RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA
[Candidatus Liberibacter asiaticus str. psy62]
         (382 letters)



>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
           synthase) {Haemophilus influenzae [TaxId: 727]}
          Length = 310

 Score = 26.4 bits (57), Expect = 3.4
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 51  LRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCH 110
           ++      +  +    +   +  + + GE        +     IG    P  + + I   
Sbjct: 188 IKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ---GIGAGFIPKNLDLSIIDR 244

Query: 111 TEIYLKGWAIPTATDIAFTLGIL 133
            E      A+ TA  +    GIL
Sbjct: 245 VETVDSDTALATARRLMAEEGIL 267


>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
           catalytic domain {Bacillus subtilis [TaxId: 1423]}
          Length = 275

 Score = 26.0 bits (56), Expect = 6.0
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 216 IHTTVFGVIMALLLPDIKNYHSPSNRIS 243
           IH T  GV    +    +  H+ +  + 
Sbjct: 213 IHLTANGVPALSITIATRYIHTHAAMLH 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,451,171
Number of extensions: 66905
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 10
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.8 bits)