Query         gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 382
No_of_seqs    122 out of 896
Neff          4.8 
Searched_HMMs 33803
Date          Wed Jun  1 12:25:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764465.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1zcd_A Na(+)/H(+) antiporter   99.9 5.9E-21 1.7E-25  144.3  15.1  378    1-382     1-387 (388)
  2 >2r6g_F Maltose transport syst  25.5      35   0.001   13.2   3.2   46  336-382    69-116 (117)
  3 >1q90_G Cytochrome B6F complex  21.0      43  0.0013   12.7   3.7   30  282-311     3-32  (37)
  4 >1vf5_G Protein PET G; photosy  19.7      46  0.0014   12.5   1.3   30  282-311     3-32  (37)
  5 >1cii_A Colicin IA; bacterioci  11.5      76  0.0023   11.2   1.9   37  272-309   116-152 (169)
  6 >3lsg_A Two-component response   9.5      63  0.0019   11.8  -0.4   11  124-134    16-26  (45)
  7 >2jln_A MHP1; hydantoin, trans   9.4      91  0.0027   10.8   4.8   15  298-312    25-39  (152)
  8 >2vt4_A BETA1 adrenergic recep   6.6 1.2E+02  0.0036   10.0  -0.0   31  138-168    40-70  (313)
  9 >2k9p_A Pheromone alpha factor   5.8 1.4E+02  0.0043    9.6   3.5   33  281-313    16-48  (80)
 10 >1ots_A Voltage-gated CLC-type   5.8 1.4E+02  0.0043    9.6   6.8  141  218-374    56-202 (212)

No 1  
>>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A (A:)
Probab=99.87  E-value=5.9e-21  Score=144.29  Aligned_cols=378  Identities=38%  Similarity=0.704  Sum_probs=309.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             95147898532155799999999999983387124333431124335--------6769999876799999999999999
Q gi|255764465|r    1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDILMILYFFMIGLELK   72 (382)
Q Consensus         1 ~~k~k~F~~~e~~~gilLl~aa~~Al~~ANs~~~~~y~~~~~~~~~~--------~~~l~~wvNDgLMaiFFf~vGLEiK   72 (382)
                      ||....+.+.+..-+++++.+.....+.......+.--....+.-.|        +....++..+.-+.++.|..|+|++
T Consensus         1 ~~~~~~~~~~~~~i~~il~~~~~~~~l~~~~~lP~~~~~il~GillGp~~l~~~~~~~~~~~~~~lgl~~llF~~Gleld   80 (388)
T 1zcd_A            1 MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVK   80 (388)
T ss_dssp             --------CCSSHHHHHHHHHHHHHHHHHHCSSSHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             90589988323168999999999999998797025689999706300332742356529999886799999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99864867899998999999877889999998982379800035045533773789999999842788899999999999
Q gi|255764465|r   73 HELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALT  152 (382)
Q Consensus        73 rE~~~GeLs~~r~a~lP~~AAlGGmi~Paliy~~~n~~~~~~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLA  152 (382)
                      .+......+.....+.+.......+......|+..+....+..-.+++.++||.+-.+.++.-.+++.+..++..+..-+
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~  160 (388)
T 1zcd_A           81 RELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA  160 (388)
T ss_dssp             HHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGGCCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             98744777746788988999971541878988751137887675478754750899999999964779848999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf             87544799888864177666799999999999999986259861237899999999999712865678988886317678
Q gi|255764465|r  153 MIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDI  232 (382)
Q Consensus       153 IvDDlgaIlVIAifYs~~i~~~~L~~a~~~~~~l~~l~~~~v~~~~~y~~~g~~lW~~~~~sGIHaTiAGV~l~~~iP~~  232 (382)
                      +.||..+++...++++...+.....................+.+...+.......++...+.+.+..++.+..+..++..
T Consensus       161 ~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T 1zcd_A          161 IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK  240 (388)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf             97425646652000366433999999999999999999628770688988999999999970676477655666314665


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77789400003788763420443247879998851263246764787310269999999864455899999999996175
Q gi|255764465|r  233 KNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGW  312 (382)
Q Consensus       233 ~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~  312 (382)
                      ....    ....++.++..++.........|.+...+.+....................+.++|.+++...++...+...
T Consensus       241 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (388)
T 1zcd_A          241 EKHG----RSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKL  316 (388)
T ss_dssp             GGGS----SCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTT
T ss_pred             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEECCCEEEEEEEEHHHHHCCC
T ss_conf             5578----997999999874005665566877640351335665224445578866742121705798745499887364


