HHsearch alignment for GI: 255764464 and conserved domain: TIGR00326
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=8e-33 Score=218.13 Aligned_cols=134 Identities=28% Similarity=0.388 Sum_probs=120.1
Q ss_pred HHHHHHHHHHH--HHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC----------------
Q ss_conf 99999999988--75799808999983-890999873473544886425113445666641488----------------
Q gi|255764464|r 8 MSCALEEAQNA--ALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQ---------------- 68 (149)
Q Consensus 8 M~~A~~~A~~a--~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~---------------- 68 (149)
T Consensus 1 M~~AL~lA~k~~g~T~PNP~VGcViv~~ng~IVG~G~H~--kaG~~--HAE~~Al~~AG~~aRPeisLPkeanaLhefiC 76 (393)
T TIGR00326 1 MKRALDLAKKGQGTTHPNPLVGCVIVKKNGEIVGEGFHQ--KAGEP--HAEIHALRQAGENARPEISLPKEANALHEFIC 76 (393)
T ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCC--CCCCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 935676664043100579860048983387587524669--77887--08999999976636886568513567888765
Q ss_pred ----CCCCCEEEEECCCCCHH------HHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf ----54541168861677688------98999860888599971179885017413444316899998799282189999
Q gi|255764464|r 69 ----EILPEVDLYVTLEPCTM------CAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSR 138 (149)
Q Consensus 69 ----~~l~~~tlYtTlEPC~M------C~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~ 138 (149)
T Consensus 77 knhqGvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplvaGkG~~~L~~aG----IeV~~~~l~~~a~ 152 (393)
T TIGR00326 77 KNHQGVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGKGIERLKQAG----IEVTFGILKEEAE 152 (393)
T ss_pred HCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCC----CEEEECHHHHHHH
T ss_conf 226741207767981576688888715689997386148988865087222341479998669----7254401589864
Q ss_pred HHHHHHHHHHC
Q ss_conf 99899988409
Q gi|255764464|r 139 QIIQDFFKERR 149 (149)
Q Consensus 139 ~Ll~~ff~~kR 149 (149)
T Consensus 153 ~lnk~Fl~~~~ 163 (393)
T TIGR00326 153 KLNKGFLKRMR 163 (393)
T ss_pred HCCHHHHHHHC
T ss_conf 00056788860