RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] (565 letters) >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 294 bits (754), Expect = 4e-80 Identities = 146/542 (26%), Positives = 252/542 (46%), Gaps = 12/542 (2%) Query: 18 FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRS 77 F I L SF INIL L PLYM+ +YD V+ + S L+ L+ + L LY D +RS Sbjct: 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRS 67 Query: 78 RLLIESSHLIERFFKPYIITVTKKY---EMDGTSLFSIISSLDQLKQFITSPVLPALLDI 134 +L+ ++ I + L + LDQL+QF+T P L A D Sbjct: 68 FVLVRIGEKLDGALNQPIFAASFSATLRRGKIDGL-QALRDLDQLRQFLTGPGLFAFFDA 126 Query: 135 LFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFGKAI 194 + PI++++ F +HP +G A+ ++L+ + +L ++ + ++ N + Sbjct: 127 PWMPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSA 186 Query: 195 LHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIG 254 L N+E I A L W + + QS + + +++K R+ LQS +LG+G Sbjct: 187 LRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 Query: 255 AWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNS 314 A+L I +++ G +IA SI+ RA+AP++ I K + ++ K L LL + Sbjct: 247 AYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRL------NELLAN 300 Query: 315 SDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 S+ + + ++ +N+ + + +SF + G I GPSG GKS Sbjct: 301 YPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTL 360 Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNS 434 ++G+ G++ + + E F IGYL Q LFP ++ ENI + Sbjct: 361 ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENAD 420 Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDE 492 + AK+ G HE IL L +GY T + Q+ I L+R + +P ++++DE Sbjct: 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480 Query: 493 PLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDI 552 P +LD E + +K K T+V+I+H P+++ D L+ + + FG ++ Sbjct: 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540 Query: 553 FK 554 Sbjct: 541 LA 542 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 161 bits (411), Expect = 3e-40 Identities = 125/556 (22%), Positives = 227/556 (40%), Gaps = 85/556 (15%) Query: 22 ILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALF-FGFDLIRSRL- 79 ++ S IN+L L +PL++M++YD V+ Q+ L L+ I + L +F F +RS Sbjct: 153 LIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLA-IGVALAIVFDFVLKTLRSYFL 211 Query: 80 --------LIESSHLIERFFKPYIITVTKKYEMDGT-SLFSIISSLDQLKQFITSPVLPA 130 LI S+ L ER ++ + + S + + + ++ F TS L A Sbjct: 212 DVAGKKADLILSAKLFER-----VLGLRMEARPASVGSFANQLREFESVRDFFTSATLTA 266 Query: 131 LLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILF----QANNERL-ERRYKKSRQ 185 L+D+ F +F+++ I+G + ++ + + +L Q RL E ++S Q Sbjct: 267 LIDLPFALLFLLVIA----IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQ 322 Query: 186 DEINFGKAILHNS----EYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKT 241 A+L S E I A + W + A + ++ ++ Sbjct: 323 RN-----AVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG--LKSRFLSNLATNFA 375 Query: 242 LRMTLQSSILGI--GAWLVIHQKLSAGAIIATSIITARAMAPLEQII-------NSKKSL 292 + S+ + G +L+ +L+ G +IA +++ RA+APL Q+ +K +L Sbjct: 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTAL 435 Query: 293 NVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLS 352 +L++ L + I +N+ F N+S Sbjct: 436 Q----------SLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVS 485 Query: 353 FTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDFIEKFSAQIG 409 TI G I G G GKS L +LGL +G++ RQI + IG Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL---RRNIG 542 Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469 Y+ Q LF ++ +NI L + A++ G E + +G Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDM--------- 593 Query: 470 NIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517 + Q + L+R + +P ILL+DEP +DN ++ F LK++ K Sbjct: 594 -QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GK 651 Query: 518 TIVIISHDPTIISMSD 533 T+V+++H +++ + D Sbjct: 652 TLVLVTHRTSLLDLVD 667 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 132 bits (333), Expect = 3e-31 Identities = 124/544 (22%), Positives = 232/544 (42%), Gaps = 48/544 (8%) Query: 6 YSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQ--SKINLIALSTITL 63 + ++ Y F +L S + + L PL + D V+ + S ++++AL+ + + Sbjct: 130 FIPAIIR-YRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAV 188 Query: 64 FLYALFFGFDLIRSRLLIESSHLIE-----RFFKPYI---ITVTKKYEMDGTSLFSIISS 115 ++ G +R+ L + I+ R ++ + + + + T + + Sbjct: 189 AIFEPALG--GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT--VARVRE 244 Query: 116 LDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQAN--N 173 L+Q++ F+T L +LD+LF +F+ + F P L + ++ ++ + +F Sbjct: 245 LEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL-TGVVIGSLVCYALLSVFVGPILR 303 Query: 174 ERLERRYKKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRA----TSQEYQSL-- 227 +R+E ++++S +++ E I A +T W+++ A S +L Sbjct: 304 KRVEDKFERSAAATSFLVESV-TGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 Query: 228 IAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAP---LEQ 284 IA + I + + L + +L GA LVI LS G ++A +++ R P L Q Sbjct: 363 IAGQ---AIELIQKLTFAI---LLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQ 416 Query: 285 IINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTS 344 + + + L+ L ++N + S ++ IT +NI FR S Sbjct: 417 LWQDFQQTGIALERLGDILN----SPTEPRSAGL---AALPELRGAITFENIRFRYAPDS 469 Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 + NL+ I G I GPSG GKS + L T + G + ++ Sbjct: 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 Q+G + Q LF SI +NI L + AK+ G H+ I L GY T Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV-- 587 Query: 465 DEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520 E N+ Q+I ++R + NP IL+ DE LD E++ +++ +T++ Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG-RTVI 646 Query: 521 IISH 524 II+H Sbjct: 647 IIAH 650 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 108 bits (273), Expect = 3e-24 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 5/206 (2%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + + + +SFT+P G + GPSG GKS L +LG + +G+I+ Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 Query: 391 FGDRQISRDFIEKF-SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449 + D QI ++ QH LF +I ENI L+ S ++ + G E Sbjct: 381 VNGVPL-ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDE 439 Query: 450 DILSLKNGYQTTYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 + +L G T + Q++ L+R + +LL+DEP HLD E + Sbjct: 440 FVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499 Query: 508 LLKQFKENKKTIVIISHDPTIISMSD 533 L+ + +T+++++H + +D Sbjct: 500 ALRALAQG-RTVLLVTHRLALAERAD 524 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 97.3 bits (243), Expect = 9e-21 Identities = 99/444 (22%), Positives = 170/444 (38%), Gaps = 62/444 (13%) Query: 113 ISSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITIL-FQA 171 + DQ+ +F++ + LD + + +L P+L L GI I +L Q Sbjct: 257 VQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT----LIGIAFAAINVLALQL 312 Query: 172 NNERLERRYKKSRQDEINFGKAI------LHNSEYIYAPSTRDFLLTYWNKKRATS-QEY 224 + R ++ +QD GK L + E + A + W +A Sbjct: 313 VSRRRVDANRRLQQDA---GKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQ 369 Query: 225 QSLIAKKYYFGISVTKTLRMTLQS-SILGIGAWLVIHQKLSAGAIIATSIITARAMAPLE 283 Q L G V TL +L S IL +G V+ +L+ G ++A + + + P+ Sbjct: 370 QELGVLTQILG--VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVN 427 Query: 284 QIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNT---------ITAK 334 ++ +L L+ +LN +L + + + + + Sbjct: 428 NLVGFGGTLQ-ELEG-----DLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481 Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF--LLCMLGLLTLEKGTISFG 392 NI F + +N S T+ G + G SG GKS L+ GL G I F Sbjct: 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA--GLYQPWSGEILFD 539 Query: 393 DR---QISRDFIEKFSAQIGYLSQHCSLFPISITENIIL---SHDQNSLHIAQKTAKIVG 446 +I R+ + + + + Q LF ++ +N+ L + L A K A I Sbjct: 540 GIPREEIPREVL---ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAI-- 594 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNN 504 H+ I S GY + Q+ RL +R + NP+IL++DE LD E + Sbjct: 595 -HDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE-- 651 Query: 505 FYTLLKQFKENKK----TIVIISH 524 K +N + T +I++H Sbjct: 652 -----KIIDDNLRRRGCTCIIVAH 670 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 93.1 bits (232), Expect = 2e-19 Identities = 114/520 (21%), Positives = 203/520 (39%), Gaps = 72/520 (13%) Query: 18 FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFG---FDL 74 + +L + P+ + + I + L+ I L L A G F L Sbjct: 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ---IALALLAAAVGAAAFQL 194 Query: 75 IRS----RL--LIESS----------HLIERFFKPYIITVTKKYEMDGTS--LFSIISSL 116 +S RL +++S L FF+ Y ++ L S + Sbjct: 195 AQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY------------STGDLASRAMGI 242 Query: 117 DQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERL 176 Q+++ ++ L LL +F + + L F L A+ ++ + +T++ R Sbjct: 243 SQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK 302 Query: 177 ERRYKKSRQDEIN-------FGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIA 229 ERR +I+ G + L + R F W K + ++ + L A Sbjct: 303 ERR-LLELSGKISGLTVQLINGISKLR----VAGAENRAF--ARWAKLFSRQRKLE-LSA 354 Query: 230 KKYYFGISVTKTLRMTLQSSIL-GIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINS 288 ++ ++V + L S+ L L+ LS G+ +A + + Q+ N+ Sbjct: 355 QRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNT 414 Query: 289 KKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLIC 348 S+ + + + L ++K +P +LS I + FR + LI Sbjct: 415 LISILAVIPLWERAKPI--LEALPEVDEAKTDP--GKLSGA-IEVDRVTFRYRPDGPLIL 469 Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++S I G I GPSG GKS L +LG T E G++ + + ++ ++ Q+ Sbjct: 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 Query: 409 GYLSQHCSLFPISITENII----LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 G + Q+ L SI ENI L+ D+ A + A++ G EDI ++ G T Sbjct: 530 GVVLQNGRLMSGSIFENIAGGAPLTLDE-----AWEAARMAGLAEDIRAMPMGMHTVI-- 