RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764466|ref|YP_003064779.2| hypothetical protein
CLIBASIA_01255 [Candidatus Liberibacter asiaticus str. psy62]
         (174 letters)



>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane
           protein, E. coli, cell inner membrane, cell membrane,
           chaperone, electron transport, membrane; HET: UQ1; 3.30A
           {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2zup_B* 2k73_A
           2k74_A* (A:)
          Length = 176

 Score = 73.5 bits (180), Expect = 2e-14
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 10/174 (5%)

Query: 5   LLSTLANIPLPRIILLNISGVIVCFLMI----QHVGGYPPCDLCIQEQKIYYFGFLIALV 60
           +L  L      R   L ++   +   +     QHV    P  LCI E+   +     AL+
Sbjct: 1   MLRFLNQASQGRGAWLLMAFTALALELTALWFQHVMLLKPSVLCIYERVALFGVLGAALI 60

Query: 61  ADLSTRNHNSYWSTRLLLMTLGLLMFFNMTISVIHVGIECGIWEKNAICMNNSKIESITS 120
             +            + ++      F  + ++  H  ++                E    
Sbjct: 61  GAI----APKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPE--WL 114

Query: 121 TVDLLTQMEQENIPSCNKTTLYVLGLSLAFWNIIVSFFLSFITSIAMLKISRKK 174
            +D            C +     LGL +  W + +      +  + ++    K 
Sbjct: 115 PLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLVVISQPFKA 168


>3ddj_A CBS domain-containing protein; NP_344512.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: AMP; 1.80A {Sulfolobus solfataricus}
           (A:1-103,A:206-232)
          Length = 130

 Score = 29.9 bits (67), Expect = 0.19
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 108 ICMNNSKIESITSTVDLLTQMEQENIPSCNKTTLYVLG 145
           I + N KIE + +T DLL+ +E     SC++  LY + 
Sbjct: 54  IIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHIS 91


>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A
           {Geobacillus stearothermophilus} (A:1-245)
          Length = 245

 Score = 28.2 bits (62), Expect = 0.62
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 7/101 (6%)

Query: 30  LMIQHVGGYPPCDLCIQEQKIYYFGFLIALVADLS--TRNHNSYWSTRLLLMTLGLLMFF 87
           L I H+          Q             V   +    + +   S R L     +  + 
Sbjct: 44  LHIGHLATILTMRRFQQAGHRPIAL-----VGGATGLIGDPSGKKSERTLNAKETVEAWS 98

Query: 88  NMTISVIHVGIECGIWEKNAICMNNSKIESITSTVDLLTQM 128
                 +   ++       A   NN         +  L  +
Sbjct: 99  ARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDV 139


>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six
           helix bundle, apoptosis; NMR {Cricetulus griseus} (A:)
          Length = 130

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 113 SKIESITSTVDLLTQMEQENIPSCNKTTL 141
            K E IT+     + +E  N    +  + 
Sbjct: 34  EKSEEITTGSAWFSFLESHNKLDKDNLSY 62


>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
           crystallography, beta-propeller, structure, mRNA export,
           NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
           PDB: 3fmo_A* 3fmp_A* 3fhc_A (A:16-148,A:348-434)
          Length = 220

 Score = 25.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 13  PLPRIILLNISGVIVCFLMIQHVGGYP 39
           P P ++LL+  GV+  F MI    G  
Sbjct: 171 PAPVLMLLSTDGVLCPFYMINQNPGVK 197


>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10;
          apoptosis, inflammation, structural genomics, NPPSFA;
          NMR {Mus musculus} (A:)
          Length = 115

 Score = 24.3 bits (53), Expect = 8.9
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 1  MIKSLLSTLANIPLPRIILLNISGVIVCFLMIQHVGGYPPCDLCIQ 46
           +K  L  +    L R  L ++S V +   +I   G      +  +
Sbjct: 34 TLKFHLRDVTQFHLARGELESLSQVDLASKLISMYGAQEAVRVVSR 79


>1ytm_A Phosphoenolpyruvate carboxykinase [ATP],
           phosphoenolpyruvate; domain closure, nucleotide binding;
           HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens}
           PDB: 1yvy_A (A:202-276,A:338-532)
          Length = 270

 Score = 24.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 27  VCFLMIQHVGGYPPCDLCIQEQKIYYF 53
           V FL     G  PP  +  +EQ  YYF
Sbjct: 89  VIFLSADAFGVLPPVSILSKEQTKYYF 115


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.329    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,218,401
Number of extensions: 47278
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 13
Length of query: 174
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 91
Effective length of database: 2,150,234
Effective search space: 195671294
Effective search space used: 195671294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.7 bits)