++.|.-.=-+.|+.-+.+|.. ...++.|. .....+.++|-.|..-+.+|
T Consensus 175 ~IsReeqD~~A~~Sh~rA~~A~~~G~f~~EIvPV~v~~~kg~--~~~~~~De~~R~~tt~e~La~L~p~f~~~GtvT--- 249 (401)
T PRK09050 175 NISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQRKGD--PVVVDRDEHPRPETTLEALAKLKPVVRPDGTVT--- 249 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCCC--CEEECCCCCCCCCCCHHHHHCCCCCCCCCCCEE---
T ss_conf 999999999999999999998764983332022560367788--568755215575788878855898504798447---
Q ss_pred CCHHHCCCCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC--CCCCEE
Q ss_conf 2710011431001365----44628999999999----9999962897352466767799999999987788--577300
Q gi|255764463|r 132 LDPFTIHGHDGILCDG----EIVNDETIELISHA----AVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGH--INVGIM 201 (337)
Q Consensus 132 Lc~YT~hGHcGi~~~g----~IdND~Tl~~L~k~----Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~--~~~~Im 201 (337)
.|.+--+.|| -+-+.+..+.|.-. =+.++.+|+| |..|--|-|.||+++|+.+|. .|+-+.
T Consensus 250 ------AgNsS~~~DGAaa~ll~s~~~a~~~gl~p~a~i~~~~~~g~~---P~~~~~gp~~A~~~~L~~agl~~~DiD~~ 320 (401)
T PRK09050 250 ------AGNASGVNDGAAALLLASEAAVKKHGLTPRARVLGMATAGVE---PRIMGIGPAPATRKLLARLGLTIDQFDVI 320 (401)
T ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC---HHHHCCCHHHHHHHHHHHCCCCHHHCCEE
T ss_conf ------542574341778898853999997699704999987898848---77837489999999999859985448789
Q ss_pred CHHHHHHHH
Q ss_conf 336664354
Q gi|255764463|r 202 PYVAKFNSS 210 (337)
Q Consensus 202 sYsaKfaS~ 210 (337)
-.--=||+.
T Consensus 321 EinEAFA~q 329 (401)
T PRK09050 321 ELNEAFAAQ 329 (401)
T ss_pred EECHHHHHH
T ss_conf 970243777
No 374
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=58 Score=14.21 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=59.3
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337)
.++||+--.+-...-++|----=++.+.+..++.++.+.|=.-+-|.. ..++|+.+.+++ ..-+++..||+..
T Consensus 3 ~~viItcAvtGa~~T~~~~PalP~TP~qIA~~a~~aa~AGAai~HlHv------Rp~dG~pt~d~~-~yr~~l~rIr~~~ 75 (298)
T COG3246 3 RKVIITCAVTGARHTPADHPALPVTPDQIASDAIAAAKAGAAILHLHV------RPEDGRPTLDPE-AYREVLERIRAAV 75 (298)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE------CCCCCCCCCCHH-HHHHHHHHHHCCC
T ss_conf 752899831688678566999999999999999999964841689874------589998666999-9999999997148
Q ss_pred CCCEEEE
Q ss_conf 1447986
Q gi|255764463|r 122 PNIGIIT 128 (337)
Q Consensus 122 pdl~vi~ 128 (337)
+|++|..
T Consensus 76 ~D~vin~ 82 (298)
T COG3246 76 GDAVINL 82 (298)
T ss_pred CCEEEEE
T ss_conf 9869995
No 375
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=23.69 E-value=58 Score=14.21 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 328899999999999988893676330256334554454215765379999999997301447986
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIIT 128 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~ 128 (337)
||=+.+.+-+..+++.+.|.++..+= . +..|.+ =+.+.+.++.++|+ |=|..
T Consensus 29 y~~~e~~~~~~~~e~~~~G~~a~~~~--~--dvs~~~---------~~~~~~~~~~~~~G-iDiLV 80 (238)
T TIGR01830 29 YRTSEEGAEEVVEEIKELGVKAAGVV--L--DVSDRE---------DVKALVEEAEEELG-IDILV 80 (238)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEE--E--CCCCHH---------HHHHHHHHHHHHHC-CEEEE
T ss_conf 59825788899999985697599996--0--388889---------99999999999829-90899
No 376
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.68 E-value=58 Score=14.21 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf 1458999999962499899993461899999999888978-----899999999999772699998201
Q gi|255764463|r 263 LPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWIN-----KNDAMMESLLAFKRAGCDGIFTYF 326 (337)
Q Consensus 263 ~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d-----~~~~~~E~l~~~kRAGAd~IitY~ 326 (337)
---||-|..+---..-|+..= ++ ..||.- .++.+.|.+-.+|++||.-|+.|-
T Consensus 38 ~~~L~~i~~ilPg~~~PTVs~-L~----------~~~w~AV~~vv~~~~~~~~i~~Lk~~GA~~Ilv~p 95 (100)
T TIGR03455 38 RDNLDEVRALLPGLEGPTVSP-LA----------DEGWVAVHAVVDEKVVNELIDKLKAAGARDILVLP 95 (100)
T ss_pred HHHHHHHHHHCCCCCCCCCCC-CC----------CCCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899999998687889991015-67----------89848999997579999999999987997799913
No 377
>PRK10499 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; Provisional
Probab=23.62 E-value=58 Score=14.20 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=46.3
Q ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 6640898799553114589999999624-99899993461899999999888978899999999999772699
Q gi|255764463|r 249 DIQESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 249 D~~EGAD~lMVKPa~~yLDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd 320 (337)
+..+++|++++-|-.-|+ ..++++.+ +.||.+-.- ..-|..|-+.++-.++.-++-|+|+
T Consensus 46 ~~~~~~DviLLGPQVry~--~~~ik~~~~~~PV~vId~----------~~YG~mdG~~vL~~Al~li~ka~~~ 106 (106)
T PRK10499 46 EKGQNADVVLLGPQIAYM--LPEIQRLLPNKPVEVIDS----------LLYGKVDGLGVLKAAVAAIKKAAAN 106 (106)
T ss_pred HHCCCCCEEEECHHHHHH--HHHHHHHCCCCCEEEECH----------HHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 644599999998478887--999998828998899888----------9830664899999999999872369
No 378
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.51 E-value=58 Score=14.19 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCC
Q ss_conf 8988110488878632889999999999998889367633025633455445421576537999999999730----144
Q gi|255764463|r 49 GEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI----PNI 124 (337)
Q Consensus 49 g~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f----pdl 124 (337)
|-+.+..|.||-...-.-++.-++++.++.+.|.--|=+= +| +.++. ++++.||+.. -++
T Consensus 26 Gg~~Pi~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvt--vp-~~~~A-------------~al~~I~~~l~~~~~~i 89 (606)
T PRK00694 26 GSEHSIKIQSMTTTATTDVDGTVRQICALQEHGCDIVRVT--VQ-GIKEA-------------QACEHIKERLIQQGISI 89 (606)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CC-CHHHH-------------HHHHHHHHHHHHCCCCC
T ss_conf 7999675564689986368999999999998599989987--79-99999-------------86999999986369999
Q ss_pred EEEECCCCCH
Q ss_conf 7986133271
Q gi|255764463|r 125 GIITDVALDP 134 (337)
Q Consensus 125 ~vi~DVcLc~ 134 (337)
=+++|+-+.+
T Consensus 90 PlvADIHF~~ 99 (606)
T PRK00694 90 PLVADIHFFP 99 (606)
T ss_pred CEEEECCCCH
T ss_conf 9886668888
No 379
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=23.34 E-value=59 Score=14.17 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=44.8
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCHH
Q ss_conf 301016753102446777744315721147889888876640898799553114589999999624--998999934618
Q gi|255764463|r 211 FYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKF--GLPTFAYQVSGE 288 (337)
Q Consensus 211 fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~--~~P~~aYqVSGE 288 (337)
|+|-+++++..........+--+..+.|..|+... ++.|+|++|.----| +-++++.... .-|-..--+||
T Consensus 62 ~~g~~~~~i~~~~~~~~~~~~I~VEv~tl~e~~~a----~~~~~d~I~LDn~sp--e~l~~~v~~l~~~~~~v~iEaSG- 134 (169)
T pfam01729 62 AAGSITEAVRRAREVAPFAVKIEVEVENLEELEEA----LEAGADIIMLDNFSP--EEVREAVEELDERAGRVLLEVSG- 134 (169)
T ss_pred HHCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHH----HHCCCCEEEECCCCH--HHHHHHHHHHHHHCCCEEEEECC-
T ss_conf 52799999999999679997099996019989999----846998999779999--99999999999758967999618-
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 9999999988897889999999999977269999820
Q gi|255764463|r 289 YAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 289 Yami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
-+++ |.+..+...|.|+|-+=
T Consensus 135 -----------gI~~-----~ni~~yA~tGvD~IS~g 155 (169)
T pfam01729 135 -----------GITL-----DNVLEYAKTGVDVISVG 155 (169)
T ss_pred -----------CCCH-----HHHHHHHHCCCCEEECC
T ss_conf -----------9999-----99999997699999858
No 380
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase; InterPro: IPR012697 This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely miss-annotated examples of methylisocitrate lyase, an enzyme of propionate utilization..
