RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
(337 letters)
>gnl|CDD|181755 PRK09283, PRK09283, delta-aminolevulinic acid dehydratase;
Validated.
Length = 323
Score = 541 bits (1396), Expect = e-154
Identities = 175/321 (54%), Positives = 234/321 (72%), Gaps = 3/321 (0%)
Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73
R RR RK+ +R +VRE RL+ +DLI P+F+ GE E I SMP V R+SID+ V++
Sbjct: 5 FTRPRRLRKTAALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKE 64
Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133
++ +LGIPA+A+F +P +L++ GS +PD L+ I AIKK P +G+ITDV LD
Sbjct: 65 AEEAVELGIPAVALFG-VP-ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLD 122
Query: 134 PFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSH 193
+T HGH GIL DG + NDET+EL++ A+ QA+AGADI+APS+MMDGRV IR+ LD
Sbjct: 123 EYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEA 182
Query: 194 GHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQES 253
G +V IM Y AK+ S+FYGP+RDA + GD+KTY +DPAN +EA+RE ++DI+E
Sbjct: 183 GFTDVPIMSYSAKYASAFYGPFRDAAGSA-PQFGDRKTYQMDPANRREALREVALDIEEG 241
Query: 254 ADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLA 313
ADM++VKP LPYLD+ R+K++F LP AYQVSGEYAMIKAA+ GWI++ ++ESLL+
Sbjct: 242 ADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLS 301
Query: 314 FKRAGCDGIFTYFAMEAARIL 334
KRAG DGI TYFA +AAR L
Sbjct: 302 IKRAGADGILTYFAKDAARWL 322
>gnl|CDD|172020 PRK13384, PRK13384, delta-aminolevulinic acid dehydratase;
Provisional.
Length = 322
Score = 307 bits (789), Expect = 2e-84
Identities = 133/319 (41%), Positives = 201/319 (63%), Gaps = 4/319 (1%)
Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74
RR+RR R+S +R++VRE +S+SDLI PIF+ I+++P + R+ ++I
Sbjct: 8 RRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPESALADEI 67
Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134
+++ LGI + F I ++ GS D + L+ + IK +P + +I D+
Sbjct: 68 ERLYALGIRYVMPF-GISHH-KDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCE 125
Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194
+T HGH G+L + E+ ND T+E + +V A AGAD++APS MMDG+V+ IR+ LD+ G
Sbjct: 126 YTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAG 185
Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254
+V I+ + AKF SSFYGP+R A+ L GD+K+Y LD AN ++A+ EA +D E A
Sbjct: 186 FEHVAILAHSAKFASSFYGPFRAAVDCE--LSGDRKSYQLDYANGRQALLEALLDEAEGA 243
Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314
D+L+VKPG PYLDV R++++ LP AYQV GEYAMIK A+L G +++ + E+L
Sbjct: 244 DILMVKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGL 303
Query: 315 KRAGCDGIFTYFAMEAARI 333
KRAG D I +Y+A + A+
Sbjct: 304 KRAGADLIVSYYAKQYAQW 322
>gnl|CDD|181529 PRK08662, PRK08662, nicotinate phosphoribosyltransferase; Reviewed.
Length = 343
Score = 30.2 bits (69), Expect = 0.80
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 183 VQEIRKKLDSHGHINVGIM 201
V+E+R LD G+ +V I
Sbjct: 247 VREVRWTLDIRGYEHVKIF 265
>gnl|CDD|181021 PRK07534, PRK07534, methionine synthase I; Validated.
Length = 336
Score = 29.7 bits (67), Expect = 1.1
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 146 DGEIVNDETIELISHAAVIQADAGADIIAP-SEMMDGRVQEIRKKLDSH 193
DG I D T EL++ AV+ DAGA II M + +R LD+
Sbjct: 248 DGHIHYDGTPELMAEYAVLARDAGARIIGGCCGTMPEHLAAMRAALDAR 296
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax).
Length = 349
Score = 29.4 bits (66), Expect = 1.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 40 LILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAI---FPNIPMDLR 96
+++PI + E + +M D M +++ VA+ Q+A P + I ++PM L
Sbjct: 245 IVIPIVGNAAEHATAVLVAMKDKMDLALGVAIGSSLQIALFVAPVLVIVGWMIDVPMTLN 304
Query: 97 NNT 99
+T
Sbjct: 305 FST 307
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional.
