RPSBLAST alignment for GI: 255764467 and conserved domain: TIGR01846
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694
Score = 132 bits (333), Expect = 3e-31
Identities = 124/544 (22%), Positives = 232/544 (42%), Gaps = 48/544 (8%)
Query: 6 YSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQ--SKINLIALSTITL 63
+ ++ Y F +L S + + L PL + D V+ + S ++++AL+ + +
Sbjct: 130 FIPAIIR-YRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAV 188
Query: 64 FLYALFFGFDLIRSRLLIESSHLIE-----RFFKPYI---ITVTKKYEMDGTSLFSIISS 115
++ G +R+ L + I+ R ++ + + + + T + +
Sbjct: 189 AIFEPALG--GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT--VARVRE 244
Query: 116 LDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQAN--N 173
L+Q++ F+T L +LD+LF +F+ + F P L + ++ ++ + +F
Sbjct: 245 LEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL-TGVVIGSLVCYALLSVFVGPILR 303
Query: 174 ERLERRYKKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRA----TSQEYQSL-- 227
+R+E ++++S +++ E I A +T W+++ A S +L
Sbjct: 304 KRVEDKFERSAAATSFLVESV-TGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362
Query: 228 IAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAP---LEQ 284
IA + I + + L + +L GA LVI LS G ++A +++ R P L Q
Sbjct: 363 IAGQ---AIELIQKLTFAI---LLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQ 416
Query: 285 IINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTS 344
+ + + L+ L ++N + S ++ IT +NI FR S
Sbjct: 417 LWQDFQQTGIALERLGDILN----SPTEPRSAGL---AALPELRGAITFENIRFRYAPDS 469
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
+ NL+ I G I GPSG GKS + L T + G + ++
Sbjct: 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529
Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
Q+G + Q LF SI +NI L + AK+ G H+ I L GY T
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV-- 587
Query: 465 DEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520
E N+ Q+I ++R + NP IL+ DE LD E++ +++ +T++
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG-RTVI 646
Query: 521 IISH 524
II+H
Sbjct: 647 IIAH 650