RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA
[Candidatus Liberibacter asiaticus str. psy62]
         (382 letters)



>gnl|CDD|32821 COG3004, NhaA, Na+/H+ antiporter [Inorganic ion transport and
           metabolism].
          Length = 390

 Score =  309 bits (792), Expect = 1e-84
 Identities = 166/387 (42%), Positives = 235/387 (60%), Gaps = 15/387 (3%)

Query: 5   KFFLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVN 56
           + FL  +   GILLI    + +++AN + S +Y FD L   +         N +L  W+N
Sbjct: 9   RRFLKSEAAGGILLIIAAALALLVANSALSESY-FDFLHTPVGVRVGDLSINKSLLLWIN 67

Query: 57  DILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLK 116
           D LM ++F +IGLE+K EL+ G+LSSW   + P++ AIGG+  PA IY+ +N      L+
Sbjct: 68  DGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLE 127

Query: 117 GWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFAL 176
           GWAIP ATDIAF LG+L+ +G  +P SLKIF  AL +IDD  AI I+A+FYT  L++ AL
Sbjct: 128 GWAIPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTDLSMAAL 187

Query: 177 QVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP-DIKNY 235
            +A   I +L +LNR G   L  Y  +G  LW ++ KSG+H T+ GVI+A  +P   K  
Sbjct: 188 GIAALAIAVLAVLNRLGVRRLSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEG 247

Query: 236 HSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLG 295
            SP  R     L   L  WV   +LP F F N G+++  +  + ++ P+  G++LGLFLG
Sbjct: 248 ESPLER-----LEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLGIILGLFLG 302

Query: 296 KQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEK 355
           K  GIFLF++  VK+   KLP+  +W  +YG SILCGIGFTMSLF+   AF + + LQ  
Sbjct: 303 KPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSEDELQTA 362

Query: 356 AKIGIILSSVISIIYAYLVFKIPLRKK 382
           AK+GI++ S IS I  Y   ++ L + 
Sbjct: 363 AKLGILVGSFISAILGYSYLRLLLPRS 389


>gnl|CDD|35424 KOG0203, KOG0203, KOG0203, Na+/K+ ATPase, alpha subunit [Inorganic
           ion transport and metabolism].
          Length = 1019

 Score = 31.8 bits (72), Expect = 0.35
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 321 WCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISI 368
             LL+ G+ILC + +   +  + +  P+ +NL     +GI+L++V+ +
Sbjct: 97  SILLWIGAILCFVAY--GIQASTEDDPSDDNLY----LGIVLAAVVIV 138


>gnl|CDD|37176 KOG1965, KOG1965, KOG1965, Sodium/hydrogen exchanger protein
           [Inorganic ion transport and metabolism].
          Length = 575

 Score = 30.3 bits (68), Expect = 0.86
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 119 AIPTATDIAFTLGILSWI-GPNIPSSLKIFFTALTMIDDFSA---IAIMAIF--YTQSLN 172
           AI      A  +G   ++ G  +      F   L      SA   + ++AIF        
Sbjct: 133 AIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGVDPK 192

Query: 173 LFAL---------QVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGV 223
           L+ L          V+I L   +         +   +  +G FL+      G+     G+
Sbjct: 193 LYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGL-GVAIGL 251

Query: 224 IMALLLPDIKNYHSPSNRISFYLL 247
           I AL+L  +    +PS   +  LL
Sbjct: 252 ISALVLKFLYLRRTPSLESALMLL 275


>gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction
           only].
          Length = 517

 Score = 28.4 bits (63), Expect = 3.6
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%)

Query: 23  FITMILANISFSSAYYFDALEYKIANLTLRDWVNDI-------LMILYFFMIGLELKH 73
           F+ +    +    A      EYK  N  +  + +D             F  I LEL  
Sbjct: 387 FLDLQREGLDQPQAVLDALEEYKRENDPVFQFCDDECVLGETDGTPTAFDNIVLELYE 444


>gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
           envelope biogenesis, outer membrane].
          Length = 835

 Score = 27.6 bits (61), Expect = 5.2
 Identities = 50/316 (15%), Positives = 103/316 (32%), Gaps = 39/316 (12%)

Query: 23  FITMILANISFSSAYYFDALEYKIANLTLRDWVNDILMILYFFMIGLELKHELIHGELSS 82
               ++ ++   +      L   +A+  L   V   L I+   +    L   L      +
Sbjct: 361 LRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLGIIAALLAPALLVARLKDAAWRA 420

Query: 83  WTKR-SLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIAFTLGILSWIGPNIP 141
           + +   + +L A       A +   +     + L+           + L IL  +  +  
Sbjct: 421 YPRLLLITVLSAAPLALIVAALTGYLYTALFLALRLVVTVAILFTWYVLYILRGLSVSAR 480

Query: 142 SSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFLLNRCGFTNLFIYG 201
                   A   + + + +  +A+       L  +++ + LI +  +L   G     I  
Sbjct: 481 RLAFARALAGRALAEEAELVEVALDQIGLQLLRLIRLLLLLIAIPLVLYVWGSYLEDITL 540

Query: 202 FLGFFLWHSIFKSGIHT-TVFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVL 260
           +   +L  +    G+ + T+  ++ A+LL            +  Y+L   L  W+   VL
Sbjct: 541 W--AYLGTTGGVLGVESITLGALLQAVLL-----------FLITYVLTRNLPGWLEVRVL 587

Query: 261 PAFVF-VNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDT 319
                   T  +I+T+           G +L    G      L   ST+ I    L    
Sbjct: 588 QRLDLDAGTRYSITTLL----------GYLLIAIGG------LVGLSTLGIDLSSLQ--- 628

Query: 320 NWCLLYGGSILCGIGF 335
                  G++  G+GF
Sbjct: 629 ----WLAGALSVGLGF 640


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,938,802
Number of extensions: 289599
Number of successful extensions: 1240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1216
Number of HSP's successfully gapped: 179
Length of query: 382
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 286
Effective length of database: 4,189,273
Effective search space: 1198132078
Effective search space used: 1198132078
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.3 bits)