Probab=23.15 E-value=31 Score=16.00 Aligned_cols=208 Identities=17% Similarity=0.304 Sum_probs=114.4
Q ss_pred CCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11666758988110488878632889999999999998889367633025633455445421576537999999999730
Q gi|255764463|r 42 LPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337)
Q Consensus 42 ~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337)
+|-.-..|.+..-..-++|.. +..++-++.- .+++|.|---+| -.-|.+ ..|-.---|-||.|. |
T Consensus 37 fPavhmtGsGtsasmlGlPdl---Gftsvseqa~-----n~knivl~vdvP-vimdad--aGyGnamsvWratre----f 101 (294)
T TIGR02319 37 FPAVHMTGSGTSASMLGLPDL---GFTSVSEQAI-----NLKNIVLAVDVP-VIMDAD--AGYGNAMSVWRATRE----F 101 (294)
T ss_pred CCEEEEECCCCCHHHCCCCCC---CCHHHHHHHH-----HHCCEEEEECCC-EEEECC--CCCCCHHHHHHHHHH----H
T ss_conf 862675057620121046655---5102334544-----110045774144-577257--776521343333211----1
Q ss_pred CCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 14479861332710011431001365446289999999999999962897352466767799999999987788577300
Q gi|255764463|r 122 PNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIM 201 (337)
Q Consensus 122 pdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~Im 201 (337)
-.++|+.= -|..--.--.||-+... -.|.. .-|-|.|.+.-++-+.+.|+ |.
T Consensus 102 ervGivGy-hledqvnPkrCGhleGk-----------------------rlist-eemtGkieaavearededft---ii 153 (294)
T TIGR02319 102 ERVGIVGY-HLEDQVNPKRCGHLEGK-----------------------RLIST-EEMTGKIEAAVEAREDEDFT---II 153 (294)
T ss_pred HEEEEEEE-EECCCCCCCCCCCCCCC-----------------------EEEEC-CCCCCHHHHHHHCCCCCCEE---EE
T ss_conf 00124653-20024685324534564-----------------------34310-10011222222102567507---88
Q ss_pred CHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 33666435430101675310244677774431572114788988887664089879955311458999999962499899
Q gi|255764463|r 202 PYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTF 281 (337)
Q Consensus 202 sYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~ 281 (337)
+-+ --|.++- -+||+|.+...+.-|||-+... +|--..=.+++|+..+-|+.
T Consensus 154 art----------------------daresfG-----ldeairrsreyvaaGadCifle-amldveemkrvrdeidaPll 205 (294)
T TIGR02319 154 ART----------------------DARESFG-----LDEAIRRSREYVAAGADCIFLE-AMLDVEEMKRVRDEIDAPLL 205 (294)
T ss_pred EEC----------------------CCCHHCC-----HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHCCHHH
T ss_conf 622----------------------3301115-----1577776556552152153466-77437877777765141356
Q ss_pred EEECCHHH---------HHHH----HHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99346189---------9999----999888978899999999999772699
Q gi|255764463|r 282 AYQVSGEY---------AMIK----AASLQGWINKNDAMMESLLAFKRAGCD 320 (337)
Q Consensus 282 aYqVSGEY---------ami~----~a~~~g~~d~~~~~~E~l~~~kRAGAd 320 (337)
|-.|.|-- -.|- ---..||+---.++...++-++-||..
T Consensus 206 anmveGGktPWlttkelesiGynlaiyPlsGWmaaasvlrklftelreaGtt 257 (294)
T TIGR02319 206 ANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELREAGTT 257 (294)
T ss_pred HHHHCCCCCCCCCHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7764067876421022433010100000135789999999998888631550
No 381
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=23.10 E-value=59 Score=14.14 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCCC--CCEECH
Q ss_conf 9999999998778857--730033
Q gi|255764463|r 182 RVQEIRKKLDSHGHIN--VGIMPY 203 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~--~~ImsY 203 (337)
-|.+||+.|+++||.+ ||||.-
T Consensus 782 Vi~aiR~~L~~~GFlEVETPiLq~ 805 (1099)
T PRK02983 782 VLRAVRETLVAKGFLEVETPILQQ 805 (1099)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 999999999878988955754677
No 382
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.03 E-value=60 Score=14.13 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHCCCCEE
Q ss_conf 458999999962499899
Q gi|255764463|r 264 PYLDVCFRIKEKFGLPTF 281 (337)
Q Consensus 264 ~yLDii~~~k~~~~~P~~ 281 (337)
.+-|||++.....++||.
T Consensus 244 ~~~~il~~~~~~~~iPv~ 261 (282)
T cd07025 244 TLEEVLKEVLGDLGIPVL 261 (282)
T ss_pred CHHHHHHHHHHHCCCCEE
T ss_conf 399999998751798189
No 383
>PRK05086 malate dehydrogenase; Provisional
Probab=22.99 E-value=60 Score=14.12 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=17.2
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCC
Q ss_conf 893676330256334554454215765-3799999999973014
Q gi|255764463|r 81 GIPAIAIFPNIPMDLRNNTGSHIIDPD-NLINEGICAIKKNIPN 123 (337)
Q Consensus 81 GI~av~LFp~I~~~~Kd~~GseA~n~d-glv~rAIr~IK~~fpd 123 (337)
|-.-|++=.++|. +...+-.+-+..| .++....+.|++..|+
T Consensus 69 ~adiVvitAG~~r-kpG~tR~dLl~~Na~I~~~i~~~I~~~~p~ 111 (312)
T PRK05086 69 GADVVLISAGVAR-KPGMDRSDLFNVNAGIVKNLVEKVAKTCPK 111 (312)
T ss_pred CCCEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998789899-858988999998789999999988720897
No 384
>PRK07328 histidinol-phosphatase; Provisional
Probab=22.87 E-value=60 Score=14.11 Aligned_cols=69 Identities=7% Similarity=0.164 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 28899999999999988893676330256-----3345544542157653799999999973014479861332
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIP-----MDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVAL 132 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~-----~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcL 132 (337)
.++.+.+.+.++++.++|+..+.+=-..| +...++......+.-.-.-+.++.+|+++++|-|-+-+=.
