RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str. psy62] (149 letters) >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} (A:) Length = 171 Score = 113 bits (282), Expect = 1e-26 Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 F+ AL EA+ A + E+PVGA+ V +IIS+A N ELKD TAHAE+LAI+ CR L Sbjct: 26 FLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 85 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 + + L +LYVTLEPC MC+ A+ L+RI ++ + A + K GG+ + T +H Sbjct: 86 NTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRV 145 Query: 127 EIYPGISEQRSRQIIQDFFKERR 149 + E+ + +++ +FFK+ R Sbjct: 146 KWEYYPLEE-ASELLSEFFKKLR 167 >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} (A:) Length = 168 Score = 111 bits (278), Expect = 4e-26 Identities = 57/143 (39%), Positives = 77/143 (53%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 +M AL A+ A E+PVGAV V NN++I NR D TAHAEI+A+R G ++ Sbjct: 12 WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 L + LYVTLEPC MCA A+ +RI R+ +GA + K G + +H Sbjct: 72 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRV 131 Query: 127 EIYPGISEQRSRQIIQDFFKERR 149 EI GI ++ DFF+ RR Sbjct: 132 EITEGILADECAALLSDFFRMRR 154 >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} (A:) Length = 159 Score = 109 bits (273), Expect = 2e-25 Identities = 54/143 (37%), Positives = 82/143 (57%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 FM+ A+EEA+ AA E+P+GA+ ++++I+RA N L+ TAHAE +AI ++L Sbjct: 10 FMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL 69 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 L LYVTLEPC MCA I ++RI R+ YGA +PKGG + + +H Sbjct: 70 GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRA 129 Query: 127 EIYPGISEQRSRQIIQDFFKERR 149 + G+ ++ ++ FFK R Sbjct: 130 IVDKGVLKEACSTLLTTFFKNLR 152 >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens} (A:) Length = 189 Score = 106 bits (264), Expect = 2e-24 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 8/151 (5%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 +M A+ A+ A E+PVG + V NN+++ + N + K+ T HAE++AI Sbjct: 29 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 Query: 67 SQ------EILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120 Q E+ LYVT+EPC MCAAA+ L +I + YG N + GG + + Sbjct: 89 RQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 148 Query: 121 --TCHHSPEIYPGISEQRSRQIIQDFFKERR 149 + PG + + ++++ F+K+ Sbjct: 149 LPNTGRPFQCIPGYRAEEAVEMLKTFYKQEN 179 >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} (A:) Length = 144 Score = 103 bits (257), Expect = 1e-23 Identities = 86/144 (59%), Positives = 111/144 (77%) Query: 1 MKKGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIR 60 M + FM AL EA++A R+E+P+GAV VL+ ++I+R+GNR REL DVTAHAEI IR Sbjct: 1 MAERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIR 60 Query: 61 MGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLA 120 M C L QE LP DLYVTLEPCTMCAAAIS ARIRRLYYGA +PKGG +E+G +F++ Sbjct: 61 MACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQP 120 Query: 121 TCHHSPEIYPGISEQRSRQIIQDF 144 TCHH+P++Y G++E S +I++ F Sbjct: 121 TCHHAPDVYSGLAESESAEILRQF 144 >2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} (A:) Length = 197 Score = 100 bits (250), Expect = 8e-23 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 11/154 (7%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAV--LNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 M LE + + P A + +I+ NR + AHAEILA+ + Sbjct: 31 RMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQA 90 Query: 65 IL-----SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPK----GGGIENGTQ 115 L S + LP +L + EPC MC A+ + +R L A + G + Sbjct: 91 KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPE 150 Query: 116 FYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 + + G+ + +++++ Sbjct: 151 NWMGGLEARGITVTTGLLRDAACALLREYNACNG 184 >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} (A:) Length = 179 Score = 99.2 bits (246), Expect = 2e-22 Identities = 53/143 (37%), Positives = 78/143 (54%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRIL 66 FM AL+E++ + + EIP+G V V + +II R N E HAE++AI Sbjct: 19 FMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 78 Query: 67 SQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHHSP 126 L + L+VT+EPC MC+ AI LARI + YGASN K GG+++ Q T +H Sbjct: 79 GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRV 138 Query: 127 EIYPGISEQRSRQIIQDFFKERR 149 ++ G+ I+Q FF++ R Sbjct: 139 QVERGLLAADCANIMQTFFRQGR 161 >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} (A:) Length = 178 Score = 97.3 bits (241), Expect = 9e-22 Identities = 24/158 (15%), Positives = 41/158 (25%), Gaps = 20/158 (12%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHA------------ 54 FM+ A AQ + N + NKI+ N Sbjct: 16 FMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTK 75 Query: 55 ---EILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIE 111 A + + +YV L PC CA I A I+ + + + Sbjct: 76 YPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEA 135 Query: 112 NGTQFYTLATCHHSPEIYPGISEQRSRQIIQDFFKERR 149 + + + + +I+ DF Sbjct: 136 TAARLL-----FNMAGVTFRKFIPKCSKIVIDFDSINS 168 >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} (A:) Length = 161 Score = 94.1 bits (233), Expect = 8e-21 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 11/145 (7%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVL--NNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 M A EEA +P+G + + ++ R N + T H EI + C Sbjct: 17 GMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLEN-CG 75 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 L ++ + LY TL PC MC AI + I R G + E Sbjct: 76 RLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGE--------KYLQT 127 Query: 125 SPEIYPGISEQRSRQIIQDFFKERR 149 + ++R ++I++ F ER Sbjct: 128 RGHEVVVVDDERCKKIMKQFIDERP 152 >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} (A:1-154) Length = 154 Score = 91.7 bits (227), Expect = 3e-20 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%) Query: 7 FMSCALEEAQNAALRN--EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 F A+E A+ R PVGAV V + +II+ + A A + G Sbjct: 17 FXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGED 76 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 + ++ ++ C I + I+ + G +P +F +H Sbjct: 77 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKF-----RNH 131 Query: 125 SPEIYPGISEQRSRQIIQDFFK 146 E+ G+ E+ +++ + F Sbjct: 132 GIEVIEGVLEEEVKKLCEFFIT 153 >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:1-45,A:102-193) Length = 137 Score = 88.7 bits (220), Expect = 3e-19 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 13/147 (8%) Query: 3 KGNVFMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMG 62 K + + A +Q + + VGAV N +IIS N + HAE+ AI Sbjct: 2 KASTVLQIAYLVSQESKCCSW-KVGAVIEKNGRIISTGYNGSPA---GEIHAELNAILFA 57 Query: 63 CRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATC 122 S + +YVTL PC CA AI+ + I++L Y + K Sbjct: 58 AENGSS--IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP--GWDDILR---- 109 Query: 123 HHSPEIYPGISEQRSRQIIQDFFKERR 149 + E++ + ++ ++ + E Sbjct: 110 NAGIEVF-NVPKKNLNKLNWENINEFC 135 >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} (A:1-110) Length = 110 Score = 87.9 bits (217), Expect = 5e-19 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 7 FMSCALEEAQNAALR-NEIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCRI 65 F+ A+ A P GAV V + II+ N D TAHAE+ AIR C++ Sbjct: 14 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 73 Query: 66 LSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGA 102 L L + LY + EPC MC AI AR + ++Y A Sbjct: 74 LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAA 110 >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* (A:) Length = 184 Score = 83.3 bits (205), Expect = 1e-17 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 25/149 (16%) Query: 7 FMSCALEEAQNAALRNEIPVGAVAVLNNKIISRAGNRNRELKDVTA-------------- 52 FM+ A ++ + N VGAV V NN+II+ N D Sbjct: 45 FMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRT 103 Query: 53 -HAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIE 