HHsearch alignment for GI: 255764464 and conserved domain: TIGR00326

>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00  E-value=8e-33  Score=218.13  Aligned_cols=134  Identities=28%  Similarity=0.388  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHH--HHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC----------------
Q ss_conf             99999999988--75799808999983-890999873473544886425113445666641488----------------
Q gi|255764464|r    8 MSCALEEAQNA--ALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQ----------------   68 (149)
Q Consensus         8 M~~A~~~A~~a--~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~----------------   68 (149)
T Consensus         1 M~~AL~lA~k~~g~T~PNP~VGcViv~~ng~IVG~G~H~--kaG~~--HAE~~Al~~AG~~aRPeisLPkeanaLhefiC   76 (393)
T TIGR00326         1 MKRALDLAKKGQGTTHPNPLVGCVIVKKNGEIVGEGFHQ--KAGEP--HAEIHALRQAGENARPEISLPKEANALHEFIC   76 (393)
T ss_pred             CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCC--CCCCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             935676664043100579860048983387587524669--77887--08999999976636886568513567888765


Q ss_pred             ----CCCCCEEEEECCCCCHH------HHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf             ----54541168861677688------98999860888599971179885017413444316899998799282189999
Q gi|255764464|r   69 ----EILPEVDLYVTLEPCTM------CAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSR  138 (149)
Q Consensus        69 ----~~l~~~tlYtTlEPC~M------C~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~  138 (149)
T Consensus        77 knhqGvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplvaGkG~~~L~~aG----IeV~~~~l~~~a~  152 (393)
T TIGR00326        77 KNHQGVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGKGIERLKQAG----IEVTFGILKEEAE  152 (393)
T ss_pred             HCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCC----CEEEECHHHHHHH
T ss_conf             226741207767981576688888715689997386148988865087222341479998669----7254401589864


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99899988409
Q gi|255764464|r  139 QIIQDFFKERR  149 (149)
Q Consensus       139 ~Ll~~ff~~kR  149 (149)
T Consensus       153 ~lnk~Fl~~~~  163 (393)
T TIGR00326       153 KLNKGFLKRMR  163 (393)
T ss_pred             HCCHHHHHHHC
T ss_conf             00056788860