T Consensus 13 ~~a~~~~ee~v~~Ai~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~i~I~~GiE~ 86 (268)
T PRK07328 13 GHATGTPEEYVEEARAKGLAEIGFTDHLPMYWLPPEWYDPPWAMRLEELPAYVSEVLRVRERFPDLPVRLGLEA 86 (268)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99888199999999987999899727999777874445854345688899999999999987259936755534
No 385
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=22.79 E-value=60 Score=14.10 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHH
Q ss_conf 99999997301447986133271001143100136544-6289999999999999962897-352466767799999999
Q gi|255764463|r 112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEI-VNDETIELISHAAVIQADAGAD-IIAPSEMMDGRVQEIRKK 189 (337)
Q Consensus 112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~I-dND~Tl~~L~k~Al~~A~AGaD-ivAPSdMMDGrV~aIR~~ 189 (337)
.+.+.+++.-+++.++.=+-| |+..|..+-..|.- .-.+.+..++++| .++|+| +||+- ..+..||+.
T Consensus 97 a~~~~~~~~~~~~kll~Vt~L---TS~~~~~l~~~~~~~~~~~~v~~~a~~a---~~~g~dGiVcs~----~e~~~ir~~ 166 (231)
T PRK00230 97 AAREGLEPGGSRPLLIAVTVL---TSMDEEDLAELGINLSLEEQVLRLAKLA---QEAGLDGVVCSA----QEAAALREA 166 (231)
T ss_pred HHHHHHHHCCCCCEEEEEEEE---CCCCHHHHHHCCCCCCHHHHHHHHHHHH---HHHCCCEEECCH----HHHHHHHHH
T ss_conf 999988714898759999962---3689889986675789999999999999---996998486388----899999864
Q ss_pred HHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 98778857730033666435430101675310244677774431572114788988887664089879955311
Q gi|255764463|r 190 LDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGL 263 (337)
Q Consensus 190 Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa~ 263 (337)
+..+ | .|++=-.. +.|+.+-=|-.+....+|++ -|||++.|=-+.
T Consensus 167 ~~~~-~---~ivTPGIr------------------~~~~~~~DQ~rv~TP~~Ai~-------~GAD~iVVGR~I 211 (231)
T PRK00230 167 TGPD-F---LLVTPGIR------------------PAGSDAGDQKRVMTPAQAIA-------AGSDYIVVGRPI 211 (231)
T ss_pred CCCC-C---EEECCCCC------------------CCCCCCCCCCCCCCHHHHHH-------CCCCEEEECCCC
T ss_conf 5987-1---89867727------------------78887567465689999998-------799999989845
No 386
>pfam00332 Glyco_hydro_17 Glycosyl hydrolases family 17.
Probab=22.57 E-value=53 Score=14.47 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=26.0
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCEECH
Q ss_conf 5246676779999999998778857730033
Q gi|255764463|r 173 IAPSEMMDGRVQEIRKKLDSHGHINVGIMPY 203 (337)
Q Consensus 173 vAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsY 203 (337)
+.=.-|.|-+|-++..+|++.||.++.|+==
T Consensus 203 ~~Y~NlFDA~vDAv~~Am~k~G~~~v~ivVs 233 (310)
T pfam00332 203 LGYQNLFDAMLDAVYAALEKAGGPSVEVVVS 233 (310)
T ss_pred CEECCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6022288889999999999759997179993
No 387
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.55 E-value=61 Score=14.06 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=24.8
Q ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCC--EEEEE-CCHH
Q ss_conf 876640898799553114589999999624998--99993-4618
Q gi|255764463|r 247 SIDIQESADMLLVKPGLPYLDVCFRIKEKFGLP--TFAYQ-VSGE 288 (337)
Q Consensus 247 ~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P--~~aYq-VSGE 288 (337)
....-+.-|.+||-|-.|=--|=+.-++-+.+| +|+|| .||+
T Consensus 117 ~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~ 161 (338)
T COG0059 117 LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGK 161 (338)
T ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 033776671899838999678999987369951699998668850
No 388
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=22.31 E-value=61 Score=14.03 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 8999999999999996289735246676779999999998
Q gi|255764463|r 152 DETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLD 191 (337)
Q Consensus 152 D~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld 191 (337)
.++.+.|.+.-..-.+.|--++-|+= ==||-+.+=-.|+
T Consensus 385 ~e~e~~l~~~I~et~~rGGkVLIPaF-AvGRaQEll~iL~ 423 (630)
T TIGR03675 385 EEAEKELIKVVNETIKRGGKVLIPVF-AVGRAQEVMLVLE 423 (630)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEE-CCCHHHHHHHHHH
T ss_conf 99999999999999963982999863-3653899999999
No 389
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.18 E-value=62 Score=14.02 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHH-----HHHHHHCCHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999998778857730033666-----435430101675310---24467777443157211478898888766408
Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAK-----FNSSFYGPYRDAIST---RDLLKGDKKTYYLDPANVQEAIREASIDIQES 253 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaK-----faS~fYgPFRdA~~S---~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EG 253 (337)
.-..+++.|.++||....|=+|+-. +... |---++-+|- +-++.++. +-.+.+|..+=++.+ ++|
T Consensus 220 ~~~~~~~~L~~~Gy~~yeisnfak~~~~~~hn~~-yw~~~~~lG~G~gA~s~~~~~--~~~N~~~~~~Y~~~i----~~~ 292 (374)
T PRK06294 220 MSLAAEELLTSQGFERYELASYAKPQAYSKHNTY-YWTDRPFLGLGVSASQYLHGI--RSKNLSRISHYLRAV----RKN 292 (374)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC-CCCCCCEEEEECCEEEECCCE--EEEECCCHHHHHHHH----HCC
T ss_conf 9999999999759830115666359960304123-457997599936921007981--698159999999999----879
Q ss_pred CCEEEECCCHHHHHHHH-----HHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCH
Q ss_conf 98799553114589999-----999624998999934618999999998889788
Q gi|255764463|r 254 ADMLLVKPGLPYLDVCF-----RIKEKFGLPTFAYQVSGEYAMIKAASLQGWINK 303 (337)
Q Consensus 254 AD~lMVKPa~~yLDii~-----~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~ 303 (337)
..-+.-...+.--|.++ .++-...+++..|+-.=.-..+....+.||+..
T Consensus 293 ~~~~~~~~~l~~~~~~~e~l~~~Lrl~~gv~~~~f~~~~~~~~l~~~~~~Gll~~ 347 (374)
T PRK06294 293 LPTQESMEELPPNERIKEALALRLRLCQGIPIADFPQELILELTMQPSIQGLFTQ 347 (374)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9941044456985899999998298528987899669889999999998898898
No 390
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=22.16 E-value=62 Score=14.01 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 899999999999988-89367633025633455445421576537999999999730144798613
Q gi|255764463|r 66 SIDVAVEKIKQVADL-GIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDV 130 (337)
Q Consensus 66 Sid~L~~eie~~~~l-GI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DV 130 (337)
+.+.++++.+.+.+. |.+++-+-.+..+... -...++++++.+||.-++.|.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~K~k~g~~~~~~-------------di~~v~avrea~~d~~l~vDa 220 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEE-------------EIEAVKALAEAFPGARLRLDP 220 (395)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-------------HHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999999998559865987469899799-------------999999999867998399878
No 391
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.03 E-value=62 Score=14.00 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Q ss_conf 554454215765379999999997301-447986
Q gi|255764463|r 96 RNNTGSHIIDPDNLINEGICAIKKNIP-NIGIIT 128 (337)
Q Consensus 96 Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~ 128 (337)
.|+.|-.--|---|+...+++||+..+ |..|..