Length = 393
Score = 29.2 bits (65), Expect = 1.4
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 129 DVALDPFT-IHGHDGILCDGEIVNDETIELI-----SHAAVIQADAG-----ADIIAPSE 177
DV D +H G + + DE LI SH V D + P
Sbjct: 269 DVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEARLRGEETSLNPLG 328
Query: 178 MMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDL 224
M++G + + D HG + P+ AK + + +R+ TRDL
Sbjct: 329 MVEGLIGAMNHAADVHGGKE-RVHPFTAKLRAVIHKLFREGRGTRDL 374
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 235 DPANVQEAIREASIDIQESADMLLVKPGLPYLDVCF 270
D + VQEAI E S D+Q D +L K +++ CF
Sbjct: 209 DESAVQEAIEEFSKDVQADEDSILNK--QSWINECF 242
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. This model is
generated from the calcium ion/proton exchangers of the
CacA family.
Length = 365
Score = 28.9 bits (65), Expect = 1.8
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 37 VSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIP---AIAIFPNIPM 93
+ ++ PI + E I + + + +++ VA+ Q+A +P +A IPM
Sbjct: 258 IGVILAPIVGNAAEHAGAVIAAFKNKLDIALGVALGSALQIALFVVPVVVLVAWMLGIPM 317
Query: 94 DL 95
DL
Sbjct: 318 DL 319
>gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase. This clade of
genes encoding iron-containing alcohol dehydrogenase
(pfam00465) proteins is generally found in apparent
operons for the catabolism of rhamnose or fucose.
Catabolism of both of these monosaccharides results in
lactaldehyde which is reduced by this enzyme to 1,2
propanediol. This protein is alternatively known by the
name 1,2 propanediol oxidoreductase. This enzyme is
active under anaerobic conditions in E. coli while being
inactivated by reactive oxygen species under aerobic
conditions. Under aerobic conditions the lactaldehyde
product of rhamnose and fucose catabolism is believed to
be oxidized to lactate by a separate enzyme,
lactaldehyde dehydrogenase.
Length = 379
Score = 28.6 bits (64), Expect = 2.6
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 20/85 (23%)
Query: 153 ETIELISHAAVIQADAGADIIAPSEMMDGR--------------VQEIRKKLDS-----H 193
+ IE+I+ + G D+ A +M G+ V + L + H
Sbjct: 218 KAIEIIARWLRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPH 277
Query: 194 GHINVGIMPYVAKFNSSFYGP-YRD 217
G N ++P+V +FN+ F G YR+
Sbjct: 278 GVANAILLPHVMEFNAEFTGEKYRE 302
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 28.2 bits (64), Expect = 3.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 258 LVKPGLPYLDVC-F---RIKEKFGLPTFAYQVS 286
L+KPG LDV F RI+E P F +S
Sbjct: 22 LIKPGAKLLDVAEFVENRIRELGAKPAFPCNIS 54
>gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional.
Length = 299
Score = 27.5 bits (61), Expect = 5.0
Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 223 DLLKGDKKTYYLDPANVQEAI--REASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPT 280
LK D Y VQE I RE ++ I E+ V LP L++ R K +F
Sbjct: 152 HALKEDLPRY--GSVIVQEYIPGREMTVSILETEKGFEV---LPILEL--RPKRRFYDYV 204
Query: 281 FAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGC------DGIF 323
Y GE I A L + +L AF AGC DGIF
Sbjct: 205 AKY-TKGETEFILPAPLNPEEERLVKET-ALKAFVEAGCRGFGRVDGIF 251
>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A;
Provisional.
Length = 155
Score = 27.5 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 300 WINKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTH 336
WIN D ++ SL F+ + D I Y EA + H
Sbjct: 70 WINIGDIILVSLRDFQDSKADVILKYTPDEARALKQH 106
>gnl|CDD|131387 TIGR02334, prpF, probable AcnD-accessory protein PrpF. The
2-methylcitrate cycle is one of at least five
degradation pathways for propionate via propionyl-CoA.
Degradation of propionate toward pyruvate consumes
oxaloacetate and releases succinate. Oxidation of
succinate back into oxaloacetate by the TCA cycle makes
the 2-methylcitrate pathway a cycle. This family
consists of PrpF, an incompletely characterized protein
that appears to be an essential accessory protein for
the Fe/S-dependent 2-methylisocitrate dehydratase AcnD
(TIGR02333). This protein is related to but distinct
from FldA (part of Pfam family pfam04303), a putative
fluorene degradation protein of Sphingomonas sp. LB126.
