RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA
[Candidatus Liberibacter asiaticus str. psy62]
(382 letters)
>gnl|CDD|181955 PRK09561, nhaA, pH-dependent sodium/proton antiporter; Reviewed.
Length = 388
Score = 350 bits (900), Expect = 4e-97
Identities = 157/394 (39%), Positives = 228/394 (57%), Gaps = 20/394 (5%)
Query: 1 MTKNKFFLYRDNFTGILLISTTFITMILANISFSSAYY----------FDALEYKIANLT 50
M + FL + GILLI + M++AN S Y ALE N
Sbjct: 2 MKHIRRFLSSEASGGILLIIAAALAMLMANSPTSGWYQDFLETPVQLRVGALEI---NKP 58
Query: 51 LRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCH 110
L W+ND LM ++F +IGLE+K EL+ G L+S + +LP++ AIGG+ PA IY++ N
Sbjct: 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNYA 118
Query: 111 TEIYLKGWAIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQS 170
+ +GWAIP ATDIAF LG+L+ +G +P +LKIF AL +IDD AI I+A+FYT
Sbjct: 119 DPVTREGWAIPAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYTSD 178
Query: 171 LNLFALQVAITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP 230
L++ +L VA I +L +LN CG +Y +G LW ++ KSG+H T+ GVI+ +P
Sbjct: 179 LSMVSLGVAAVAIAVLAVLNLCGVRRTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIP 238
Query: 231 -DIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVM 289
K+ SP+ R L GL WV L+LP F F N G+++ + ++ P+ G+
Sbjct: 239 LKEKHGRSPAER-----LEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIA 293
Query: 290 LGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNA 349
LGLF+GK GIFLF++ VK+ KLP+ T + +Y +LCGIGFTMS+F+ AF
Sbjct: 294 LGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFGGV 353
Query: 350 N-NLQEKAKIGIILSSVISIIYAYLVFKIPLRKK 382
+ L AK+GI++ S++S + Y + L
Sbjct: 354 DPELINYAKLGILIGSLLSAVIGYSWLRKVLPAS 387
>gnl|CDD|181954 PRK09560, nhaA, pH-dependent sodium/proton antiporter; Reviewed.
Length = 389
Score = 342 bits (880), Expect = 9e-95
Identities = 169/387 (43%), Positives = 239/387 (61%), Gaps = 17/387 (4%)
Query: 7 FLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDI 58
FL + GILL++ + MI+AN S Y F L +A +L W+ND
Sbjct: 8 FLKSEAAGGILLMAAAALAMIVANSPLSEGY-FSFLHTPVAIQIGAFSIGKSLLHWINDG 66
Query: 59 LMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGW 118
LM ++F ++GLE+K EL+ G+LSSW +R LP + A+GG+ PA IY N + L+GW
Sbjct: 67 LMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNYNNPETLRGW 126
Query: 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQV 178
AIP ATDIAF LG+L+ +G +P SLK+F AL +IDD AI I+A+FYT L+L AL +
Sbjct: 127 AIPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYTSDLSLPALAL 186
Query: 179 AITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP---DIKNY 235
A I +LFLLNR G T L Y +G LW ++ KSG+H T+ GV++A +P +
Sbjct: 187 AAIAIAVLFLLNRLGVTKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDE 246
Query: 236 HSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLG 295
SP + L L WV +LP F F N G++++ I + ++ P+ G+ LGLFLG
Sbjct: 247 ESP-----LHHLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLG 301
Query: 296 KQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEK 355
KQ G+F F++ VK+G KLP+ NW +YG S+LCGIGFTMSLF+ AF + L +
Sbjct: 302 KQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLAFGASEELLTE 361
Query: 356 AKIGIILSSVISIIYAYLVFKIPLRKK 382
A++GI+L S++S I YL+ ++ LRKK
Sbjct: 362 ARLGILLGSLLSAILGYLLLRLTLRKK 388
>gnl|CDD|148533 pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family
contains a number of bacterial Na+/H+ antiporter 1
proteins. These are integral membrane proteins that
catalyse the exchange of H+ for Na+ in a manner that is
highly dependent on the pH.