T Consensus 183 tDeYGGSlENR~Rf~~Eii~aVr~~vg~df~vg~ 216 (361)
T cd04747 183 ADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIIL 216 (361)
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8878998798473699999999997299875999
No 392
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=22.01 E-value=62 Score=13.99 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78885856312898899986347788877331166675898811048887863288999999999999888936763
Q gi|255764463|r 11 ICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAI 87 (337)
Q Consensus 11 ~~p~~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~L 87 (337)
+.=.+|==|+.-|+++-.-+++.. .-|.||||.|...-..+ ..=+...+|=.++|.+--+.+.++|++-+++
T Consensus 5 ivWFRrDLRl~DN~aL~~A~~~~~----~~vlpvyi~dp~~~~~~-~~~~~~~~Fl~esL~~L~~~L~~~g~~L~i~ 76 (472)
T PRK10674 5 LVWFRNDLRLHDNLALAAACRDPS----ARVLALYIATPAQWAAH-NMAPRQAAFINAQLNALQIALAEKGIPLLFH 76 (472)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC----CCEEEEEEECHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999699975617899999997799----96999999856664068-9799999999999999999999779977999
No 393
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=21.86 E-value=63 Score=13.97 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHC---CCEEEECCCCCHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 79999999997301---44798613327100114310013--654462899999999999999628973524
Q gi|255764463|r 109 LINEGICAIKKNIP---NIGIITDVALDPFTIHGHDGILC--DGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 109 lv~rAIr~IK~~fp---dl~vi~DVcLc~YT~hGHcGi~~--~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
=++|+++.|++.-. +|+|.-.+++.+|.......-+. -..+.+.++++.|++.|-. .|.-+|.+
T Consensus 28 nl~k~~~li~eAa~~Ga~LivfPE~~~tgy~~~~~~~~~~~~a~~~~~gp~~~~l~~~Ar~---~~i~iv~g 96 (287)
T cd07568 28 MIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKE---YNMVLILP 96 (287)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 9999999999999885919987888656877654444788861705898899999999998---59289963
No 394
>pfam05315 ICEA ICEA Protein. This family consists of several ICEA proteins from Helicobacter pylori. Helicobacter pylori infection causes gastritis and peptic ulcer disease, and is classified as a definite carcinogen of gastric cancer. ICEA1 is speculated to be associated with peptic ulcer disease.
Probab=21.84 E-value=63 Score=13.97 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHH-HHHHHHC-CCEEEECCCCCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 21576537999999-9997301-447986133271001----14310013654462899999999999999628973524
Q gi|255764463|r 102 HIIDPDNLINEGIC-AIKKNIP-NIGIITDVALDPFTI----HGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 102 eA~n~dglv~rAIr-~IK~~fp-dl~vi~DVcLc~YT~----hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
..||+.....|.|| .||+.+. .-.+||-||=-+=++ +-.+|...|-.|.|-+|-.+--=|+|+-|---
T Consensus 75 ~GfN~~~~fnq~IR~DIk~~l~~q~Cv~cG~~G~sent~ievDHKng~~nD~Rv~~~~tQ~~~DFQ~Lck~cN~------ 148 (230)
T pfam05315 75 NGFNQECHFKQSIHKDIKDALKQQCCAMCGVNGKSENTKIEIDHKDGRKDDHRVSDIKTQKFDDFQALCKAAND------ 148 (230)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------
T ss_conf 25575433372477999999973985686435786663478734677656601057442408887999987608------
Q ss_pred CCCCCCHHHHHHHHHHHCC--CCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 6676779999999998778--85773003366643543010167531024467777443157211478
Q gi|255764463|r 176 SEMMDGRVQEIRKKLDSHG--HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQE 241 (337)
Q Consensus 176 SdMMDGrV~aIR~~Ld~~g--~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQmd~~n~~e 241 (337)
.-..|=+.-.+.| |.-+.|..- .-+||--=-+- .. ..|=--.||-||...+.
T Consensus 149 ------~KRQ~cKkckEt~~Rfda~ki~g~----~~~f~~g~~~y--~~--~~gcvgcy~yd~~~y~k 202 (230)
T pfam05315 149 ------KKRQICKKCKESGKRFDAKKIPGN----PYAFYEGDEEY--DE--ELGCVGCYQYDPIEYRK 202 (230)
T ss_pred ------HHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCCCCCC--CC--CCCEEEEEECCHHHHHH
T ss_conf ------889999988762750344206898----44511562002--77--78715643217999987
No 395
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=21.80 E-value=52 Score=14.50 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=5.8
Q ss_pred CCCCCCCCHHHHHHHH
Q ss_conf 4431572114788988
Q gi|255764463|r 230 KTYYLDPANVQEAIRE 245 (337)
Q Consensus 230 ~sYQmd~~n~~eA~~e 245 (337)
.++--++.|..|++.+
T Consensus 216 ~~~~st~~~iee~v~~ 231 (371)
T COG0686 216 HTLYSTPSNIEEAVKK 231 (371)
T ss_pred EEEECCHHHHHHHHHH
T ss_conf 9997589999987431
No 396
>PRK12928 lipoyl synthase; Provisional
Probab=21.80 E-value=63 Score=13.96 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC---
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431---
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD--- 141 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc--- 141 (337)
...++-.+.++....+|++-+.+=-+--++++|-- -+..-++|++||+..|++.|=. |.|=-...+.
T Consensus 87 lD~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgG-------A~hfa~~I~~Ir~~~P~~~iEv---LiPDF~G~~~~al 156 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGG-------AAHFVATIAAIRARNPGTGIEV---LTPDFWGGVARAL 156 (290)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-------HHHHHHHHHHHHHHCCCCEEEE---ECHHHCCCHHHHH
T ss_conf 98034799999999838976898412367886645-------2999999999984599867997---0711136878999
Q ss_pred -CCCCC-CCC--CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCC-CCCEECHHHHHHHHHHCCHH
Q ss_conf -00136-544--62899999999999999628973524667677999999999877885-77300336664354301016
Q gi|255764463|r 142 -GILCD-GEI--VNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHI-NVGIMPYVAKFNSSFYGPYR 216 (337)
Q Consensus 142 -Gi~~~-g~I--dND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~-~~~ImsYsaKfaS~fYgPFR 216 (337)
-++.- -+| -|=+|++.|-+.. +.| ++|. ...+|.|+.++++.
T Consensus 157 ~~v~~a~pdV~nHNiETV~rL~~~V----Rp~-----------------------A~Y~rSL~vL~~ak~~~~~------ 203 (290)
T PRK12928 157 ATVLAAKPDCFNHNLETVPRLQKAV----RRG-----------------------ADYQRSLDLLARAKELAPG------ 203 (290)
T ss_pred HHHHHCCCHHHHCCCCCCHHHCCCC----CCC-----------------------CHHHHHHHHHHHHHHHCCC------
T ss_conf 9998468546545501204317124----885-----------------------5089999999999973888------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 753102446777744315721147889888876640-8987995531145899999996249989999346189999999
Q gi|255764463|r 217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA 295 (337)
Q Consensus 217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a 295 (337)
+ --|++--+-..-..|-+.++..|..+ |.|||-+- -||- -....+||.-|---.||..++.-
T Consensus 204 --------i-~TKSgiMvGLGEt~eEv~~~~~DLr~~gvdilTiG---QYL~-----Ps~~h~pV~ryv~P~eF~~~~~~ 266 (290)
T PRK12928 204 --------I-PTKSGLMLGLGETEDEVIETLRDLRAVDCDRLTIG---QYLR-----PSLAHLPVQRYWTPEEFEALGQI 266 (290)
T ss_pred --------C-EEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCC-----CCCCCCCCEECCCHHHHHHHHHH
T ss_conf --------5-24134588605889999999999998199899824---0258-----88666883335698999999999
Q ss_pred HH
Q ss_conf 98
Q gi|255764463|r 296 SL 297 (337)
Q Consensus 296 ~~ 297 (337)
+.
