HHsearch alignment for GI: 255764465 and conserved domain: TIGR00773
>TIGR00773 NhaA Na+/H+ antiporter NhaA; InterPro: IPR004670 The Escherichia coli NhaA Na+:H+ Antiporter (NhaA) protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. ; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=983.12 Aligned_cols=369 Identities=40% Similarity=0.752 Sum_probs=353.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH---HHHCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9853215579999999999998338-7124333---431124335----6769999876799999999999999998648
Q gi|255764465|r 7 FLYRDNFTGILLISTTFITMILANI-SFSSAYY---FDALEYKIA----NLTLRDWVNDILMILYFFMIGLELKHELIHG 78 (382)
Q Consensus 7 F~~~e~~~gilLl~aa~~Al~~ANs-~~~~~y~---~~~~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~G 78 (382)
T Consensus 1 Ffk~es~GGIlL~~~A~~AM~~ANsG~l~~~Y~~~l~tp~~~~ig~~~~g~~~~~WInD~LMAvFFlLiGLEvKrELl~G 80 (415)
T TIGR00773 1 FFKSESAGGILLVIAAVLAMVIANSGALSESYQDFLHTPVSLQIGSFVIGKSLLHWINDGLMAVFFLLIGLEVKRELLEG 80 (415)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95552142299999999999985462011468898608610355003344422546757899999999988998988521
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 67899998999999877889999998982379800035045533773789999999842788899999999999875447
Q gi|255764465|r 79 ELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFS 158 (382)
Q Consensus 79 eLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlg 158 (382)
T Consensus 81 ~L~s~~~A~FP~IAAiGGM~~PaliY~~~n~~dP~~~~GwaIP~ATDIAFALGv~aLLgkrVP~~LKvFLlaLAiiDDLG 160 (415)
T TIGR00773 81 ALSSLKQAIFPVIAAIGGMIAPALIYLAFNANDPSAREGWAIPAATDIAFALGVLALLGKRVPLALKVFLLALAIIDDLG 160 (415)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 05532010351577763568999999997037841005766760778999999999835889736899999999985178
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99888864177666799999999999999986259861237899999999999712865678988886317678777894
Q gi|255764465|r 159 AIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSP 238 (382)
Q Consensus 159 aIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~ 238 (382)
T Consensus 161 aiViIALFYt~~Ls~~~L~~a~~~~~VL~~LN~~~v~~l~~Y~~vG~~LW~aVlkSGvHATlAgVi~gF~IPlK~~~g~~ 240 (415)
T TIGR00773 161 AIVIIALFYTSDLSVAALLVAAVAILVLALLNRLNVRKLIVYLLVGVILWFAVLKSGVHATLAGVIIGFAIPLKGKKGEK 240 (415)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 05887430036367999999999999999984542677889999999999999730178999999998632567888740
Q ss_pred C------------------------------------CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 0------------------------------------0003788763420443247879998851263246764787310
Q gi|255764465|r 239 S------------------------------------NRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISD 282 (382)
Q Consensus 239 ~------------------------------------~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~ 282 (382)
T Consensus 241 ~vellelGkryaetssGallske~~eilhsieekasal~sPl~~lEH~L~p~~ay~ILPLFAFANAGvSl~G~~~~~~~s 320 (415)
T TIGR00773 241 SVELLELGKRYAETSSGALLSKEQQEILHSIEEKASALQSPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSINGLTS 320 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEHHHHH
T ss_conf 36787753355432112455467789999888666775063676345550588999978888640570231203023563
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHHH
Q ss_conf 26999999986445589999999999617543899989999999999875589999998664068-7-257887655999
Q gi|255764465|r 283 PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFP-N-ANNLQEKAKIGI 360 (382)
Q Consensus 283 pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~-~-~~~~~~~aKlgI 360 (382)
T Consensus 321 ~l~Lgi~~GL~~GKPlGIf~f~~~a~kL~~a~lP~Gi~f~~I~av~~LcGIGFTMS~FissLAF~a~~~~~~~~~A~lgI 400 (415)
T TIGR00773 321 MLLLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKHIFAVGVLCGIGFTMSIFISSLAFGANVDEELDTYAKLGI 400 (415)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 56799999886036146889999999712003889862888899999950047899999876316665644899999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|255764465|r 361 ILSSVISIIYAYLVF 375 (382)
Q Consensus 361 L~~S~~aailG~~~l 375 (382)
T Consensus 401 L~GS~~sa~~Gy~~L 415 (415)
T TIGR00773 401 LLGSLISAILGYLYL 415 (415)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998509