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             4389998999999999987558999999866406872-578876559999999999999999994147789
Q gi|255764465|r  313 GKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNA-NNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK  382 (382)
Q Consensus       313 ~~lP~g~~w~~l~~v~~LaGIGFTmSLfIa~LAF~~~-~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk  382 (382)
                      ...+.+.+|++...++..++.++.+++....++...- ++.....-..++..++++....-...|..+||+
T Consensus       317 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vi~s~~i~~~~~~~~~~~~~~~~  387 (388)
T 1zcd_A          317 AHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPS  387 (388)
T ss_dssp             TCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC---
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             67999998899999999988999999999998558998677722699999999999999999997336899


No 2  
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:64-99,F:249-268,F:454-514)
Probab=25.53  E-value=35  Score=13.25  Aligned_cols=46  Identities=15%  Similarity=0.108  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999866406872--578876559999999999999999994147789
Q gi|255764465|r  336 TMSLFLTLQAFPNA--NNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK  382 (382)
Q Consensus       336 TmSLfIa~LAF~~~--~~~~~~aKlgIL~~S~~aailG~~~l~~~~~kk  382 (382)
                      |++..+-+.+|++.  .++-.++-+++++ .++..++..+.+|...|||
T Consensus        69 tl~~yiY~~aF~~~~~~~~G~aSAiavIL-flIi~iv~~i~~r~~~k~e  116 (117)
T 2r6g_F           69 LLVNYTYRIAFEGGGGQDFGLAAAIATLI-FLLVGALAIVNLKATRMKF  116 (117)
T ss_dssp             CHHHHHHHHHTSSSSCCCHHHHHHHHHHH-HHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf             99999999998514445689999999999-9999999999999983258


No 3  
>>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} (G:)
Probab=20.96  E-value=43  Score=12.70  Aligned_cols=30  Identities=30%  Similarity=0.623  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             026999999986445589999999999617
Q gi|255764465|r  282 DPIVWGVMLGLFLGKQSGIFLFAFSTVKIG  311 (382)
Q Consensus       282 ~pv~~gI~~gL~iGK~lGI~~~s~lavkl~  311 (382)
                      +|.-.||++||+-=...|.|..+|+--|.+
T Consensus         3 E~lL~GiVlGlipvTlaGlfv~AylQyrRg   32 (37)
T 1q90_G            3 EPLLCGIVLGLVPVTIAGLFVTAYLQYLRG   32 (37)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             079865788437999999999999999853


No 4  
>>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (G:)
Probab=19.68  E-value=46  Score=12.54  Aligned_cols=30  Identities=30%  Similarity=0.619  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             026999999986445589999999999617
Q gi|255764465|r  282 DPIVWGVMLGLFLGKQSGIFLFAFSTVKIG  311 (382)
Q Consensus       282 ~pv~~gI~~gL~iGK~lGI~~~s~lavkl~  311 (382)
                      +|.-.||++||+-=...|.|..+|+--|.+
T Consensus         3 E~lL~GiVLGlipiTl~Glfv~AylQyrRg   32 (37)
T 1vf5_G            3 EPLLDGLVLGLVFATLGGLFYAAYQQYKRP   32 (37)
T ss_dssp             ------CHHHHHHHHHHHHTHHHHHHTCC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             068864789748999999999999998303


No 5  
>>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:434-602)
Probab=11.51  E-value=76  Score=11.23  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46764787310269999999864455899999999996
Q gi|255764465|r  272 ISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVK  309 (382)
Q Consensus       272 l~~~~~~~~~~pv~~gI~~gL~iGK~lGI~~~s~lavk  309 (382)
                      ++....+...+.++. .+++..+|-|+||.++..+..-
T Consensus       116 ~Es~~ag~~as~l~a-~~fs~~~gt~igi~g~ali~a~  152 (169)
T 1cii_A          116 TETIIAGNAATALVA-LVFSILTGSALGIIGYGLLMAV  152 (169)
T ss_dssp             HTTTBTTCBHHHHHH-HHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHH
T ss_conf             999998458999999-9999984246899999999999


No 6  
>>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:1-45)
Probab=9.51  E-value=63  Score=11.75  Aligned_cols=11  Identities=64%  Similarity=0.860  Sum_probs=4.1

Q ss_pred             CCHHHHHHHHH
Q ss_conf             73789999999
Q gi|255764465|r  124 TDIAFTLGILS  134 (382)
Q Consensus       124 TDiAFalgvl~  134 (382)
                      ||++|.+++++
T Consensus        16 sd~~F~L~~La   26 (45)
T 3lsg_A           16 TDSQFTLSVLS   26 (45)
T ss_dssp             TCTTCCHHHHH
T ss_pred             CCCCCCHHHHH
T ss_conf             89998999999