T Consensus 267 a~ 268 (290)
T PRK12928 267 AR 268 (290)
T ss_pred HH
T ss_conf 99
No 397
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.59 E-value=63 Score=13.94 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99999999888936763302563345544542157---653799999999973014479
Q gi|255764463|r 71 VEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIID---PDNLINEGICAIKKNIPNIGI 126 (337)
Q Consensus 71 ~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n---~dglv~rAIr~IK~~fpdl~v 126 (337)
.+.++.+.++||+-+-| |+ ++. |+.--.+.+ .-.-+.+|+..+|+.|+++.+
T Consensus 105 ~~~l~~l~~~GvnRiSl-GV--Qsf-~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~ 159 (381)
T PRK09057 105 AGRFRGYRAAGVNRVSL-GV--QAL-NDADLRFLGRLHSVAEALAAIDLAREIFPRVSF 159 (381)
T ss_pred HHHHHHHHHHCCCEEEE-EC--CCC-CHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 67999999709876989-62--349-999999738999899999999999986545120
No 398
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=21.51 E-value=64 Score=13.93 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=26.7
Q ss_pred CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 166675898811048887863288999999999999888936763302
Q gi|255764463|r 43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAIFPN 90 (337)
Q Consensus 43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~~lGI~av~LFp~ 90 (337)
|.||.=+... |....-|++.+.++++.+..+|++.+.+.|+
T Consensus 69 pYlINl~s~~-------~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG 109 (280)
T COG0648 69 PYLINLASPE-------KEKVEKSIERLIDEIDRCEQLGAKLLVFHPG 109 (280)
T ss_pred CEEECCCCCC-------HHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 6045379997-------7899999999999999999749968997775
No 399
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=21.43 E-value=64 Score=13.92 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 6537999999999730144798613327100114310013654462899999999999999628973524
Q gi|255764463|r 106 PDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 106 ~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
+++.++|-++++|+.-++ .|+-=..=|||++++-| |.++ ..|.+.|+|.+.-
T Consensus 76 ~~dVL~Rf~~a~~a~~~~-~VVRvTGD~P~~dp~l~----------d~~v-------~~~l~~gaDY~s~ 127 (241)
T COG1861 76 EEDVLQRFIIAIKAYSAD-VVVRVTGDNPFLDPELV----------DAAV-------DRHLEKGADYVSN 127 (241)
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHH----------HHHH-------HHHHHCCCCCCCC
T ss_conf 899999999999735887-69996089987788999----------9999-------9998659860136
No 400
>PRK05481 lipoyl synthase; Provisional
Probab=21.36 E-value=64 Score=13.91 Aligned_cols=196 Identities=20% Similarity=0.254 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCC---
Q ss_conf 88999999999999888936763302563345544542157653799999999973014479861332710011431---
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHD--- 141 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DVcLc~YT~hGHc--- 141 (337)
.-.++-.+.++....+|++-+.|=-+.-++++|-- -+..-++|++||+..|++.|=. |.|== .|+-
T Consensus 79 ~D~~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgG-------A~hfa~~I~~Ir~~~P~~~iEv---LiPDF-~G~~~~~ 147 (289)
T PRK05481 79 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGG-------AQHFAETIRAIRELSPGTTIEV---LIPDF-RGRKDAA 147 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-------HHHHHHHHHHHHHHCCCCEEEE---CCCCC-CCCHHHH
T ss_conf 87030799999999828976999634166665655-------4999999999985599977997---07211-4699999
Q ss_pred --CCCCCC-CC--CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHH
Q ss_conf --001365-44--6289999999999999962897352466767799999999987788577300336664354301016
Q gi|255764463|r 142 --GILCDG-EI--VNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYR 216 (337)
Q Consensus 142 --Gi~~~g-~I--dND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFR 216 (337)
-++.-+ +| -|=+|++.|-+. |-|-.--+-. ..+|.|+.++
T Consensus 148 l~~v~~a~PdV~nHNiETV~rL~~~-----------VRp~a~Y~rS---------------L~vL~~~k~~--------- 192 (289)
T PRK05481 148 LEIVVAAPPDVFNHNLETVPRLYKR-----------VRPGADYERS---------------LELLKRAKEL--------- 192 (289)
T ss_pred HHHHHHCCHHHHHCCHHHHHHHCCC-----------CCCCCHHHHH---------------HHHHHHHHHH---------
T ss_conf 9999856717764351310443623-----------3882338999---------------9999999974---------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 753102446777744315721147889888876640-8987995531145899999996249989999346189999999
Q gi|255764463|r 217 DAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQE-SADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAA 295 (337)
Q Consensus 217 dA~~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~E-GAD~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a 295 (337)
.|.+ --|+.--+-..-.+|-+.++..|..+ |.|||-+- -||- -....+||.-|---.||..++..
T Consensus 193 -----~p~~-~TKSgiMvGLGEt~eEv~~~~~DL~~~gvdilTiG---QYL~-----Ps~~hlpV~ryv~P~eF~~~~~~ 258 (289)
T PRK05481 193 -----DPGI-PTKSGLMVGLGETDEEVLEVMDDLRAHGVDILTIG---QYLQ-----PSRKHLPVERYVTPEEFDEYKEI 258 (289)
T ss_pred -----CCCC-CEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCC-----CCCCCCCCEECCCHHHHHHHHHH
T ss_conf -----8998-24135677557889999999999998199899834---0358-----88666884335698999999999
Q ss_pred HH-CCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
Q ss_conf 98-88978899999999999772699998201899999
Q gi|255764463|r 296 SL-QGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAAR 332 (337)
Q Consensus 296 ~~-~g~~d~~~~~~E~l~~~kRAGAd~IitY~A~~~a~ 332 (337)
+. .|+. .+ -+|-=.==||.|.+..+
T Consensus 259 a~~~GF~---~V---------~SgPlVRSSY~A~~~~~ 284 (289)
T PRK05481 259 ALELGFL---HV---------ASGPLVRSSYHADEQFK 284 (289)
T ss_pred HHHCCCC---EE---------EECCCCCCCHHHHHHHH
T ss_conf 9975996---79---------82374002042689986
No 401
>pfam06866 DUF1256 Protein of unknown function (DUF1256). This family consists of several uncharacterized bacterial proteins which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown. These proteins are related to peptidase family M63 and so may be peptidases.
Probab=21.33 E-value=64 Score=13.90 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=52.5
Q ss_pred CEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 166675898811048887863288999999999999-8889367633025633455445421576537999999999730
Q gi|255764463|r 43 PIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVA-DLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNI 121 (337)
Q Consensus 43 PiFV~eg~~~k~~I~SMPGv~R~Sid~L~~eie~~~-~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~f 121 (337)
.+||+=|.+. ..=|.|---+...+ +.+.+.+-+||- ++++- +|.| +.+.+..|++++
T Consensus 28 ~VilCIGTDR------------stGDsLGPLVGt~L~~~~~~~~~VyGT----L~~PV--HA~N----L~e~l~~I~~~~ 85 (164)
T pfam06866 28 IVILCIGTDR------------STGDSLGPLVGTLLKEKNIPNLNVYGT----LEEPV--HAVN----LKEKLKEIKKKH 85 (164)
T ss_pred EEEEEECCCC------------CCCCCCCCHHHHHHHHCCCCCCEEEEC----CCCCC--CHHC----HHHHHHHHHHHC
T ss_conf 6999989988------------642015505589987548999658768----99982--2205----999999999868
Q ss_pred CC-CEEEECCCCCHHHCCCCC
Q ss_conf 14-479861332710011431
Q gi|255764463|r 122 PN-IGIITDVALDPFTIHGHD 141 (337)
Q Consensus 122 pd-l~vi~DVcLc~YT~hGHc 141 (337)
|+ .+|..|-||-.-.+-|.=
T Consensus 86 ~~p~IIAIDAcLG~~~~vG~I 106 (164)
T pfam06866 86 KNPFIIAIDACLGASNNIGHI 106 (164)
T ss_pred CCCEEEEEECCCCCCCCCCEE
T ss_conf 998089998867985656289
No 402
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=21.29 E-value=64 Score=13.90 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHC-CCEEEECCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 9999997301-44798613327100114310013654462899999999999999628973524
Q gi|255764463|r 113 GICAIKKNIP-NIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAP 175 (337)
Q Consensus 113 AIr~IK~~fp-dl~vi~DVcLc~YT~hGHcGi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAP 175 (337)
.++.+|.--- -+-|+.-+-|-|=.-|=--|.=-.| -||++-+-|-++|+++++||+-.+--
T Consensus 122 ~~e~v~~LT~~GvpV~GH~GLtPQsV~~~GGYk~qG--k~~~~~~kLL~dAl~LeeAGv~lLVL 183 (267)
T TIGR00222 122 LVETVKALTEEGVPVVGHLGLTPQSVRLLGGYKVQG--KDEEAAKKLLEDALALEEAGVQLLVL 183 (267)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCEEEECCCEEECC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999986278458741478873340057400027--88788888999999999876674353
No 403
>pfam00863 Peptidase_C4 Peptidase family C4. This peptidase is present in the nuclear inclusion protein of potyviruses.
