RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|255764465|ref|YP_003064775.2| Na+/H+ antiporter NhaA [Candidatus Liberibacter asiaticus str. psy62] (382 letters) >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Score = 26.4 bits (57), Expect = 3.4 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 51 LRDWVNDILMILYFFMIGLELKHELIHGELSSWTKRSLPLLGAIGGITFPACIYMIINCH 110 ++ + + + + + + GE + IG P + + I Sbjct: 188 IKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQ---GIGAGFIPKNLDLSIIDR 244 Query: 111 TEIYLKGWAIPTATDIAFTLGIL 133 E A+ TA + GIL Sbjct: 245 VETVDSDTALATARRLMAEEGIL 267 >d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Length = 275 Score = 26.0 bits (56), Expect = 6.0 Identities = 6/28 (21%), Positives = 11/28 (39%) Query: 216 IHTTVFGVIMALLLPDIKNYHSPSNRIS 243 IH T GV + + H+ + + Sbjct: 213 IHLTANGVPALSITIATRYIHTHAAMLH 240 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.331 0.146 0.459 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,451,171 Number of extensions: 66905 Number of successful extensions: 149 Number of sequences better than 10.0: 1 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 10 Length of query: 382 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 295 Effective length of database: 1,213,086 Effective search space: 357860370 Effective search space used: 357860370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 54 (24.8 bits)