Query         gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 149
No_of_seqs    109 out of 4406
Neff          6.6 
Searched_HMMs 39220
Date          Sun May 29 15:26:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764464.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10860 tRNA-specific adenosi 100.0       0       0  357.6  17.0  147    3-149    18-164 (178)
  2 COG0590 CumB Cytosine/adenosin 100.0       0       0  310.7  15.1  147    1-147     5-152 (152)
  3 cd01285 nucleoside_deaminase N 100.0   3E-37 7.8E-42  244.7  11.2  107    8-114     1-108 (109)
  4 PRK10786 ribD bifunctional dia 100.0 1.8E-34 4.7E-39  228.0  14.5  132    3-147     2-141 (367)
  5 KOG1018 consensus              100.0 2.9E-34 7.3E-39  226.8  11.9  146    2-147     9-161 (169)
  6 pfam00383 dCMP_cyt_deam_1 Cyti 100.0 6.2E-33 1.6E-37  218.8  10.4  102    1-102     1-104 (104)
  7 TIGR00326 eubact_ribD riboflav 100.0   8E-33   2E-37  218.1  10.9  134    8-149     1-163 (393)
  8 COG0117 RibD Pyrimidine deamin 100.0 1.8E-30 4.6E-35  204.0  14.1  134    3-149     5-146 (146)
  9 cd01284 Riboflavin_deaminase-r 100.0 4.8E-29 1.2E-33  195.4   9.7  105    8-120     1-114 (115)
 10 cd01286 deoxycytidylate_deamin  99.9 2.2E-25 5.6E-30  173.4  10.7  100    4-106     1-121 (131)
 11 cd00786 cytidine_deaminase-lik  99.9 4.2E-24 1.1E-28  165.7   8.0   92    8-102     1-95  (96)
 12 KOG2771 consensus               99.8 1.8E-21 4.6E-26  149.9   6.6  134    3-139   166-339 (344)
 13 COG2131 ComEB Deoxycytidylate   99.8 5.7E-20 1.5E-24  140.9   9.8  116    3-121     8-145 (164)
 14 KOG3127 consensus               99.6 2.9E-15 7.4E-20  112.6   7.9   98    2-104    65-183 (230)
 15 TIGR02571 ComEB ComE operon pr  99.3 3.7E-12 9.4E-17   94.0   5.8  101    1-104     3-118 (151)
 16 cd01283 cytidine_deaminase Cyt  98.3 9.2E-06 2.3E-10   55.5   9.1   95    9-106     2-103 (112)
 17 PRK12411 cytidine deaminase; P  98.0 9.8E-05 2.5E-09   49.3  10.8   98    1-101     1-106 (132)
 18 COG0295 Cdd Cytidine deaminase  97.8 0.00021 5.2E-09   47.4   8.3   93    8-102     9-108 (134)
 19 PRK05578 cytidine deaminase; V  97.7  0.0008   2E-08   43.9  10.9   91    1-94      1-97  (132)
 20 TIGR01354 cyt_deam_tetra cytid  97.6 0.00029 7.3E-09   46.5   6.9   90    6-95      2-102 (135)
 21 PRK06848 hypothetical protein;  97.4  0.0038 9.8E-08   39.8  10.5   96    3-100     6-115 (139)
 22 PRK08298 cytidine deaminase; V  97.3  0.0061 1.6E-07   38.6  10.8  101    1-104     1-111 (128)
 23 KOG0833 consensus               95.6    0.15 3.8E-06   30.2   9.0   90   10-100    23-122 (173)
 24 PRK09027 cytidine deaminase; P  94.6    0.29 7.5E-06   28.5   8.0   67   23-93     70-139 (295)
 25 pfam08210 APOBEC_N APOBEC-like  93.2    0.14 3.5E-06   30.4   4.2   56   36-92     40-97  (116)
 26 TIGR01355 cyt_deam_dimer cytid  86.4     2.3 5.8E-05   23.1   5.6   68   23-92     42-118 (311)
 27 PRK04388 disulfide bond format  71.9     1.5 3.9E-05   24.2   0.8   12   77-88     32-43  (172)
 28 smart00552 ADEAMc tRNA-specifi  71.4     9.2 0.00024   19.5   5.1   37   52-88     71-132 (374)
 29 PRK01749 disulfide bond format  68.5       2 5.1E-05   23.5   0.8   12   77-88     35-46  (175)
 30 pfam08211 dCMP_cyt_deam_2 Cyti  66.4      12  0.0003   18.8   5.3   60    4-64     33-94  (124)
 31 PRK02110 disulfide bond format  62.3       3 7.7E-05   22.4   0.7   11   78-88     36-46  (169)
 32 TIGR00707 argD acetylornithine  51.8     2.5 6.3E-05   22.9  -1.1   31   22-52    260-292 (402)
 33 pfam02137 A_deamin Adenosine-d  50.3      13 0.00034   18.5   2.4   34   52-85     24-82  (325)
 34 COG4827 Predicted transporter   43.1      20  0.0005   17.5   2.4   26   68-93     99-124 (239)
 35 TIGR01885 Orn_aminotrans ornit  41.5      17 0.00044   17.8   1.9   37   17-53    274-314 (426)
 36 TIGR02373 photo_yellow photoac  41.0     8.3 0.00021   19.7   0.2   29   14-44     16-46  (126)
 37 cd06222 RnaseH RNase H (RNase   40.9      31  0.0008   16.3   4.7   55   25-81     16-71  (130)
 38 pfam02600 DsbB Disulfide bond   38.6      12 0.00031   18.7   0.7   11   78-88     32-42  (159)
 39 KOG1774 consensus               37.3      24 0.00061   17.0   2.1   35    5-39     47-83  (88)
 40 pfam09930 DUF2162 Predicted tr  31.7      32 0.00082   16.2   2.0   25   69-93     94-118 (228)
 41 cd01719 Sm_G The eukaryotic Sm  31.1     7.3 0.00019   20.1  -1.4   36    5-40     31-67  (72)
 42 KOG1783 consensus               30.3      47  0.0012   15.2   4.3   35    5-40     37-73  (77)
 43 cd06908 M14_AGBL4_like Peptida  29.5      40   0.001   15.6   2.2   29   38-66    108-136 (261)
 44 PRK13907 rnhA ribonuclease H;   29.3      49  0.0012   15.1   4.5   57   19-78      9-68  (128)
 45 KOG2777 consensus               28.5      50  0.0013   15.0   3.4   33   52-84    243-300 (542)
 46 COG1624 Uncharacterized conser  28.4      49  0.0013   15.1   2.5   23    8-32    114-136 (247)
 47 cd04673 Nudix_Hydrolase_15 Mem  28.1      51  0.0013   15.0   2.5   18   25-42      2-19  (122)
 48 COG1495 DsbB Disulfide bond fo  28.0      24  0.0006   17.0   0.8   10   79-88     38-47  (170)
 49 KOG1228 consensus               27.3      30 0.00078   16.3   1.2   15   71-85     73-87  (256)
 50 KOG1682 consensus               24.7      59  0.0015   14.6   2.8   49    8-57     60-111 (287)
 51 TIGR01407 dinG_rel DnaQ family  24.3      60  0.0015   14.6   3.2   69   25-107    22-91  (944)
 52 pfam05988 DUF899 Bacterial pro  23.8      23 0.00057   17.1   0.0   14   80-93     82-95  (211)
 53 PRK10811 rne ribonuclease E; R  23.7      19 0.00049   17.6  -0.4   17   72-88    393-409 (1063)
 54 COG0353 RecR Recombinational D  23.4      29 0.00073   16.5   0.5   29   58-88     46-74  (198)
 55 pfam01235 Na_Ala_symp Sodium:a  21.5      61  0.0016   14.5   1.8   18  132-149   386-403 (415)
 56 KOG3752 consensus               21.2      49  0.0012   15.1   1.3   31   53-83    258-288 (371)
 57 KOG1427 consensus               20.8      71  0.0018   14.1   2.4   27   30-56    125-151 (443)
 58 TIGR02661 MauD methylamine deh  20.1      55  0.0014   14.8   1.4   63   19-89     30-92  (189)

No 1  
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00  E-value=0  Score=357.59  Aligned_cols=147  Identities=39%  Similarity=0.570  Sum_probs=144.6

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             56999999999999887579980899998389099987347354488642511344566664148854541168861677
Q gi|255764464|r    3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEP   82 (149)
Q Consensus         3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEP   82 (149)
                      +|++||++||++|++|+..||+|||||||++|+||++|+|+++...|||+|||++||++|++.+++++|.+|||||||||
T Consensus        18 ~de~fM~~Al~~A~~a~~~gevPVGaVIV~~g~IIa~g~N~~~~~~dpt~HAEi~Ai~~A~~~~~~~~L~~~tLYVTLEP   97 (178)
T PRK10860         18 SHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEP   97 (178)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf             99999999999999862179998899999899999997544336789986799999999999958976678479965487


Q ss_pred             CHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             6889899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r   83 CTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR  149 (149)
Q Consensus        83 C~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR  149 (149)
                      |+||++||+|+||+|||||+.||+.|++++..+++..+.+||+++|++|||++||.+||++||+++|
T Consensus        98 C~MCa~Ai~~arI~rVv~ga~Dpk~g~~gs~~~~l~~~~~nh~ieV~~Gvle~E~~~Ll~~FF~~~R  164 (178)
T PRK10860         98 CVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRR  164 (178)
T ss_pred             CHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             6889999999097989996378999976538889755698999489848589999999999999997


No 2  
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=310.68  Aligned_cols=147  Identities=46%  Similarity=0.678  Sum_probs=142.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             98569999999999998875799808999983-89099987347354488642511344566664148854541168861
Q gi|255764464|r    1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT   79 (149)
Q Consensus         1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT   79 (149)
                      +++|+.||++|+++|+++.+.|++|||||||+ +|+|+++|+|.+.+.+|||+||||+||++|++.+++++|+|||||||
T Consensus         5 ~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT   84 (152)
T COG0590           5 SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVT   84 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             45058899999999998887389977999991799889873377567788551499999999998608886787289986