Length = 374
Score = 333 bits (855), Expect = 7e-92
Identities = 160/375 (42%), Positives = 231/375 (61%), Gaps = 19/375 (5%)
Query: 13 FTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDILMILYF 64
GILL++ + +I+AN S +Y F L NL+L W+ND LM L+F
Sbjct: 5 AGGILLLAAAALALIVANSPLSESY-FAFLHTPFGVGVGDLGINLSLHHWINDGLMALFF 63
Query: 65 FMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTAT 124
++GLE+K EL+ GEL S + +LP + A+GG+ PA IY+++N + GWAIP AT
Sbjct: 64 LLVGLEIKRELLEGELRSPRQAALPGIAALGGMIVPALIYLLLNYGDPETVSGWAIPMAT 123
Query: 125 DIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIF 184
DIAF LG+L+ +G +P+SLKIF AL ++DD AI I+A+FY++ L+L AL A I
Sbjct: 124 DIAFALGVLALLGSRVPASLKIFLLALAIVDDLGAILIIALFYSEELSLAALLGAALGIA 183
Query: 185 LLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP-----DIKNYHSPS 239
+L LLNR G +L Y LG LW ++ KSG+H T+ GVI+ LL+P HSP
Sbjct: 184 VLALLNRLGVRSLLPYLVLGVILWFAVLKSGVHATLAGVILGLLIPLKKRKGEPAAHSPL 243
Query: 240 NRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSG 299
R L L WV +LP F F N G++++ + D++ P+ G+ LGL +GK G
Sbjct: 244 ER-----LEHALHPWVAFAILPLFAFANAGVSLAGMTLDDLTSPLTLGIALGLVVGKPIG 298
Query: 300 IFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIG 359
IF F++ VK+G KLP+ +W ++G +ILCGIGFTMSLF+ AFP A L ++AK+G
Sbjct: 299 IFGFSWLAVKLGLAKLPEGISWGQIFGVAILCGIGFTMSLFIGSLAFPGAPALIDEAKLG 358
Query: 360 IILSSVISIIYAYLV 374
I++ S++S + YL+
Sbjct: 359 ILIGSLVSALIGYLL 373
>gnl|CDD|162034 TIGR00773, NhaA, Na+/H+ antiporter NhaA. These proteins are
members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC.
2.A.33). The Escherichia coli NhaA protein probably
functions in the regulation of the internal pH when the
external pH is alkaline. It also uses the H+ gradient to
expel Na+ from the cell. Its activity is highly pH
dependent. Only the E. coli protein is functionally and
structurally well characterized.
Length = 373
Score = 277 bits (710), Expect = 4e-75
Identities = 151/377 (40%), Positives = 220/377 (58%), Gaps = 16/377 (4%)
Query: 7 FLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDI 58
F ++ GILL+ + M++AN S S +Y D L + +L W+ND
Sbjct: 1 FFKSESAGGILLVIAAALAMVMAN-SALSEWYHDFLHTPVQLQIGSFVIGKSLLHWINDG 59
Query: 59 LMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGW 118
LM ++F +IGLE+K EL+ G LSS + P++ AIGG+ PA IY+ N + I +GW
Sbjct: 60 LMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNANDPITREGW 119
Query: 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQV 178
AIP ATDIAF LG+++ +G +P +LKIF AL +IDD AI I+A+FYT L++ AL V
Sbjct: 120 AIPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYTNDLSMAALLV 179
Query: 179 AITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP-DIKNYHS 237
A I +L +LNRCG L Y +G LW ++ KSG+H T+ GVI+ +P K S
Sbjct: 180 AAVAIAVLAVLNRCGVRRLGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGES 239
Query: 238 PSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQ 297
P R+ L WV L+LP F F N G+++ + ++ + G++LGL +GK
Sbjct: 240 PLKRLEHV-----LHPWVAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKP 294
Query: 298 SGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNAN-NLQEKA 356
GIFLF++ VK+ KLP+ N+ ++ +LCGIGFTMS+F+ AF + + L A
Sbjct: 295 LGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFGSVDPELITWA 354