111 HAE+ A+ + ++YVT PC C A+ A ++++ Y + Sbjct: 104 VHAEMNALIQCAK--EGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAI 161 Query: 112 NGTQFYTLATCHHSPEIYPGISEQRSRQI 140 E + Sbjct: 162 ELMT-------QKEVEYVQHDVPRVKLGE 183 >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} (A:1-146) Length = 146 Score = 82.2 bits (202), Expect = 3e-17 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 9/136 (6%) Query: 7 FMSCALEEAQNAALRNEIP--VGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 +M AL+ A+ + E VGAV V + +I+ + HA +A Sbjct: 17 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 76 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 ++ CA I + I+R++ +P G Sbjct: 77 ADIYVT---LEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EA 129 Query: 125 SPEIYPGISEQRSRQI 140 E+ GI ++ ++ Sbjct: 130 GIEVREGILADQAERL 145 >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* (A:1-162) Length = 162 Score = 79.1 bits (194), Expect = 2e-16 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 9/136 (6%) Query: 7 FMSCALEEAQNAALRN--EIPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64 + + AL+ AQ VG V V + +I+ ++ HA A Sbjct: 33 YXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGEKAKG 92 Query: 65 ILSQEILPEVDLYVTLEPCTMCAAAISLARIRRLYYGASNPKGGGIENGTQFYTLATCHH 124 + ++ C A+ A + R+ +P G Sbjct: 93 ATAYV---TLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQ----QA 145 Query: 125 SPEIYPGISEQRSRQI 140 ++ G+ + Q+ Sbjct: 146 GIDVSHGLXXSEAEQL 161 >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} (A:) Length = 190 Score = 27.8 bits (62), Expect = 0.68 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 11/64 (17%) Query: 48 KDVTAHAEILAIRMGCRILSQEILPEVDLYVTLEPCTMCAAAIS--LARIR--------- 96 + AHAE + V YV+ PC CA I L++ + Sbjct: 59 EHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVG 118 Query: 97 RLYY 100 RL+ Sbjct: 119 RLFM 122 >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:131-329) Length = 199 Score = 25.2 bits (54), Expect = 3.5 Identities = 3/38 (7%), Positives = 13/38 (34%) Query: 24 IPVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRM 61 + + ++I+ + V+ E++ + Sbjct: 28 LMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFL 65 >2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus} (A:160-323) Length = 164 Score = 25.4 bits (56), Expect = 3.6 Identities = 5/30 (16%), Positives = 10/30 (33%) Query: 48 KDVTAHAEILAIRMGCRILSQEILPEVDLY 77 K I +G +P++ L+ Sbjct: 49 KHTRFEKRIFEETLGLTFDPHGRMPDLVLH 78 >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:395-516) Length = 122 Score = 25.1 bits (55), Expect = 3.8 Identities = 4/16 (25%), Positives = 9/16 (56%) Query: 38 SRAGNRNRELKDVTAH 53 S++ R L+++ H Sbjct: 11 SKSAKYYRLLQEIHYH 26 >1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens} (A:1-165,A:237-351) Length = 280 Score = 24.8 bits (54), Expect = 4.9 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%) Query: 38 SRAGNRNRELKDVTAHAEILAIRMGCRILSQEIL 71 +R L D HAEI++ R R L ++ Sbjct: 83 EYMSDRGLALND--CHAEIISRRSLLRFLYTQLE 114 >3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, X-RAY, zinc, alternative splicing; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* (A:) Length = 207 Score = 24.4 bits (53), Expect = 7.0 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 12/60 (20%) Query: 53 HAEILAIRMGC-RILSQEILPEVDLYVTLEPCTMCAAAIS--LAR---------IRRLYY 100 HAE+ + + L + V + + PC CA ++ +++ R+Y Sbjct: 80 HAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYD 139 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.135 0.394 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,156,899 Number of extensions: 48623 Number of successful extensions: 121 Number of sequences better than 10.0: 1 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 25 Length of query: 149 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 68 Effective length of database: 2,217,844 Effective search space: 150813392 Effective search space used: 150813392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.2 bits)