Q ss_pred             CCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf             67768898999860888599971179885017413444316899998799282189999998999884
Q gi|255764464|r   80 LEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKE  147 (149)
Q Consensus        80 lEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~  147 (149)
                      +|||+||++||+||||+|||||++||+.|++++..++...+..+|+++|++|++++||.+++++||.+
T Consensus        85 ~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~~  152 (152)
T COG0590          85 LEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFRR  152 (152)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf             68289999999984899499973258876656540210377779666766533007899999987419


No 3  
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=100.00  E-value=3e-37  Score=244.68  Aligned_cols=107  Identities=50%  Similarity=0.698  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf             9999999998875799808999983-890999873473544886425113445666641488545411688616776889
Q gi|255764464|r    8 MSCALEEAQNAALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMC   86 (149)
Q Consensus         8 M~~A~~~A~~a~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC   86 (149)
                      |++||++|+++...|++|||||||+ +|+||+.|+|++.+.+|||.|||++||+++.++++.++++++|||||+|||+||
T Consensus         1 M~~Ai~~A~~a~~~g~~PvGaviv~~~g~ii~~g~N~~~~~~~~~~HaE~~ai~~a~~~~~~~~~~~~tly~TlEPC~mC   80 (109)
T cd01285           1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPMC   80 (109)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHH
T ss_conf             97999999987357999999999938997999980764668998634899999999987188766773577488985999


Q ss_pred             HHHHHHCCCCEEEEEECCCCCCEECCHH
Q ss_conf             8999860888599971179885017413
Q gi|255764464|r   87 AAAISLARIRRLYYGASNPKGGGIENGT  114 (149)
Q Consensus        87 ~~Ai~~agI~rVvyg~~d~~~g~~~~~~  114 (149)
                      ++||+|+||+|||||++||+.|++++..
T Consensus        81 ~~Ai~~~gI~~Vvyg~~~~~~g~~g~~~  108 (109)
T cd01285          81 AGALLWARIKRVVYGASDPKLGGIGFLI  108 (109)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCEECC
T ss_conf             9999995929899998489985502555


No 4  
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00  E-value=1.8e-34  Score=227.99  Aligned_cols=132  Identities=25%  Similarity=0.375  Sum_probs=118.2

Q ss_pred             CHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             5699999999999988--75799808999983890999873473544886425113445666641488545411688616
Q gi|255764464|r    3 KGNVFMSCALEEAQNA--ALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL   80 (149)
Q Consensus         3 ~d~~~M~~A~~~A~~a--~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTl   80 (149)
                      +|++||++||++|+++  ....|++||||||++|+||++||++.    .+..|||++||++|..+     .+|+||||||
T Consensus         2 ~d~~~M~~Al~lA~~~~g~t~pNP~VG~Vivk~g~iig~G~h~~----~G~~HAEv~Al~~a~~~-----~~gatlYVTL   72 (367)
T PRK10786          2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK-----AKGATAYVTL   72 (367)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC----CCCCCHHHHHHHHHHHH-----HCCCEEEEEE
T ss_conf             87999999999998469987999999999998999999995788----99989999999971343-----1497699983


Q ss_pred             CCCHH------HHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf             77688------98999860888599971179885017413444316899998799282189999998999884
Q gi|255764464|r   81 EPCTM------CAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKE  147 (149)
Q Consensus        81 EPC~M------C~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~  147 (149)
                      |||.+      |+.||+.+||+|||||..||+....|++...+...+    ++|..|++++||.+|++.||..
T Consensus        73 EPC~H~GkTpPC~~aIi~agI~rVvia~~DPnp~v~GkGi~~L~~aG----I~V~~g~l~~ea~~ln~~F~~~  141 (367)
T PRK10786         73 EPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAG----IDVSHGLMMSEAEALNKGFLKR  141 (367)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCC----CEEEECCHHHHHHHHHHHHHHH
T ss_conf             57346798945999999828988999688988212463699998769----8899742066799998999999


No 5  
>KOG1018 consensus
Probab=100.00  E-value=2.9e-34  Score=226.82  Aligned_cols=146  Identities=38%  Similarity=0.535  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHH---HHHHCCCCCCCCEEE
Q ss_conf             856999999999999887579-9808999983-89099987347354488642511344566---664148854541168
Q gi|255764464|r    2 KKGNVFMSCALEEAQNAALRN-EIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRM---GCRILSQEILPEVDL   76 (149)
Q Consensus         2 ~~d~~~M~~A~~~A~~a~~~g-~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~---a~~~~~~~~l~~~tl   76 (149)
                      .+|..||+.|+++|+++++.| ++|||||+|+ +|+|+++|+|.+++.+|||+|||+.+|+.   .++.++.++++++||
T Consensus         9 ~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~~tl   88 (169)
T KOG1018           9 DHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSETTL   88 (169)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCEE
T ss_conf             10479999999999861467778865799994798077215640024478104457887762777754307244148779


Q ss_pred             EECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCC--CCCCCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf             86167768898999860888599971179885017413444316--899998799282189999998999884
Q gi|255764464|r   77 YVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA--TCHHSPEIYPGISEQRSRQIIQDFFKE  147 (149)
Q Consensus        77 YtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~--~~~~~~~v~~gvl~ee~~~Ll~~ff~~  147 (149)
                      |||+|||+||++||.|+||++||||+.++++|+.++........  ...+.+...+|+..++...+++.|+.+
T Consensus        89 yvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~  161 (169)
T KOG1018          89 YVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVR  161 (169)
T ss_pred             EEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCC
T ss_conf             9995544889999998699789980114531146244100012304678641762215667766677754120


No 6  
>pfam00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region.
Probab=100.00  E-value=6.2e-33  Score=218.77  Aligned_cols=102  Identities=40%  Similarity=0.512  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             985699999999999988757-99808999983-8909998734735448864251134456666414885454116886
Q gi|255764464|r    1 MKKGNVFMSCALEEAQNAALR-NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV   78 (149)
Q Consensus         1 M~~d~~~M~~A~~~A~~a~~~-g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt   78 (149)
                      |+.|++||++|+++|++++.. +++|||||||+ +|+||+.|+|+++...|+|.|||++||.++.+......+++++|||
T Consensus         1 ~~~de~~m~~A~~~A~~a~~~~~~~~VGaviv~~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~~lyv   80 (104)
T pfam00383         1 MEWDEYFMRLALEAAKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERNAIRNAGRLGEGIKLEGATLYV   80 (104)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf             97899999999999986679889997899999279979998857075699963018999999999966997112632326


Q ss_pred             CCCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf             167768898999860888599971
Q gi|255764464|r   79 TLEPCTMCAAAISLARIRRLYYGA  102 (149)
Q Consensus        79 TlEPC~MC~~Ai~~agI~rVvyg~  102 (149)
                      |+|||+||+++|+|+||+|||||+
T Consensus        81 T~ePC~mC~~ai~~~gi~~Vvyg~  104 (104)
T pfam00383        81 TLEPCGMCRQAIIESGIKKVVFGT  104 (104)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEECC
T ss_conf             989769999999996919999809


No 7  
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794   This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00  E-value=8e-33  Score=218.13  Aligned_cols=134  Identities=28%  Similarity=0.388  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHH--HHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC----------------
Q ss_conf             99999999988--75799808999983-890999873473544886425113445666641488----------------
Q gi|255764464|r    8 MSCALEEAQNA--ALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQ----------------   68 (149)
Q Consensus         8 M~~A~~~A~~a--~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~----------------   68 (149)
                      |++|++||+++  ....|++||||||+ ||+|||.|++.  +.|.|  |||++||++|.++..+                
T Consensus         1 M~~AL~lA~k~~g~T~PNP~VGcViv~~ng~IVG~G~H~--kaG~~--HAE~~Al~~AG~~aRPeisLPkeanaLhefiC   76 (393)
T TIGR00326         1 MKRALDLAKKGQGTTHPNPLVGCVIVKKNGEIVGEGFHQ--KAGEP--HAEIHALRQAGENARPEISLPKEANALHEFIC   76 (393)
T ss_pred             CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCC--CCCCC--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             935676664043100579860048983387587524669--77887--08999999976636886568513567888765


Q ss_pred             ----CCCCCEEEEECCCCCHH------HHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf             ----54541168861677688------98999860888599971179885017413444316899998799282189999
Q gi|255764464|r   69 ----EILPEVDLYVTLEPCTM------CAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSR  138 (149)
Q Consensus        69 ----~~l~~~tlYtTlEPC~M------C~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~  138 (149)
                          --++|+|+|||||||.|      |+.||+.|||.|||++-.||+.-..|++.+.+...+    ++|..|+|.++|.
T Consensus        77 knhqGvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplvaGkG~~~L~~aG----IeV~~~~l~~~a~  152 (393)
T TIGR00326        77 KNHQGVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGKGIERLKQAG----IEVTFGILKEEAE  152 (393)
T ss_pred             HCCCCEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCC----CEEEECHHHHHHH
T ss_conf             226741207767981576688888715689997386148988865087222341479998669----7254401589864


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99899988409
Q gi|255764464|r  139 QIIQDFFKERR  149 (149)
Q Consensus       139 ~Ll~~ff~~kR  149 (149)
                      +|++.|.+.+|
T Consensus       153 ~lnk~Fl~~~~  163 (393)
T TIGR00326       153 KLNKGFLKRMR  163 (393)
T ss_pred             HCCHHHHHHHC
T ss_conf             00056788860


No 8  
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.97  E-value=1.8e-30  Score=203.96  Aligned_cols=134  Identities=29%  Similarity=0.395  Sum_probs=119.3

Q ss_pred             CHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             5699999999999988--75799808999983890999873473544886425113445666641488545411688616
Q gi|255764464|r    3 KGNVFMSCALEEAQNA--ALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTL   80 (149)
Q Consensus         3 ~d~~~M~~A~~~A~~a--~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTl   80 (149)
                      .|+.||++||++|+++  ....++|||||||++|+||+.|++..  .++|  |||..||++|     .....|+|+|+||
T Consensus         5 ~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~--aG~p--HAEv~Al~~a-----g~~a~Gat~yVTL   75 (146)
T COG0117           5 LDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEK--AGGP--HAEVCALRMA-----GEAARGATAYVTL   75 (146)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC--CCCC--CHHHHHHHHC-----CCCCCCCEEEEEE
T ss_conf             79999999999998508667899966699988999986660377--8997--2899999975-----8555787899972