582 Query: 465 DEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNE 500 E + Q++ ++R + P ILL DE LDN Sbjct: 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 87.1 bits (216), Expect = 1e-17 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 11/296 (3%) Query: 242 LRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKY 301 ++ L IL GA+LV+ KL+ G +I + + + + PLE IIN L L++ + Sbjct: 388 TKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN----LQPKLQAARV 443 Query: 302 LINLNDFTTLLNSSDSKKEPIS-MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360 N + L++S K+ + + N I ++ + S ++ ++S TI S Sbjct: 444 ANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNIL-SDISLTIKMNSK 502 Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420 I G SG GKS ++G G I + I YL Q +F Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG 562 Query: 421 SITENIILSHDQN-SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS- 478 SI EN++L +N S +I +DI ++ GYQT + + QK R++ Sbjct: 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 Query: 479 -RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533 R + + +L++DE +LD + L ++ KTI+ ++H ++ SD Sbjct: 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLSVAKQSD 676 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 79.7 bits (197), Expect = 2e-15 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 4/179 (2%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 +S +P G I GPSG GKS L+ + GLL +G ++ +S ++ +I Sbjct: 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS-SLQDELRRRIS 411 Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469 +Q LF ++ +N+ L + + VG + + SL +G T Sbjct: 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 Query: 470 N--IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDP 526 + Q++ L+R + + ILL+DEP HLD ++ L + KT+V+I+H Sbjct: 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA-ALSGKTVVVITHHL 529 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 79.6 bits (197), Expect = 2e-15 Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 41/230 (17%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCM--LGLLTLE---KGTISFGDRQISRDFIEK 403 +N++ IP+ + GPSGCGKS L + + L +G + F + I I+ Sbjct: 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 Query: 404 FS--AQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVG-------- 446 ++G + Q + FP+SI +NI D+ L I +++ K Sbjct: 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR 137 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 H+ L L G Q Q++ ++R +A P +LL+DEP LD A Sbjct: 138 LHDSALGLSGGQQ-------------QRLCIARALAVEPEVLLLDEPTSALDPIATGKIE 184 Query: 507 TLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIF 553 L+++ K+ TIVI++H+ +SD + F+ G L +G T+ IF Sbjct: 185 ELIQELKKK-YTIVIVTHNMQQAARISDRTAFFY--DGELVEYGPTEQIF 231 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 78.8 bits (194), Expect = 4e-15 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 36/199 (18%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNF---LLCMLGLLTLEK--GTISFGDRQISRDFIE- 402 +N++ +IPE I GPSGCGKS F L M+ ++ K G +++ I + ++ Sbjct: 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 Query: 403 -KFSAQIGYLSQHCSLFPISITENII-------LSHDQNSLHIAQKTAKIVG-------- 446 + IG + Q + FP SI +N+ + + I +K+ K V Sbjct: 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR 148 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 H LSL G Q Q++ ++R +A NP +LLMDEP LD + Sbjct: 149 LHTQALSLSGGQQ-------------QRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195 Query: 507 TLLKQFKENKKTIVIISHD 525 L+ + KE K TIVI++H+ Sbjct: 196 ELILKLKE-KYTIVIVTHN 213 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 78.3 bits (193), Expect = 5e-15 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 +++ +P GS + GPSG GKS L + GL + G I + +R +IG Sbjct: 18 DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--RKIG 75 Query: 410 YLSQHCSLFP-ISITENI-----ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463 ++ QH +LF +++ +NI I H + A+ A++ E++L L Q Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPK-----AKIKARV----EELLEL---VQLEGL 123 Query: 464 SDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-T 518 D P + Q++ L+R +A P +LL+DEP LD + + + L++ + T Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183 Query: 519 IVIISHD 525 V ++HD Sbjct: 184 TVFVTHD 190 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 77.8 bits (191), Expect = 7e-15 Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 46/253 (18%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE----- 385 I N+ F ++ I + +S I + I GPSGCGKS FL C+ + LE Sbjct: 8 IKVNNLSF--YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65 Query: 386 KGTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443 +G + F ++ I R + + Q+ + +LFP+S+ +N+ K Sbjct: 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG------------VK 113 Query: 444 IVGCH-----EDILSLKNGYQTTYCSDEIPYNI-----------VQKIRLSRIIANNPAI 487 IVG +DI +++ + DEI + I Q++ ++R +A P + Sbjct: 114 IVGWRPKLEIDDI--VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKV 171 Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFK-ENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL 545 LLMDEP + LD A +L++ + ++ T+VI+SH+ + +SDF+ F + + Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI 231 Query: 546 -----FGLTQDIF 553 FGLT+ IF Sbjct: 232 GQLVEFGLTKKIF 244 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 77.7 bits (192), Expect = 7e-15 Identities = 43/196 (21%), Positives = 99/196 (50%), Gaps = 11/196 (5%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFI 401 + + +++ I G I+ GPSG GK+ L + GL ++++G++ +++ S + Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77 Query: 402 EKFSAQIGYLSQHCSLFPISIT--ENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN-GY 458 + IGY+ Q +L +T +N+ ++ + +++ + A+ +L G Sbjct: 78 VQLRRNIGYIFQAHNLLG-FLTARQNVQMALELQP-NLSYQEARE--RARAMLEAVGLGD 133 Query: 459 QTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKK 517 Y + Q++ ++R + + P ++L DEP LD+++ + L+++ +E Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193 Query: 518 TIVIISHDPTIISMSD 533 TI+I++HD I+ ++D Sbjct: 194 TILIVTHDNRILDVAD 209 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 76.6 bits (188), Expect = 2e-14 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 38/233 (16%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQISRDFI 401 + + +LS I G + G SGCGK+ L + G + G I+ DR ++ Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH--A 74 Query: 402 EKFSAQIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQKTA---KIVG----CHED 450 + L Q+ +LFP + + +N+ + + IA++ A K+VG Sbjct: 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL 134 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 L G Q Q+I ++R IA P +LL+DEPL LD + N + Sbjct: 135 PAQLSGGMQ-------------QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 Query: 511 QFKEN--KKTIVIISHDPT--------IISMSDFSLIFHPIQGSLFGLTQDIF 553 E + TI+ ++HD M D L H +L+ D F Sbjct: 182 ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 74.8 bits (184), Expect = 6e-14 Identities = 60/247 (24%), Positives = 117/247 (47%), Gaps = 32/247 (12%) Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 M N+ I KN+ F+ + + +++SF IP+G I G +G GKS M+G+ Sbjct: 1 MEDKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHC-SLFPISIT--------ENIILSHDQNS 434 ++ G I + ++ I+ D EK IG + Q+ + F SI EN + +D+ Sbjct: 61 VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120 Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLM 490 +++ +LK E P + Q++ ++ ++A NP+++++ Sbjct: 121 RRVSE-------------ALKQVDMLERADYE-PNALSGGQKQRVAIAGVLALNPSVIIL 166 Query: 491 DEPLYHLDNEAKNNFYTLLKQFKENKK-TIVIISHDPTIISMSDFSLIFHPIQGSLF--G 547 DE LD +A+ N L+++ K TI+ I+HD + +D ++ + +G+++ G Sbjct: 167 DEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMN--KGTVYKEG 224 Query: 548 LTQDIFK 554 +IF Sbjct: 225 TPTEIFD 231 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 74.2 bits (183), Expect = 9e-14 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 30/209 (14%) Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL-TLEKGTISFGDR---QI 396 K ++I +L+ TI +G I G SG GKS LL ++GLL + G + + + Sbjct: 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKST-LLNIIGLLEKFDSGQVYLNGKETPPL 65 Query: 397 SRDFIEKF-SAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC------- 447 + KF ++GYL Q+ +L ++ EN+ L L +K K Sbjct: 66 NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN 125 Query: 448 ---HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 + I L G Q Q++ L+R I +P ++L DEP LD + ++ Sbjct: 126 LKLKQKIYELSGGEQ-------------QRVALARAILKDPPLILADEPTGSLDPKNRDE 172 Query: 505 FYTLLKQFKENKKTIVIISHDPTIISMSD 533 LL + + KTI+I++HDP + +D Sbjct: 173 VLDLLLELNDEGKTIIIVTHDPEVAKQAD 201 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 74.0 bits (182), Expect = 1e-13 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 3/189 (1%) Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397 F +T +N++FT+ G I GP+G GKS L + + +G I F D ++ Sbjct: 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT 380 Query: 398 RDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG 457 + ++ + +++ +SQ LF ++ NI L + + A++ H+DIL L G Sbjct: 381 KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQG 440 Query: 458 YQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 Y T + + QK R+S R + N IL++D+ L +D ++ L+Q+ E Sbjct: 441 YDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE- 499 Query: 516 KKTIVIISH 524 +T++I +H Sbjct: 500 GRTVIISAH 508 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 73.6 bits (181), Expect = 1e-13 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 15/208 (7%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I + + + NL+F I +G + G SG GKS FL +LG+ +G I Sbjct: 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 Query: 391 FGDRQISR---DFIEKFSAQIGYLSQ-HCSLFPISITENIILSHDQNSLHIAQKTAK--- 443 F + ++R I IG + Q H L ++ +N+ L I + Sbjct: 62 FNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP-----LRIIGVPPRDAN 116 Query: 444 -IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 V + + L+ + ++ Q++ ++R I + P +LL DEP +LD E Sbjct: 117 ERVSAALEKVGLEG--KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 Query: 503 NNFYTLLKQFKENKKTIVIISHDPTIIS 530 + L ++F T+++ +HD ++ Sbjct: 175 RDIMRLFEEFNRRGTTVLVATHDINLVE 202 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 73.3 bits (180), Expect = 1e-13 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 43/270 (15%) Query: 309 TTLLNSSDSKKEPISMRLSNNTITAKNI-VFRDKKTSRLICQNLSFTIPEGSCCIIAGPS 367 TT +++D +P + I A+++ VF + + ++S IPE + GPS Sbjct: 19 TTATDTTDPSGDPAASS-GETVIEARDLNVFYGDEQA---LDDVSMDIPENQVTAMIGPS 74 Query: 368 GCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDFIEKFS--AQIGYLSQHCSLFPI 420 GCGKS FL C M L+ + G ++F + + ++ + +IG + Q + FP Sbjct: 75 GCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK 134 Query: 421 SITENI-----ILSHDQNSLHIAQKTAKIVG--------CHEDILSLKNGYQTTYCSDEI 467 SI +N+ I +D + +++ + L L G Q Sbjct: 135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ-------- 186 Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-P 526 Q++ ++R IA +P ++LMDEP LD A + L+++ E T+VI++H+ Sbjct: 187 -----QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ 240 Query: 527 TIISMSDFSLIFHPIQGSL--FGLTQDIFK 554 +SD + +F G L F T IF+ Sbjct: 241 QAARISDKTAVFL-TGGELVEFDDTDKIFE 269 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 72.6 bits (178), Expect = 2e-13 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 22/198 (11%) Query: 341 KKT-SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR- 398 KKT + + I +G +I G SG GKS + + L+ G I I + Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60 Query: 399 ---DFIEKFSAQIGYLSQHCSLFP-ISITENIILS------HDQNSLHIAQKTAKIVGCH 448 + E +IG + Q +LFP ++I +N L +Q A + K+VG Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120 Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 E Y+ Y DE+ + Q++ L+R +A P ILLMDE LD +++ Sbjct: 121 E--------YEHRY-PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 Query: 509 LKQFKEN-KKTIVIISHD 525 LK+ + +KTIV I+HD Sbjct: 172 LKKLQATLQKTIVFITHD 189 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 72.5 bits (178), Expect = 3e-13 Identities = 47/204 (23%), Positives = 104/204 (50%), Gaps = 14/204 (6%) Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 +N I +++ FR K ++ + + LS +IPEGS + GP+G GKS LL + G+ ++G Sbjct: 2 DNIIEVEDLHFRYKDGTKAL-KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHC--SLFPISITENIILSHDQNSLHIAQKTAKIV 445 + R+++ + + +++G + Q +F ++ +++ L + ++ Sbjct: 61 RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV- 119 Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIV--QKIR--LSRIIANNPAILLMDEPLYHLDNEA 501 E+ L + D+ PY++ QK R ++ ++A +P ++++DEP+ +LD Sbjct: 120 ---EEALKAVRMWDF---RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173 Query: 502 KNNFYTLLKQFKENKKTIVIISHD 525 + +L + KT+++ +HD Sbjct: 174 QETLMEILDRLHNQGKTVIVATHD 197 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 72.2 bits (177), Expect = 3e-13 Identities = 76/292 (26%), Positives = 123/292 (42%), Gaps = 13/292 (4%) Query: 250 ILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFT 309 IL IG LVI +LS G +IA + L+Q+ + ++ L DF Sbjct: 257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQM---SGFITQIFEARA---KLEDFF 310 Query: 310 TLLNSSDSKKEPISMR-LSN--NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366 L +S ++EP L N + ++I F +S+ + ++SF G I GP Sbjct: 311 DLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGP 369 Query: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426 +G GK+ + + + G I I+ E I + Q LF SI ENI Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429 Query: 427 ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS--DEIPYNIVQKIRLSRIIANN 484 L + + + AK H+ IL NGY T + + Q++ ++R I N Sbjct: 430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSL 536 IL++DE LD E + + ++N+ T II+H + + +D L Sbjct: 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTF-IIAHRLSTVRNADLVL 540 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 70.9 bits (174), Expect = 8e-13 Identities = 69/241 (28%), Positives = 105/241 (43%), Gaps = 62/241 (25%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC------------MLGLLTLEKGTISFGDRQI 396 ++ IPE + GPSGCGKS FL C + G +TL+ I D ++ Sbjct: 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY--DPRL 93 Query: 397 SRDFIEKFSAQIGYLSQHCSLFPISITENII-------LSHDQNSLH-IAQKTAKIVG-- 446 D +E A++G + Q + FP SI EN+ L+ + L I + + + G Sbjct: 94 --DVVE-LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLW 150 Query: 447 ------CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE 500 HE L G Q Q++ ++R IA +P ++LMDEP LD Sbjct: 151 EEVKDRLHEPGTGLSGGQQ-------------QRLCIARAIAVSPEVILMDEPCSALDPI 197 Query: 501 AKNNFYTLLKQFKENKKTIVIISHDPTIISM------SDFSLIFHPIQGSL--FGLTQDI 552 A L+ + ++N TIVI++H SM S + FH G+L G T+ + Sbjct: 198 ATAKVEELIDELRQN-YTIVIVTH-----SMQQAARVSQRTAFFH--LGNLVEVGDTEKM 249 Query: 553 F 553 F Sbjct: 250 F 250 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 70.8 bits (174), Expect = 9e-13 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 40/200 (20%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406 I +LS ++P G + GP+GCGKS L C LLT + GT+ GD+ IS S+ Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS-----MLSS 71 Query: 407 QIGYLSQHCSLFP--------ISITENII------LSH-------DQNSLHIAQKTAKIV 445 + L++ +L P I++ E + LS D ++ A + +I Sbjct: 72 R--QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN 129 Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 + L+ +G Q Q+ L+ ++A + ++L+DEP +LD + Sbjct: 130 HLADRRLTDLSGGQR------------QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177 Query: 506 YTLLKQFKENKKTIVIISHD 525 L+++ KT+V + HD Sbjct: 178 MRLMRELNTQGKTVVTVLHD 197 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 70.2 bits (172), Expect = 1e-12 Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 22/198 (11%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----GTISFGDRQISRDFIE- 402 + +S IPE S + GPSGCGKS FL C+ + K G++ + I +D + Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 Query: 403 -KFSAQIGYLSQHCSLFPISITENIIL---SH-DQNSLHIAQKTAKIVGCHEDIL---SL 454 + ++G + Q + FP SI ENI H D N+ +A+ + ED L SL Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181 Query: 455 KNGYQTTYCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 + +D + N + Q++ ++R +A +P ++LMDEP LD A + Sbjct: 182 RQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241 Query: 508 LLKQFKENKKTIVIISHD 525 L+++ E T+V+++H+ Sbjct: 242 LIEELAEE-YTVVVVTHN 258 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 69.8 bits (171), Expect = 2e-12 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 37/218 (16%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 + I KN+V + + L + + G I GPSG GK+ L C+ L E GT Sbjct: 2 SAIEVKNLVKKFHGQTVL--HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59 Query: 389 ISFGDRQI--------SRDFIEKFSAQIGYLSQHCSLFP-ISITENII--------LSHD 431 I GD I + I + +G++ Q+ +LFP ++ ENII + Sbjct: 60 IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE 119 Query: 432 QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAI 487 + + + AK VG G +T+Y P + Q++ ++R +A P + Sbjct: 120 EATARARELLAK-VGL--------AGKETSY-----PRRLSGGQQQRVAIARALAMRPEV 165 Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 +L DEP LD E ++Q + K+T+VI++H+ Sbjct: 166 ILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 69.3 bits (169), Expect = 2e-12 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 42/230 (18%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----GTISFGDRQISR---DF 400 +N+S IP+ S + GPSGCGKS F+ C+ + L K G +S I D Sbjct: 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 Query: 401 IEKFSAQIGYLSQHCSLFPISITENIILS---HDQNSLHI------AQKTAKIVGCHED- 450 +E +G + Q + FP+SI +N+ H N + A ++A + D Sbjct: 89 VE-LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147 Query: 451 ----ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 LSL G Q C ++R +A P I+L DEP LD + Sbjct: 148 LKSPALSLSGGQQQRLC-------------IARTLAVKPKIILFDEPTSALDPISTARIE 194 Query: 507 TLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIF 553 L+ K++ TIVI++H+ +SD++ F + G L FG T+ IF Sbjct: 195 DLIMNLKKD-YTIVIVTHNMQQAARISDYTGFF--LMGELIEFGQTRQIF 241 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 69.0 bits (169), Expect = 3e-12 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 32/190 (16%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++++ T+ G ++ GPSGCGK+ L + G + + G+I+ + + A+ Sbjct: 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAER 72 Query: 409 GYLSQHCSLFP-ISITENIIL-------SHDQNSLHIAQKTAKIVGC----HEDILSLKN 456 G + Q+ L P ++ +N+ Q L IA + K VG I L Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-LEIAHQMLKKVGLEGAEKRYIWQLSG 131 Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKEN 515 G + Q++ ++R +A NP +LL+DEP LD + TLL + ++E Sbjct: 132 GQR-------------QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178 Query: 516 KKTIVIISHD 525 K +++I+HD Sbjct: 179 GKQVLLITHD 188 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 68.3 bits (167), Expect = 5e-12 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%) Query: 363 IAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-IS 421 + GPSGCGK+ L + G + G+I ++ I + Q +LFP ++ Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH--INMVFQSYALFPHMT 58 Query: 422 ITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQTTYCSDEIPYNIVQKIRLSR 479 + EN+ + A+ ++ + L L + ++ Q++ L+R Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRV----LEALRLVQLEEFADRKPH-QLSGGQQQRVALAR 113 Query: 480 IIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHDPT-IISMSD 533 + P ILL+DEPL LD + ++ LK +E T V ++HD ++MSD Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 68.3 bits (167), Expect = 6e-12 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 23/193 (11%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF--GDRQIS-------- 397 N S I EG C++ G SG GKS+ L + GL + +G++ GD I Sbjct: 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT 99 Query: 398 -RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLK 455 R ++ + Q +L P +++ EN+ + + A++ ++ ++ L L Sbjct: 100 LRRLRTH---RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRV----DEQLELV 152 Query: 456 N--GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 + E+ + Q++ L+R A + ILLMDEP LD + L + + Sbjct: 153 GLAQWADKK-PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 Query: 514 EN-KKTIVIISHD 525 KTI+ +SHD Sbjct: 212 AKLNKTIIFVSHD 224 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 67.9 bits (166), Expect = 6e-12 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 26/208 (12%) Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS---------AQIGYLSQHC 415 GPSGCGKS FL C + G+ I D I+ +S A++G + Q Sbjct: 38 GPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI--DGIDVYSVDTNVVLLRAKVGMVFQKP 95 Query: 416 SLFPISITENII-------LSHDQNSL-HIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467 + FP SI +N+ L+ ++ L I +K+ VG E+ L + + + E+ Sbjct: 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE---LGDRLKDSAF--EL 150 Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-P 526 Q++ ++R IA P +LLMDEP LD A N L+++ K+N TI++++H Sbjct: 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHSMK 209 Query: 527 TIISMSDFSLIFHPIQGSLFGLTQDIFK 554 +SD F + + TQ+IFK Sbjct: 210 QAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 67.8 bits (166), Expect = 7e-12 Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 66/248 (26%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR--QISRDFI---- 401 + FT+P I G SG GK+ + + GL ++G I R SR I Sbjct: 13 SLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPP 72 Query: 402 EKFSAQIGYLSQHCSLFP-ISITENII--LSHDQNSLHIAQKTAKIVGCHEDIL------ 452 EK +IGY+ Q LFP +S+ N+ + + S +++ ++L Sbjct: 73 EK--RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISF-ERVI----ELLGIGHLL 125 Query: 453 -----SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 L G + Q++ + R + ++P +LLMDEPL LD+ K Sbjct: 126 GRLPGRLSGGEK-------------QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172 Query: 508 LLKQF-KENKKTIVIISHDPT-------------------------IISMSDFSLIFHPI 541 L++ E I+ +SH + + D + Sbjct: 173 YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232 Query: 542 QGSLFGLT 549 QGSL Sbjct: 233 QGSLIEGV 240 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 67.8 bits (166), Expect = 7e-12 Identities = 44/227 (19%), Positives = 99/227 (43%), Gaps = 19/227 (8%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 + +N+ +++ K + + +S +I +G I G SG GKS L + GL G Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61 Query: 389 ISFGDRQISRDFIEKFSA----QIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQK 440 + F + +S+ + + ++G++ Q L P + EN+ +L ++ ++ Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121 Query: 441 TAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE 500 ++ + + ++ + E+ Q++ ++R + N P+++L DEP +LDN Sbjct: 122 AYEM------LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175 Query: 501 AKNNFYTLLKQFKENKKT-IVIISHDPTIISMSDFSLIFHPIQGSLF 546 + L+ + T ++++HD + + G LF Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELA--KKLDRVLEMKDGQLF 220 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 67.4 bits (164), Expect = 9e-12 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 32/245 (13%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE----- 385 I K++ F + + + +S I I GPSGCGKS F+ + + LE Sbjct: 8 IKVKDLSFYYNTSKAI--EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65 Query: 386 KGTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443 +G + F + I R I + QIG + Q + FP+SI EN+ + I+ K + Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAY-----GVRISAKLPQ 120 Query: 444 IVGCHEDIL--SLKNGYQTTYCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPL 494 ++I+ +LK D++ + + Q++ ++R +A P +LLMDEP Sbjct: 121 AD--LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL-----FGL 548 LD A L+ + ++ TI I++H+ +SDF+ F + + FG+ Sbjct: 179 SALDPIATMKVEELIHSLR-SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 Query: 549 TQDIF 553 T IF Sbjct: 238 TTQIF 242 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 67.4 bits (165), Expect = 9e-12 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 43/215 (20%) Query: 365 GPSGCGKSNFLLCM------LGLLTLEKGTISFGDRQISRDFIEKFS--AQIGYLSQHCS 416 GPSG GKS +L + + + + G I + I+R I + IG + Q + Sbjct: 53 GPSGSGKSTYLRSLNRMNDTIDIARVT-GQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 Query: 417 LFPISITENIILSHDQNSLHIAQKTAKIV---------------GCHEDILSLKNGYQTT 461 F SI ENI + ++ + + +IV H+ L+L G Q Sbjct: 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ-- 169 Query: 462 YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI 521 Q++ ++R IA P ILLMDEP LD + + + K+N TI+I Sbjct: 170 -----------QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-YTIII 217 Query: 522 ISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553 ++H+ + SD++ F+ G L + T++IF Sbjct: 218 VTHNMQQAARASDYTAFFY--LGDLIEYDKTRNIF 250 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 67.4 bits (165), Expect = 1e-11 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 40/203 (19%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS------RDFIEK 403 ++S ++ +G + GPSGCGK+ L + GL GTI G R I+ RD+ Sbjct: 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY--- 78 Query: 404 FSAQIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQKTAKI---VGCHEDILSLKN 456 G + Q +LFP +++ +NI + + +A++ A++ VG + + Sbjct: 79 -----GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG----LPGSER 129 Query: 457 GYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512 Y P + Q++ L+R +A +P +LL+DEPL LD + + T ++Q Sbjct: 130 KY---------PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180 Query: 513 KENKK-TIVIISHD-PTIISMSD 533 + T ++++HD +SM+D Sbjct: 181 QRRLGVTTIMVTHDQEEALSMAD 203 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 67.0 bits (164), Expect = 1e-11 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 25/220 (11%) Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 M+ ++ + +N+ + I N+SF++ G +I GPSGCGKS L + L++ Sbjct: 1 MQENSPLLQLQNVGYL--AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENII----LSHDQNSLHIAQ 439 GT+ F IS E + Q+ Y +Q +LF ++ +N+I + + Q I Sbjct: 59 PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL 118 Query: 440 KTAKIVGCHEDIL-----SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494 + + IL L G + Q+I L R + P +LL+DE Sbjct: 119 DDLERFALPDTILTKNIAELSGGEK-------------QRISLIRNLQFMPKVLLLDEIT 165 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVI-ISHDPTIISMSD 533 LD K+N ++ ++ + V+ ++HD I+ +D Sbjct: 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHAD 205 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 66.5 bits (162), Expect = 2e-11 Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 45/254 (17%) Query: 326 LSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL- 384 + IT+ ++ K L +L F + + GPSGCGKS +L + + L Sbjct: 1 EAKKIITSSDVHLFYGKFEALKGIDLDFN--QNEITALIGPSGCGKSTYLRTLNRMNDLI 58 Query: 385 ----EKGTISFGDRQI---SRDFIEKFSAQIGYLSQHCSLFPISITENIILS------HD 431 G +S + I + D ++ Q+G + Q + FP SI EN+I D Sbjct: 59 PGVTITGNVSLRGQNIYAPNEDVVQ-LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKD 117 Query: 432 QNSLHIAQKTAKIVGC---------HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA 482 + L A +T+ HE LSL G Q Q++ ++R++A Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ-------------QRVCIARVLA 164 Query: 483 NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPI 541 P ++L+DEP LD + +L + ++ + TI++++H S +SD + F + Sbjct: 165 VKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFF--L 221 Query: 542 QGSL--FGLTQDIF 553 G+L F T+ +F Sbjct: 222 TGNLIEFADTKQMF 235 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 66.6 bits (163), Expect = 2e-11 Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 25/294 (8%) Query: 250 ILGIGAWLVIHQKLSAG---AIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLN 306 +L +GA VI K+SAG + +++ A ++ L ++ + + L Sbjct: 259 VLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL------- 311 Query: 307 DFTTLLNSSDSKKEPISMRLSNNTITAK----NIVFR-DKKTSRLICQNLSFTIPEGSCC 361 LL + K P + + + + F + + L+ T+ G Sbjct: 312 --IELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETV 369 Query: 362 IIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDFIEKFSAQIGYLSQHCSLF 418 + GPSG GKS +L + G I RQ+ + A++ + Q LF Sbjct: 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA---ELRARMALVPQDPVLF 426 Query: 419 PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS 478 S+ ENI + + A+ HE I +L GY T + + Q+ R++ Sbjct: 427 AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 Query: 479 --RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530 R I + ILL+DE LD E++ L+ + + T++I T++ Sbjct: 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK 540 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 66.6 bits (163), Expect = 2e-11 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 53/235 (22%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLL--TLEKGTISFGDRQISR---DFI 401 ++S IP+ GPSGCGKS L C M L+ +G I + I D Sbjct: 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 Query: 402 EKFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVGC------- 447 E ++G + Q + FP SI EN++ +++ L +++ + Sbjct: 103 E-LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR 161 Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 HE+ L G Q Q++ ++R IA P +LL+DEP LD + Sbjct: 162 LHENAFGLSGGQQ-------------QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE 208 Query: 507 TLLKQFKENKKTIVIISHDPTIISM------SDFSLIFHPIQGSL--FGLTQDIF 553 L+ + K K TIVI++H +M SD++ + G L +G T +F Sbjct: 209 ELITELKS-KYTIVIVTH-----NMQQAARVSDYTAFMY--MGKLVEYGDTDTLF 255 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 66.3 bits (162), Expect = 2e-11 Identities = 62/311 (19%), Positives = 119/311 (38%), Gaps = 22/311 (7%) Query: 232 YYFGISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKS 291 Y + T L M +Q +L G LV+ K+S+G +++ + + + + Sbjct: 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSG 