RPSBLAST alignment for GI: 255764467 and conserved domain: TIGR02203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571
Score = 62.8 bits (153), Expect = 2e-10
Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 28/306 (9%)
Query: 248 SSILGIGAWLVIHQKLSAGAIIATSIITARA--MAPLEQIINSKKSLNVGLKSLKYLINL 305
+ +L I + L+AG T+ ITA + PL+ + N + GL + + L L
Sbjct: 253 AVVLFIALFQAQAGSLTAGDF--TAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTL 310
Query: 306 NDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAG 365
D ++ E + +N+ FR R ++S I G + G
Sbjct: 311 LDSPPEKDTGTRAIERARGDVE-----FRNVTFRYPGRDRPALDSISLVIEPGETVALVG 365
Query: 366 PSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITEN 425
SG GKS + + + G I ++ + Q+ +SQ LF +I N
Sbjct: 366 RSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425
Query: 426 IILSH-DQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV-------QKIRL 477
I +Q ++ + + L G T I N V Q++ +
Sbjct: 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT-----PIGENGVLLSGGQRQRLAI 480
Query: 478 SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI------ISHDPTIISM 531
+R + + IL++DE LDNE++ L++ + + T+VI I I+ M
Sbjct: 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540
Query: 532 SDFSLI 537
D ++
Sbjct: 541 DDGRIV 546