RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] (337 letters) >1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Length = 323 Score = 423 bits (1088), Expect = e-119 Identities = 136/318 (42%), Positives = 198/318 (62%), Gaps = 4/318 (1%) Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74 +R RR RKS +R M E LS++DL+LPIF+ +++ +MP VMR+ +I Sbjct: 5 QRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREI 64 Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 +++A+ GI ++ F + TGS D L+ K+ +P + +++D Sbjct: 65 ERIANAGIRSVMTFGISHH--TDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCE 122 Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194 +T HGH G+LC+ + ND T+E + AV+ A AGAD IAPS MDG+VQ IR+ LD+ G Sbjct: 123 YTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAG 182 Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 + IM Y KF SSFYGP+R+A + LKGD+K+Y ++P N +EAIRE+ +D + A Sbjct: 183 FKDTAIMSYSTKFASSFYGPFREAAGSA--LKGDRKSYQMNPMNRREAIRESLLDEAQGA 240 Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 D L+VKP YLD+ ++E+ LP AYQVSGEYAMIK A+L G I++ ++ESL + Sbjct: 241 DCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSI 300 Query: 315 KRAGCDGIFTYFAMEAAR 332 KRAG D IF+YFA++ A Sbjct: 301 KRAGADLIFSYFALDLAE 318 >3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Length = 360 Score = 421 bits (1084), Expect = e-119 Identities = 144/323 (44%), Positives = 214/323 (66%), Gaps = 3/323 (0%) Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73 R RRNRK+ +R++V+E+ + S LI P+F+ E +V I SMP R+S++ +++ Sbjct: 24 QARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP-IPSMPGQSRLSMEDLLKE 82 Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 + + GI A +FP + +L++ +PD L+ I A+K+ P++ ++ DVALD Sbjct: 83 VGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALD 142 Query: 134 PFTIHGHDGIL--CDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLD 191 P++ GHDG++ G+IVND T+ + A+ A AGAD++ PS+MMDGRV IR+ LD Sbjct: 143 PYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLD 202 Query: 192 SHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 G + I+ Y K+ SSFYGP+RDA+ + + DKKTY +DP+N +EA REA D Sbjct: 203 MEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAEADAS 262 Query: 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESL 311 E ADML+VKPGLPYLDV +I+EK LP AY VSGEYAM+KAA+ +G+I++ D ++E L Sbjct: 263 EGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVL 322 Query: 312 LAFKRAGCDGIFTYFAMEAARIL 334 +F+RAG D + TY+A EAA+ + Sbjct: 323 KSFRRAGADAVATYYAKEAAKWM 345 >1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reaction intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Length = 330 Score = 406 bits (1044), Expect = e-114 Identities = 113/324 (34%), Positives = 177/324 (54%), Gaps = 5/324 (1%) Query: 15 RRMRRNRKSNWIREM-VREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73 + +R L+ S+LI PIF+T ++ I S+P V R + E Sbjct: 5 SVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEM 64 Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 ++ + + G+ + IF ++ GS ++ E I ++K PN+ + DV L Sbjct: 65 LRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLC 124 Query: 134 PFTIHGHDGILCDGEIV-NDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192 P+T HGH G+L + +E+ + ++ A+ A AG ++APS+MMDGRV+ I++ L + Sbjct: 125 PYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMA 184 Query: 193 HGHIN-VGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 HG N V +M Y AKF S FYGP+RDA + GD++ Y L P A+R D++ Sbjct: 185 HGLGNRVSVMSYSAKFASCFYGPFRDAAKSS-PAFGDRRCYQLPPGARGLALRAVDRDVR 243 Query: 252 ESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310 E ADML+VKPG+PYLD+ +K+K LP Y VSGE+AM+ + G + A++E+ Sbjct: 244 EGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEA 303 Query: 311 LLAFKRAGCDGIFTYFAMEAARIL 334 + AF+RAG D I TY+ + + L Sbjct: 304 MTAFRRAGADIIITYYTPQLLQWL 327 >1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Length = 342 Score = 404 bits (1040), Expect = e-113 Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 5/324 (1%) Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74 + +R+ E +L+ + LI P+F++ I+S+P++ R+ ++ + + Sbjct: 16 SVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYL 75 Query: 75 KQVADLGIPAIAIFPN-IPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 K + G+ ++ +F + ++ G+ DP + +GI I++ P + II DV L Sbjct: 76 KPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLC 135 Query: 134 PFTIHGHDGILCDGEIVND-ETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192 +T HGH G+L D +N ++ ++ AV A AGA +APS+M+DGR+++I++ L + Sbjct: 136 EYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLIN 195 Query: 193 -HGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 + ++ Y AKF+ + YGP+RDA + GD+K Y L PA A R D+ Sbjct: 196 ANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPS-NGDRKCYQLPPAGRGLARRALERDMS 254 Query: 252 ESADMLLVKPGLPYLDVCFRIKEKF-GLPTFAYQVSGEYAMIKAASLQGWINKNDAMMES 310 E AD ++VKP YLD+ E LP AY VSGEYAM+ AA+ +G ++ ES Sbjct: 255 EGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFES 314 Query: 311 LLAFKRAGCDGIFTYFAMEAARIL 334 F RAG I TY A E L Sbjct: 315 HQGFLRAGARLIITYLAPEFLDWL 338 >1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Length = 337 Score = 359 bits (923), Expect = e-100 Identities = 155/323 (47%), Positives = 223/323 (69%), Gaps = 3/323 (0%) Query: 14 HRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEK 73 + R+RRNR+ ++ R +VRE+ L+V DLILP+F+ G ESI SMP V R+SID + + Sbjct: 12 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIE 71 Query: 74 IKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALD 133 ++ LGIPA+A+FP P++ ++ + +P+ + A+++ P +GIITDV L Sbjct: 72 AEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLC 131 Query: 134 PFTIHGHDGILC-DGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDS 192 FT HG GIL DG ++ND +I+++ A+ A+AGA ++APS+MMDGR+ IR+ L+S Sbjct: 132 EFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALES 191 Query: 193 HGHINVGIMPYVAKFNSSFYGPYRDAI-STRDLLKGDKKTYYLDPANVQEAIREASIDIQ 251 GH NV +M Y AK+ S++YGP+RDA+ S +L KG++ TY +DPAN EA+ E + D+ Sbjct: 192 AGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEVAADLA 251 Query: 252 ESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESL 311 E ADM++VKPG+PYLD+ R+K++F PTF YQVSGEYAM A GW+ + ++ESL Sbjct: 252 EGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SVILESL 310 Query: 312 LAFKRAGCDGIFTYFAMEAARIL 334 AFKRAG DGI TYFA +AA L Sbjct: 311 TAFKRAGADGILTYFAKQAAEQL 333 >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Length = 328 Score = 346 bits (889), Expect = 4e-96 Identities = 159/320 (49%), Positives = 226/320 (70%), Gaps = 3/320 (0%) Query: 15 RRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKI 74 R RR R++ +R +V+E+ L+V+DL+ P+F+ G VE ++SMP R +ID AVE+ Sbjct: 11 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEEC 70 Query: 75 KQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDP 134 K++ DLGI I +F + + GS + + ++ + I AIKK +P + I+TDVALDP Sbjct: 71 KELYDLGIQGIDLFG--IPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDP 128 Query: 135 FTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHG 194 FT GHDG++ DG I+NDET+E++ AV A+AGAD ++PS+MMDGR+ IR+ LD Sbjct: 129 FTPFGHDGLVKDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETD 188 Query: 195 HINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESA 254 H +VGI+ Y AK+ SSFYGP+RDA+ + GDK TY ++PAN +EA++E +DI E A Sbjct: 189 HSDVGILSYAAKYASSFYGPFRDALHSAPQ-FGDKSTYQMNPANTEEAMKEVELDIVEGA 247 Query: 255 DMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAF 314 D+++VKPGL YLD+ +R KE+F +P Y VSGEYAM+KAA+ +GWI+++ MMESLL Sbjct: 248 DIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCM 307 Query: 315 KRAGCDGIFTYFAMEAARIL 334 KRAG D IFTY+A EAA+ L Sbjct: 308 KRAGADIIFTYYAKEAAKKL 327 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.2 bits (91), Expect = 0.001 Identities = 58/312 (18%), Positives = 87/312 (27%), Gaps = 152/312 (48%) Query: 35 LSVSDLILPIFLTSGEKTVESINS-MPDVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPM 93 LS+S+L + + V NS +P KQV I+ Sbjct: 339 LSISNLTQE-QV---QDYVNKTNSHLPA------G------KQV------EIS------- 369 Query: 94 DLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFTIHGHDGILCDGEIVNDE 153 L N NL+ V+ P +++G Sbjct: 370 -LVNG-------AKNLV-------------------VSGPPQSLYG-------------- 388 Query: 154 