Probab=21.23 E-value=33 Score=15.89 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=10.1
Q ss_pred CCCCEEECCCCCCCCCCC
Q ss_conf 898811048887863288
Q gi|255764463|r 49 GEKTVESINSMPDVMRMS 66 (337)
Q Consensus 49 g~~~k~~I~SMPGv~R~S 66 (337)
..|..-.|.|.-|.|...
T Consensus 50 rnnG~L~i~s~hG~f~v~ 67 (233)
T pfam00863 50 RNNGTLTIRSQHGEFTVK 67 (233)
T ss_pred CCCCEEEEEECCCEEECC
T ss_conf 489729999613269848
No 404
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.20 E-value=65 Score=13.88 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 89999999624-9989999346189999999988897889999999999977269999820
Q gi|255764463|r 266 LDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTY 325 (337)
Q Consensus 266 LDii~~~k~~~-~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~l~~~kRAGAd~IitY 325 (337)
.++|+.+|+.. +.|++. -|-++-. |....+.+||||.|++=
T Consensus 163 ~e~V~~vk~~l~~~~Liv---------------GGGIrs~----e~a~~~~~AgAD~IVvG 204 (219)
T cd02812 163 PEVVRAVKKVLGDTPLIV---------------GGGIRSG----EQAKEMAEAGADTIVVG 204 (219)
T ss_pred HHHHHHHHHHCCCCEEEE---------------ECCCCCH----HHHHHHHHCCCCEEEEC
T ss_conf 999999998467970999---------------2897999----99999998699999988
No 405
>pfam00762 Ferrochelatase Ferrochelatase.
Probab=21.08 E-value=65 Score=13.87 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 328899999999999988893676330256334554454
Q gi|255764463|r 63 MRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGS 101 (337)
Q Consensus 63 ~R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~Gs 101 (337)
+||+--.+.+.++++.+.|+..+++||--|.......||
T Consensus 93 mry~~P~i~~~l~~l~~~g~~~ii~lplyPqyS~~Tt~s 131 (312)
T pfam00762 93 MRYGPPSIEDALEELKADGVDRIVVLPLYPQYSASTTGS 131 (312)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf 556899778899999965987699997775423030769
No 406
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=21.07 E-value=65 Score=13.87 Aligned_cols=166 Identities=18% Similarity=0.271 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC
Q ss_conf 28899999999999988893676330256334554454215765379999999997301-44798613327100114310
Q gi|255764463|r 64 RMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 64 R~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337)
.-+.+...+++++..+.|.++|-+=.+.+. .+ -.+.++.+++.+| ++-++.|.. +.||
T Consensus 83 ~~~~~~~~~~~~~~~~~G~~~~Kikvg~~~-~~-------------d~~~v~~ir~~~g~~~~l~vDan-~~~~------ 141 (265)
T cd03315 83 LGEPAEVAEEARRALEAGFRTFKLKVGRDP-AR-------------DVAVVAALREAVGDDAELRVDAN-RGWT------ 141 (265)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCH-HH-------------HHHHHHHHHHHCCCCCEEEECCC-CCCC------
T ss_conf 999999999999999759998999768985-99-------------99999999987299967985787-7889------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-C--CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHH
Q ss_conf 01365446289999999999999962897352-4--66767799999999987788577300336664354301016753
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIA-P--SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI 219 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivA-P--SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~ 219 (337)
-++.+ +.+-...+.|..++= | .+=.+| .+.+|+. .+++|.
T Consensus 142 --------~~~A~----~~~~~l~~~~i~w~EeP~~~~d~~~-~~~L~~~------~~ipIa------------------ 184 (265)
T cd03315 142 --------PKQAI----RALRALEDLGLDYVEQPLPADDLEG-RAALARA------TDTPIM------------------ 184 (265)
T ss_pred --------HHHHH----HHHHHHCCCCCEEEECCCCCCCHHH-HHHHHHC------CCCCEE------------------
T ss_conf --------99999----9998640058548847899899999-9999851------999999------------------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC----HHHHHHHHHHHHHCCCCEEEEECC----HHHHH
Q ss_conf 1024467777443157211478898888766408987995531----145899999996249989999346----18999
Q gi|255764463|r 220 STRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPG----LPYLDVCFRIKEKFGLPTFAYQVS----GEYAM 291 (337)
Q Consensus 220 ~S~p~~~gdr~sYQmd~~n~~eA~~e~~~D~~EGAD~lMVKPa----~~yLDii~~~k~~~~~P~~aYqVS----GEYam 291 (337)
+|-..| +..+..+-+. ...+|++.+||. +.-.=-|..+.+.+++|+..-+-. |-.|.
T Consensus 185 -------~gEs~~-----~~~~~~~~i~---~~~~d~v~~d~~~~GGit~~~kia~~A~~~gi~~~~~~~~~s~i~~aA~ 249 (265)
T cd03315 185 -------ADESAF-----TPHDAFRELA---LGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLAN 249 (265)
T ss_pred -------ECCCCC-----CHHHHHHHHH---HHCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHH
T ss_conf -------089879-----9999999998---7261341408776474999999999999869958978965359999999
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999888978
Q gi|255764463|r 292 IKAASLQGWIN 302 (337)
Q Consensus 292 i~~a~~~g~~d 302 (337)
++.|+.--.++
T Consensus 250 ~hlaaa~pn~~ 260 (265)
T cd03315 250 AHLAAALRAVT 260 (265)
T ss_pred HHHHHCCCCCC
T ss_conf 99997399999
No 407
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=21.04 E-value=65 Score=13.88 Aligned_cols=86 Identities=26% Similarity=0.395 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHC--CCEEEECCCCCHHHCCCCC
Q ss_conf 999999999988893676330256334554-----454215765379999999997301--4479861332710011431
Q gi|255764463|r 69 VAVEKIKQVADLGIPAIAIFPNIPMDLRNN-----TGSHIIDPDNLINEGICAIKKNIP--NIGIITDVALDPFTIHGHD 141 (337)
Q Consensus 69 ~L~~eie~~~~lGI~av~LFp~I~~~~Kd~-----~GseA~n~dglv~rAIr~IK~~fp--dl~vi~DVcLc~YT~hGHc 141 (337)
++...|++..+.|+-++ +|++..--. .|.+=-+.|.- ++=|++..+.=+ |++||+=+ |.+-.-|-
T Consensus 90 nvaRTVreme~AGaAa~----HiEDQv~pKrCGHL~gK~lv~~~eM-v~kI~AAv~Ar~De~f~iiART--DA~AvEGl- 161 (287)
T TIGR02317 90 NVARTVREMEDAGAAAV----HIEDQVLPKRCGHLNGKELVSRDEM-VRKIKAAVDARRDEDFVIIART--DARAVEGL- 161 (287)
T ss_pred HHHHHHHHHHHHHHHHC----CHHHHCCCCCCCCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCEEEECC--HHHHHCCH-
T ss_conf 49999999998445400----4677425442678988740488779-9999997147899972775310--23421365-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 00136544628999999999999996289735246
Q gi|255764463|r 142 GILCDGEIVNDETIELISHAAVIQADAGADIIAPS 176 (337)
Q Consensus 142 Gi~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPS 176 (337)
|..++ =|..|-|||||+|=|=
T Consensus 162 ----------d~AI~----RA~aYvEAGAD~IFpE 182 (287)
T TIGR02317 162 ----------DAAIE----RAKAYVEAGADMIFPE 182 (287)
T ss_pred ----------HHHHH----HHHHHHHHCCCCCHHH
T ss_conf ----------88999----9986787261531387
No 408
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=20.97 E-value=65 Score=13.85 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHHHCCCC-EEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999962897-3524667677999999999877885
Q gi|255764463|r 163 VIQADAGAD-IIAPSEMMDGRVQEIRKKLDSHGHI 196 (337)
Q Consensus 163 l~~A~AGaD-ivAPSdMMDGrV~aIR~~Ld~~g~~ 196 (337)
...-++||+ +|.=+.-.+--+.+||..+....|.