No 7  
>>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* (A:1-20,A:370-501)
Probab=9.36  E-value=91  Score=10.76  Aligned_cols=15  Identities=20%  Similarity=0.337  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             899999999996175
Q gi|255764465|r  298 SGIFLFAFSTVKIGW  312 (382)
Q Consensus       298 lGI~~~s~lavkl~~  312 (382)
                      .||++.-|..+|-+.
T Consensus        25 ~GImi~DY~ivRk~~   39 (152)
T 2jln_A           25 AGIMISDYFLVRRRR   39 (152)
T ss_dssp             HHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999998227


No 8  
>>2vt4_A BETA1 adrenergic receptor; GPCR, membrane, palmitate, transducer, antagonist bound form, integral membrane protein; HET: P32 SOG D10; 2.7A {Meleagris gallopavo} (A:)
Probab=6.60  E-value=1.2e+02  Score=10.02  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=22.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7888999999999998754479988886417
Q gi|255764465|r  138 PNIPSSLKIFFTALTMIDDFSAIAIMAIFYT  168 (382)
Q Consensus       138 ~rvp~~lrvFLlaLAIvDDlgaIlVIAifYs  168 (382)
                      +|.....-.|+..||+.|.+.....+-..+.
T Consensus        40 ~~l~t~~n~~i~nLAvaDll~~~~~~p~~~~   70 (313)
T 2vt4_A           40 QRLQTLTNLFITSLACADLVVGLLVVPFGAT   70 (313)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8888667999999999999999999899999


No 9  
>>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G- protein coupled receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae} (A:)
Probab=5.78  E-value=1.4e+02  Score=9.57  Aligned_cols=33  Identities=9%  Similarity=0.195  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             102699999998644558999999999961754
Q gi|255764465|r  281 SDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWG  313 (382)
Q Consensus       281 ~~pv~~gI~~gL~iGK~lGI~~~s~lavkl~~~  313 (382)
                      .+.++.+|+.|--+|--.=-....|...|-+..
T Consensus        16 ~~~~~~aIv~GvriGa~~l~liilw~isk~kkT   48 (80)
T 2k9p_A           16 NSTVTQAILFGVRSGAAALTLIVVWITSRSRKT   48 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred             HHHHHEEHEEHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             724230010012688999999999999636779


No 10 
>>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} (A:31-242)
Probab=5.77  E-value=1.4e+02  Score=9.56  Aligned_cols=141  Identities=13%  Similarity=0.075  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67898888631767877789400003788763420443247879998851263246764787310269999999864455
Q gi|255764465|r  218 TTVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQ  297 (382)
Q Consensus       218 aTiAGV~l~~~iP~~~~~~~~~~~~~~~~le~~l~p~v~~~IlPlFAfaNaGV~l~~~~~~~~~~pv~~gI~~gL~iGK~  297 (382)
                      +.+.+.+....+-...++...+......+-.+.-+....+...+.=.++..--.-++.+.+...-.+..|-..|-.+|| 
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~g~g~~~i~~~~~~~~~~~~~~~~~~k~~~~~lt~~sG~s~G~egP~v~iGa~~g~~~~~-  134 (212)
T 1ots_A           56 SAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-  134 (212)
T ss_dssp             HHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-
T ss_conf             9999999999997417767889989999998178886508899999999999997277776755299999999999999-


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999961754389998999999999987558------9999998664068725788765599999999999999
Q gi|255764465|r  298 SGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIG------FTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYA  371 (382)
Q Consensus       298 lGI~~~s~lavkl~~~~lP~g~~w~~l~~v~~LaGIG------FTmSLfIa~LAF~~~~~~~~~aKlgIL~~S~~aailG  371 (382)
                                    ..+++.+-..+.+...|.-||++      .|-.+|.-|....+ ....-+.=+.++++|.+|....
T Consensus       135 --------------~~~~~~~~~~~~l~~~G~aaglaa~f~aPlag~~f~~E~~~~~-~~~~~~~l~~~~ias~~a~~v~  199 (212)
T 1ots_A          135 --------------IFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ-FRYTLISIKAVFIGVIMSTIMY  199 (212)
T ss_dssp             --------------HTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCS-SSCCCCCHHHHHHHHHHHHHHH
T ss_pred             --------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------8432406888899999999999887168258899998998620-0243458999999999988764


Q ss_pred             HHH
Q ss_conf             999
Q gi|255764465|r  372 YLV  374 (382)
Q Consensus       372 ~~~  374 (382)
                      ..+
T Consensus       200 ~~~  202 (212)
T 1ots_A          200 RIF  202 (212)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             420


Done!