Query gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 382
No_of_seqs 122 out of 896
Neff 4.8
Searched_HMMs 13730
Date Wed Jun 1 03:57:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764465.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 13.3 27 0.002 11.6 3.6 26 282-307 3-28 (30)
2 d2g3qa1 a.5.2.1 (A:1339-1381) 7.8 37 0.0027 10.7 -0.1 13 325-337 6-18 (43)
3 d2axta1 f.26.1.1 (A:10-344) Ph 6.4 52 0.0038 9.9 6.0 22 49-70 91-115 (335)
4 d1nkza_ f.3.1.1 (A:) Light-har 6.2 54 0.0039 9.8 3.0 39 1-39 1-46 (53)
5 d1ijda_ f.3.1.1 (A:) Light-har 6.1 55 0.004 9.7 3.5 38 1-38 1-45 (46)
6 d1zkea1 a.30.6.1 (A:1-79) Hypo 5.9 57 0.0042 9.6 1.3 29 298-326 26-54 (79)
7 d1ciia1 f.1.1.1 (A:451-624) Co 5.3 65 0.0047 9.3 2.0 19 287-305 135-153 (174)
8 d1kqfa2 c.81.1.1 (A:34-850) Fo 5.1 69 0.005 9.1 1.7 19 119-137 241-259 (817)
9 d1v7za_ c.125.1.1 (A:) Creatin 4.8 75 0.0054 8.9 0.1 67 114-197 32-112 (257)
10 d1v54d_ f.23.1.1 (D:) Mitochon 4.7 76 0.0056 8.9 3.4 29 321-350 75-103 (144)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.33 E-value=27 Score=11.57 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02699999998644558999999999
Q gi|255764465|r 282 DPIVWGVMLGLFLGKQSGIFLFAFST 307 (382)
Q Consensus 282 ~pv~~gI~~gL~iGK~lGI~~~s~la 307 (382)
+|+-.||++||+-=...|.|..+|+-
T Consensus 3 E~ll~GivlGlipiTl~Glfv~AylQ 28 (30)
T d1q90g_ 3 EPLLCGIVLGLVPVTIAGLFVTAYLQ 28 (30)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 07987688952799999999999997
No 2
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=7.80 E-value=37 Score=10.74 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999987558999
Q gi|255764465|r 325 YGGSILCGIGFTM 337 (382)
Q Consensus 325 ~~v~~LaGIGFTm 337 (382)
..+.=|+|+||+=
T Consensus 6 ~ai~eL~~MGF~e 18 (43)
T d2g3qa1 6 LAVEELSGMGFTE 18 (43)
T ss_dssp HHHHHHHTTTSCH
T ss_pred HHHHHHHHCCCCH
T ss_conf 9999999558788
No 3
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.39 E-value=52 Score=9.90 Aligned_cols=22 Identities=23% Similarity=0.761 Sum_probs=18.4
Q ss_pred CCHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 7699998767---999999999999
Q gi|255764465|r 49 LTLRDWVNDI---LMILYFFMIGLE 70 (382)
Q Consensus 49 ~~l~~wvNDg---LMaiFFf~vGLE 70 (382)
-++.+|.||| +++.||+++|.-
T Consensus 91 ~s~~~wl~~GG~w~ii~~~~l~~v~ 115 (335)
T d2axta1 91 ASLDEWLYNGGPYQLIIFHFLLGAS 115 (335)
T ss_dssp SSHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 1267898769819999999999999
No 4
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=6.15 E-value=54 Score=9.77 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCHHHHHHH
Q ss_conf 951478985321557999999999-------999833871243334
Q gi|255764465|r 1 MTKNKFFLYRDNFTGILLISTTFI-------TMILANISFSSAYYF 39 (382)
Q Consensus 1 ~~k~k~F~~~e~~~gilLl~aa~~-------Al~~ANs~~~~~y~~ 39 (382)
|...|-+.--..+-|+.|+.+++. .-+..|.+|-..|+.
