HHsearch alignment for GI: 255764465 and conserved domain: TIGR00773

>TIGR00773 NhaA Na+/H+ antiporter NhaA; InterPro: IPR004670 The Escherichia coli NhaA Na+:H+ Antiporter (NhaA) protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. ; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=983.12  Aligned_cols=369  Identities=40%  Similarity=0.752  Sum_probs=353.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH---HHHCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9853215579999999999998338-7124333---431124335----6769999876799999999999999998648
Q gi|255764465|r    7 FLYRDNFTGILLISTTFITMILANI-SFSSAYY---FDALEYKIA----NLTLRDWVNDILMILYFFMIGLELKHELIHG   78 (382)
Q Consensus         7 F~~~e~~~gilLl~aa~~Al~~ANs-~~~~~y~---~~~~~~~~~----~~~l~~wvNDgLMaiFFf~vGLEiKrE~~~G   78 (382)
T Consensus         1 Ffk~es~GGIlL~~~A~~AM~~ANsG~l~~~Y~~~l~tp~~~~ig~~~~g~~~~~WInD~LMAvFFlLiGLEvKrELl~G   80 (415)
T TIGR00773         1 FFKSESAGGILLVIAAVLAMVIANSGALSESYQDFLHTPVSLQIGSFVIGKSLLHWINDGLMAVFFLLIGLEVKRELLEG   80 (415)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95552142299999999999985462011468898608610355003344422546757899999999988998988521


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67899998999999877889999998982379800035045533773789999999842788899999999999875447
Q gi|255764465|r   79 ELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFS  158 (382)
Q Consensus        79 eLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlg  158 (382)
T Consensus        81 ~L~s~~~A~FP~IAAiGGM~~PaliY~~~n~~dP~~~~GwaIP~ATDIAFALGv~aLLgkrVP~~LKvFLlaLAiiDDLG  160 (415)
T TIGR00773        81 ALSSLKQAIFPVIAAIGGMIAPALIYLAFNANDPSAREGWAIPAATDIAFALGVLALLGKRVPLALKVFLLALAIIDDLG  160 (415)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             05532010351577763568999999997037841005766760778999999999835889736899999999985178


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99888864177666799999999999999986259861237899999999999712865678988886317678777894
Q gi|255764465|r  159 AIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSP  238 (382)
Q Consensus       159 aIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~~~~~~~  238 (382)
T Consensus       161 aiViIALFYt~~Ls~~~L~~a~~~~~VL~~LN~~~v~~l~~Y~~vG~~LW~aVlkSGvHATlAgVi~gF~IPlK~~~g~~  240 (415)
T TIGR00773       161 AIVIIALFYTSDLSVAALLVAAVAILVLALLNRLNVRKLIVYLLVGVILWFAVLKSGVHATLAGVIIGFAIPLKGKKGEK  240 (415)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             05887430036367999999999999999984542677889999999999999730178999999998632567888740


Q ss_pred             C------------------------------------CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             0------------------------------------0003788763420443247879998851263246764787310
Q gi|255764465|r  239 S------------------------------------NRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISD  282 (382)
Q Consensus       239 ~------------------------------------~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~  282 (382)
T Consensus       241 ~vellelGkryaetssGallske~~eilhsieekasal~sPl~~lEH~L~p~~ay~ILPLFAFANAGvSl~G~~~~~~~s  320 (415)
T TIGR00773       241 SVELLELGKRYAETSSGALLSKEQQEILHSIEEKASALQSPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSINGLTS  320 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEHHHHH
T ss_conf             36787753355432112455467789999888666775063676345550588999978888640570231203023563


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHHH
Q ss_conf             26999999986445589999999999617543899989999999999875589999998664068-7-257887655999
Q gi|255764465|r  283 PIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFP-N-ANNLQEKAKIGI  360 (382)
Q Consensus       283 pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~-~-~~~~~~~aKlgI  360 (382)
T Consensus       321 ~l~Lgi~~GL~~GKPlGIf~f~~~a~kL~~a~lP~Gi~f~~I~av~~LcGIGFTMS~FissLAF~a~~~~~~~~~A~lgI  400 (415)
T TIGR00773       321 MLLLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKHIFAVGVLCGIGFTMSIFISSLAFGANVDEELDTYAKLGI  400 (415)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             56799999886036146889999999712003889862888899999950047899999876316665644899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|255764465|r  361 ILSSVISIIYAYLVF  375 (382)
Q Consensus       361 L~~S~~aailG~~~l  375 (382)
T Consensus       401 L~GS~~sa~~Gy~~L  415 (415)
T TIGR00773       401 LLGSLISAILGYLYL  415 (415)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999998509