TIELISHAAVIQADAGAD---IIAP-SEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNS 209 L +A +G D I P SE RK S+ +P + F+S Sbjct: 389 ---LNLTLRKAKAPSGLDQSRI--PFSE---------RKLKFSN-----RFLPVASPFHS 429 Query: 210 SFYGPY-RDAISTRDLLKGD--KKTYYLDPANVQ---------EAIREASIDIQESA-DM 256 A DL+ D K + ++Q +R S I E D Sbjct: 430 ----HLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482 Query: 257 LLVKP-------GLPY---LDVCF-------------RIKEKFGLPTFAYQVSGEYAMIK 293 ++ P LD F R K+ G+ +V I Sbjct: 483 IIRLPVKWETTTQFKATHILD--FGPGGASGLGVLTHRNKDGTGV-----RV------IV 529 Query: 294 AASLQGWINKND 305 A +L IN +D Sbjct: 530 AGTLD--INPDD 539 Score = 36.8 bits (85), Expect = 0.006 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 42/130 (32%) Query: 27 REMVREH------RLSVSDLILPIFLT-SGE---KTVESINSMPDVMRMSIDVAVEKIKQ 76 +++ + + D+ +P++ T G SI ++ + +K Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI--SERIVDC---IIRLPVKW 490 Query: 77 VADLGIPAIAIFPNIPMDLRNNTGSHIID--PDNLINEGICAI-KKNIPNIG--IITDVA 131 A +HI+D P G+ + +N G +I Sbjct: 491 ETTTQFKA----------------THILDFGPGGA--SGLGVLTHRNKDGTGVRVIVAGT 532 Query: 132 LDPFTIHGHD 141 LD D Sbjct: 533 LDI----NPD 538 Score = 33.4 bits (76), Expect = 0.080 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 60/159 (37%) Query: 185 EIRKKLD-SHGHINVGIMPYVAKFNS------SFYGPYRDA------ISTRDLLKGDKKT 231 E+R L + GH + G++ A + SF+ R A I R Sbjct: 262 ELRSYLKGATGH-SQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE-----A 313 Query: 232 Y---YLDPANVQEAIREASIDIQESAD--MLLVKPGLP------YLDVCFRIKEKFGLPT 280 Y L P+ +++ S++ E ML + L Y++ LP Sbjct: 314 YPNTSLPPSILED-----SLENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSH-----LP- 361 Query: 281 FAYQVSGEYAMIKAASLQGWINKNDAMM-----ESLLAF 314 + SL +N ++ +SL Sbjct: 362 -------AGKQV-EISL---VNGAKNLVVSGPPQSLYGL 389 Score = 32.2 bits (73), Expect = 0.15 Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 57/211 (27%) Query: 127 ITDVALD-P--FTIH--GHDG-------------ILCDGEIVNDETI-ELISHAA--VIQ 165 I D+ ++ P TIH G G + DG++ ++ E+ H+ + Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720 Query: 166 ADAG----ADIIAPS-EMMD-GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAI 219 ++ G P+ +M+ ++++ K G++P A F G Y Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSK---------GLIPADATFAGHSLGEYAALA 1771 Query: 220 STRDLLKGDK--KTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFG 277 S D++ + + + +Q A+ + + + M+ + PG R+ F Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELG-RSNYGMIAINPG--------RVAASFS 1822 Query: 278 LPTFAYQVSGEYAMIKAASLQGW----INKN 304 Q + +Y + + GW +N N Sbjct: 1823 ------QEALQYVVERVGKRTGWLVEIVNYN 1847 Score = 31.5 bits (71), Expect = 0.27 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 68/183 (37%) Query: 148 EIVNDETIELISH-----AAVIQADAGADIIAPSEMMDGRV--QEIRKKLDSHGHINVGI 200 +IV + + L H I+ + A I ++DG++ ++I K+++ H Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIF--ETIVDGKLKTEKIFKEINEH------- 1713 Query: 201 MPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVK 260 S+ Y +R S + LL T + PA + + E A Sbjct: 1714 --------STSY-TFR---SEKGLLSA---TQFTQPA----------LTLMEKA------ 1742 Query: 261 PGLPYLDVCFRIKEKFGLP---TFAYQVSGEYAMIKAASLQGWINKNDAM-MESL--LAF 314 + D +K K +P TFA GEYA + ASL D M +ESL + F Sbjct: 1743 ---AFED----LKSKGLIPADATFAGHSLGEYAAL--ASLA------DVMSIESLVEVVF 1787 Query: 315 KRA 317 R Sbjct: 1788 YRG 1790 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 33.1 bits (74), Expect = 0.086 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 4/22 (18%) Query: 70 AVEKI----KQVADLGIPAIAI 87 A++K+ K AD PA+AI Sbjct: 21 ALKKLQASLKLYADDSAPALAI 42 >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} Length = 307 Score = 29.9 bits (67), Expect = 0.77 Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 146 DGEIVNDETIELISHAAVIQADAGADII 173 +G++VND + + + + I A G D Sbjct: 190 NGKVVNDLSTDAVIQSVAIAAGLGNDSS 217 >3hyn_A Putative signal transduction protein; YP_002936568.