RPSBLAST alignment for GI: 255764467 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 161 bits (411), Expect = 3e-40
Identities = 125/556 (22%), Positives = 227/556 (40%), Gaps = 85/556 (15%)
Query: 22 ILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALF-FGFDLIRSRL- 79
++ S IN+L L +PL++M++YD V+ Q+ L L+ I + L +F F +RS
Sbjct: 153 LIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLA-IGVALAIVFDFVLKTLRSYFL 211
Query: 80 --------LIESSHLIERFFKPYIITVTKKYEMDGT-SLFSIISSLDQLKQFITSPVLPA 130
LI S+ L ER ++ + + S + + + ++ F TS L A
Sbjct: 212 DVAGKKADLILSAKLFER-----VLGLRMEARPASVGSFANQLREFESVRDFFTSATLTA 266
Query: 131 LLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILF----QANNERL-ERRYKKSRQ 185
L+D+ F +F+++ I+G + ++ + + +L Q RL E ++S Q
Sbjct: 267 LIDLPFALLFLLVIA----IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQ 322
Query: 186 DEINFGKAILHNS----EYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKT 241
A+L S E I A + W + A + ++ ++
Sbjct: 323 RN-----AVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG--LKSRFLSNLATNFA 375
Query: 242 LRMTLQSSILGI--GAWLVIHQKLSAGAIIATSIITARAMAPLEQII-------NSKKSL 292
+ S+ + G +L+ +L+ G +IA +++ RA+APL Q+ +K +L
Sbjct: 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTAL 435
Query: 293 NVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLS 352
+L++ L + I +N+ F N+S
Sbjct: 436 Q----------SLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVS 485
Query: 353 FTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDFIEKFSAQIG 409
TI G I G G GKS L +LGL +G++ RQI + IG
Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL---RRNIG 542
Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469
Y+ Q LF ++ +NI L + A++ G E + +G
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDM--------- 593
Query: 470 NIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
+ Q + L+R + +P ILL+DEP +DN ++ F LK++ K
Sbjct: 594 -QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GK 651
Query: 518 TIVIISHDPTIISMSD 533
T+V+++H +++ + D
Sbjct: 652 TLVLVTHRTSLLDLVD 667