Q ss_pred             CCCHH------HHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             77688------9899986088859997117988501741344431689999879928218999999899988409
Q gi|255764464|r   81 EPCTM------CAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR  149 (149)
Q Consensus        81 EPC~M------C~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~~~~~~v~~gvl~ee~~~Ll~~ff~~kR  149 (149)
                      |||.+      |+.+|+.+||+|||++..||+....+.+...+....    ++|+.|+|++|+..|++.|+...|
T Consensus        76 EPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aG----i~V~~gil~~e~~~l~~~f~~~~~  146 (146)
T COG0117          76 EPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAG----IEVEVGILEEEAEKLNEGFLKRMR  146 (146)
T ss_pred             CCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCC----CEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf             47666899964579999709888999952899301684699999769----869960408999998888870169


No 9  
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.96  E-value=4.8e-29  Score=195.40  Aligned_cols=105  Identities=33%  Similarity=0.450  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHH--HHCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf             99999999988--75799808999983-8909998734735448864251134456666414885454116886167768
Q gi|255764464|r    8 MSCALEEAQNA--ALRNEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCT   84 (149)
Q Consensus         8 M~~A~~~A~~a--~~~g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~   84 (149)
                      |++||++|+++  ....++|||||||+ +|+||++|||+    .+++.|||++||+++.+    ++++++|||||||||.
T Consensus         1 M~~Ai~lA~~~~g~t~pnP~VGaViv~~~g~Iis~g~~~----~~g~~HAE~~Ai~~a~~----~~~~g~tlyvTLEPC~   72 (115)
T cd01284           1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHR----KAGGPHAEVNALASAGE----KLARGATLYVTLEPCS   72 (115)
T ss_pred             CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECC----CCCCHHHHHHHHHHHHH----HCCCCCEEEEEECCCC
T ss_conf             979999998537988999998999991799899988479----89974099999998523----1357976999867834


Q ss_pred             H------HHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCC
Q ss_conf             8------98999860888599971179885017413444316
Q gi|255764464|r   85 M------CAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA  120 (149)
Q Consensus        85 M------C~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~  120 (149)
                      |      |+.+|+++||+|||||..||+....+++.+.+...
T Consensus        73 ~~g~tp~Ca~ai~~~gI~~Vv~g~~DP~p~v~g~G~~~Lk~~  114 (115)
T cd01284          73 HHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAA  114 (115)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             789875499999983929999967594977488789999867


No 10 
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP,  providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.93  E-value=2.2e-25  Score=173.41  Aligned_cols=100  Identities=34%  Similarity=0.358  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCC---------------------CCCCCCHHHHHHHH
Q ss_conf             699999999999988757998089999838909998734735448---------------------86425113445666
Q gi|255764464|r    4 GNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELK---------------------DVTAHAEILAIRMG   62 (149)
Q Consensus         4 d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~---------------------d~t~HAEi~ai~~a   62 (149)
                      |++||++|..+|+++.. ...+||||||++|+||+.|||..-...                     ..+-|||++||.++
T Consensus         1 De~fM~lA~~~A~rS~~-~~~~VGaVIV~~~~iIs~GyNG~p~g~~~~~~~~~~~~~~~~~~~~~~~~~iHAE~nAi~~a   79 (131)
T cd01286           1 DEYFMAIARLAALRSTC-PRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA   79 (131)
T ss_pred             CHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             98899999999986699-99986899997993896644899888887400033112444332322222178999999999


Q ss_pred             HHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             64148854541168861677688989998608885999711798
Q gi|255764464|r   63 CRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPK  106 (149)
Q Consensus        63 ~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~  106 (149)
                      .+.  ...+.|+|||||++||+||+.+|+++||+||||...-+.
T Consensus        80 ~~~--~~~~~g~tlYvT~~PC~~Ca~~Ii~aGI~rVvy~~~y~~  121 (131)
T cd01286          80 ARH--GVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDD  121 (131)
T ss_pred             HHC--CCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             982--998888666607897799999999829999998997699


No 11 
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes.  All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.90  E-value=4.2e-24  Score=165.69  Aligned_cols=92  Identities=26%  Similarity=0.254  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHC-CCCCEEEEEE--ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf             99999999988757-9980899998--38909998734735448864251134456666414885454116886167768
Q gi|255764464|r    8 MSCALEEAQNAALR-NEIPVGAVAV--LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCT   84 (149)
Q Consensus         8 M~~A~~~A~~a~~~-g~~PvGaviv--~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~   84 (149)
                      |+.|+++|++|+.. +++||||+||  ++|++|+.|+|..+...++|.|||++||.+|.+..   .+++++||+|+|||.
T Consensus         1 m~~A~~~a~~ay~p~s~~pVGa~iv~~~~~~ii~~G~N~en~~~~~t~hAE~~Ai~~a~~~~---~~~~~tlyvtl~PC~   77 (96)
T cd00786           1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEG---DTKGQMLYVALSPCG   77 (96)
T ss_pred             CHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHCC---CCCCEECEEECCCHH
T ss_conf             97999999965698889988999998779979977646178667973379999999975225---876110787229919


Q ss_pred             HHHHHHHHCCCCEEEEEE
Q ss_conf             898999860888599971
Q gi|255764464|r   85 MCAAAISLARIRRLYYGA  102 (149)
Q Consensus        85 MC~~Ai~~agI~rVvyg~  102 (149)
                      ||+++|+++||++||+-.
T Consensus        78 ~C~q~I~e~gik~vvi~~   95 (96)
T cd00786          78 ACAQLIIELGIKDVIVVL   95 (96)
T ss_pred             HHHHHHHHHCCCCEEEEE
T ss_conf             999999998899689996


No 12 
>KOG2771 consensus
Probab=99.85  E-value=1.8e-21  Score=149.89  Aligned_cols=134  Identities=19%  Similarity=0.322  Sum_probs=113.9

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC------------
Q ss_conf             569999999999998875799808999983--890999873473544886425113445666641488------------
Q gi|255764464|r    3 KGNVFMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQ------------   68 (149)
Q Consensus         3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~--~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~------------   68 (149)
                      .+..+|+++|+.|..+...  .|+|++|++  .+.|++.|...+-. .+|..|+-|++++...++...            
T Consensus       166 ~~~ri~e~~I~~a~~~~~~--~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~  242 (344)
T KOG2771         166 EIARIGELLIAMATDGHAS--RPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLI  242 (344)
T ss_pred             HHHHHHHHHHHHHHHHCCC--CCCCCEECCCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999998999998640025--6765045578613377447774223-474888899999999998753654444461001


Q ss_pred             --------------------------CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCCC
Q ss_conf             --------------------------545411688616776889899986088859997117988501741344431689
Q gi|255764464|r   69 --------------------------EILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATC  122 (149)
Q Consensus        69 --------------------------~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~~  122 (149)
                                                +.+.|+++|.|+|||.||++|++|+||+||+|+..+..+|++++.+.++..+.+
T Consensus       243 f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~L  322 (344)
T KOG2771         243 FNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSL  322 (344)
T ss_pred             CCCCCCHHHHHHCHHCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEECCCC
T ss_conf             35200035553010004552236666364343378734738888999988764303653577777775412576302114


Q ss_pred             CCCCEEEECCCHHHHHH
Q ss_conf             99987992821899999
Q gi|255764464|r  123 HHSPEIYPGISEQRSRQ  139 (149)
Q Consensus       123 ~~~~~v~~gvl~ee~~~  139 (149)
                      ||+++|+.+++++++..
T Consensus       323 Nhry~vfr~~~e~d~~~  339 (344)
T KOG2771         323 NHRYEVFRGYLEEDPIP  339 (344)
T ss_pred             CCCEEEEEEECCCCCCC
T ss_conf             76147888505555500


No 13 
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.82  E-value=5.7e-20  Score=140.88  Aligned_cols=116  Identities=30%  Similarity=0.296  Sum_probs=88.9

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCC----------------------CCCCCHHHHHH
Q ss_conf             56999999999999887579980899998389099987347354488----------------------64251134456
Q gi|255764464|r    3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKD----------------------VTAHAEILAIR   60 (149)
Q Consensus         3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d----------------------~t~HAEi~ai~   60 (149)
                      +|++||+.|.-.|.++-... .-||||||++++||+.|||..-...+                      -+-|||+|||-
T Consensus         8 wdeyfm~~A~l~a~Rstc~r-~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAil   86 (164)
T COG2131           8 WDEYFMAIAELVALRSTCPR-RQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAIL   86 (164)
T ss_pred             HHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999998743866-54568998699599851388876567767667600122256623578899999999999


Q ss_pred             HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEECCHHHHHHCCC
Q ss_conf             6664148854541168861677688989998608885999711798850174134443168
Q gi|255764464|r   61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLAT  121 (149)
Q Consensus        61 ~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d~~~g~~~~~~~~~~~~~  121 (149)
                      +|.+..-.  +.|+|||+|+.||.+|+..|+++||++|||+...+..-.......++...+
T Consensus        87 ~aa~~g~~--~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~ag  145 (164)
T COG2131          87 QAARHGVG--LEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAG  145 (164)
T ss_pred             HHHHCCCC--CCCCEEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             99864788--777089998246589999999828658995067775101377999998679


No 14 
>KOG3127 consensus
Probab=99.60  E-value=2.9e-15  Score=112.60  Aligned_cols=98  Identities=35%  Similarity=0.405  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEE-ECCEEEEEEECCCCCCC--C------------------CCCCCHHHHHH
Q ss_conf             856999999999999887579980899998-38909998734735448--8------------------64251134456
Q gi|255764464|r    2 KKGNVFMSCALEEAQNAALRNEIPVGAVAV-LNNKIISRAGNRNRELK--D------------------VTAHAEILAIR   60 (149)
Q Consensus         2 ~~d~~~M~~A~~~A~~a~~~g~~PvGaviv-~~g~ii~~g~N~~~~~~--d------------------~t~HAEi~ai~   60 (149)
                      ++|.+||++|.-.|+++.+.. .-|||+|| +++.|||.|||..-..-  +                  -+-|||.+||.
T Consensus        65 swd~yFM~iA~LsA~RSkDpn-tqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~NAi~  143 (230)
T KOG3127          65 SWDDYFMAIAFLSAKRSKDPN-TQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEENAIL  143 (230)
T ss_pred             CHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf             689999999999998535965-6602699737987999603787677777777544344224877625888505778998


