Query gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 382 No_of_seqs 122 out of 896 Neff 4.8 Searched_HMMs 33803 Date Wed Jun 1 12:25:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764465.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1zcd_A Na(+)/H(+) antiporter 99.9 5.9E-21 1.7E-25 144.3 15.1 378 1-382 1-387 (388) 2 >2r6g_F Maltose transport syst 25.5 35 0.001 13.2 3.2 46 336-382 69-116 (117) 3 >1q90_G Cytochrome B6F complex 21.0 43 0.0013 12.7 3.7 30 282-311 3-32 (37) 4 >1vf5_G Protein PET G; photosy 19.7 46 0.0014 12.5 1.3 30 282-311 3-32 (37) 5 >1cii_A Colicin IA; bacterioci 11.5 76 0.0023 11.2 1.9 37 272-309 116-152 (169) 6 >3lsg_A Two-component response 9.5 63 0.0019 11.8 -0.4 11 124-134 16-26 (45) 7 >2jln_A MHP1; hydantoin, trans 9.4 91 0.0027 10.8 4.8 15 298-312 25-39 (152) 8 >2vt4_A BETA1 adrenergic recep 6.6 1.2E+02 0.0036 10.0 -0.0 31 138-168 40-70 (313) 9 >2k9p_A Pheromone alpha factor 5.8 1.4E+02 0.0043 9.6 3.5 33 281-313 16-48 (80) 10 >1ots_A Voltage-gated CLC-type 5.8 1.4E+02 0.0043 9.6 6.8 141 218-374 56-202 (212) No 1 >>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A (A:) Probab=99.87 E-value=5.9e-21 Score=144.29 Aligned_cols=378 Identities=38% Similarity=0.704 Sum_probs=309.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 95147898532155799999999999983387124333431124335--------6769999876799999999999999 Q gi|255764465|r 1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDILMILYFFMIGLELK 72 (382) Q Consensus 1 ~~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~~~~~~~~~--------~~~l~~wvNDgLMaiFFf~vGLEiK 72 (382) ||....+.+.+..-+++++.+.....+.......+.--....+.-.| +....++..+.-+.++.|..|+|++ T Consensus 1 ~~~~~~~~~~~~~i~~il~~~~~~~~l~~~~~lP~~~~~il~GillGp~~l~~~~~~~~~~~~~~lgl~~llF~~Gleld 80 (388) T 1zcd_A 1 MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVK 80 (388) T ss_dssp --------CCSSHHHHHHHHHHHHHHHHHHCSSSHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 90589988323168999999999999998797025689999706300332742356529999886799999999999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99864867899998999999877889999998982379800035045533773789999999842788899999999999 Q gi|255764465|r 73 HELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALT 152 (382) Q Consensus 73 rE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLA 152 (382) .+......+.....+.+.......+......|+..+....+..-.+++.++||.+-.+.++.-.+++.+..++..+..-+ T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~ 160 (388) T 1zcd_A 81 RELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA 160 (388) T ss_dssp HHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGGCCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 98744777746788988999971541878988751137887675478754750899999999964779848999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC Q ss_conf 87544799888864177666799999999999999986259861237899999999999712865678988886317678 Q gi|255764465|r 153 MIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDI 232 (382) Q Consensus 153 IvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~ 232 (382) +.||..+++...++++...+.....................+.+...+.......++...+.+.+..++.+..+..++.. T Consensus 161 ~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388) T 1zcd_A 161 IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK 240 (388) T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCCC T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC T ss_conf 97425646652000366433999999999999999999628770688988999999999970676477655666314665 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 77789400003788763420443247879998851263246764787310269999999864455899999999996175 Q gi|255764465|r 233 KNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGW 312 (382) Q Consensus 233 ~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~ 312 (382) .... ....++.++..++.........|.+...+.+....................+.++|.+++...++...