HHsearch alignment for GI: 255764464 and conserved domain: cd00786
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.90 E-value=4.2e-24 Score=165.69 Aligned_cols=92 Identities=26% Similarity=0.254 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEEE--ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf 99999999988757-9980899998--38909998734735448864251134456666414885454116886167768
Q gi|255764464|r 8 MSCALEEAQNAALR-NEIPVGAVAV--LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCT 84 (149)
Q Consensus 8 M~~A~~~A~~a~~~-g~~PvGaviv--~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~ 84 (149)
T Consensus 1 m~~A~~~a~~ay~p~s~~pVGa~iv~~~~~~ii~~G~N~en~~~~~t~hAE~~Ai~~a~~~~---~~~~~tlyvtl~PC~ 77 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEG---DTKGQMLYVALSPCG 77 (96)
T ss_pred CHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHCC---CCCCEECEEECCCHH
T ss_conf 97999999965698889988999998779979977646178667973379999999975225---876110787229919
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 898999860888599971
Q gi|255764464|r 85 MCAAAISLARIRRLYYGA 102 (149)
Q Consensus 85 MC~~Ai~~agI~rVvyg~ 102 (149)
T Consensus 78 ~C~q~I~e~gik~vvi~~ 95 (96)
T cd00786 78 ACAQLIIELGIKDVIVVL 95 (96)
T ss_pred HHHHHHHHHCCCCEEEEE
T ss_conf 999999998899689996