RPSBLAST alignment for GI: 255764467 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score =  294 bits (754), Expect = 4e-80
 Identities = 146/542 (26%), Positives = 252/542 (46%), Gaps = 12/542 (2%)

Query: 18  FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRS 77
           F I  L SF INIL L  PLYM+ +YD V+ + S   L+ L+ + L LY      D +RS
Sbjct: 8   FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRS 67

Query: 78  RLLIESSHLIERFFKPYIITVTKKY---EMDGTSLFSIISSLDQLKQFITSPVLPALLDI 134
            +L+     ++      I   +            L   +  LDQL+QF+T P L A  D 
Sbjct: 68  FVLVRIGEKLDGALNQPIFAASFSATLRRGKIDGL-QALRDLDQLRQFLTGPGLFAFFDA 126

Query: 135 LFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFGKAI 194
            + PI++++ F +HP +G  A+   ++L+ + +L     ++  +   ++     N   + 
Sbjct: 127 PWMPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSA 186

Query: 195 LHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIG 254
           L N+E I A      L   W +  +     QS  + +     +++K  R+ LQS +LG+G
Sbjct: 187 LRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246

Query: 255 AWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNS 314
           A+L I  +++ G +IA SI+  RA+AP++  I   K  +   ++ K L        LL +
Sbjct: 247 AYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRL------NELLAN 300

Query: 315 SDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
             S+   + +      ++ +N+        +   + +SF +  G    I GPSG GKS  
Sbjct: 301 YPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTL 360

Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNS 434
              ++G+     G++      + +   E F   IGYL Q   LFP ++ ENI    +   
Sbjct: 361 ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENAD 420

Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDE 492
                + AK+ G HE IL L +GY T         +  Q+  I L+R +  +P ++++DE
Sbjct: 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480

Query: 493 PLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDI 552
           P  +LD E +      +K  K    T+V+I+H P+++   D  L+    + + FG   ++
Sbjct: 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540

Query: 553 FK 554
             
Sbjct: 541 LA 542