RPSBLAST alignment for GI: 255764467 and conserved domain: TIGR03796
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710
Score = 97.3 bits (243), Expect = 9e-21
Identities = 99/444 (22%), Positives = 170/444 (38%), Gaps = 62/444 (13%)
Query: 113 ISSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITIL-FQA 171
+ DQ+ +F++ + LD + + +L P+L L GI I +L Q
Sbjct: 257 VQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT----LIGIAFAAINVLALQL 312
Query: 172 NNERLERRYKKSRQDEINFGKAI------LHNSEYIYAPSTRDFLLTYWNKKRATS-QEY 224
+ R ++ +QD GK L + E + A + W +A
Sbjct: 313 VSRRRVDANRRLQQDA---GKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQ 369
Query: 225 QSLIAKKYYFGISVTKTLRMTLQS-SILGIGAWLVIHQKLSAGAIIATSIITARAMAPLE 283
Q L G V TL +L S IL +G V+ +L+ G ++A + + + P+
Sbjct: 370 QELGVLTQILG--VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVN 427
Query: 284 QIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNT---------ITAK 334
++ +L L+ +LN +L + + + + +
Sbjct: 428 NLVGFGGTLQ-ELEG-----DLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481
Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF--LLCMLGLLTLEKGTISFG 392
NI F + +N S T+ G + G SG GKS L+ GL G I F
Sbjct: 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA--GLYQPWSGEILFD 539
Query: 393 DR---QISRDFIEKFSAQIGYLSQHCSLFPISITENIIL---SHDQNSLHIAQKTAKIVG 446
+I R+ + + + + Q LF ++ +N+ L + L A K A I
Sbjct: 540 GIPREEIPREVL---ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAI-- 594
Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNN 504
H+ I S GY + Q+ RL +R + NP+IL++DE LD E +
Sbjct: 595 -HDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE-- 651
Query: 505 FYTLLKQFKENKK----TIVIISH 524
K +N + T +I++H
Sbjct: 652 -----KIIDDNLRRRGCTCIIVAH 670