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Eubacterium rectale atcc 33656} Length = 189 Score = 28.8 bits (64), Expect = 1.6 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 27/122 (22%) Query: 20 NRKSNW---IREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQ 76 S+W ++ + RL S I+ L T S +R ++ + Sbjct: 60 RDGSDWEKTLKPRLHT-RLDNSKNII---LFLSSITANS-----RALREEMNYGIGT--- 107 Query: 77 VADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNIGIITDVALDPFT 136 G+P I I+P+ D + IK + D T Sbjct: 108 ---KGLPVIVIYPD---------YDKKSDIVDSNGNFKKQIKDLWDKLPAFRDNMSSVAT 155 Query: 137 IH 138 +H Sbjct: 156 LH 157 >1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 Score = 27.8 bits (60), Expect = 3.5 Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 17/167 (10%) Query: 171 DIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKK 230 D + ++ I+ +L+ + + ++ +A + + + S + Sbjct: 203 DKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMF 262 Query: 231 TYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDVCFRIKE---KFGLPTFAYQVSG 287 P +++ A I ML+ + P + + + L Y V Sbjct: 263 K----PGAMKQVAEYADG-IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRS 317 Query: 288 EYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 + D + +AG +G+FT F +A + L Sbjct: 318 DKLPEYTP---------DVNQLYDALYNKAGVNGLFTDFPDKAVKFL 355 >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 Score = 27.0 bits (59), Expect = 6.0 Identities = 10/116 (8%), Positives = 26/116 (22%), Gaps = 13/116 (11%) Query: 209 SSFYGPYRDAISTRDLLKGDKKTYYLDPANVQEAIREASIDIQESADMLLVKPGLPYLDV 268 + A + ++ + + I + K +V Sbjct: 163 TVHD--GASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPEVREV 220 Query: 269 CFRIKEKFGLPTFAYQVSGEYAMIKAASLQGWINKNDAMMESLLAFKRAGCDGIFT 324 + E+ G+ + + ++ R G D I + Sbjct: 221 IDMLHER-GVMCMISTAPSDDKLS-------TPESRAEAYRMII---RQGVDIIES 265 >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Score = 26.7 bits (58), Expect = 7.0 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 168 AGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTR---DL 224 AG++ I S+++ R++E + S + I ++ + P+R++ T Sbjct: 246 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 305 Query: 225 LKGDKKTY 232 L GD KT Sbjct: 306 LTGDSKTL 313 >2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A Length = 365 Score = 26.6 bits (59), Expect = 7.5 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 16/67 (23%) Query: 21 RKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADL 80 R++ W +E+ + LSV+D I+ V S + D + I V +Q DL Sbjct: 65 RQARWKKEI--DWLLSVTDHIVEF--------VPSQQTSKDGVCTEIMVT----RQRGDL 110 Query: 81 --GIPAI 85 IPA+ Sbjct: 111 LMNIPAL 117 >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Length = 278 Score = 26.6 bits (58), Expect = 8.1 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 9/67 (13%) Query: 26 IREMVREHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAI 85 + E + H + L +F + + I ++ LG+ + Sbjct: 51 LAEYFQTHHIKPLALNALVFFNNRD---------EKGHNEIITEFKGMMETCKTLGVKYV 101 Query: 86 AIFPNIP 92 P + Sbjct: 102 VAVPLVT 108 >3i10_A Putative glycerophosphoryl diester phosphodiesterase; NP_812074.1, structural genomics; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 Score = 26.5 bits (57), Expect = 8.4 Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 2/35 (5%) Query: 300 WINKNDAMMESLLAFKRAGCDGIFTYFAMEAARIL 334 + + L+ ++ G + T L Sbjct: 239 ALTDPEKSYGYLI--EQLGARILQTDQPAYLLDYL 271 >2xuc_A Chitinase, chitinase A1; hydrolase, aspergillosis; 2.30A {Aspergillus fumigatus} Length = 310 Score = 26.4 bits (57), Expect = 9.5 Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 3/61 (4%) Query: 65 MSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKNIPNI 124 + D V +K ++ +P + + PD + + + + Sbjct: 223 FNFDAWVTVLKAS---ASKDAKLYVGLPASETAANQGYYLTPDEVESLVSTYMDRYPDTF 279 Query: 125 G 125 G Sbjct: 280 G 280 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0554 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,032,666 Number of extensions: 145430 Number of successful extensions: 644 Number of sequences better than 10.0: 1 Number of HSP's gapped: 624 Number of HSP's successfully gapped: 35 Length of query: 337 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 244 Effective length of database: 3,438,538 Effective search space: 839003272 Effective search space used: 839003272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.1 bits)