Q ss_pred             HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECC
Q ss_conf             66641488545411688616776889899986088859997117
Q gi|255764464|r   61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASN  104 (149)
Q Consensus        61 ~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d  104 (149)
                      .+.    ..++.++++|+|+=||.-|+-.|+++||++|||+..+
T Consensus       144 ~~~----~~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~  183 (230)
T KOG3127         144 NKG----RERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSY  183 (230)
T ss_pred             HHC----CCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEECCCC
T ss_conf             717----5504771689862456888999998545650422111


No 15 
>TIGR02571 ComEB ComE operon protein 2; InterPro: IPR013404    This is encoded in the ComE operon for "late competence" as characterised in B. subtilis . The presence of a cytidine/deoxycytidine deaminase domain in these proteins means that they may perform this activity..
Probab=99.30  E-value=3.7e-12  Score=93.97  Aligned_cols=101  Identities=28%  Similarity=0.385  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCC---------------CCCCCHHHHHHHHHHH
Q ss_conf             9856999999999999887579980899998389099987347354488---------------6425113445666641
Q gi|255764464|r    1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKD---------------VTAHAEILAIRMGCRI   65 (149)
Q Consensus         1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d---------------~t~HAEi~ai~~a~~~   65 (149)
                      ..+|++||..+.-++.++.-. -..|||-||++.+||+-|||.......               .|-||||+||-+.++.
T Consensus         3 i~W~~yfm~q~~ll~~rstC~-rl~vGativ~d~riiaGGynGs~~G~~hC~~~GC~~~d~hC~rtihaemna~lqCak~   81 (151)
T TIGR02571         3 IKWDQYFMAQSHLLALRSTCT-RLSVGATIVRDKRIIAGGYNGSVAGEVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKF   81 (151)
T ss_pred             CCHHHHHHHHHHHHHHHHHCC-HHEECEEEEECCEEEECCCCCEECCCCEEECCCCEEEECCEEEHHHHHHHHHHHHHHC
T ss_conf             536788888888875420000-0000204542362662364530137723312773786174300367889999988640


Q ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECC
Q ss_conf             488545411688616776889899986088859997117
Q gi|255764464|r   66 LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASN  104 (149)
Q Consensus        66 ~~~~~l~~~tlYtTlEPC~MC~~Ai~~agI~rVvyg~~d  104 (149)
                       |.. -+++++|+|.-||.-|...|+++||+.|+|.-.-
T Consensus        82 -G~~-t~~a~~yvt~fPCl~C~k~~~q~Gi~~~~y~~~y  118 (151)
T TIGR02571        82 -GVS-TEEAEIYVTHFPCLQCTKSIIQAGIKKVYYAKDY  118 (151)
T ss_pred             -CCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             -554-3663489850756789999998667874666632


No 16 
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes  the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=98.26  E-value=9.2e-06  Score=55.53  Aligned_cols=95  Identities=26%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHCC-CCCEEEEEEEC-CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-----CC
Q ss_conf             99999999887579-98089999838-9099987347354488642511344566664148854541168861-----67
Q gi|255764464|r    9 SCALEEAQNAALRN-EIPVGAVAVLN-NKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT-----LE   81 (149)
Q Consensus         9 ~~A~~~A~~a~~~g-~~PvGaviv~~-g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT-----lE   81 (149)
                      +.|++...+++... +.||||+++.+ |+| -.|.|-.+.....+.|||..||.++...-...  -..+++++     ..
T Consensus         2 ~~a~~~~~~ay~pyS~f~Vga~~~~~~G~i-~~G~nvEna~~~~~~cAEr~ai~~~~~~g~~~--~~~~~~~~~~~~~~s   78 (112)
T cd01283           2 EAALAAAEFAYAPYSNFTVGAALLTKDGRI-FTGVNVENASYGLTLCAERTAIGKAVSEGLRR--YLVTWAVSDEGGVWS   78 (112)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEEEECCCCE-EEEEEEECCCCCCCEEHHHHHHHHHHHCCCCC--EEEEEEEECCCCCCC
T ss_conf             779999846768867991209999389989-99898706778875118899999999828985--499999938997568


Q ss_pred             CCHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             7688989998608885999711798
Q gi|255764464|r   82 PCTMCAAAISLARIRRLYYGASNPK  106 (149)
Q Consensus        82 PC~MC~~Ai~~agI~rVvyg~~d~~  106 (149)
                      ||-+|...|....=+++.+-..+++
T Consensus        79 PCG~CrQ~l~Ef~~~~~~i~~~~~~  103 (112)
T cd01283          79 PCGACRQVLAEFLPSRLYIIIDNPK  103 (112)
T ss_pred             CCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             7346899999867899689999799


No 17 
>PRK12411 cytidine deaminase; Provisional
Probab=98.05  E-value=9.8e-05  Score=49.34  Aligned_cols=98  Identities=17%  Similarity=0.269  Sum_probs=67.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             985699999999999988757-9980899998-38909998734735448864251134456666414885454116886
Q gi|255764464|r    1 MKKGNVFMSCALEEAQNAALR-NEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV   78 (149)
Q Consensus         1 M~~d~~~M~~A~~~A~~a~~~-g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt   78 (149)
                      |++. ..++.|.+..++|+.. -+.||||+++ ++|+|. .|-|..+.....|.+||..||-++... +...+....+++
T Consensus         1 m~~~-~L~~~A~~a~~~AYaPYS~F~VGAall~~~G~i~-~G~NvEnasy~~t~CAEr~Ai~~avs~-g~~~~~~I~v~~   77 (132)
T PRK12411          1 MNSK-QLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVA   77 (132)
T ss_pred             CCHH-HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEE-EEECCCCCCCCCCEEHHHHHHHHHHHC-CCCCEEEEEEEC
T ss_conf             9889-9999999999718288679959999995899999-987415677887513377799999864-887689999986


Q ss_pred             C----CCCCHHHHHHHHHCC--CCEEEEE
Q ss_conf             1----677688989998608--8859997
Q gi|255764464|r   79 T----LEPCTMCAAAISLAR--IRRLYYG  101 (149)
Q Consensus        79 T----lEPC~MC~~Ai~~ag--I~rVvyg  101 (149)
                      .    .-||-||-..|....  --+|+..
T Consensus        78 ~~~~~~~PCG~CRQvl~Ef~~~~~~i~~~  106 (132)
T PRK12411         78 DTKRPVPPCGACRQVMVELCKQDTKVYLS  106 (132)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             89986797388899999966899579998


No 18 
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=97.76  E-value=0.00021  Score=47.41  Aligned_cols=93  Identities=22%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHCC-CCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC----CC
Q ss_conf             999999999887579-9808999983-89099987347354488642511344566664148854541168861----67
Q gi|255764464|r    8 MSCALEEAQNAALRN-EIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVT----LE   81 (149)
Q Consensus         8 M~~A~~~A~~a~~~g-~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT----lE   81 (149)
                      ...|.+.+..|+..- +.||||++.- +|+| -.|-|-.+.+.--|.|||..||-+|... +...+....+|..    .-
T Consensus         9 ~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i-~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~~~~~s   86 (134)
T COG0295           9 FALAPEAAANAYAPYSKFKVGAALRTKDGRI-YTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADTGKPVS   86 (134)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEECCCCE-EEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCC
T ss_conf             9999999872448645782779999279979-9988660254552163899999999973-9971799999748999759


Q ss_pred             CCHHHHHHHHHCC-CCEEEEEE
Q ss_conf             7688989998608-88599971
Q gi|255764464|r   82 PCTMCAAAISLAR-IRRLYYGA  102 (149)
Q Consensus        82 PC~MC~~Ai~~ag-I~rVvyg~  102 (149)
                      ||-||-.-|.... =...++-.
T Consensus        87 PCG~CRQ~i~Ef~~~d~~ii~~  108 (134)
T COG0295          87 PCGACRQVLAEFCGDDTLIILL  108 (134)
T ss_pred             CCHHHHHHHHHHCCCCCEEEEE
T ss_conf             8588999999866877459996


No 19 
>PRK05578 cytidine deaminase; Validated
Probab=97.72  E-value=0.0008  Score=43.86  Aligned_cols=91  Identities=22%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             985699999999999988757-9980899998-38909998734735448864251134456666414885454116886
Q gi|255764464|r    1 MKKGNVFMSCALEEAQNAALR-NEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV   78 (149)
Q Consensus         1 M~~d~~~M~~A~~~A~~a~~~-g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt   78 (149)
                      |+.++. ++.|.+..++|+.. -+.+|||++. ++|+|+. |.|..+...-.+.+||..||-.|... +...+....++.
T Consensus         1 ~d~~~L-~~~A~~a~~~AyaPYS~F~VGAall~~~G~i~~-G~NvEnasy~~~~CAEr~Ai~~avs~-g~~~i~~iav~~   77 (132)
T PRK05578          1 MDWKEL-IEAAVEASEKAYAPYSKFPVGAALLTDDGRIYT-GCNIENASYGLTNCAERTAIFKAISE-GGGRLVAIACVG   77 (132)
T ss_pred             CCHHHH-HHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEE-EEEEECCCCCCCCCHHHHHHHHHHHC-CCCCEEEEEEEC
T ss_conf             978999-999999998366985688067999908998999-89760578887755779999999864-897378999984


Q ss_pred             C----CCCCHHHHHHHHHCC
Q ss_conf             1----677688989998608
Q gi|255764464|r   79 T----LEPCTMCAAAISLAR   94 (149)
Q Consensus        79 T----lEPC~MC~~Ai~~ag   94 (149)
                      .    .-||-+|-..|....
T Consensus        78 ~~~~~~~PCG~CRQvl~Ef~   97 (132)
T PRK05578         78 ETGEPLSPCGRCRQVLAEFG   97 (132)
T ss_pred             CCCCCCCCCHHHHHHHHHHC
T ss_conf             89982697524899999856


