HHSEARCH alignment of GI: 255764463 and SCOP domain: d1ykwa1

Alignment
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Probab=95.27  E-value=0.033  Score=33.08  Aligned_cols=135  Identities=14%  Similarity=0.164  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEE--------CCCCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf             9999999999999962897352--------46676779999999998778857730033666435430101675310244
Q gi|255764463|r  153 ETIELISHAAVIQADAGADIIA--------PSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL  224 (337)
Q Consensus       153 ~Tl~~L~k~Al~~A~AGaDivA--------PSdMMDGrV~aIR~~Ld~~g~~~~~ImsYsaKfaS~fYgPFRdA~~S~p~  224 (337)
                      -|-+.+++++-.++..|+|+|-        |-.=+.-||.++.+++++.                             ..
T Consensus        32 Lsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a-----------------------------~~   82 (283)
T d1ykwa1          32 LSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKA-----------------------------EA   82 (283)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHH-----------------------------HH
T ss_pred             CCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHH-----------------------------HH
T ss_conf             9979999999999827776522886677988764999999999999999-----------------------------99


Q ss_pred             CCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHCCCCC
Q ss_conf             677774431572114-78898888766408987995531145899999996249989999-3461899999999888978
Q gi|255764463|r  225 LKGDKKTYYLDPANV-QEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAY-QVSGEYAMIKAASLQGWIN  302 (337)
Q Consensus       225 ~~gdr~sYQmd~~n~-~eA~~e~~~D~~EGAD~lMVKPa~~yLDii~~~k~~~~~P~~aY-qVSGEYami~~a~~~g~~d  302 (337)
                      -.|.++-|-.+.... .|-++....=.++|++.+||-|...=++.++.+++..++|+.+- +-+|-|+   -..+.|+ +
T Consensus        83 ~TG~~~lya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~a~~~l~~~~~lpi~~H~a~~g~~~---r~~~~Gi-s  158 (283)
T d1ykwa1          83 ETGEPKIYLANITDEVDSLMEKHDVAVRNGANALLINALPVGLSAVRMLSNYTQVPLIGHFPFIASFS---RMEKYGI-H  158 (283)
T ss_dssp             HHSSCCEEEEECCCCGGGHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHCSSCEEEECTTTHHHH---CSTTSEE-C
T ss_pred             HHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCEEEC---CCCCCCC-C
T ss_conf             85975488620579999999999999982998899925654189999998645877675202200112---5767874-5


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             8999999999997726999982
Q gi|255764463|r  303 KNDAMMESLLAFKRAGCDGIFT  324 (337)
Q Consensus       303 ~~~~~~E~l~~~kRAGAd~Iit  324 (337)
                      .. + +  -.-.+-||||.|++
T Consensus       159 ~~-v-l--~KL~RLaGaD~ih~  176 (283)
T d1ykwa1         159 SK-V-M--TKLQRLAGLDAVIM  176 (283)
T ss_dssp             HH-H-H--HHHHHHHTCSEEEE
T ss_pred             HH-H-H--HHHHHHCCCCCEEE
T ss_conf             89-9-9--89988707770132


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]