BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] (337 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP 60 MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP Sbjct: 1 MCNTNAISHKICCHRRMRRNRKSNWIREMVREHRLSVSDLILPIFLTSGEKTVESINSMP 60 Query: 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN 120 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN Sbjct: 61 DVMRMSIDVAVEKIKQVADLGIPAIAIFPNIPMDLRNNTGSHIIDPDNLINEGICAIKKN 120 Query: 121 IPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD 180 IPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD Sbjct: 121 IPNIGIITDVALDPFTIHGHDGILCDGEIVNDETIELISHAAVIQADAGADIIAPSEMMD 180 Query: 181 GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ 240 GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ Sbjct: 181 GRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRDAISTRDLLKGDKKTYYLDPANVQ 240 Query: 241 EAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW 300 EAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW Sbjct: 241 EAIREASIDIQESADMLLVKPGLPYLDVCFRIKEKFGLPTFAYQVSGEYAMIKAASLQGW 300 Query: 301 INKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS 337 INKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS Sbjct: 301 INKNDAMMESLLAFKRAGCDGIFTYFAMEAARILTHS 337 >gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 600 Score = 26.2 bits (56), Expect = 0.86, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 7/39 (17%) Query: 249 DIQESADMLLVK-----PGLPYLDVCFRIKEKFGLPTFA 282 DIQ+ A +++V+ PG+ L + R+KEKFG P+FA Sbjct: 364 DIQQ-ASVIVVEGDRWHPGIVGL-LAARLKEKFGRPSFA 400 >gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 11 ICCHRRMRRNRKSNWIREMVREHRL-SVSDLI 41 +CC + +R N NW+R+ ++ L S+S L+ Sbjct: 219 MCCVKGVRNNVAPNWMRQRLKAVGLRSISALV 250 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%) Query: 194 GHINVGIMPYVAKFNSSFYGPYRDAIS-TRDLLKGDKKTY 232 GH+N GI+P V + P +I T + LK +KK+Y Sbjct: 340 GHVNYGIIPSVV-----YTHPEVASIGKTEEQLKCEKKSY 374 >gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] Length = 551 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 14/18 (77%) Query: 174 APSEMMDGRVQEIRKKLD 191 PSE ++GR+ EI+K ++ Sbjct: 337 GPSERIEGRINEIQKAIE 354 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.138 0.406 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 218,978 Number of Sequences: 1233 Number of extensions: 9580 Number of successful extensions: 28 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 9 length of query: 337 length of database: 328,796 effective HSP length: 74 effective length of query: 263 effective length of database: 237,554 effective search space: 62476702 effective search space used: 62476702 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)