+... T Consensus 241 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (388) T 1zcd_A 241 EKHG----RSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKL 316 (388) T ss_dssp GGGS----SCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTT T ss_pred CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEECCCEEEEEEEEHHHHHCCC T ss_conf 5578----997999999874005665566877640351335665224445578866742121705798745499887364 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 4389998999999999987558999999866406872-578876559999999999999999994147789 Q gi|255764465|r 313 GKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNA-NNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK 382 (382) Q Consensus 313 ~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~~~-~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk 382 (382) ...+.+.+|++...++..++.++.+++....++...- ++.....-..++..++++....-...|..+||+ T Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~s~~i~~~~~~~~~~~~~~~~ 387 (388) T 1zcd_A 317 AHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPS 387 (388) T ss_dssp TCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC--- T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 67999998899999999988999999999998558998677722699999999999999999997336899 No 2 >>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:64-99,F:249-268,F:454-514) Probab=25.53 E-value=35 Score=13.25 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=26.7 Q ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999866406872--578876559999999999999999994147789 Q gi|255764465|r 336 TMSLFLTLQAFPNA--NNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK 382 (382) Q Consensus 336 TmSLfIa~LAF~~~--~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk 382 (382) |++..+-+.+|++. .++-.++-+++++ .++..++..+.+|...||| T Consensus 69 tl~~yiY~~aF~~~~~~~~G~aSAiavIL-flIi~iv~~i~~r~~~k~e 116 (117) T 2r6g_F 69 LLVNYTYRIAFEGGGGQDFGLAAAIATLI-FLLVGALAIVNLKATRMKF 116 (117) T ss_dssp CHHHHHHHHHTSSSSCCCHHHHHHHHHHH-HHHHHHHHHC--------- T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC T ss_conf 99999999998514445689999999999-9999999999999983258 No 3 >>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} (G:) Probab=20.96 E-value=43 Score=12.70 Aligned_cols=30 Identities=30% Similarity=0.623 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 026999999986445589999999999617 Q gi|255764465|r 282 DPIVWGVMLGLFLGKQSGIFLFAFSTVKIG 311 (382) Q Consensus 282 ~pv~~gI~~gL~iGK~lGI~~~s~lavkl~ 311 (382) +|.-.||++||+-=...|.|..+|+--|.+ T Consensus 3 E~lL~GiVlGlipvTlaGlfv~AylQyrRg 32 (37) T 1q90_G 3 EPLLCGIVLGLVPVTIAGLFVTAYLQYLRG 32 (37) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 079865788437999999999999999853 No 4 >>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (G:) Probab=19.68 E-value=46 Score=12.54 Aligned_cols=30 Identities=30% Similarity=0.619 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 026999999986445589999999999617 Q gi|255764465|r 282 DPIVWGVMLGLFLGKQSGIFLFAFSTVKIG 311 (382) Q Consensus 282 ~pv~~gI~~gL~iGK~lGI~~~s~lavkl~ 311 (382) +|.-.||++||+-=...|.|..+|+--|.+ T Consensus 3 E~lL~GiVLGlipiTl~Glfv~AylQyrRg 32 (37) T 1vf5_G 3 EPLLDGLVLGLVFATLGGLFYAAYQQYKRP 32 (37) T ss_dssp ------CHHHHHHHHHHHHTHHHHHHTCC- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 068864789748999999999999998303 No 5 >>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:434-602) Probab=11.51 E-value=76 Score=11.23 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=22.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46764787310269999999864455899999999996 Q gi|255764465|r 272 ISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVK 309 (382) Q Consensus 272 l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavk 309 (382) ++....+...+.++. .+++..+|-|+||.++..+..- T Consensus 116 ~Es~~ag~~as~l~a-~~fs~~~gt~igi~g~ali~a~ 152 (169) T 1cii_A 116 TETIIAGNAATALVA-LVFSILTGSALGIIGYGLLMAV 152 (169) T ss_dssp HTTTBTTCBHHHHHH-HHHHHHTTCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHH T ss_conf 999998458999999-9999984246899999999999 No 6 >>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:1-45) Probab=9.51 E-value=63 Score=11.75 Aligned_cols=11 Identities=64% Similarity=0.860 Sum_probs=4.1 Q ss_pred CCHHHHHHHHH Q ss_conf 73789999999 Q gi|255764465|r 124 TDIAFTLGILS 134 (382) Q Consensus 124 TDiAFalgvl~ 134 (382) ||++|.