No 20 
>TIGR01354 cyt_deam_tetra cytidine deaminase; InterPro: IPR006262   Cytidine deaminase is a small homotetrameric zinc metalloprotein. It is found in humans and most bacteria. A related homodimeric form, IPR006263 from INTERPRO, with a much larger subunit is found in E. coli  and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=97.58  E-value=0.00029  Score=46.55  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHCC-CCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--CCCCC---CCCEEEEEC
Q ss_conf             99999999999887579-9808999983890999873473544886425113445666641--48854---541168861
Q gi|255764464|r    6 VFMSCALEEAQNAALRN-EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRI--LSQEI---LPEVDLYVT   79 (149)
Q Consensus         6 ~~M~~A~~~A~~a~~~g-~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~--~~~~~---l~~~tlYtT   79 (149)
                      .+++.|.+..++|+..= +.||||.++.++.-+-.|-|-.|.+--.|.+||..||.++-..  .+.++   +....++++
T Consensus         2 ~l~~~a~~a~~~aY~PYS~F~VGAa~~t~dg~~f~G~NvENASY~~~~CAEr~Ai~~~~~~yP~GG~r~G~f~~~~~~~~   81 (135)
T TIGR01354         2 KLFKAAQEALKKAYAPYSNFKVGAALLTKDGRVFTGVNVENASYGLTICAERSAIGKAISAYPAGGRRDGKFVAIAVAAS   81 (135)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
T ss_conf             68889999998527876688116999856998898763421367670468999999998608878753551279998626


Q ss_pred             C-----CCCHHHHHHHHHCCC
Q ss_conf             6-----776889899986088
Q gi|255764464|r   80 L-----EPCTMCAAAISLARI   95 (149)
Q Consensus        80 l-----EPC~MC~~Ai~~agI   95 (149)
                      -     -||=||=.-|..-.-
T Consensus        82 ~~~D~~~PCG~CRQvl~EF~~  102 (135)
T TIGR01354        82 ANDDSVSPCGACRQVLAEFAK  102 (135)
T ss_pred             CCCCCCCCCCHHHHHHHHHCC
T ss_conf             988832676035777887508


No 21 
>PRK06848 hypothetical protein; Validated
Probab=97.38  E-value=0.0038  Score=39.77  Aligned_cols=96  Identities=18%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE---
Q ss_conf             56999999999999887579980899998-38909998734735448864251134456666414885454116886---
Q gi|255764464|r    3 KGNVFMSCALEEAQNAALRNEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV---   78 (149)
Q Consensus         3 ~d~~~M~~A~~~A~~a~~~g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt---   78 (149)
                      +|...++.|++..++++...+.+|||.|. ++|+|+ .|-|..+.....+.-||..||-+|-.. +...+.......   
T Consensus         6 ~d~eLi~~A~~a~~~aY~ps~~~VgAAll~~dG~i~-tG~NvENasy~~~~CAEr~Ai~~Avs~-G~~~~~~iv~v~~~~   83 (139)
T PRK06848          6 EDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISE-GDAGIDTIVAVRHPK   83 (139)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEE-EEECCCCCCCCCCCCHHHHHHHHHHHC-CCCCEEEEEEEECCC
T ss_conf             999999999999996589999973899993899999-986523676785517899999999987-997558999996058


Q ss_pred             ---------CCCCCHHHHHHHHHCCCC-EEEE
Q ss_conf             ---------167768898999860888-5999
Q gi|255764464|r   79 ---------TLEPCTMCAAAISLARIR-RLYY  100 (149)
Q Consensus        79 ---------TlEPC~MC~~Ai~~agI~-rVvy  100 (149)
                               -+-||-+|-..|...+-. +|++
T Consensus        84 ~~~~~~~~~~~sPCG~CRQvl~Ef~~~~~viv  115 (139)
T PRK06848         84 PHEDDREIRVVSPCGACRELISDYDKNTRVIV  115 (139)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             88777765221782789999999789988999


No 22 
>PRK08298 cytidine deaminase; Validated
Probab=97.30  E-value=0.0061  Score=38.57  Aligned_cols=101  Identities=12%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE-
Q ss_conf             9856999999999999887579980899998-38909998734735448864251134456666414885454116886-
Q gi|255764464|r    1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV-   78 (149)
Q Consensus         1 M~~d~~~M~~A~~~A~~a~~~g~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt-   78 (149)
                      |+.|....+.|+++-++.+..|.. ++|.|. ++|+|+. |-|--+.+...+..||..||-+|-+. +...+.-..+.. 
T Consensus         1 m~~~q~Lv~~A~~~~~~ry~~~~~-gaAAllt~dG~I~t-G~NvEnasy~~~lCAEr~Ai~~Avs~-G~r~~~~I~V~~~   77 (128)
T PRK08298          1 MNIEQALYDAAKELLEQRYPNGWG-GAAAMRTEDGTILT-SVAPEVINASTELCMETGAICEAHKL-QKRVTHSICVARE   77 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCEEE-EECCCCCCCCCCCCHHHHHHHHHHHC-CCCEEEEEEEEEC
T ss_conf             947899999999999974746675-38999947997999-74215566774515778999999976-9946999999916


Q ss_pred             -------CCCCCHHHHHHHHHCCCC-EEEEEECC
Q ss_conf             -------167768898999860888-59997117
Q gi|255764464|r   79 -------TLEPCTMCAAAISLARIR-RLYYGASN  104 (149)
Q Consensus        79 -------TlEPC~MC~~Ai~~agI~-rVvyg~~d  104 (149)
                             -+-||-+|-..|...+=. +|+....|
T Consensus        78 ~~~~~~~vl~PCG~CRQ~L~Efg~d~~V~v~~~d  111 (128)
T PRK08298         78 NEHSPLKVLSPCGVCQERLFYWGPDVMVAVTNAD  111 (128)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             8888726658977999999997999789996899


No 23 
>KOG0833 consensus
Probab=95.64  E-value=0.15  Score=30.20  Aligned_cols=90  Identities=18%  Similarity=0.082  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHC-----CCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE----C
Q ss_conf             999999988757-----99808999983-8909998734735448864251134456666414885454116886----1
Q gi|255764464|r   10 CALEEAQNAALR-----NEIPVGAVAVL-NNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV----T   79 (149)
Q Consensus        10 ~A~~~A~~a~~~-----g~~PvGaviv~-~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt----T   79 (149)
                      .-+.++++|...     -+.||||++.- +|+| -.|-|-.+-...++-|||..||.++...--++....+.+-+    =
T Consensus        23 ~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGri-f~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~~~~aV~~~~~~~f  101 (173)
T KOG0833          23 ELLKLARKAMKLAYAPYSKFKVGAAGRASSGRI-FLGVNVENASYHHSICAERFAIANLALNGERKFRAIAVVAYEDGDF  101 (173)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCE-EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf             999999999985348855784478997059838-9851321467777621999999999970765414799995378876


Q ss_pred             CCCCHHHHHHHHHCCCCEEEE
Q ss_conf             677688989998608885999
Q gi|255764464|r   80 LEPCTMCAAAISLARIRRLYY  100 (149)
Q Consensus        80 lEPC~MC~~Ai~~agI~rVvy  100 (149)
                      ..||-.|-.-|..-+-.-.++
T Consensus       102 ~tPCG~CRQfl~Ef~~~~~l~  122 (173)
T KOG0833         102 TTPCGVCRQFLREFGNASLLL  122 (173)
T ss_pred             CCCCHHHHHHHHHHHHCCEEE
T ss_conf             797588999999984140046


No 24 
>PRK09027 cytidine deaminase; Provisional
Probab=94.60  E-value=0.29  Score=28.46  Aligned_cols=67  Identities=24%  Similarity=0.235  Sum_probs=46.2

Q ss_pred             CCCEEEEEEE-CCEEEEEEECCCCC--CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf             9808999983-89099987347354--48864251134456666414885454116886167768898999860
Q gi|255764464|r   23 EIPVGAVAVL-NNKIISRAGNRNRE--LKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLA   93 (149)
Q Consensus        23 ~~PvGaviv~-~g~ii~~g~N~~~~--~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~Ai~~a   93 (149)
                      +..||||-.- .|++ =.|-|....  ..+-|-|||-.||..|+.+-.+ .+  ..|.||--||-+|-.=+-.-
T Consensus        70 ~F~VGAia~G~SG~~-Y~GaN~EF~g~~l~~sVHAEQ~aI~~Awl~gE~-~l--~~iaVn~~PCGHCRQFmnEL  139 (295)
T PRK09027         70 HFNVGAIARGLSGNF-YFGANMEFAGAALQQTVHAEQSAISHAWLRGEK-GI--ADITVNYTPCGHCRQFMNEL  139 (295)
T ss_pred             CCEEEEEEECCCCCE-EEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCC-CC--EEEEEECCCCHHHHHHHHHC
T ss_conf             773558996388767-875044558998666311999999999973765-53--06885057745789999863


No 25 
>pfam08210 APOBEC_N APOBEC-like N-terminal domain. A mechanism of generating protein diversity is mRNA editing. Members of this family are C-to-U editing enzymes. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination.APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerization and this complex interacts with RNA binding proteins to from the editosome (and references therein).
Probab=93.21  E-value=0.14  Score=30.42  Aligned_cols=56  Identities=25%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHH-H-CCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             99987347354488642511344566664-1-488545411688616776889899986
Q gi|255764464|r   36 IISRAGNRNRELKDVTAHAEILAIRMGCR-I-LSQEILPEVDLYVTLEPCTMCAAAISL   92 (149)
Q Consensus        36 ii~~g~N~~~~~~d~t~HAEi~ai~~a~~-~-~~~~~l~~~tlYtTlEPC~MC~~Ai~~   92 (149)
                      .+..|+-+ ++..++-.|||+.-|.+... . .....-=.-|-|+|=.||.-|+..+..
T Consensus        40 ~~~~G~l~-n~~~~~~~HaE~~Fl~~~~~~~~~~~~~~y~VTwy~SWSPC~~Ca~~v~~   97 (116)
T pfam08210        40 SLDRGILR-NEVANTGCHAELCFLEWFGSLRLLPADQRYSVTWYVSWSPCANCAQKVAE   97 (116)
T ss_pred             CEECCEEC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf             21002674-67788775289999999744346897776999999653876999999999