Query: 357 KIGIILSSVISIIYAYL 373
K+GI+L S S + Y
Sbjct: 355 KLGILLGSTTSAVLGYS 371
>gnl|CDD|184855 PRK14853, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 423
Score = 258 bits (660), Expect = 2e-69
Identities = 130/389 (33%), Positives = 212/389 (54%), Gaps = 16/389 (4%)
Query: 7 FLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKI--------ANLTLRDWVNDI 58
L ++ G LL+ +I AN + YF ++K+ +L+L W D
Sbjct: 11 ILRKETVGGALLLVAAVAALIWANSPWGD-SYFALRDFKLGPEPGGLHLSLSLGTWAADG 69
Query: 59 LMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGW 118
L+ ++FF++GLELK E + G+L ++ +LP+ A+GG+ PA IY+ +N L+GW
Sbjct: 70 LLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAVNLAGGGALRGW 129
Query: 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQV 178
AIPTATDIAF L +L+ IG ++PS+L+ F L ++DD AI ++A+FYT LNL AL +
Sbjct: 130 AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYTSELNLEALLL 189
Query: 179 AITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSP 238
A+ + L +LL + ++ LG W + +SG+H TV GV++ +P +
Sbjct: 190 ALVPLALFWLLVQKRVRKWWLLLPLGVATWILVHESGVHATVAGVLLGFAVP-VLRREGE 248
Query: 239 SNRISFYLLGDGLKSWVMPL----VLPAFVFVNTGLTI--STIPYTDISDPIVWGVMLGL 292
+ L + L+ + PL +P F F + G+ I + ++DPIV GV+LGL
Sbjct: 249 EGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGL 308
Query: 293 FLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNL 352
+GK GIF + K L D W ++G ++L GIGFT+SL + AF +
Sbjct: 309 VVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLLIGELAFGGGSAR 368
Query: 353 QEKAKIGIILSSVISIIYAYLVFKIPLRK 381
+ K+G++ S+I+ + A ++ ++ RK
Sbjct: 369 DDAVKVGVLTGSLIAALLASVLLRLRNRK 397
>gnl|CDD|184856 PRK14854, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 383
Score = 253 bits (647), Expect = 6e-68
Identities = 150/377 (39%), Positives = 219/377 (58%), Gaps = 16/377 (4%)
Query: 15 GILLISTTFITMILANISFSSAY-YFDALEYK--IANLT----LRDWVNDILMILYFFMI 67
G++L S + +++ N +S Y + + K I NL L W+ND LM +YF I
Sbjct: 13 GLILFSAALLAIVVNNSPLASYYAMLETINVKLGIENLVIDKNLMHWINDGLMAIYFLYI 72
Query: 68 GLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGWAIPTATDIA 127
GLE+K E+I G LS + P + A G+ P+ IY+ IN H + GWAIP+ATDIA
Sbjct: 73 GLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSIN-HDIKVINGWAIPSATDIA 131
Query: 128 FTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQVAITLIFLLF 187
FTLGIL+ +G +P+ LK+ + + DD +AIAI+AIFYT+SL+L +L + I +
Sbjct: 132 FTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYTKSLSLLSLSLGTLFILAMI 191
Query: 188 LLNRCGFTN-LFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKN-YHSPSNRISFY 245
+ NR N +Y LGFF W KSG+H T+ G AL +P +N SP+N
Sbjct: 192 ICNRIFKINRSSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANF---- 247
Query: 246 LLGDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAF 305
+ D L W++ +LP F F N G++ S I ++ + +PI G++LGLF+GKQ GIF
Sbjct: 248 -MEDSLHPWIIYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILA 306
Query: 306 STVKIGWGKLPKDTNWCLLYGGSILCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSV 365
K+ W KL + + LYG S+LCGIGFTMSLF+ + AF N +L KIG+++ SV
Sbjct: 307 VFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAF-NDTHLLNAIKIGVVVGSV 365
Query: 366 ISIIYAYLVFKIPLRKK 382
+S + Y+V + +
Sbjct: 366 LSGFFGYIVLRFIVTNP 382
>gnl|CDD|184857 PRK14855, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 423