Length = 390
Score = 27.5 bits (61), Expect = 5.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 131 ALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQE 185
A+ F IH G++ I D I + QA+ G IIA + G+VQE
Sbjct: 107 AVGAFAIHA--GLVDPARIPEDG----ICTVRIWQANIGKTIIAHVPISGGQVQE 155
>gnl|CDD|152193 pfam11757, RSS_P20, Suppressor of RNA silencing P21-like. This is
a large family of putative suppressors of RNA silencing
proteins, P20-P25, from ssRNA positive-strand viruses
such as Closterovirus, Potyvirus and Cucumovirus
families. RNA silencing is one of the major mechanisms
of defence against viruses, and, in response, some
viruses have evolved or acquired functions for
suppression of RNA silencing. These counter-defencive
viral proteins with RNA silencing suppressor (RSS)
activity were originally discovered in the members of
plant virus genera Potyvirus and Cucumovirus. Each of
the conserved blocks of amino acids found in P21-like
proteins corresponds to a computer-predicted
alpha-helix, with the most C-terminal element being 42
residues long. This suggests conservation of the
predominantly alpha-helical secondary structure in the
P21-like proteins.
Length = 137
Score = 27.1 bits (60), Expect = 5.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 26 IREMVREHRLSVSDLILPIF 45
I ++ REH+L S+ P +
Sbjct: 115 ISDLSREHKLDFSERAFPGY 134
>gnl|CDD|184332 PRK13796, PRK13796, GTPase YqeH; Provisional.
Length = 365
Score = 27.1 bits (61), Expect = 6.1
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 18 RRNRKSNWIREMVREHRLSVSDLILPIFLTSGEK 51
++N+ NW+R+ +E L D + L S +K
Sbjct: 114 KKNKVKNWLRQEAKELGLRPVD----VVLISAQK 143
>gnl|CDD|118264 pfam09732, CactinC_cactus, Cactus-binding C-terminus of cactin
protein. CactinC_cactus is the C-terminal 200 residues
of the cactin protein which are necessary for the
association of cactin with IkappaB-cactus as one of the
intracellular members of the Rel complex. The Rel
(NF-kappaB) pathway is conserved in invertebrates and
vertebrates. In mammals, it controls the activities of
the immune and inflammatory response genes as well as
viral genes, and is critical for cell growth and
survival. In Drosophila, the Rel pathway functions in
the innate cellular and humoral immune response, in
muscle development, and in the establishment of
dorsal-ventral polarity in the early embryo. Most
members of the family also have a Cactin_mid domain
pfam10312 further upstream.
Length = 125
Score = 27.2 bits (61), Expect = 6.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 256 MLLVKPGLPYLDVCFRIKEK 275
++ G PY D+ FRI K
Sbjct: 74 LIRFHAGPPYEDIAFRIVNK 93
>gnl|CDD|178400 PLN02803, PLN02803, beta-amylase.
Length = 548
Score = 26.7 bits (59), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 296 SLQGWINKNDAMMESLLAFKRAGCDGI 322
++ G +NK AM SL+A + AG +G+
Sbjct: 98 TMGGNLNKPRAMNASLMALRSAGVEGV 124
>gnl|CDD|180894 PRK07226, PRK07226, fructose-bisphosphate aldolase; Provisional.
Length = 267
Score = 26.7 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 148 EIVNDETIELISHAAVIQADAGADII 173
I N+ E+++HAA + A+ GADI+
Sbjct: 152 GIKNEYDPEVVAHAARVAAELGADIV 177
>gnl|CDD|162842 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose
trehalohydrolase. Members of this family are the
trehalose biosynthetic enzyme malto-oligosyltrehalose
trehalohydrolase, formally known as
4-alpha-D-{(1->4)-alpha-D-glucano}trehalose
trehalohydrolase (EC 3.2.1.141). It is the TreZ protein
of the TreYZ pathway for trehalose biosynthesis, and
alternative to the OtsAB system.
Length = 542
Score = 26.5 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 68 DVAVEKIKQVADLGIPAIAIFP 89
D A+EK+ +ADLGI AI + P
Sbjct: 111 DAAIEKLPYLADLGITAIELMP 132
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,638,113
Number of extensions: 373170
Number of successful extensions: 900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 30
Length of query: 337
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 243
Effective length of database: 3,963,321
Effective search space: 963087003
Effective search space used: 963087003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)