BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
         (337 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 337

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/337 (100%), Positives = 337/337 (100%)

Query: 1   MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP 60
           MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP
Sbjct: 1   MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP 60

Query: 61  DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN 120
           DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN
Sbjct: 61  DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN 120

Query: 121 IPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD 180
           IPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD
Sbjct: 121 IPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD 180

Query: 181 GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ 240
           GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ
Sbjct: 181 GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ 240

Query: 241 EAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW 300
           EAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW
Sbjct: 241 EAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW 300

Query: 301 INKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS 337
           INKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS
Sbjct: 301 INKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS 337


>gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 600

 Score = 26.2 bits (56), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 7/39 (17%)

Query: 249 DIQESADMLLVK-----PGLPYLDVCFRIKEKFGLPTFA 282
           DIQ+ A +++V+     PG+  L +  R+KEKFG P+FA
Sbjct: 364 DIQQ-ASVIVVEGDRWHPGIVGL-LAARLKEKFGRPSFA 400


>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 805

 Score = 25.4 bits (54), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 11  ICCHRRMRRNRKSNWIREMVREHRL-SVSDLI 41
           +CC + +R N   NW+R+ ++   L S+S L+
Sbjct: 219 MCCVKGVRNNVAPNWMRQRLKAVGLRSISALV 250


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score = 25.0 bits (53), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 194 GHINVGIMPYVAKFNSSFYGPYRDAIS-TRDLLKGDKKTY 232
           GH+N GI+P V      +  P   +I  T + LK +KK+Y
Sbjct: 340 GHVNYGIIPSVV-----YTHPEVASIGKTEEQLKCEKKSY 374


>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
          Length = 551

 Score = 23.9 bits (50), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 174 APSEMMDGRVQEIRKKLD 191
            PSE ++GR+ EI+K ++
Sbjct: 337 GPSERIEGRINEIQKAIE 354


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,978
Number of Sequences: 1233
Number of extensions: 9580
Number of successful extensions: 28
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 9
length of query: 337
length of database: 328,796
effective HSP length: 74
effective length of query: 263
effective length of database: 237,554
effective search space: 62476702
effective search space used: 62476702
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)