Score = 242 bits (619), Expect = 1e-64
Identities = 145/413 (35%), Positives = 214/413 (51%), Gaps = 44/413 (10%)
Query: 7 FLYRDNFTGILLISTTFITMILANISFSSAYYFDALEYKIA--------NLTLRDWVNDI 58
F+ + F G+LL+ T I AN + Y F +A +L+L WVND
Sbjct: 12 FVESEAFAGLLLVGTAVAAFIWANSPWREGY-FTLQHTHLALSLGGWSLDLSLEHWVNDG 70
Query: 59 LMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGW 118
LM ++F ++GLE+K EL+ GELSS + +L ++ A+GG+ PA +Y +N GW
Sbjct: 71 LMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNAGG-PGASGW 129
Query: 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQV 178
+P ATDIAF LG+L+ +G +P LK+F TAL ++DD A+ ++A+FYT LNL AL +
Sbjct: 130 GVPMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTSGLNLLALLL 189
Query: 179 AITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLPDIKNYHSP 238
A L L R G T+L IY LG LW + KSG+H TV GV++AL +P + P
Sbjct: 190 AALTWALALLAGRLGVTSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLP 249
Query: 239 -----------------------------SNRISFYLLGDGLKSWVMPLVLPAFVFVNTG 269
+ + L L W L+LP F N G
Sbjct: 250 YLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAG 309
Query: 270 LTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWCLLYGGSI 329
+++S +S GV LGL LGK G+ A+ V++G LP+ NW + G +
Sbjct: 310 VSVSGGGLGTVS----LGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGL 365
Query: 330 LCGIGFTMSLFLTLQAFPNANNLQEKAKIGIILSSVISIIYAYLVFKIPLRKK 382
L GIGFTMSLF++ AF +A L +AK+G++ +SV++ + +R +
Sbjct: 366 LAGIGFTMSLFISNLAFADA-ALLTQAKLGVLAASVLAALLGAGWLWWAVRGQ 417
>gnl|CDD|184858 PRK14856, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 438
Score = 227 bits (581), Expect = 3e-60
Identities = 139/412 (33%), Positives = 216/412 (52%), Gaps = 48/412 (11%)
Query: 7 FLYRDNFTGILLISTTFITMILANISFSSAYY--------FDALEYKIANLTLRDWVNDI 58
F+ ++F GI L + M++AN +Y+ F ++ I +L +W++D+
Sbjct: 17 FIKSESFGGIFLFLNAVLAMVVANSFLKESYFALWHTPFGFQIGDFFIG-FSLHNWIDDV 75
Query: 59 LMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCHTEIYLKGW 118
LM L+F MIGLE+K EL+ GELSS+ K S P++ A+GG+ P IY +N T G+
Sbjct: 76 LMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNADTPSQ-HGF 134
Query: 119 AIPTATDIAFTLGILSWIGPNIPSSLKIFFTALTMIDDFSAIAIMAIFYTQSLNLFALQV 178
IP ATDIAF LG++ +G +P++LK+F L + DD AI ++A+FYT +L L
Sbjct: 135 GIPMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTTNLKFAWLLG 194
Query: 179 AITLIFLLFLLNRCGFTNLFIYGFLGFFLWHSIFKSGIHTTVFGVIMALLLP-----DIK 233
A+ ++ +L +LNR +L Y LG LW + +SGIH T+ V++A ++P D K
Sbjct: 195 ALGVVLVLAVLNRLNVRSLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSK 254
Query: 234 NY-------------------------------HSPSNRISFYLLGDGLKSWVMPLVLPA 262
N + + + L L ++P
Sbjct: 255 NVELLELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPL 314
Query: 263 FVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFSTVKIGWGKLPKDTNWC 322
F F N G+++ + ++ D ++ GV+LGL LGK GIFL F + K+ PK +W
Sbjct: 315 FAFANAGVSVDSSINLEV-DKVLLGVILGLCLGKPLGIFLITFISEKLKITARPKGISWW 373
Query: 323 LLYGGSILCGIGFTMSLFLTLQAFPNAN-NLQEKAKIGIILSSVISIIYAYL 373
+ G +L GIGFTMS+F++ AF + + + E AKI I+L S+IS I L
Sbjct: 374 HILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGAL 425
>gnl|CDD|185020 PRK15060, PRK15060, L-dehydroascorbate transporter large permease
subunit; Provisional.
