RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764466|ref|YP_003064779.2| hypothetical protein
CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
(174 letters)
>gnl|CDD|179370 PRK02110, PRK02110, disulfide bond formation protein B;
Provisional.
Length = 169
Score = 37.7 bits (88), Expect = 0.002
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 43/170 (25%)
Query: 26 IVCF------LMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLST--RNHNSYWSTRLL 77
++C L +Q+V G PC LCI ++ Y LIA+ A L+ RN W L
Sbjct: 20 LICLALVGGALYLQYVKGEDPCPLCIIQR---YAFLLIAIFAFLAAAMRNTRGVWVLEGL 76
Query: 78 LMTLGLLMFFNMTISVIHV------GIECGIWEKNAICMNNSKIESITSTVDLLTQMEQE 131
++ L + ++ HV G CG I+++ VD L +
Sbjct: 77 IVLSALG---GIAVAGRHVYIQLNPGFSCG-------------IDALQPIVDSLPPAKW- 119
Query: 132 NIPSCNK-----TTLY--VLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174
+P K T Y +LGLSL W +I +F L + L +R++
Sbjct: 120 -LPGVFKVDGLCETPYPPILGLSLPGWALI-AFVLIAVAVAVSLIRNRRR 167
>gnl|CDD|162585 TIGR01893, aa-his-dipept, aminoacyl-histidine dipeptidase.
Length = 477
Score = 28.9 bits (65), Expect = 0.68
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 88 NMTISVIHVGIECGIWEKNAICMNNSKIESIT---STVDLLTQMEQENIPSCNKT 139
+ + VIH G+ECGI I I+ I+ + D + E+ +I S K
Sbjct: 416 DPEVKVIHAGLECGI-----ISSKIPDIDMISIGPNIYDPHSPNERVSISSVEKV 465
>gnl|CDD|148137 pfam06339, Ectoine_synth, Ectoine synthase. This family consists
of several bacterial ectoine synthase proteins. The
ectABC genes encode the diaminobutyric acid
acetyltransferase (EctA), the diaminobutyric acid
aminotransferase (EctB), and the ectoine synthase
(EctC). Together these proteins constitute the ectoine
biosynthetic pathway.
Length = 127
Score = 28.3 bits (64), Expect = 0.96
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 72 W-STRLLLMTLGLLMFFNMTISVIHVGIECGIWEKN 106
W S RLLL G M F+ I+ I+ G E I KN
Sbjct: 21 WESRRLLLKDDG--MGFSFHITTIYAGTETHIHYKN 54
>gnl|CDD|184986 PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.
Length = 485
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 86 FFNMT--ISVIHVGIECGIWEK 105
FN T I +IH G+ECG+++K
Sbjct: 418 LFNKTPNIQIIHAGLECGLFKK 439
>gnl|CDD|177545 PHA03150, PHA03150, hypothetical protein; Provisional.
Length = 456
Score = 27.9 bits (62), Expect = 1.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 102 IWEKNAICMNNSKIESITSTVDLLTQMEQENIPSCNK--TTLYVLGLSLAFW 151
IW+ N I + VDLL+ ++++IP+ N T+ G++L W
Sbjct: 27 IWQVNLITCGIQHESAFCFVVDLLSNTDRDSIPALNSHQPTIQEHGVNLMQW 78
>gnl|CDD|179331 PRK01749, PRK01749, disulfide bond formation protein B;
Provisional.
Length = 176
Score = 26.4 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 28 CFLMIQHVGGYPPCDLCIQEQKIYYFGFLIA 58
L QHV PC +CI E ++ FG L A
Sbjct: 28 TALYFQHVMLLKPCVMCIYE-RVALFGILGA 57
>gnl|CDD|183953 PRK13290, ectC, L-ectoine synthase; Reviewed.
Length = 125
Score = 26.0 bits (58), Expect = 5.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 72 W-STRLLLMTLGLLMFFNMTISVIHVGIECGIWEKN 106
W S RLLL G M F+ + I+ G E + KN
Sbjct: 21 WTSRRLLLKDDG--MGFSFHETTIYAGTETHLHYKN 54
>gnl|CDD|132031 TIGR02986, restrict_Alw26I, type II restriction endonuclease,
Alw26I/Eco31I/Esp3I family. Members of this family are
type II restriction endonucleases of the
Alw26I/Eco31I/Esp3I family. Characterized specificities
of three members are GGTCTC, CGTCTC, and the shared
subsequence GTCTC.
Length = 424
Score = 25.9 bits (57), Expect = 5.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 34 HVGGYPPCDLCIQEQKIYYF 53
H G PC C + + Y
Sbjct: 78 HPTGVKPCQTCGKTMSLGYS 97
>gnl|CDD|118197 pfam09665, RE_Alw26IDE, Type II restriction endonuclease
(RE_Alw26IDE). Members of this entry are type II
restriction endonucleases of the Alw26I/Eco31I/Esp3I
family. characterized specificities of the three
members are GGTCTC, CGTCTC and the shared subsequence
GTCTC.
Length = 511
Score = 25.5 bits (56), Expect = 6.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 34 HVGGYPPCDLCIQEQKIYYF 53
H G PC C + + Y
Sbjct: 78 HPTGVKPCKTCGKTMSLGYS 97
>gnl|CDD|161757 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family.
Length = 254
Score = 25.8 bits (57), Expect = 6.9
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 RIILLNISGVIVCF-LMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLSTRNHNSYWS 73
+II N++G+ + + P LC+QE K+ F + ++ ++S
Sbjct: 2 KIISWNVNGLRARLHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKE---GYHVFFS 57
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.329 0.141 0.427
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,665,567
Number of extensions: 153591
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 28
Length of query: 174
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,114,577
Effective search space: 357968199
Effective search space used: 357968199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)