HHSEARCH alignment of GI: 255764463 and SCOP domain: d1wdda1

Alignment
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=95.73  E-value=0.032  Score=33.15  Aligned_cols=137  Identities=15%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHH-------HHHCCCCC
Q ss_conf             99999999999999628973524667677999999999877885773003366643543010167-------53102446
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD-------AISTRDLL  225 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRd-------A~~S~p~~  225 (337)
                      .|.+.+++++..++..|+|+|-=                .++..|-+            |.||++       |+.-+..-
T Consensus        30 lsp~~~a~~~~~~~~GGvD~IKD----------------DE~l~~~~------------~~p~~eRv~~~~~av~~a~~e   81 (325)
T d1wdda1          30 LSAKNYGRACYECLRGGLDFTKD----------------DENVNSQP------------FMRWRDRFVFCAEAIYKSQAE   81 (325)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEC----------------CTTCSSBT------------TBCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEC----------------CCCCCCCC------------CCCHHHHHHHHHHHHHHHHHH
T ss_conf             99799999999997238754247----------------76567888------------765688899999999999995


Q ss_pred             CCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf             77774431572114--78898888766408987995531145899999996---24998999934618999999998889
Q gi|255764463|r  226 KGDKKTYYLDPANV--QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSGEYAMIKAASLQGW  300 (337)
Q Consensus       226 ~gdr~sYQmd~~n~--~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~---~~~~P~~aYqVSGEYami~~a~~~g~  300 (337)
                      .|-|+.|-.+..+.  .|-++.+..=.+.|++.+||-|...=++.++.+++   ...+|+.+ |=+|-=++ -.....| 
T Consensus        82 TG~~k~y~~nit~~~~~em~~ra~~a~e~G~~~~mi~~~~~G~~a~~~l~~~~~~~~l~ih~-Hra~~ga~-tr~~~~G-  158 (325)
T d1wdda1          82 TGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHI-HRAMHAVI-DRQKNHG-  158 (325)
T ss_dssp             HSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEE-ECTTHHHH-HSCSSSE-
T ss_pred             HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC-CCCCCCCC-CCCCCCC-
T ss_conf             69820697316889999999999999981998898830454288899999863013754421-41201010-1487777-


Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             788999999999997726999982
Q gi|255764463|r  301 INKNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       301 ~d~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      ++.. + +-  .-.+-||||.|++
T Consensus       159 is~~-v-l~--kl~RLaGaD~ih~  178 (325)
T d1wdda1         159 MHFR-V-LA--KALRMSGGDHIHA  178 (325)
T ss_dssp             ECHH-H-HH--HHHHHHCCSEEEC
T ss_pred             CCHH-H-HH--HHHHHCCCCCCCC
T ss_conf             0699-9-99--9999818781004


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]