443 Query: 292 LNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRD------KKTSR 345 + + + + + D + + + P+++ I F+D + Sbjct: 444 MMQAVGASEKVFEYLDRKPNIPLTGTLA-PLNLE--------GLIEFQDVSFSYPNRPDV 494 Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF- 404 + + L+FT+ G + GPSG GKS + L G + D + + Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL-DGVPLVQYDHHYL 553 Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 Q+ + Q LF S+ ENI AK H+ I+ NGY T Sbjct: 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 Query: 465 DEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522 + QK R+ +R + P +L++DE LD E + + +T+++I Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRSRAS--RTVLLI 670 Query: 523 SHDPTIISMSD 533 +H + + +D Sbjct: 671 AHRLSTVERAD 681 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 66.4 bits (162), Expect = 2e-11 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 37/229 (16%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQI--SRDFI 401 +++ +IP+ + GPSGCGKS L C M L+ + G I + I S + Sbjct: 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 Query: 402 EKFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVG-------- 446 +IG + Q + FP SI EN+ ++ +L I +K+ K Sbjct: 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR 142 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 H+ LSL G Q Q++ ++R +A NP ++LMDEP LD A Sbjct: 143 LHDSALSLSGGQQ-------------QRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189 Query: 507 TLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDIFK 554 L++ K+ + T++I++H+ + +SD++ + + F T IF+ Sbjct: 190 DLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 65.9 bits (161), Expect = 3e-11 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 25/192 (13%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406 + ++S IP G + GPSG GK+ L + GL G I F +SR + Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--LHARDR 74 Query: 407 QIGYLSQHCSLFP-ISITENI-----ILSHDQ--NSLHIAQKTAKIVGCHEDILSLKNGY 458 ++G++ QH +LF +++ +NI +L + N+ I K + +L + Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQ-------LLEM---V 124 Query: 459 QTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 Q + +D P + Q++ L+R +A P ILL+DEP LD + + L+Q E Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 Query: 515 NKK-TIVIISHD 525 K T V ++HD Sbjct: 185 ELKFTSVFVTHD 196 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 66.0 bits (161), Expect = 3e-11 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 40/235 (17%) Query: 330 TITAKNIVFRDKKTS-----RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL 384 T+ V R + + L +N+ IP+ GPSGCGKS L C L L Sbjct: 3 TLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL 62 Query: 385 -----EKGTISFGDRQISRDFIE--KFSAQIGYLSQHCSLFPISITENI-----ILSHDQ 432 +G ++F + + ++ + +IG + Q + FP SI +NI I + Sbjct: 63 IPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKG 122 Query: 433 NSLHIAQKTAKIVGCHEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANN 484 + + +++ + +++ LSL G Q Q++ ++R IA Sbjct: 123 DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ-------------QRLCIARAIAVQ 169 Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIF 538 P ++LMDEP LD + L+ + KE + TI+I++H+ + +SD + F Sbjct: 170 PEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFF 223 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 65.7 bits (161), Expect = 3e-11 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 37/206 (17%) Query: 343 TSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR---D 399 ++S I +G + GPSG GK+ L + G LT +G + ++R Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72 Query: 400 FIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIA-----------QKTAKIVGC 447 + +IG + Q L P ++ EN+ L L + + VG Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALP-----LEVRGKKEREIQRRVGAALRQVGL 127 Query: 448 HEDI----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 L G Q Q++ ++R I N+P +LL DEP +LD + Sbjct: 128 EHKADAFPEQLSGGEQ-------------QRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174 Query: 504 NFYTLLKQFKENKKTIVIISHDPTII 529 LLK+ + T+++ +HD +++ Sbjct: 175 RILDLLKRLNKRGTTVIVATHDLSLV 200 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 65.6 bits (160), Expect = 3e-11 Identities = 57/268 (21%), Positives = 118/268 (44%), Gaps = 49/268 (18%) Query: 303 INLNDFTTLLNSSDSKKEPISMRLSNNTIT------AKNIVFRDKKTSRLICQNLSFTIP 356 ++ +D L+ + + +M+ + + + +N+ RD+K R ++SF++ Sbjct: 232 VSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVR----DISFSVC 287 Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQIGYLSQH- 414 G AG G G++ + C+ G+ G I + IS R ++ + Y+++ Sbjct: 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347 Query: 415 --CSLFP-ISITENIILS---------------HDQNSLHIAQKTAKIVG--CH---EDI 451 FP SI +N+ +S H+ + A+ +++ CH ++I Sbjct: 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 L G Q QK+ +S+ + P +++ DEP +D AK Y +++Q Sbjct: 408 TELSGGNQ-------------QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 Query: 512 FKENKKTIVIISHD-PTIISMSDFSLIF 538 ++ K I+++S + P II++ D +F Sbjct: 455 LADDGKVILMVSSELPEIITVCDRIAVF 482 Score = 49.8 bits (119), Expect = 2e-06 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 26/192 (13%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407 ++++ T+ G + G +G GKS + + G+ KGTI+ + ++ K +AQ Sbjct: 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK-LDHKLAAQL 80 Query: 408 -IGYLSQHCSLF-PISITENIILSH------------DQNSLHI-AQKTAKIVGCHEDIL 452 IG + Q S+ +++ EN+ + D + + A VG D L Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-L 139 Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512 K + + Q + +++ + + +++MDEP L N+ + + ++ Q Sbjct: 140 DEKVA--------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191 Query: 513 KENKKTIVIISH 524 ++ IV ISH Sbjct: 192 RKEGTAIVYISH 203 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 65.5 bits (160), Expect = 3e-11 Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 41/230 (17%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQI-SRDF-I 401 + ++ I E + GPSGCGKS FL M L+ K G + + I D + Sbjct: 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 Query: 402 EKFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVGCHEDI--- 451 + ++G + Q + FP+SI +N+ D+ L I +K+ K +++ Sbjct: 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR 139 Query: 452 -----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 L L G Q Q++ ++R +A P +LLMDEP LD + Sbjct: 140 LKKSALGLSGGQQ-------------QRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186 Query: 507 TLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553 L+++ K TIVI++H+ S +SD + F + G + FG T D+F Sbjct: 187 ELIQELK-KDYTIVIVTHNMQQASRISDKTAFF--LNGEIVEFGDTVDLF 233 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 65.5 bits (160), Expect = 4e-11 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 11/181 (6%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSAQI 408 L+F G + G +G GKS LL + GLL + G + + SR + + ++ Sbjct: 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRV 70 Query: 409 GYLSQHC--SLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL--KNGYQTTYCS 464 G + Q LF + +++ L A+ ++ + L+ +G + Sbjct: 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRV----REALTAVGASGLRERPTH 126 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 + +++ ++ +A P +LL+DEP LD + +L++ + T+VI +H Sbjct: 127 -CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185 Query: 525 D 525 D Sbjct: 186 D 186 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 65.2 bits (159), Expect = 4e-11 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 20/199 (10%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDF 400 RLI + T P GS + GP+G GKS L + G L + GT+ +SR Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-- 70 Query: 401 IEKFSAQIGYLSQHCSL-FPISITENIILSH-------DQNSLHIAQKTAKIVGCHEDIL 452 + ++ + Q P+++ + + L +S H A + + E + Sbjct: 71 -RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE-LS 128 Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512 L + +T E Q++ ++R +A P +LL+DEP HLD A+ L+++ Sbjct: 129 HLADRDMSTLSGGE-----RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 Query: 513 KENKKTIVIISHDPTIISM 531 T+V HD + + Sbjct: 184 AATGVTVVAALHDLNLAAS 202 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 64.8 bits (158), Expect = 6e-11 Identities = 47/181 (25%), Positives = 92/181 (50%), Gaps = 12/181 (6%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 + ++ TI +G + G SGCGKS L + GL G + +QI+ ++ Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57 Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK--IVGCHEDILSLKNGYQTTYCSD 465 + Q+ SL P +++ ENI L+ D+ L K+ + IV H ++ L Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVDR-VLPDLSKSERRAIVEEHIALVGLTEAADKR--PG 113 Query: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TLLKQFKENKKTIVIISH 524 ++ + Q++ ++R ++ P +LL+DEP LD + N L++ ++E++ T+++++H Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173 Query: 525 D 525 D Sbjct: 174 D 174 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 64.2 bits (156), Expect = 8e-11 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 25/221 (11%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDFIE-- 402 +++ I E + GPSGCGKS FL C M L++ K G + + I ++ Sbjct: 22 DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 + ++G + Q + FP+SI +N+ + + ++ KIV +LK Sbjct: 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVE-----WALKKAALWDE 136 Query: 463 CSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 D++ + + Q++ ++R IA P ++LMDEP LD + L+ + K Sbjct: 137 VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-K 195 Query: 516 KKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553 + TIVI++H+ S +SD++ F + G L F T+ IF Sbjct: 196 EYTIVIVTHNMQQASRVSDYTAFF--LMGDLIEFNKTEKIF 234 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 64.1 bits (156), Expect = 9e-11 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 8/193 (4%) Query: 336 IVFRDKKTS---RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG 392 I FR+ + +L+ LSF + G C + GP+G GK+ L +LGL + G+IS Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67 Query: 393 DRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451 + ++G + Q +L P ++ EN+++ L A A + E Sbjct: 68 GEPVPSR-ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE-F 125 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 L+N E+ + +++ L+R + N+P +L++DEP LD +A++ + L+ Sbjct: 126 AKLENKADAKV--GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183 Query: 512 FKENKKTIVIISH 524 KTI++ +H Sbjct: 184 LLARGKTILLTTH 196 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 63.8 bits (155), Expect = 1e-10 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 45/244 (18%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL-----EKGTI 389 N F D I +N++ IP+ S + GPSGCGKS F+ + + L +G I Sbjct: 10 NTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI 65 Query: 390 SFGDRQISRDFIE--KFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQK 440 I ++ + ++G + Q + FP SI +N+ D++ + ++ Sbjct: 66 YLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEE 125 Query: 441 TAKIVGCHEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDE 492 + K +++ L L G Q Q++ ++R IA +P ++LMDE Sbjct: 126 SLKAAALWDEVKDKLDKSALGLSGGQQ-------------QRLCIARTIAVSPEVILMDE 172 Query: 493 PLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLF--GLT 549 P LD + L+ + K TIVI++H+ +S ++ F + G + GLT Sbjct: 173 PCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFF--LNGEIIESGLT 229 Query: 550 QDIF 553 IF Sbjct: 230 DQIF 233 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 63.5 bits (154), Expect = 1e-10 Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 35/206 (16%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDFIE--KFSAQ 407 IP GPSGCGKS L C M L+ K G + + DR I I K Q Sbjct: 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102 Query: 408 IGYLSQHCSLFPISITENIILSHDQNS--------LHIAQKTAKIVGCHEDIL-----SL 454 +G + Q + FP SI ENI + N + + + A I +D L +L Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTAL 162 Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 G Q C ++R IA P +LLMDEP LD + L + KE Sbjct: 163 SGGQQQRLC-------------IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209 Query: 515 NKKTIVIISHDPTIIS-MSDFSLIFH 539 + TI++++H+ S ++D++ F+ Sbjct: 210 -QYTIIMVTHNMQQASRVADWTAFFN 234 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 63.4 bits (154), Expect = 1e-10 Identities = 43/182 (23%), Positives = 92/182 (50%), Gaps = 7/182 (3%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI-SRDFIEK 403 +++ +LSFTI G C + GP+G GKS +LG+++ ++G I+ + SR + + Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 IG + Q +L P ++ EN+++ + ++ ++ + L++ Sbjct: 77 --VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS-TREIEAVIPSLLEFARLESKADVRV 133 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522 + + +++ L+R + N+P +L++DEP LD A++ + L+ KTI++ Sbjct: 134 A--LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191 Query: 523 SH 524 +H Sbjct: 192 TH 193 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 63.5 bits (154), Expect = 1e-10 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 12/216 (5%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTISFGDRQISRDFIEK 403 +++S PE S I GPSGCGKS L + + L G I D I ++ Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 Query: 404 FSAQ--IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 S + +G + Q + FP +SI +N+I + N + +IV ++L + + Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140 Query: 461 TYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 S+ + + Q+ RL +R IA P ++LMDEP LD + L+++ KE K T Sbjct: 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYT 199 Query: 519 IVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIF 553 I+I++H+ +SD++ F+ G T+ IF Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 63.3 bits (154), Expect = 2e-10 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 38/199 (19%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLL--TLEKGTISFGDRQISR---DFI 401 ++S + + GPSGCGKS FL C M L+ +G I I D + Sbjct: 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 Query: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSL----HIAQKTAKIVG----------- 446 E ++G + Q + FP SI EN+ N + ++A++ + + Sbjct: 84 E-LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR 142 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 HE L L G Q Q++ ++R +A P +LLMDEP LD A Sbjct: 143 LHESALGLSGGQQ-------------QRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189 Query: 507 TLLKQFKENKKTIVIISHD 525 L+ + K TI+I++H+ Sbjct: 190 ELIHELKAR-YTIIIVTHN 207 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 62.8 bits (153), Expect = 2e-10 Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 28/306 (9%) Query: 248 SSILGIGAWLVIHQKLSAGAIIATSIITARA--MAPLEQIINSKKSLNVGLKSLKYLINL 305 + +L I + L+AG T+ ITA + PL+ + N + GL + + L L Sbjct: 253 AVVLFIALFQAQAGSLTAGDF--TAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTL 310 Query: 306 NDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAG 365 D ++ E + +N+ FR R ++S I G + G Sbjct: 311 LDSPPEKDTGTRAIERARGDVE-----FRNVTFRYPGRDRPALDSISLVIEPGETVALVG 365 Query: 366 PSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITEN 425 SG GKS + + + G I ++ + Q+ +SQ LF +I N Sbjct: 366 RSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 Query: 426 IILSH-DQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV-------QKIRL 477 I +Q ++ + + L G T I N V Q++ + Sbjct: 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT-----PIGENGVLLSGGQRQRLAI 480 Query: 478 SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI------ISHDPTIISM 531 +R + + IL++DE LDNE++ L++ + + T+VI I I+ M Sbjct: 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540 Query: 532 SDFSLI 537 D ++ Sbjct: 541 DDGRIV 546 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 62.6 bits (152), Expect = 3e-10 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 35/197 (17%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDF-IE 402 ++++ IP + GPSGCGKS L C M L+ K G ++ I + + Sbjct: 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 Query: 403 KFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVGCHEDI---- 451 ++G + Q + FP+SI EN+ D+ L + +++ + +++ Sbjct: 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL 139 Query: 452 ----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 L G Q Q++ ++R IA P ++LMDEP LD A + Sbjct: 140 KSHAFGLSGGQQ-------------QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186 Query: 508 LLKQFKENKKTIVIISH 524 L+++ K+N TIVI++H Sbjct: 187 LMEELKKN-YTIVIVTH 202 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 62.4 bits (152), Expect = 3e-10 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 26/211 (12%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR-------QIS-R 398 + +N+S T+ G C ++GPSG GKS L + + G I Q S R Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82 Query: 399 DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN- 456 + +E IGY+SQ + P +S E + + + A+ ++L+ N Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARA----RELLARLNI 138 Query: 457 ------GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 T+ E Q++ ++R + ILL+DEP LD + L+ Sbjct: 139 PERLWHLPPATFSGGE-----QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193 Query: 511 QFKENKKTIVIISHDPTII-SMSDFSLIFHP 540 + K ++ I HD + ++D + P Sbjct: 194 EAKARGAALIGIFHDEEVRELVADRVMDVTP 224 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 62.3 bits (151), Expect = 3e-10 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 38/219 (17%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 I A+++ F L + +S I E S GPSGCGKS FL + L T Sbjct: 2 VKIDARDVNFWYGDFHAL--KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59 Query: 389 ISFGDRQIS-RDF------IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSL------ 435 G+ +I R+ +++ +G + Q + FP SI EN+ N + Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119 Query: 436 -HIAQKTAKIVGCHEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPA 486 ++T K +++ +L G Q C ++R +A +P+ Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC-------------IARAMAVSPS 166 Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 +LLMDEP LD + L+ + K TIVI++H+ Sbjct: 167 VLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHN 204 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 61.8 bits (151), Expect = 4e-10 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 21/189 (11%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 R++ LSFT+ G ++ GP+G GK+ L + GLL GTI I Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---DPDV 71 Query: 405 SAQIGYLSQHCSLFP-ISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 + YL ++ P +++ EN+ L IA + VG + L GY + Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAA-ALEAVGLA-PLAHLPFGYLS 129 Query: 461 TYCSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 QK R L+R++ +N I ++DEP LD A F L++ Sbjct: 130 AG----------QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179 Query: 519 IVIISHDPT 527 ++ +H P Sbjct: 180 VIAATHIPL 188 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 61.8 bits (150), Expect = 4e-10 Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 11/211 (5%) Query: 317 SKKEPISMRLSNNTITAKNIV--FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 K I +S I + + DK + LSFT+ G C + GP+G GKS Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK----AVVNGLSFTVASGECFGLLGPNGAGKSTI 83 Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQN 433 +LG+ + + G I+ + A+IG + Q +L ++ EN+++ Sbjct: 84 ARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 Query: 434 SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493 + ++ ++ + L++ ++ + +++ L+R + N+P +L++DEP Sbjct: 143 GMS-TREIEAVIPSLLEFARLESKADARVS--DLSGGMKRRLTLARALINDPQLLILDEP 199 Query: 494 LYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 LD A++ + L+ KTI++ +H Sbjct: 200 TTGLDPHARHLIWERLRSLLARGKTILLTTH 230 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 61.0 bits (148), Expect = 7e-10 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 24/197 (12%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--------R 398 + + + IP+ + GPSGCGKS L LL L + G+ ++ Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 Query: 399 DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQK--------TAKIVGCHE 449 D IE ++G + Q+ + FP ++I +N+ + N L ++K K + Sbjct: 79 DPIE-VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD 137 Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509 ++ N Y + + Q++ ++R +A P ILLMDEP ++D LL Sbjct: 138 EVKDRLNDYPSNLSGGQ-----RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192 Query: 510 KQFKENKKTIVIISHDP 526 + K + TIV+++H P Sbjct: 193 FELK-KEYTIVLVTHSP 208 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 60.8 bits (148), Expect = 9e-10 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 28/229 (12%) Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 ++ + I +N+ F + +N+SF I EG I G +G GKS + GLL Sbjct: 1 IKNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK 60 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT---------ENIILSHDQNS 434 + G I IS++ +++ +IG + Q+ I T EN + + Sbjct: 61 PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK 120 Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLM 490 I AK VG ED L D+ P N+ Q++ ++ ++A NP I++ Sbjct: 121 -DIIDDLAKKVGM-EDYL------------DKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 Query: 491 DEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSDFSLIF 538 DE LD + K ++ K KKT++ I+HD ++D ++F Sbjct: 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF 215 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 60.4 bits (146), Expect = 1e-09 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 18/195 (9%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS-------FGDRQIS 397 + I ++++ IP S I GPSG GKS L + L+ + I FG Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 Query: 398 RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN 456 D I K ++G + Q + FP +SI +NI + + ++ KIV E+ L Sbjct: 83 IDAI-KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIV---EECLRKVG 138 Query: 457 GYQTTYCSDEIPYNIV-----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 ++ Y P + + Q++ ++R +A P +LLMDEP +D L+ + Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 Query: 512 FKENKKTIVIISHDP 526 K N+ IVI+SH+P Sbjct: 199 LK-NEIAIVIVSHNP 212 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 59.5 bits (144), Expect = 2e-09 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 20/188 (10%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI----SRDFIEKFS 405 N+SF + EGS + G +G GKS + LL GTI+ I ++K Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84 Query: 406 AQIGYLSQ--HCSLFPISITENIILS------HDQNSLHIAQKTAKIVGCHEDILSLKNG 457 ++ + Q LF ++ +++ + + A K K VG ED++S K+ Sbjct: 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSP 143 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517 + E+ ++++ ++ ++A P IL +DEP LD E + L K +++ Sbjct: 144 F-------ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH 196 Query: 518 TIVIISHD 525 T+++++H+ Sbjct: 197 TVILVTHN 204 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 59.6 bits (144), Expect = 2e-09 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 31/230 (13%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL------LTLEKGTISFGDRQISR 398 + +N++ I + I GPSGCGK+ L + + +E G I F + I Sbjct: 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE-GKIYFKGQDIYD 74 Query: 399 DFIE--KFSAQIGYLSQHCSLFPISITENIILS---HDQNSLH----IAQKTAKIVGCHE 449 ++ ++ ++G + Q + FP+SI +N+ H S H I +++ K + Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134 Query: 450 DILSL--KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 ++ S K G + Q++ ++R +A P ++L+DEP LD A Sbjct: 135 EVKSELNKPGT-------RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187 Query: 508 LLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIFK 554 LL++ EN TIVI++H+ I ++D+ I +G L +G T++I + Sbjct: 188 LLEELSEN-YTIVIVTHNIGQAIRIADY--IAFMYRGELIEYGPTREIVE 234 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 59.5 bits (144), Expect = 2e-09 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 36/199 (18%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQI--SRDFI 401 +N++ I E I GPSGCGKS ++ M+ L+ K G I + D+ I + Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 Query: 402 EKFSAQIGYLSQHCSLFPISITENII-------LSHDQNSLHIAQKTAKIVGC------- 447 E+ +G + Q + FP SI +N+ + + I +K+ + Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDR 160 Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 H++ L G Q Q++ ++R +A P ++LMDEP LD + Sbjct: 161 LHDNAYGLSGGQQ-------------QRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207 Query: 507 TLLKQFKENKKTIVIISHD 525 L+++ K+ +I+I++H+ Sbjct: 208 ELVQELKK-DYSIIIVTHN 225 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 59.1 bits (143), Expect = 3e-09 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 15/182 (8%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 ++S TI +G + G SGCGKS L + G G I +S + + I Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPIN 94 Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468 + Q +LFP +++ +NI Q+ L A+ +++ ++L L + + + P Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRV----NEMLGLVHMQEF---AKRKP 147 Query: 469 YNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523 + + Q++ L+R +A P +LL+DEP+ LD + ++ + E T V+++ Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207 Query: 524 HD 525 HD Sbjct: 208 HD 209 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 59.3 bits (143), Expect = 3e-09 Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 9/192 (4%) Query: 340 DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR- 398 +K L ++ S I EG +I G SG GKS + + L+ +G + I++ Sbjct: 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI 95 Query: 399 ---DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL 454 + E +I + Q +L P +++ +N + ++ ++ K + + L Sbjct: 96 SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-GL 154 Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TLLKQFK 513 +N Y +Y DE+ + Q++ L+R +A NP ILLMDE LD + L+K Sbjct: 155 EN-YAHSY-PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212 Query: 514 ENKKTIVIISHD 525 ++++TIV ISHD Sbjct: 213 KHQRTIVFISHD 224 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 59.1 bits (143), Expect = 3e-09 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 21/192 (10%) Query: 363 IAGPSGCGKSNFLLCMLGLLTL-----EKGTISFGDRQISRDFIEK--FSAQIGYLSQHC 415 I GPSGCGKS FL + + L G + F I F ++ +IG + Q Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 Query: 416 SLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--- 472 + FP SI +NI + ++ ++ +IV SL+ SD + N + Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALGLS 184 Query: 473 ----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTI 528 Q++ ++R +A P ILL+DEP LD +A L+++ + TI+I++H+ Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQQ 243 Query: 529 IS-MSDFSLIFH 539 S +SD+++ F+ Sbjct: 244 ASRVSDYTMFFY 255 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 58.8 bits (142), Expect = 4e-09 Identities = 61/284 (21%), Positives = 116/284 (40%), Gaps = 33/284 (11%) Query: 282 LEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDK 341 L +I+S +V LK L+ ++ + L ++ I N+IT N F Sbjct: 593 LPMVISSIVQASVSLKRLRIFLSHEE----LEPDSIERRTIKPG-EGNSITVHNATFTWA 647 Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFI 401 + ++F+IPEG+ + G GCGKS+ L +L + +G + Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH----------- 696 Query: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461 + Y+ Q + S+ ENI+ N + Q+ + D+ L +G +T Sbjct: 697 --MKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY-QQVLEACALLPDLEILPSGDRTE 753 Query: 462 YCSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYT-------LLKQF 512 + + QK R L+R + +N I L D+PL +D + + +LK Sbjct: 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN- 812 Query: 513 KENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIFKFN 556 KT ++++H + + D ++ + S G Q++ + + Sbjct: 813 ----KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD 852 Score = 34.5 bits (79), Expect = 0.071 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 10/196 (5%) Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393 +N R ++ L+ ++++ TI G I G +G GKS+ L + + +G I Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 Query: 394 RQISRDFIEKFSAQIGYLSQHCSLFPISITENI--ILSHDQNSLHIAQKTAKIVGCHEDI 451 I++ + +I + Q LF S+ N+ + + A + A + + Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHL---KTFV 1404 Query: 452 LSLKNG--YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TL 508 +L + ++ + + Q + L+R + IL++DE +D E N T+ Sbjct: 1405 SALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 Query: 509 LKQFKENKKTIVIISH 524 QF++ T++ I+H Sbjct: 1465 RTQFEDC--TVLTIAH 1478 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 58.7 bits (142), Expect = 4e-09 Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 N I K + + + I +++S G+ I GPSG GKS + + L+ +G+ Sbjct: 2 NEIEFKEVSYSS--FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59 Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI----ILSHDQNSLHIAQKTAKI 444 I I + +IG + Q LF ++ +NI +L ++N + I Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV--DVEYYLSI 117 Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 VG L Y T + Q++ ++R +ANNP +LL+DEP LD + Sbjct: 118 VG-------LNKEYATRDV-KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169 Query: 505 FYTLLKQFKENKK-TIVIISHD 525 L+ + K T++ I+H+ Sbjct: 170 IEELIVKLKNKMNLTVIWITHN 191 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 58.6 bits (142), Expect = 5e-09 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 51/234 (21%) Query: 331 ITAKNIVFR-DKKTSRLI--CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 I KNIV +KK + N+S I +G I G +G GK+ F+ + LL + G Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62 Query: 388 TISFGDRQISRD------------------------FIEKFSAQIGYLSQHC--SLFPIS 421 TI + + I++ ++G + Q LF + Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122 Query: 422 