+++++ T Consensus 16 sd~~F~L~~La 26 (45) T 3lsg_A 16 TDSQFTLSVLS 26 (45) T ss_dssp TCTTCCHHHHH T ss_pred CCCCCCHHHHH T ss_conf 89998999999 No 7 >>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* (A:1-20,A:370-501) Probab=9.36 E-value=91 Score=10.76 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 899999999996175 Q gi|255764465|r 298 SGIFLFAFSTVKIGW 312 (382) Q Consensus 298 lGI~~~s~lavkl~~ 312 (382) .||++.-|..+|-+. T Consensus 25 ~GImi~DY~ivRk~~ 39 (152) T 2jln_A 25 AGIMISDYFLVRRRR 39 (152) T ss_dssp HHHHHHHHHTTSTTC T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999998227 No 8 >>2vt4_A BETA1 adrenergic receptor; GPCR, membrane, palmitate, transducer, antagonist bound form, integral membrane protein; HET: P32 SOG D10; 2.7A {Meleagris gallopavo} (A:) Probab=6.60 E-value=1.2e+02 Score=10.02 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=22.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 7888999999999998754479988886417 Q gi|255764465|r 138 PNIPSSLKIFFTALTMIDDFSAIAIMAIFYT 168 (382) Q Consensus 138 ~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs 168 (382) +|.....-.|+..||+.|.+.....+-..+. T Consensus 40 ~~l~t~~n~~i~nLAvaDll~~~~~~p~~~~ 70 (313) T 2vt4_A 40 QRLQTLTNLFITSLACADLVVGLLVVPFGAT 70 (313) T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHTHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8888667999999999999999999899999 No 9 >>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G- protein coupled receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae} (A:) Probab=5.78 E-value=1.4e+02 Score=9.57 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 102699999998644558999999999961754 Q gi|255764465|r 281 SDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWG 313 (382) Q Consensus 281 ~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~ 313 (382) .+.++.+|+.|--+|--.=-....|...|-+.. T Consensus 16 ~~~~~~aIv~GvriGa~~l~liilw~isk~kkT 48 (80) T 2k9p_A 16 NSTVTQAILFGVRSGAAALTLIVVWITSRSRKT 48 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCC T ss_pred HHHHHEEHEEHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 724230010012688999999999999636779 No 10 >>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} (A:31-242) Probab=5.77 E-value=1.4e+02 Score=9.56 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 67898888631767877789400003788763420443247879998851263246764787310269999999864455 Q gi|255764465|r 218 TTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQ 297 (382) Q Consensus 218 aTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~ 297 (382) +.+.+.+....+-...++...+......+-.+.-+....+...+.=.++..--.-++.+.+...-.+..|-..|-.+|| T Consensus 56 ~~~~~~~~~~~~~~~~~~~~g~g~~~i~~~~~~~~~~~~~~~~~~k~~~~~lt~~sG~s~G~egP~v~iGa~~g~~~~~- 134 (212) T 1ots_A 56 SAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD- 134 (212) T ss_dssp HHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH- T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH- T ss_conf 9999999999997417767889989999998178886508899999999999997277776755299999999999999- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999961754389998999999999987558------9999998664068725788765599999999999999 Q gi|255764465|r 298 SGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIG------FTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYA 371 (382) Q Consensus 298 lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIG------FTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG 371 (382) ..+++.+-..+.+...|.-||++ .|-.+|.-|....+ ....-+.=+.++++|.+|.... T Consensus 135 --------------~~~~~~~~~~~~l~~~G~aaglaa~f~aPlag~~f~~E~~~~~-~~~~~~~l~~~~ias~~a~~v~ 199 (212) T 1ots_A 135 --------------IFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ-FRYTLISIKAVFIGVIMSTIMY 199 (212) T ss_dssp --------------HTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCS-SSCCCCCHHHHHHHHHHHHHHH T ss_pred --------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH T ss_conf --------------8432406888899999999999887168258899998998620-0243458999999999988764 Q ss_pred HHH Q ss_conf 999 Q gi|255764465|r 372 YLV 374 (382) Q Consensus 372 ~~~ 374 (382) ..+ T Consensus 200 ~~~ 202 (212) T 1ots_A 200 RIF 202 (212) T ss_dssp HHH T ss_pred HHH T ss_conf 420 Done!