No 26 
>TIGR01355 cyt_deam_dimer cytidine deaminase; InterPro: IPR006263   Cytidine deaminase is a homodimeric zinc metalloprotein found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals, IPR006262 from INTERPRO. Both types may act on deoxycytidine as well as cytidine. ; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=86.44  E-value=2.3  Score=23.12  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             CCCEEEEEE-ECCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC------CCCCHHHHHHHHH
Q ss_conf             980899998-38909998734735448--8642511344566664148854541168861------6776889899986
Q gi|255764464|r   23 EIPVGAVAV-LNNKIISRAGNRNRELK--DVTAHAEILAIRMGCRILSQEILPEVDLYVT------LEPCTMCAAAISL   92 (149)
Q Consensus        23 ~~PvGaviv-~~g~ii~~g~N~~~~~~--d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtT------lEPC~MC~~Ai~~   92 (149)
                      +.+||||-. ..|++ =-|-|......  .-|=|||--+|-.++=+ +.+.|...++=.+      -.||.+|-.=+-.
T Consensus        42 ~f~VgAvgrGsSGR~-YLGvNvEF~gl~l~~sIHAEQfli~hl~Ln-~Er~l~~lavs~ngdc~~F~~PCghCrQFl~E  118 (311)
T TIGR01355        42 KFNVGAVGRGSSGRF-YLGVNVEFPGLPLHHSIHAEQFLISHLALN-NERGLNDLAVSSNGDCSVFAAPCGHCRQFLNE  118 (311)
T ss_pred             CCCEEEEEEECCCCE-EEEECEECCCCCCCCCCCHHHHHHHHHHHC-CCCCEEEEEEEECCCEEECCCCCCCHHHHHHH
T ss_conf             343278998314764-200011047858786376148999999970-79850046785157653448878517789986


No 27 
>PRK04388 disulfide bond formation protein B; Provisional
Probab=71.93  E-value=1.5  Score=24.15  Aligned_cols=12  Identities=42%  Similarity=1.013  Sum_probs=9.1

Q ss_pred             EECCCCCHHHHH
Q ss_conf             861677688989
Q gi|255764464|r   77 YVTLEPCTMCAA   88 (149)
Q Consensus        77 YtTlEPC~MC~~   88 (149)
                      ..-+|||+||-.
T Consensus        32 ~~gL~PCpLCI~   43 (172)
T PRK04388         32 HLGLEPCPLCIF   43 (172)
T ss_pred             HCCCCCCHHHHH
T ss_conf             718888788999


No 28 
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=71.41  E-value=9.2  Score=19.46  Aligned_cols=37  Identities=38%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             CCCHHHHHHHHHHHC----------------------CCCCCC---CEEEEECCCCCHHHHH
Q ss_conf             251134456666414----------------------885454---1168861677688989
Q gi|255764464|r   52 AHAEILAIRMGCRIL----------------------SQEILP---EVDLYVTLEPCTMCAA   88 (149)
Q Consensus        52 ~HAEi~ai~~a~~~~----------------------~~~~l~---~~tlYtTlEPC~MC~~   88 (149)
                      .|||+.|.+-..+.+                      +...|+   ..-||+|--||-=|+.
T Consensus        71 ~HAEVlARRaf~r~Ly~el~~~~~~~~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGDAsi  132 (374)
T smart00552       71 CHAEILARRGFLRFLYSELQLFNSSSEDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASI  132 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCEEEEEECCCCCCCCCC
T ss_conf             12999999999999999999871788885689878898357469838999967798620134


No 29 
>PRK01749 disulfide bond formation protein B; Provisional
Probab=68.49  E-value=2  Score=23.46  Aligned_cols=12  Identities=42%  Similarity=1.007  Sum_probs=9.1

Q ss_pred             EECCCCCHHHHH
Q ss_conf             861677688989
Q gi|255764464|r   77 YVTLEPCTMCAA   88 (149)
Q Consensus        77 YtTlEPC~MC~~   88 (149)
                      +.-+|||+||-.
T Consensus        35 ~lgL~PCpLCI~   46 (175)
T PRK01749         35 VMLLKPCVMCIY   46 (175)
T ss_pred             HCCCCCCHHHHH
T ss_conf             818886489999


No 30 
>pfam08211 dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region.
Probab=66.41  E-value=12  Score=18.82  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCCEEEEEE-ECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             6999999999999887579-980899998-389099987347354488642511344566664
Q gi|255764464|r    4 GNVFMSCALEEAQNAALRN-EIPVGAVAV-LNNKIISRAGNRNRELKDVTAHAEILAIRMGCR   64 (149)
Q Consensus         4 d~~~M~~A~~~A~~a~~~g-~~PvGaviv-~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~   64 (149)
                      ++...+.|++-|++++..- +.|+|++|. .+|+|. .|+|-.+-.-||+.-+--.||...--
T Consensus        33 ~d~L~~~Al~Aa~~syaPYS~~~~G~Al~~~~G~i~-~G~~~EnAAfnPSl~PlQaAL~~~~~   94 (124)
T pfam08211        33 SDALVQRALAAANRSHAPYSKSPSGVALEDKDGKVY-AGRYAENAAFNPSLPPLQAALVDFVA   94 (124)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             479999999999825588567960179993799999-85652302268983589999999997


No 31 
>PRK02110 disulfide bond formation protein B; Provisional
Probab=62.26  E-value=3  Score=22.38  Aligned_cols=11  Identities=27%  Similarity=0.878  Sum_probs=8.6

Q ss_pred             ECCCCCHHHHH
Q ss_conf             61677688989
Q gi|255764464|r   78 VTLEPCTMCAA   88 (149)
Q Consensus        78 tTlEPC~MC~~   88 (149)
                      .-+|||+||-.
T Consensus        36 lgL~PC~LCI~   46 (169)
T PRK02110         36 KGEDPCPLCII   46 (169)
T ss_pred             CCCCCCHHHHH
T ss_conf             08876576999


No 32 
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636   This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC)  and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=51.81  E-value=2.5  Score=22.88  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=18.1

Q ss_pred             CCCCEEEEEEEC--CEEEEEEECCCCCCCCCCC
Q ss_conf             998089999838--9099987347354488642
Q gi|255764464|r   22 NEIPVGAVAVLN--NKIISRAGNRNRELKDVTA   52 (149)
Q Consensus        22 g~~PvGaviv~~--g~ii~~g~N~~~~~~d~t~   52 (149)
                      |.+||||+|++.  .+.+.-|-|-+-=.+||.+
T Consensus       260 gG~PiGA~~~~e~~a~~~~~G~HGsTFGGNPLA  292 (402)
T TIGR00707       260 GGVPIGAVLAKEEVAEALTPGDHGSTFGGNPLA  292 (402)
T ss_pred             CCCHHHHHEEHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             782022320236787315898986667873899


No 33 
>pfam02137 A_deamin Adenosine-deaminase (editase) domain. Adenosine deaminases acting on RNA (ADARs) can deaminate adenosine to form inosine. In long double-stranded RNA, this process is non-specific; it occurs site-specifically in RNA transcripts. The former is important in defence against viruses, whereas the latter may affect splicing or untranslated regions. They are primarily nuclear proteins, but a longer isoform of ADAR1 is found predominantly in the cytoplasm. The region described in this family includes the catalytic domain, which has three active site sequence motifs characteristic of ADARs, each containing a cysteine or histidine that binds zinc.
Probab=50.34  E-value=13  Score=18.51  Aligned_cols=34  Identities=41%  Similarity=0.561  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHHHHC----------------------CCCCCC---CEEEEECCCCCHH
Q ss_conf             251134456666414----------------------885454---1168861677688
Q gi|255764464|r   52 AHAEILAIRMGCRIL----------------------SQEILP---EVDLYVTLEPCTM   85 (149)
Q Consensus        52 ~HAEi~ai~~a~~~~----------------------~~~~l~---~~tlYtTlEPC~M   85 (149)
                      .|||++|.+-..+.+                      +...|+   ..-||+|--||-=
T Consensus        24 ~HAEVlARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~~Lk~~v~lhlYiS~~PCGd   82 (325)
T pfam02137        24 CHAEILARRGFLRFLYEELLLLANGGDKESSIFEAEEGKFRLKPGVKLHLYISTAPCGD   82 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCEEEEEECCCCCCC
T ss_conf             45999999999999999999974589887078757998647569838999966688876


No 34 
>COG4827 Predicted transporter [General function prediction only]
Probab=43.08  E-value=20  Score=17.48  Aligned_cols=26  Identities=15%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf             85454116886167768898999860
Q gi|255764464|r   68 QEILPEVDLYVTLEPCTMCAAAISLA   93 (149)
Q Consensus        68 ~~~l~~~tlYtTlEPC~MC~~Ai~~a   93 (149)
                      ..|.++.+-..-.-|||-|.+|...+
T Consensus        99 ~~D~sK~~~~ais~PCPvCl~avavs  124 (239)
T COG4827          99 KSDVSKHTFLAISMPCPVCLGAVAVS  124 (239)
T ss_pred             CCCHHHCEEEEEECCCCHHHHHHHHH
T ss_conf             76312301478855870788999999


No 35 
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=41.50  E-value=17  Score=17.81  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=24.5

Q ss_pred             HHHHCCCCCEEEEEEECCE--EEEEE--ECCCCCCCCCCCC
Q ss_conf             8875799808999983890--99987--3473544886425
Q gi|255764464|r   17 NAALRNEIPVGAVAVLNNK--IISRA--GNRNRELKDVTAH   53 (149)
Q Consensus        17 ~a~~~g~~PvGaviv~~g~--ii~~g--~N~~~~~~d~t~H   53 (149)
                      ||+.-|=.||||||-+++-  ++-=|  .|.+-=.+||.+=
T Consensus       274 KALsGGv~PiSa~la~~dim~vl~PGPF~HGSTfGGNPLAc  314 (426)
T TIGR01885       274 KALSGGVYPISAVLADDDIMSVLKPGPFEHGSTFGGNPLAC  314 (426)
T ss_pred             HHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCHHHH
T ss_conf             23458946224366646401211764865677688757899