T Consensus 93 ~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~ 127 (210)
T PRK09935 93 GRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFF 127 (210)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99996687768867899999999999998599536
No 409
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=20.96 E-value=7.8 Score=20.09 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCCCHHHCCCCEEEE------CCCCCEEEC---CCCC-C-----CCCCCHH--HHHHHHHHHHHCCCCEEE
Q ss_conf 889998634778887733116667------589881104---8887-8-----6328899--999999999988893676
Q gi|255764463|r 24 NWIREMVREHRLSVSDLILPIFLT------SGEKTVESI---NSMP-D-----VMRMSID--VAVEKIKQVADLGIPAIA 86 (337)
Q Consensus 24 ~~iR~Lv~Et~Ls~~dLI~PiFV~------eg~~~k~~I---~SMP-G-----v~R~Sid--~L~~eie~~~~lGI~av~ 86 (337)
+.++.++..+.|.+++. -=+++- +|.|.-..+ .+|| + |.|.--. ..+...-..+..|---+.
T Consensus 32 ~ai~~~l~r~gi~~~~I-d~vi~G~~~~~g~g~n~aR~~~l~aGlp~~vp~~tV~r~CaSG~~Ai~~A~~~I~sG~~dvv 110 (393)
T PRK05790 32 IVIKAALERAGVPPEQV-DEVIMGQVLQAGAGQNPARQAAIKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIV 110 (393)
T ss_pred HHHHHHHHHCCCCHHHC-CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999829898999-98999933656655549999999679998876489963115768999999998747997689
Q ss_pred EEECCCC
Q ss_conf 3302563
Q gi|255764463|r 87 IFPNIPM 93 (337)
Q Consensus 87 LFp~I~~ 93 (337)
|=+++++
T Consensus 111 lagGvEs 117 (393)
T PRK05790 111 VAGGQES 117 (393)
T ss_pred EEECCCC
T ss_conf 9954432
No 410
>PRK09483 response regulator; Provisional
Probab=20.91 E-value=66 Score=13.84 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=52.6
Q ss_pred HHHCCCCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHH-HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99628973524-667677999999999877885773003366643543-0101675310244677774431572114788
Q gi|255764463|r 165 QADAGADIIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSF-YGPYRDAISTRDLLKGDKKTYYLDPANVQEA 242 (337)
Q Consensus 165 ~A~AGaDivAP-SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~f-YgPFRdA~~S~p~~~gdr~sYQmd~~n~~eA 242 (337)
.-++||+-.-+ +.-.+--+.+||..+...-|..-.+ +... .+.++ |. .+..-.++-+ -
T Consensus 93 al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~-------~~~~~~~~~~------~~--~~~~~~~LT~-----R 152 (216)
T PRK09483 93 VMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDI-------AQQMALSQFE------PA--TENPFASLSE-----R 152 (216)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH-------HHHHHHHCCC------CC--CCCCCCCCCH-----H
T ss_conf 9974887899479999999999999985997069899-------9999873237------65--4565456899-----9
Q ss_pred HHHHHHHHHCCC------CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHH
Q ss_conf 988887664089------879955311458999999962499899993461899999999888978899
Q gi|255764463|r 243 IREASIDIQESA------DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKND 305 (337)
Q Consensus 243 ~~e~~~D~~EGA------D~lMVKPa~~yLDii~~~k~~~~~P~~aYqVSGEYami~~a~~~g~~d~~~ 305 (337)
-+|+..-+.+|- .-+-+-+..-- --++.+-++ -+|+.---.+..|-++|++|.+.
T Consensus 153 E~eVl~ll~~G~snkeIA~~L~iS~~TV~-~h~~~i~~K-------L~v~~r~el~~~A~~~gli~~~~ 213 (216)
T PRK09483 153 ELQIMLMITKGQKVNEISEQLNLSPKTVN-SYRYRMFSK-------LNISGDVELTHLAIRHGLLNAET 213 (216)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHH-HHHHHHHHH-------HCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 99999999879999999999698999999-999999998-------09999999999999959918888
No 411
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.65 E-value=66 Score=13.81 Aligned_cols=95 Identities=23% Similarity=0.367 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEECCCCCHHHCCCCCC
Q ss_conf 89999999999998889367633025633--4554454215765379999999997301-44798613327100114310
Q gi|255764463|r 66 SIDVAVEKIKQVADLGIPAIAIFPNIPMD--LRNNTGSHIIDPDNLINEGICAIKKNIP-NIGIITDVALDPFTIHGHDG 142 (337)
Q Consensus 66 Sid~L~~eie~~~~lGI~av~LFp~I~~~--~Kd~~GseA~n~dglv~rAIr~IK~~fp-dl~vi~DVcLc~YT~hGHcG 142 (337)
..+.+.+.++.+.+.|...|=|=-+=|.. .|...|+.-..+-.++.+.++++++..+ -+.|=+=+
T Consensus 65 ~p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvKiRl------------ 132 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL------------ 132 (231)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEE------------
T ss_conf 89999999998875399999983899969970898307876297899999999997569947999970------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf 013654462899999999999999628973524667677999
Q gi|255764463|r 143 ILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQ 184 (337)
Q Consensus 143 i~~~g~IdND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~ 184 (337)
|.-+++.| .+.+-...++|++.+. .-||..