T Consensus 1 MnqgkiW~VV~PtVG~Pl~LgsVav~s~~VH~avl~~TtW~~~~~~ 46 (53)
T d1nkza_ 1 MNQGKIWTVVNPAIGIPALLGSVTVIAILVHLAILSHTTWFPAYWQ 46 (53)
T ss_dssp CCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 9875389997788672269999999999999999806805899866
No 5
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=6.06 E-value=55 Score=9.72 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCHHHHHH
Q ss_conf 9514789853215579999999999-------9983387124333
Q gi|255764465|r 1 MTKNKFFLYRDNFTGILLISTTFIT-------MILANISFSSAYY 38 (382)
Q Consensus 1 ~~k~k~F~~~e~~~gilLl~aa~~A-------l~~ANs~~~~~y~ 38 (382)
|...|-+.--..+-|+.|+.+++.- -+..|.+|-..|+
T Consensus 1 Mn~gkiW~VV~PtvG~Pl~LgsVav~s~~VH~avl~nTtW~~~~~ 45 (46)
T d1ijda_ 1 MNQGKIWTVVPPAFGLPLMLGAVAITALLVHAAVLTHTTWYAAFL 45 (46)
T ss_dssp CTTGGGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 987538999778867226999999999999999980680577761
No 6
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=5.90 E-value=57 Score=9.63 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 89999999999617543899989999999
Q gi|255764465|r 298 SGIFLFAFSTVKIGWGKLPKDTNWCLLYG 326 (382)
Q Consensus 298 lGI~~~s~lavkl~~~~lP~g~~w~~l~~ 326 (382)
.-|.+.-|+.+|.|.-.+|++++.-.+.-
T Consensus 26 AkiS~vDyImIKRGS~DmPe~l~~~~l~q 54 (79)
T d1zkea1 26 ANLSLGDFIEIKRGSMDMPKGVNEAFFTQ 54 (79)
T ss_dssp HTCCHHHHHHHHTTSSCCCTTCCGGGHHH
T ss_pred HHHHHHHHHEEECCCCCCCCCCCHHHHHH
T ss_conf 76224676101137665752127899998
No 7
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=5.31 E-value=65 Score=9.29 Aligned_cols=19 Identities=16% Similarity=0.510 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999986445589999999
Q gi|255764465|r 287 GVMLGLFLGKQSGIFLFAF 305 (382)
Q Consensus 287 gI~~gL~iGK~lGI~~~s~ 305 (382)
+-+++..+|-|+||++++.
T Consensus 135 a~~fs~~~g~~lgi~g~al 153 (174)
T d1ciia1 135 ALVFSILTGSALGIIGYGL 153 (174)
T ss_dssp HHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999702799999999
No 8
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}
Probab=5.08 E-value=69 Score=9.14 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=15.1
Q ss_pred EEECCCCHHHHHHHHHHHC
Q ss_conf 5533773789999999842
Q gi|255764465|r 119 AIPTATDIAFTLGILSWIG 137 (382)
Q Consensus 119 aIP~ATDiAFalgvl~llg 137 (382)
.|--.||+||++|++..+=
T Consensus 241 pIRPGTD~All~gmi~~Ii 259 (817)
T d1kqfa2 241 PIRSGTDITFLSGVLRYLI 259 (817)
T ss_dssp CCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6644665899999999999
No 9
>d1v7za_ c.125.1.1 (A:) Creatininase {Pseudomonas putida [TaxId: 303]}
Probab=4.77 E-value=75 Score=8.93 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=39.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCCCCHHHHHHH
Q ss_conf 035045533773789999999842788899999999999875447998888641--------------776667999999
Q gi|255764465|r 114 YLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFY--------------TQSLNLFALQVA 179 (382)
Q Consensus 114 ~~~GWaIP~ATDiAFalgvl~llg~rvp~~lrvFLlaLAIvDDlgaIlVIAifY--------------s~~i~~~~L~~a 179 (382)
-.||.-.|+.||+-.+-++..-+ .+.+++++.=.+.| +..+++..=...
T Consensus 32 EqHGpHLPlgtD~~ia~~ia~~~-----------------a~~~~~~v~P~i~~G~s~~h~~~~~~~fPGTisl~~~t~~ 94 (257)
T d1v7za_ 32 EQHGHHMCMNVDVLLPTAVCKRV-----------------AERIGALVMPGLQYGYKSQQKSGGGNHFPGTTSLDGATLT 94 (257)
T ss_dssp CCCCSSBCTTHHHHHHHHHHHHH-----------------HHHHTCEECCCBCCCBCCCHHHHSCTTSSSCBCBCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-----------------HHHCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECHHHHH
T ss_conf 04698752258999999999999-----------------9877992836515576633457655677854760778899
Q ss_pred HHHHHHHHHHHHCCCCCH
Q ss_conf 999999999862598612
Q gi|255764465|r 180 ITLIFLLFLLNRCGFTNL 197 (382)
Q Consensus 180 ~~~~~~l~~l~~~~v~~~ 197 (382)
..+.-++--+.+.|+++.
T Consensus 95 ~~l~di~~sl~~~Gfr~i 112 (257)
T d1v7za_ 95 GTVQDIIRELARHGARRL 112 (257)
T ss_dssp HHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999997088569
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.69 E-value=76 Score=8.87 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999999875589999998664068725
Q gi|255764465|r 321 WCLLYGGSILCGIGFTMSLFLTLQAFPNAN 350 (382)
Q Consensus 321 w~~l~~v~~LaGIGFTmSLfIa~LAF~~~~ 350 (382)
|+.++|+ .+-|||||.-+|+..-.|-.++
T Consensus 75 wK~v~g~-~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 75 WKTVVGA-AMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3678999-9999999999999999970799
Done!