No 36 
>TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130   Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage.
Probab=40.97  E-value=8.3  Score=19.75  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             HHHHH-HHCCCCCEEEEEEE-CCEEEEEEECCC
Q ss_conf             99988-75799808999983-890999873473
Q gi|255764464|r   14 EAQNA-ALRNEIPVGAVAVL-NNKIISRAGNRN   44 (149)
Q Consensus        14 ~A~~a-~~~g~~PvGaviv~-~g~ii~~g~N~~   44 (149)
                      +|+.. ......|||||.++ .|.|+.  ||+.
T Consensus        16 la~m~~A~~d~LpfGAiqlD~~G~I~~--YN~a   46 (126)
T TIGR02373        16 LARMGDAQLDSLPFGAIQLDGSGRILK--YNAA   46 (126)
T ss_pred             HCCCCCCCCCCCCCCEEEECCCCCHHH--HHCC
T ss_conf             326898642255410488669883021--1011


No 37 
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication.  RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=40.85  E-value=31  Score=16.25  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             CEEEEEEECC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             0899998389-09998734735448864251134456666414885454116886167
Q gi|255764464|r   25 PVGAVAVLNN-KIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLE   81 (149)
Q Consensus        25 PvGaviv~~g-~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlE   81 (149)
                      -.|.++..++ .+....... . ......+||+.||..+.+..........++||--.
T Consensus        16 G~g~v~~~~~~~~~~~~~~~-~-~~~s~~~aEl~Al~~al~~~~~~~~~~i~i~tDS~   71 (130)
T cd06222          16 GAGVVLRDPGGEVLLSGGLL-G-GNTTNNRAELLALIEALELALELGGKKVNIYTDSQ   71 (130)
T ss_pred             EEEEEEEECCCCEEEEEEEC-C-CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf             99999998995189997503-7-88652999999999999999868997799995569


No 38 
>pfam02600 DsbB Disulfide bond formation protein DsbB. This family consists of disulfide bond formation protein DsbB from bacteria. The DsbB protein oxidizes the periplasmic protein DsbA which in turn oxidizes cysteines in other periplasmic proteins in order to make disulfide bonds. DsbB acts as a redox potential transducer across the cytoplasmic membrane and is an integral membrane protein. DsbB posses six cysteines four of which are necessary for it proper function in vivo.
Probab=38.58  E-value=12  Score=18.71  Aligned_cols=11  Identities=45%  Similarity=1.174  Sum_probs=8.1

Q ss_pred             ECCCCCHHHHH
Q ss_conf             61677688989
Q gi|255764464|r   78 VTLEPCTMCAA   88 (149)
Q Consensus        78 tTlEPC~MC~~   88 (149)
                      --++||++|-.
T Consensus        32 ~gl~PC~LCi~   42 (159)
T pfam02600        32 LGLEPCPLCIY   42 (159)
T ss_pred             CCCCCCHHHHH
T ss_conf             38888565999


No 39 
>KOG1774 consensus
Probab=37.33  E-value=24  Score=16.96  Aligned_cols=35  Identities=14%  Similarity=0.332  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHH--HCCCCCEEEEEEECCEEEEE
Q ss_conf             999999999999887--57998089999838909998
Q gi|255764464|r    5 NVFMSCALEEAQNAA--LRNEIPVGAVAVLNNKIISR   39 (149)
Q Consensus         5 ~~~M~~A~~~A~~a~--~~g~~PvGaviv~~g~ii~~   39 (149)
                      +.||.+.++.|.+-.  ..+..|.|-++.++|.|-..
T Consensus        47 DEyMNvVlD~aeev~~k~~~rk~lGRilLKGDnItli   83 (88)
T KOG1774          47 DEYMNLVLDDAEEVHSKTKSRKELGRILLKGDNITLI   83 (88)
T ss_pred             HHHHHHHHCCHHHCCCCCCCCCCCCCEEECCCCEEEE
T ss_conf             8845531011532022135777013189738738999


No 40 
>pfam09930 DUF2162 Predicted transporter (DUF2162). Members of this family of bacterial proteins are thought to be membrane transporters, but their exact function has not, as yet, been elucidated.
Probab=31.67  E-value=32  Score=16.19  Aligned_cols=25  Identities=20%  Similarity=0.515  Sum_probs=17.4

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf             5454116886167768898999860
Q gi|255764464|r   69 EILPEVDLYVTLEPCTMCAAAISLA   93 (149)
Q Consensus        69 ~~l~~~tlYtTlEPC~MC~~Ai~~a   93 (149)
                      ++.+..|-..=.=|||-|.+|+..|
T Consensus        94 kd~s~~t~la~~~PCPvCl~A~~~S  118 (228)
T pfam09930        94 KDVSKRTFLAMSAPCPVCLGAVILS  118 (228)
T ss_pred             CCCCCCHHEEEECCCHHHHHHHHHH
T ss_conf             8887512303546870778999999


No 41 
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation.  Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet.  Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure.  Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=31.07  E-value=7.3  Score=20.06  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHCC-CCCEEEEEEECCEEEEEE
Q ss_conf             999999999999887579-980899998389099987
Q gi|255764464|r    5 NVFMSCALEEAQNAALRN-EIPVGAVAVLNNKIISRA   40 (149)
Q Consensus         5 ~~~M~~A~~~A~~a~~~g-~~PvGaviv~~g~ii~~g   40 (149)
                      +.||.+.++.|.+-...+ ..+.|.++++.+.|+..+
T Consensus        31 D~~mNLVLdda~E~~~~~~~~~lG~~viRG~sVv~i~   67 (72)
T cd01719          31 DPFMNLVLDDAVEVNSGGEKNNIGMVVIRGNSIVMLE   67 (72)
T ss_pred             CCCCEEEEEEEEEECCCCCEEECCEEEECCCEEEEEE
T ss_conf             7420277230588415797007028999789899997


No 42 
>KOG1783 consensus
Probab=30.32  E-value=47  Score=15.22  Aligned_cols=35  Identities=17%  Similarity=0.340  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCC--EEEEEEECCEEEEEE
Q ss_conf             999999999999887579980--899998389099987
Q gi|255764464|r    5 NVFMSCALEEAQNAALRNEIP--VGAVAVLNNKIISRA   40 (149)
Q Consensus         5 ~~~M~~A~~~A~~a~~~g~~P--vGaviv~~g~ii~~g   40 (149)
                      +-||.+|++.+..-. .|..|  +|.+.+++..|+-.+
T Consensus        37 DgymNiaLe~tee~~-ngql~n~ygdaFirGnnVlyIs   73 (77)
T KOG1783          37 DGYMNIALESTEEYV-NGQLKNKYGDAFIRGNNVLYIS   73 (77)
T ss_pred             HHHHHHHHHHHHHHH-CCCCCCCCCCEEECCCCEEEEE
T ss_conf             447788888789986-6744231122366266079997


No 43 
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal 
Probab=29.46  E-value=40  Score=15.62  Aligned_cols=29  Identities=21%  Similarity=0.106  Sum_probs=23.0

Q ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             98734735448864251134456666414
Q gi|255764464|r   38 SRAGNRNRELKDVTAHAEILAIRMGCRIL   66 (149)
Q Consensus        38 ~~g~N~~~~~~d~t~HAEi~ai~~a~~~~   66 (149)
                      |...|+.+...|+..|.++-++++..+.+
T Consensus       108 G~dLNR~w~~p~~~~~P~i~~~k~li~~~  136 (261)
T cd06908         108 GHDLNRHWHDPSPWAHPTLHAVKNLLKEL  136 (261)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             89868687998945297999999999999


No 44 
>PRK13907 rnhA ribonuclease H; Provisional
Probab=29.35  E-value=49  Score=15.12  Aligned_cols=57  Identities=12%  Similarity=0.033  Sum_probs=26.2

Q ss_pred             HHCCCC-C--EEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             757998-0--89999838909998734735448864251134456666414885454116886
Q gi|255764464|r   19 ALRNEI-P--VGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYV   78 (149)
Q Consensus        19 ~~~g~~-P--vGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYt   78 (149)
                      .++|++ |  .|.+|..++.++..+.--...+.|   -||..|+-.+.+..-....+...+|+
T Consensus         9 asrgNPG~ag~Gv~i~~~~~~~~~~~~lg~~TNN---~AEy~Ali~gL~~a~~~~~~~l~i~~   68 (128)
T PRK13907          9 ASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNH---EAEYHALLAALKYCTEHNYNIVSFRT   68 (128)
T ss_pred             CCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCH---HHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             4799997706999999098679998614875577---99999999999999976998799982


No 45 
>KOG2777 consensus
Probab=28.48  E-value=50  Score=15.03  Aligned_cols=33  Identities=42%  Similarity=0.554  Sum_probs=21.0

Q ss_pred             CCCHHHHHHHHHHHC---------------------CC-CCCC---CEEEEECCCCCH
Q ss_conf             251134456666414---------------------88-5454---116886167768
Q gi|255764464|r   52 AHAEILAIRMGCRIL---------------------SQ-EILP---EVDLYVTLEPCT   84 (149)
Q Consensus        52 ~HAEi~ai~~a~~~~---------------------~~-~~l~---~~tlYtTlEPC~   84 (149)
                      .||||.|.|-..+.+                     +. ..|+   -.-||+|--||-
T Consensus       243 cHAEIlARR~llRfLy~eL~l~~~~~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCG  300 (542)
T KOG2777         243 CHAEILARRGLLRFLYSELQLYNSEKKDSIFEKSKEGGKFTLKENVLFHLYISTSPCG  300 (542)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCCEEEEEECCCCCC
T ss_conf             1099999999999999999986344887056556888733337880899996479997


No 46 
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=28.38  E-value=49  Score=15.09  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             9999999998875799808999983
Q gi|255764464|r    8 MSCALEEAQNAALRNEIPVGAVAVL   32 (149)
Q Consensus         8 M~~A~~~A~~a~~~g~~PvGaviv~   32 (149)
                      +..|++.|.++.+.  -++||++|-
T Consensus       114 ~i~ai~~av~~ls~--~kiGALivi  136 (247)
T COG1624         114 LIDAIEKAVKGLSG--RKIGALIVI  136 (247)
T ss_pred             HHHHHHHHHHHHCC--CCCEEEEEE
T ss_conf             99999999985257--861379999


No 47 
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=28.09  E-value=51  Score=14.99  Aligned_cols=18  Identities=22%  Similarity=0.326  Sum_probs=14.2