Length = 425
Score = 30.3 bits (68), Expect = 0.75
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 224 IMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVF-VNTGLTISTIPYTDISD 282
+ ALL+P +++ + P NR + + G+ + ++P +P +F V++GL+IS + I+
Sbjct: 118 VAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAP 177
Query: 283 PIVWGVMLGL 292
I+ G L L
Sbjct: 178 GIMMGATLML 187
>gnl|CDD|183046 PRK11234, nfrB, bacteriophage N4 adsorption protein B; Provisional.
Length = 727
Score = 30.1 bits (68), Expect = 0.90
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 193 GFTNL--FIYGFLGFFLWH---SIFKSGIHTTVFGVIMALLLPDIKNYHSPSNRISFYLL 247
GF L L +FLW + + +++ LLL + P +
Sbjct: 332 GFKTLGWTSSLTLNYFLWRDRKGAITNFVSFLAMLLMLQLLLLLLYESLWPDAWHFLSIF 391
Query: 248 GDGLKSWVMPLVLPAFVFVNTGLTISTIPYTDISDPIVWGVMLGLFLGKQSGIFLFAFST 307
+W+M L+ +N GL ++ I V +F+ G+ S
Sbjct: 392 SGS--AWLMTLLW-----LNFGLMVNRI------------VQRVIFVTGYYGLTQGLLSV 432
Query: 308 VKIGWGKL 315
+++ WG L
Sbjct: 433 LRLLWGNL 440
>gnl|CDD|177542 PHA03144, PHA03144, helicase-primase primase subunit; Provisional.
Length = 746
Score = 29.7 bits (67), Expect = 1.3
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 155 DDFSAIAIMAIFYTQSLNLFALQVAITLIFLLFL---LNRCGFTNLFIYGFLGFFLW 208
+ FSA A+MA++ +FA A+ IF FL L G + + LGF W
Sbjct: 268 EGFSAPALMALYRQWHATVFAAPGALVPIF-AFLGPELEPRGEEVDY-FCVLGFPGW 322
>gnl|CDD|130861 TIGR01802, CM_pl-yst, monofunctional chorismate mutase, eukaryotic
type. This model represents the plant and yeast
(plastidic) chorismate mutase. These CM's are distinct
from other forms by the presence of an extended
regulatory domain.
Length = 246
Score = 27.8 bits (62), Expect = 5.5
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 231 DIKNYHSPSNRISFYLLGDGLKSWVMPL 258
D +I + D K WV+PL
Sbjct: 205 DPTVPEESGRKIDPEYVVDIYKDWVIPL 232
>gnl|CDD|181292 PRK08208, PRK08208, coproporphyrinogen III oxidase; Validated.
Length = 430
Score = 27.3 bits (61), Expect = 6.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 187 FLLNRCGFTNLF 198
F RCGF NLF
Sbjct: 48 FCEMRCGFCNLF 59
>gnl|CDD|178704 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.
Length = 832
Score = 26.8 bits (59), Expect = 8.7
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 25/100 (25%)
Query: 215 GIHTT----VFGVIMALLLPDIKNYHSPSNRISFYLLGDGLKSWVMPLVLPAFVFVNTGL 270
G H+ VFG+++ P+ + L+ + L+ +V L+LP F F +GL
Sbjct: 292 GTHSVFGAFVFGLVI------------PNGPLGVTLI-EKLEDFVSGLLLPLF-FAISGL 337
Query: 271 TISTIPYTDISDPIVWGVMLGLFL----GKQSGIFLFAFS 306
+ T I P WG+++ + + GK G + AF
Sbjct: 338 KTNV---TKIQGPATWGLLVLVIIMASAGKIMGTIIIAFF 374
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.146 0.459
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,369,980
Number of extensions: 429338
Number of successful extensions: 1389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1353
Number of HSP's successfully gapped: 116
Length of query: 382
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 287
Effective length of database: 3,941,713
Effective search space: 1131271631
Effective search space used: 1131271631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)