HHsearch alignment for GI: 255764464 and conserved domain: cd01283
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=98.26 E-value=9.2e-06 Score=55.53 Aligned_cols=95 Identities=26% Similarity=0.238 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHCC-CCCEEEEEEEC-CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-----CC
Q ss_conf 99999999887579-98089999838-9099987347354488642511344566664148854541168861-----67
Q gi|255764464|r 9 SCALEEAQNAALRN-EIPVGAVAVLN-NKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT-----LE 81 (149)
Q Consensus 9 ~~A~~~A~~a~~~g-~~PvGaviv~~-g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT-----lE 81 (149)
T Consensus 2 ~~a~~~~~~ay~pyS~f~Vga~~~~~~G~i-~~G~nvEna~~~~~~cAEr~ai~~~~~~g~~~--~~~~~~~~~~~~~~s 78 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRI-FTGVNVENASYGLTLCAERTAIGKAVSEGLRR--YLVTWAVSDEGGVWS 78 (112)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEEECCCCE-EEEEEEECCCCCCCEEHHHHHHHHHHHCCCCC--EEEEEEEECCCCCCC
T ss_conf 779999846768867991209999389989-99898706778875118899999999828985--499999938997568
Q ss_pred CCHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 7688989998608885999711798
Q gi|255764464|r 82 PCTMCAAAISLARIRRLYYGASNPK 106 (149)
Q Consensus 82 PC~MC~~Ai~~agI~rVvyg~~d~~ 106 (149)
T Consensus 79 PCG~CrQ~l~Ef~~~~~~i~~~~~~ 103 (112)
T cd01283 79 PCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred CCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 7346899999867899689999799