RPSBLAST alignment for GI: 255764463 and conserved domain: cd04823
>gnl|CDD|88599 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesium binding sequence RX~164DX~65EXXXD and are activated by magnesium and/or potassium, but not by zinc. PBGSs_aspartate_rich are found in some bacterial species and photosynthetic organisms such as vascular plants, mosses and algae, but not in archaea.. Length = 320
Score = 483 bits (1244), Expect = e-137
Identities = 184/320 (57%), Positives = 246/320 (76%), Gaps = 1/320 (0%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
R RRNR+++ +R +VRE LS DLILP+F+ GE E I SMP V R+SID +++
Sbjct: 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEA 60
Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134
++ DLGIPA+A+FP P +L++ GS +PDNL+ I AIK+ P +GIITDVALDP
Sbjct: 61 EEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDP 120
Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194
+T HGHDGI+ DG I+NDET+E++ A++QA+AGADI+APS+MMDGR+ IR+ LD+ G
Sbjct: 121 YTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDAEG 180
Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254
NV I+ Y AK+ S+FYGP+RDA+ + KGDKKTY +DPAN +EA+RE ++DI E A
Sbjct: 181 FTNVSILSYAAKYASAFYGPFRDALGSA-PRKGDKKTYQMDPANSREALREVALDIAEGA 239
Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314
DM++VKPG+PYLD+ R+K++FG+PTFAYQVSGEYAM+KAA+ GW++++ M+ESLLAF
Sbjct: 240 DMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAF 299
Query: 315 KRAGCDGIFTYFAMEAARIL 334
KRAG DGI TYFA EAA L
Sbjct: 300 KRAGADGILTYFAKEAAEWL 319