Q ss_pred             CEEEEEEECCEEEEEEEC
Q ss_conf             089999838909998734
Q gi|255764464|r   25 PVGAVAVLNNKIISRAGN   42 (149)
Q Consensus        25 PvGaviv~~g~ii~~g~N   42 (149)
                      -|||||+++|+||-.-.+
T Consensus         2 ~v~~ii~~~~kvLL~~R~   19 (122)
T cd04673           2 AVGAVVFRGGRVLLVRRA   19 (122)
T ss_pred             EEEEEEEECCEEEEEEEC
T ss_conf             899999989999999969


No 48 
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=27.96  E-value=24  Score=17.00  Aligned_cols=10  Identities=50%  Similarity=1.218  Sum_probs=7.5

Q ss_pred             CCCCCHHHHH
Q ss_conf             1677688989
Q gi|255764464|r   79 TLEPCTMCAA   88 (149)
Q Consensus        79 TlEPC~MC~~   88 (149)
                      -.|||++|..
T Consensus        38 g~~PC~LC~~   47 (170)
T COG1495          38 GLEPCPLCLY   47 (170)
T ss_pred             CCCCCHHHHH
T ss_conf             8887197999


No 49 
>KOG1228 consensus
Probab=27.31  E-value=30  Score=16.34  Aligned_cols=15  Identities=33%  Similarity=0.395  Sum_probs=12.2

Q ss_pred             CCCEEEEECCCCCHH
Q ss_conf             541168861677688
Q gi|255764464|r   71 LPEVDLYVTLEPCTM   85 (149)
Q Consensus        71 l~~~tlYtTlEPC~M   85 (149)
                      -.||.||+|+.||..
T Consensus        73 qgg~WLyVTHd~~a~   87 (256)
T KOG1228          73 QGGCWLYVTHDLCAK   87 (256)
T ss_pred             CCCEEEEEECCCCHH
T ss_conf             774599995560010


No 50 
>KOG1682 consensus
Probab=24.72  E-value=59  Score=14.62  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEE-ECCEEEEEEECCCCCCCCC--CCCCHHH
Q ss_conf             999999999887579980899998-3890999873473544886--4251134
Q gi|255764464|r    8 MSCALEEAQNAALRNEIPVGAVAV-LNNKIISRAGNRNRELKDV--TAHAEIL   57 (149)
Q Consensus         8 M~~A~~~A~~a~~~g~~PvGaviv-~~g~ii~~g~N~~~~~~d~--t~HAEi~   57 (149)
                      |-.+++-+-.. +..+.-+-+||+ .+|+|-+.|||..+-..+|  --|||+-
T Consensus        60 M~~~Lq~~ll~-d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevF  111 (287)
T KOG1682          60 MMCALQDALLK-DKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVF  111 (287)
T ss_pred             HHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHH
T ss_conf             99999999851-24446515999935885224654577762475520789999


No 51 
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310   These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=24.29  E-value=60  Score=14.57  Aligned_cols=69  Identities=19%  Similarity=0.137  Sum_probs=36.4

Q ss_pred             CEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH-HHHHHHHCCCCEEEEEEC
Q ss_conf             0899998389099987347354488642511344566664148854541168861677688-989998608885999711
Q gi|255764464|r   25 PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTM-CAAAISLARIRRLYYGAS  103 (149)
Q Consensus        25 PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~M-C~~Ai~~agI~rVvyg~~  103 (149)
                      =||+|+|.||+||..=+..++    |  |-++-.=-+..--+.+..+.++       |=.. |+.-|+ .-+.--||=|.
T Consensus        22 qiGiV~v~DgeIv~~f~T~VN----P--~~~~pp~I~eLTGisd~~l~~A-------P~F~qVA~~i~-~~l~D~iFVAH   87 (944)
T TIGR01407        22 QIGIVLVEDGEIVDTFATDVN----P--NEPIPPFIQELTGISDEQLKQA-------PYFSQVAQEIY-DLLEDGIFVAH   87 (944)
T ss_pred             EEEEEEEECCCEEEECCCCCC----C--CCCCCCHHHHHCCCCHHHHCCC-------CCHHHHHHHHH-HHHCCCEEEEE
T ss_conf             998899855814320126778----8--9877611454228776864048-------88879999999-87429727761


Q ss_pred             CCCC
Q ss_conf             7988
Q gi|255764464|r  104 NPKG  107 (149)
Q Consensus       104 d~~~  107 (149)
                      |-++
T Consensus        88 NV~F   91 (944)
T TIGR01407        88 NVHF   91 (944)
T ss_pred             CHHC
T ss_conf             0150


No 52 
>pfam05988 DUF899 Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.
Probab=23.76  E-value=23  Score=17.13  Aligned_cols=14  Identities=14%  Similarity=0.199  Sum_probs=10.1

Q ss_pred             CCCCHHHHHHHHHC
Q ss_conf             67768898999860
Q gi|255764464|r   80 LEPCTMCAAAISLA   93 (149)
Q Consensus        80 lEPC~MC~~Ai~~a   93 (149)
                      -|||++|+..+-+.
T Consensus        82 ~~~C~gCS~~~D~~   95 (211)
T pfam05988        82 EAGCPGCSFLADHF   95 (211)
T ss_pred             CCCCCCCHHHHHCC
T ss_conf             89999722245275


No 53 
>PRK10811 rne ribonuclease E; Reviewed
Probab=23.70  E-value=19  Score=17.57  Aligned_cols=17  Identities=12%  Similarity=0.159  Sum_probs=12.0

Q ss_pred             CCEEEEECCCCCHHHHH
Q ss_conf             41168861677688989
Q gi|255764464|r   72 PEVDLYVTLEPCTMCAA   88 (149)
Q Consensus        72 ~~~tlYtTlEPC~MC~~   88 (149)
                      .-.-.-++.++||.|.|
T Consensus       393 rpSL~es~~~~CP~C~G  409 (1063)
T PRK10811        393 SPSLGESSHHVCPRCSG  409 (1063)
T ss_pred             CHHHHHHCCCCCCCCCC
T ss_conf             14457542774888877


No 54 
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=23.40  E-value=29  Score=16.50  Aligned_cols=29  Identities=14%  Similarity=0.307  Sum_probs=19.2

Q ss_pred             HHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             4566664148854541168861677688989
Q gi|255764464|r   58 AIRMGCRILSQEILPEVDLYVTLEPCTMCAA   88 (149)
Q Consensus        58 ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~   88 (149)
                      ||.+|.+++  ..++-|--+++-+||.-|+-
T Consensus        46 al~~a~~~i--~~C~~C~~~te~d~C~ICsd   74 (198)
T COG0353          46 ALLEAKENI--KHCSVCGNLTESDPCDICSD   74 (198)
T ss_pred             HHHHHHHCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf             999999738--63575678288986767698


No 55 
>pfam01235 Na_Ala_symp Sodium:alanine symporter family.
Probab=21.45  E-value=61  Score=14.54  Aligned_cols=18  Identities=6%  Similarity=0.292  Sum_probs=15.2

Q ss_pred             CCHHHHHHHHHHHHHHHC
Q ss_conf             218999999899988409
Q gi|255764464|r  132 ISEQRSRQIIQDFFKERR  149 (149)
Q Consensus       132 vl~ee~~~Ll~~ff~~kR  149 (149)
                      .|..+..++++|||+|+|
T Consensus       386 lL~~~v~~~~kdY~~q~k  403 (415)
T pfam01235       386 LLSKVAYEALKDYERQLK  403 (415)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             987999999999999996


No 56 
>KOG3752 consensus
Probab=21.22  E-value=49  Score=15.12  Aligned_cols=31  Identities=16%  Similarity=0.092  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             5113445666641488545411688616776
Q gi|255764464|r   53 HAEILAIRMGCRILSQEILPEVDLYVTLEPC   83 (149)
Q Consensus        53 HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC   83 (149)
                      -||+.|+..|.++.......+.+|.|+.|==
T Consensus       258 rAEl~Av~~ALkka~~~~~~kv~I~TDS~~~  288 (371)
T KOG3752         258 RAELIAAIEALKKARSKNINKVVIRTDSEYF  288 (371)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
T ss_conf             9999999999999984478747999466999


No 57 
>KOG1427 consensus
Probab=20.76  E-value=71  Score=14.14  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=14.0

Q ss_pred             EEECCEEEEEEECCCCCCCCCCCCCHH
Q ss_conf             983890999873473544886425113
Q gi|255764464|r   30 AVLNNKIISRAGNRNRELKDVTAHAEI   56 (149)
Q Consensus        30 iv~~g~ii~~g~N~~~~~~d~t~HAEi   56 (149)
                      +.+.|.+++-|+|+.-+.+-..+|+|+
T Consensus       125 ltdtG~v~afGeNK~GQlGlgn~~~~v  151 (443)
T KOG1427         125 LTDTGQVLAFGENKYGQLGLGNAKNEV  151 (443)
T ss_pred             EECCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             913775787216644541546544543


No 58 
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478    MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process.
Probab=20.07  E-value=55  Score=14.79  Aligned_cols=63  Identities=16%  Similarity=0.129  Sum_probs=36.9

Q ss_pred             HHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             75799808999983890999873473544886425113445666641488545411688616776889899
Q gi|255764464|r   19 ALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAA   89 (149)
Q Consensus        19 ~~~g~~PvGaviv~~g~ii~~g~N~~~~~~d~t~HAEi~ai~~a~~~~~~~~l~~~tlYtTlEPC~MC~~A   89 (149)
                      +.+-..|.||.|+|.|==||...=. .  .=|+.-++++.|-.+.....+     .-|-=|.=-||.|-..
T Consensus        30 LHERS~P~GAM~~DHGPDvG~~aP~-F--~l~~f~G~~V~iG~~~a~~R~-----~LLMFTaPsCPvC~KL   92 (189)
T TIGR02661        30 LHERSSPLGAMITDHGPDVGDAAPI-F--NLPDFDGEPVRIGGSIALGRP-----TLLMFTAPSCPVCDKL   92 (189)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCE-E--CCCCCCCCEEEECCCCCCCCC-----EEEEECCCCCCHHHHH
T ss_conf             2203574213020258874555871-0--576667864561175567775-----0354438888532243


Done!