HHsearch results for GI: 255764463 and protein with PDBid: 3kdn_A
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=95.72 E-value=0.05 Score=33.47 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHC--CC--EEEECCCCCH-HH------CCCCCCCCC-----CC----CC---CHHHHHHHHHHHH
Q ss_conf 65379999999997301--44--7986133271-00------114310013-----65----44---6289999999999
Q gi|255764463|r 106 PDNLINEGICAIKKNIP--NI--GIITDVALDP-FT------IHGHDGILC-----DG----EI---VNDETIELISHAA 162 (337)
Q Consensus 106 ~dglv~rAIr~IK~~fp--dl--~vi~DVcLc~-YT------~hGHcGi~~-----~g----~I---dND~Tl~~L~k~A 162 (337)
+.++-+-.-..+-+.|. ++ +-+.|+-|-+ |. .+|-.|+=+ ++ -| .---|-+.+++++
T Consensus 98 ~~~l~~llt~i~GNv~~~~~v~~lrL~Di~lP~~~~~~f~GP~fGI~G~R~~lgv~~RPLlgtiiKPk~GLsp~~~a~~~ 177 (444)
T 3kdn_A 98 EANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLA 177 (444)
T ss_dssp TTCHHHHHHHHTTGGGGBTTEEEEEEEEEECCHHHHTTCCCCSSHHHHHHHHHTCCSSCEEEECCSSSSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 77788999999600257764554179775189999747899998768899984888884357755676689989999999
Q ss_pred HHHHHCCCCEEEC--------CCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999628973524--------66767799999999987788577300336664354301016753102446777744315
Q gi|255764463|r 163 VIQADAGADIIAP--------SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYL 234 (337)
Q Consensus 163 l~~A~AGaDivAP--------SdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~~~gdr~sYQm 234 (337)
-.++..|.|+|-= -.=++-||.++.++++ -+-.-.|-|+-|-.
T Consensus 178 ye~~~GGvDfIKDDE~l~~q~~~p~~eRv~~~~~ai~-----------------------------~a~~eTG~~~~Ya~ 228 (444)
T 3kdn_A 178 YDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIID-----------------------------KVENETGEKKTWFA 228 (444)
T ss_dssp HHHHHTTCCEEECCTTCCSCTTSCHHHHHHHHHHHHH-----------------------------HHHHHHCCCCEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------------------------HHHHHHCCCCEEEE
T ss_conf 9997168774537734678765738999999999999-----------------------------99998688765886
Q ss_pred CCCH-HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7211-478898888766408987995531145899999996---249989999346189999999988897889999999
Q gi|255764463|r 235 DPAN-VQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310 (337)
Q Consensus 235 d~~n-~~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~~~P~~aYqVSGEYami~~a~~~g~~d~~~~~~E~ 310 (337)
+... ..|-++.+..=.+.|+..+||-|...=++.++.+++ .+.+|+ -+|-+|-=++. .....| ++. .+ -
T Consensus 229 NIT~~~~em~~ra~~a~e~G~~~vmv~~~~~G~~al~~lr~~~~~~~l~I-h~HrA~~ga~~-r~~~~G-is~-~v---l 301 (444)
T 3kdn_A 229 NITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAI-HGHRAMHAAFT-RNPYHG-ISM-FV---L 301 (444)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHHHHHTCEE-EEECTTTHHHH-SCTTSE-ECH-HH---H
T ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEE-EEECCCCEEEE-CCCCCC-CCH-HH---H
T ss_conf 14797789999999999749967999605677079999999721169558-85046650110-387776-049-99---9
Q ss_pred HHHHHHHCCCEEEECH
Q ss_conf 9999772699998201
Q gi|255764463|r 311 LLAFKRAGCDGIFTYF 326 (337)
Q Consensus 311 l~~~kRAGAd~IitY~ 326 (337)
..-.+++|+|.|.+.-
T Consensus 302 ~kl~Rl~G~D~ih~~~ 317 (444)
T 3kdn_A 302 AKLYRLIGIDQLHVGT 317 (444)
T ss_dssp HHHHHHHTCSEEECCC
T ss_pred HHHHHHHCCCEEECCC
T ss_conf 9999984858266057