T Consensus 133 ----g~~~~~~~----~~~~~~l~~~G~~~lt----vH~Rt~ 162 (231)
T cd02801 133 ----GWDDEEET----LELAKALEDAGASALT----VHGRTR 162 (231)
T ss_pred ----CCCCHHHH----HHHHHHHHHCCCCEEE----EECCCH
T ss_conf ----77863479----9999999976998999----835614
No 412
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=20.65 E-value=66 Score=13.81 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=6.3
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999730144
Q gi|255764463|r 112 EGICAIKKNIPNI 124 (337)
Q Consensus 112 rAIr~IK~~fpdl 124 (337)
..++.||+.-|++
T Consensus 65 ~ll~~i~~~~~~~ 77 (464)
T COG2204 65 ELLKEIKSRDPDL 77 (464)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999638999
No 413
>PRK07985 oxidoreductase; Provisional
Probab=20.60 E-value=66 Score=13.80 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHCCCEE
Q ss_conf 799999999973014479
Q gi|255764463|r 109 LINEGICAIKKNIPNIGI 126 (337)
Q Consensus 109 lv~rAIr~IK~~fpdl~v 126 (337)
-+.+.+..+.++|+.+-+
T Consensus 114 ~v~~lv~~~~~~fG~iDi 131 (294)
T PRK07985 114 FARSLVHEAHKALGGLDI 131 (294)
T ss_pred HHHHHHHHHHHHHCCCCE
T ss_conf 999999999998599888
No 414
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=20.58 E-value=67 Score=13.80 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q ss_conf 9999999997726999982
Q gi|255764463|r 306 AMMESLLAFKRAGCDGIFT 324 (337)
Q Consensus 306 ~~~E~l~~~kRAGAd~Iit 324 (337)
...+-+..++++|||+|+|
T Consensus 210 i~~~kl~~~~~~gAD~ivt 228 (290)
T TIGR03288 210 MTKEKLENMKEAGADCIVN 228 (290)
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999749999980
No 415
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963 This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=20.55 E-value=31 Score=16.07 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=8.4
Q ss_pred CCHHHCCCCEEEECCCCCEEEC
Q ss_conf 8887733116667589881104
Q gi|255764463|r 35 LSVSDLILPIFLTSGEKTVESI 56 (337)
Q Consensus 35 Ls~~dLI~PiFV~eg~~~k~~I 56 (337)
|.+|||||+.+|..=.+-++|+
T Consensus 348 LR~NdL~WnY~vdnYLKG~~P~ 369 (541)
T TIGR01838 348 LRENDLIWNYYVDNYLKGKSPV 369 (541)
T ss_pred CCCCCEEECCCCCCCCCCCCCC
T ss_conf 2468702066304314677578
No 416
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.39 E-value=67 Score=13.77 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 889999999999998889367633025633455445421576537999999999730144798613
Q gi|255764463|r 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDV 130 (337)
Q Consensus 65 ~Sid~L~~eie~~~~lGI~av~LFp~I~~~~Kd~~GseA~n~dglv~rAIr~IK~~fpdl~vi~DV 130 (337)
-+.+.+.++++...+.|.+++-+= +.+. + -...|++|++.+||+.++.|.
T Consensus 136 ~~~e~~~~~~~~~~~~Gf~~~Kik--v~~~-~-------------di~~v~~ir~~~~d~~l~vDa 185 (354)
T cd03317 136 DDVEQLLKQIERYLEEGYKRIKLK--IKPG-W-------------DVEPLKAVRERFPDIPLMADA 185 (354)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--CCCH-H-------------HHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999997798767640--1851-2-------------599999999865797399626
No 417
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.36 E-value=67 Score=13.77 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECC-------C---HHHHHHHHHHHHHCCCCEEE
Q ss_conf 5721147889888876640898799553-------1---14589999999624998999
Q gi|255764463|r 234 LDPANVQEAIREASIDIQESADMLLVKP-------G---LPYLDVCFRIKEKFGLPTFA 282 (337)
Q Consensus 234 md~~n~~eA~~e~~~D~~EGAD~lMVKP-------a---~~yLDii~~~k~~~~~P~~a 282 (337)
..+.+.++|.+ -++.|||.|++.= + .+-+.++.++++.+++|+.+
T Consensus 107 ~~v~s~~~A~~----a~~~GaD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~~ipvia 161 (236)
T cd04730 107 PTVTSVEEARK----AEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIA 161 (236)
T ss_pred EECCCHHHHHH----HHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 95898999999----99818998999777777788987555677999999982986896
No 418
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=20.09 E-value=51 Score=14.58 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHCCC-CCCCEE
Q ss_conf 6767799999999987788-577300
Q gi|255764463|r 177 EMMDGRVQEIRKKLDSHGH-INVGIM 201 (337)
Q Consensus 177 dMMDGrV~aIR~~Ld~~g~-~~~~Im 201 (337)
.+||-.||.|-++|++.|. .||.|+
T Consensus 260 ~~vD~~IG~il~~L~e~Gl~dNTiII 285 (500)
T TIGR03417 260 SYLDDKIGELLQTLEETRQADDTIVL 285 (500)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999999999971996672899
No 419
>pfam03431 RNA_replicase_B RNA replicase, beta-chain. This family is of Leviviridae RNA replicases. The replicase is also known as RNA dependent RNA polymerase.
Probab=20.09 E-value=68 Score=13.73 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=43.5
Q ss_pred CHHHH--HHHHHHHHHHHHH-------------CCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCC
Q ss_conf 62899--9999999999996-------------28973524667677999999999877885773003366643543010
Q gi|255764463|r 150 VNDET--IELISHAAVIQAD-------------AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGP 214 (337)
Q Consensus 150 dND~T--l~~L~k~Al~~A~-------------AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgP 214 (337)
-|--| ||-|.=.|++.+- =|-|||.||+. +....+.|.-.||.--.=- +-.=||
T Consensus 300 GNGftFELESlIFaAlars~~~l~~~~~~~v~iYGDDII~ps~~----~~~L~~vl~yvGF~pN~~K-------TF~~Gp 368 (539)
T pfam03431 300 GNGFTFELESLIFAALARSVCELLGGRTSDVGIYGDDIIVPTCA----VPPLMEVLSYVGFTPNLKK-------TFTSGP 368 (539)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECHHH----HHHHHHHHHHHCCCCCCCC-------CCCCCC
T ss_conf 68426658999999999999999668875058843746632222----1899999988075468666-------435686
Q ss_pred HHHHHHCCCCCCC-CCCC
Q ss_conf 1675310244677-7744
Q gi|255764463|r 215 YRDAISTRDLLKG-DKKT 231 (337)
Q Consensus 215 FRdA~~S~p~~~g-dr~s 231 (337)
||+-.|-. -|.| |-+.
T Consensus 369 FRESCGkH-~f~GvDVtP 385 (539)
T pfam03431 369 FRESCGKH-YFAGVDVTP 385 (539)
T ss_pred CHHHHHHH-HCCCCCCCC
T ss_conf 14455454-306777754
No 420
>pfam02057 Glyco_hydro_59 Glycosyl hydrolase family 59.
Probab=20.05 E-value=68 Score=13.73 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCC----CCHHHHHHHHHH-HHHHHHHCCC--CEEEC---CCCCCC
Q ss_conf 9999999730144798613327100114310013654----462899999999-9999996289--73524---667677
Q gi|255764463|r 112 EGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGE----IVNDETIELISH-AAVIQADAGA--DIIAP---SEMMDG 181 (337)
Q Consensus 112 rAIr~IK~~fpdl~vi~DVcLc~YT~hGHcGi~~~g~----IdND~Tl~~L~k-~Al~~A~AGa--DivAP---SdMMDG 181 (337)
.-++..|+.-|+|-++. =|. +-=|-+.+|. ..-+.|..-... +--.+..-|- |.|.+ ..--..
T Consensus 116 wLm~eAKkrNPnIkl~g----LpW---~~PGWvg~g~~~p~~~~~~ta~Y~~~Wilga~~~hgl~iDYig~wNEr~~~~~ 188 (669)
T pfam02057 116 WLMKEAKKRNPNIILMG----LPW---SFPGWLGKGFSWPYVNLQLTAYYVVTWIVGAKHYHDLDIDYIGIWNERSFDAN 188 (669)
T ss_pred EEHHHHHHHCCCCEEEE----ECC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH
T ss_conf 24455775389966867----136---78730268877876466788899999999899863987177511004688757
Q ss_pred HHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHH
Q ss_conf 9999999998778857730033666435430101675
Q gi|255764463|r 182 RVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDA 218 (337)
Q Consensus 182 rV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA 218 (337)
-|+..|++||.+||.+|.|..-- ++.+|+-++
T Consensus 189 ~ik~lR~~ld~~g~~~vKIVa~D-----~~w~~i~~~ 220 (669)
T pfam02057 189 YIKELRKMLNYQGLQRVKIIASD-----NLWEPISAS 220 (669)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEC-----CCCCCCHHH
T ss_conf 99999999866443644899957-----887665344
Done!