ITENIILS------HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--Q 473 I ++II + + A K ++VG E L P+ + Q Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL------------QRSPFELSGGQ 170 Query: 474 KIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 K R L+ I+A P L+ DEP LD + + + KTI++++HD Sbjct: 171 KRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 58.0 bits (141), Expect = 7e-09 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 40/235 (17%) Query: 317 SKKEPISMRLSNNTITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 SKK + + + I F K+ + NL TI G + GPSGCGK+ Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTV 56 Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQN 433 L + G T + G I + I+ E + + Q +LFP +++ EN+ Sbjct: 57 LRLIAGFETPDSGRIMLDGQDITHVPAEN--RHVNTVFQSYALFPHMTVFENVAF----- 109 Query: 434 SLHIAQKT--AKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAI 487 L + QKT A+I + L + Q + P+ + Q++ ++R + N P + Sbjct: 110 GLRM-QKTPAAEITPRVMEALRM---VQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165 Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKK--------TIVIISHD-PTIISMSD 533 LL+DE L LD Y L KQ + K T V ++HD ++MSD Sbjct: 166 LLLDESLSALD-------YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD 213 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 57.7 bits (139), Expect = 7e-09 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 23/222 (10%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407 +N++ + E + GPSGCGKS FL C + L G G+ + D + S + Sbjct: 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 Query: 408 --------IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459 I + Q + FP SI EN+ L I + + +L+N Sbjct: 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYG-----LRIRGVKRRSILEERVENALRNAAL 147 Query: 460 TTYCSD---EIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512 D ++ +N+ Q++ ++R +A +P ILL DEP LD A + L+ Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL 207 Query: 513 KENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIF 553 K NK TI+I++H+ +SD++ + + FG T IF Sbjct: 208 K-NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 57.8 bits (139), Expect = 8e-09 Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 54/240 (22%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----------GTISFGD 393 + + +S P + + GP+G GK+ FL TL + G + G Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLR------TLNRMNDKVSGYRYSGDVLLGG 87 Query: 394 RQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSL-------HIAQKTAKI 444 R I RD +E F ++G L Q + FP+SI +N++ + L +AQ Sbjct: 88 RSIFNYRDVLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE 146 Query: 445 VGCHE---DILS-----LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496 VG + D LS L G Q C L+R +A NP +LL+DEP Sbjct: 147 VGLWDAVKDRLSDSPFRLSGGQQQLLC-------------LARTLAVNPEVLLLDEPTSA 193 Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLF--GLTQDIF 553 LD ++ + + T++I++H+ +SD + +F G L G T+ +F Sbjct: 194 LDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALF--FDGRLVEEGPTEQLF 250 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 57.5 bits (140), Expect = 8e-09 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 48/219 (21%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE---- 385 ++T N+ F + + + LS I G + G +GCGKS +L LLT Sbjct: 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST----LLQLLTRAWDPQ 393 Query: 386 KGTISFGDRQISRDFIEK-FSAQIGYLSQHCSLFPISITENIIL----SHDQNSLHIAQK 440 +G I + I+ D+ E I +SQ LF ++ +N++L + D+ + + Q+ Sbjct: 394 QGEILLNGQPIA-DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQ 452 Query: 441 TAKIVGCHEDILS---------------LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNP 485 VG E +L L G Q +++ ++R + ++ Sbjct: 453 ----VGL-EKLLEDDKGLNAWLGEGGRQLSGGEQ-------------RRLGIARALLHDA 494 Query: 486 AILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 +LL+DEP LD E + LL + +N KT+++I+H Sbjct: 495 PLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITH 532 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 57.5 bits (140), Expect = 8e-09 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 43/219 (19%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 + A+N+ R R + ++S T+ G I GP+G GKS L + G L+ + G + Sbjct: 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59 Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSL-FPISITENIIL------SHDQNSLHIAQKTA 442 R ++ + + + L QH SL FP ++ E + + + Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119 Query: 443 KIVGC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA------NNPAILLMDE 492 V D L G Q Q+++L+R++A P LL+DE Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQ-------------QRVQLARVLAQLWEPDGPPRWLLLDE 166 Query: 493 P-----LYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525 P L H +++ L +Q E ++++ HD Sbjct: 167 PTSALDLAH-----QHHVLRLARQLAHERGLAVIVVLHD 200 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 57.5 bits (139), Expect = 1e-08 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 37/223 (16%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRD-FIEKFS 405 +++ +G I G +G GKS + + LL GT++ D I ++D +I Sbjct: 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR 84 Query: 406 AQIGYLSQ--HCSLFPISITENIILSHDQNSLHIAQKTAKI------VGCHEDILSLKNG 457 +IG + Q LF ++ II +++ + +G D++S Sbjct: 85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS-- 142 Query: 458 YQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 P+ + ++KI + I+A NP I+++DEP LD ++K LLK + Sbjct: 143 ----------PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192 Query: 514 -ENKKTIVIISHD--------PTIISMSDFSLIFHPIQGSLFG 547 + KTI+++SHD +I M + S++ LF Sbjct: 193 TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 56.9 bits (138), Expect = 1e-08 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 28/212 (13%) Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 I ++I FR + +++SF++ EG I G +G GKS + GLL E G Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT---------ENIILSHDQNSLHIA 438 TI+ G +S + + Q+G + Q+ + T ENI + ++ + Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV- 121 Query: 439 QKTAKIVG----CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494 + + VG + + L G + Q++ ++ ++A P I+++DE Sbjct: 122 DQALRQVGMEDFLNREPHRLSGGQK-------------QRVAIAGVLALQPDIIILDEAT 168 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVI-ISHD 525 LD + ++Q KE K V+ I+HD Sbjct: 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 57.0 bits (137), Expect = 1e-08 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 27/243 (11%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 N +N F ++ + +L+ I GPSGCGKS FL + L L +GT Sbjct: 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT 138 Query: 389 ISFGD----------RQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIA 438 G+ ++IS + +IG + Q + F +SI +N+ N ++ Sbjct: 139 SHEGEIYFLGTNTRSKKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR 195 Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPY--NIV-----QKIRLSRIIANNPAILLMD 491 + KIV SLK+ D++ N + Q++ ++R IA P +LLMD Sbjct: 196 KILEKIVE-----KSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250 Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQ 550 EP LD A L+ + K+ K +I+I++H +SD ++ F+ G T+ Sbjct: 251 EPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 Query: 551 DIF 553 IF Sbjct: 310 TIF 312 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 56.9 bits (137), Expect = 1e-08 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 29/198 (14%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403 + +NL+ IP+G I GP+GCGKS L + L+T G + I ++ Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 Query: 404 FSAQIGYLSQHCSLFPISITENIILS---------------HDQNSLHIAQKTAKIVGCH 448 + +IG L+Q+ + P IT +++ D+ ++ A + I Sbjct: 79 VARRIGLLAQNATT-PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA 137 Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 + + +G Q Q+ ++ ++A AI+L+DEP LD + + L Sbjct: 138 DQSVDTLSGGQR------------QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 Query: 509 LKQF-KENKKTIVIISHD 525 L + +E T+ + HD Sbjct: 186 LSELNREKGYTLAAVLHD 203 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 56.6 bits (137), Expect = 2e-08 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 23/190 (12%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 R++ + LSFT+ G + GP+G GK+ L + GLL + G + + ++ E Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE-P 71 Query: 405 SAQIGYLSQHCSLFP-ISITENI-----ILSHDQNSLHIAQKTAKIVGCHEDIL--SLKN 456 I YL L P +S EN+ I Q ++ A + G ED+ L Sbjct: 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSA 130 Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 G Q +++ L+R+ + + ++DEP LD LL+ Sbjct: 131 GQQ-------------RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177 Query: 517 KTIVIISHDP 526 +++ +H Sbjct: 178 GIVLLTTHQD 187 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 56.4 bits (136), Expect = 2e-08 Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 35/211 (16%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR------ 398 R Q ++F + G + G SG GKS L + G+ G I F I+R Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREV 74 Query: 399 DFIEKFSAQIGYLSQ-HCSLFPISITENIIL-------SHDQNSLHIAQKTAKIVGCHED 450 F+ + QIG + Q H L ++ +N+ + S D ++ K VG + Sbjct: 75 PFLRR---QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK-VGLLDK 130 Query: 451 I----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 + L G Q Q++ ++R + N PA+LL DEP +LD+ Sbjct: 131 AKNFPIQLSGGEQ-------------QRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177 Query: 507 TLLKQFKENKKTIVIISHDPTIISMSDFSLI 537 L ++F T+++ +HD +IS + ++ Sbjct: 178 RLFEEFNRVGVTVLMATHDIGLISRRSYRML 208 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 56.6 bits (136), Expect = 2e-08 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 36/201 (17%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIE---- 402 + +N++ PE I GPSGCGKS L + + + G G + + I Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 Query: 403 ---KFSAQIGYLSQHCSLFPISITENIILSHD--------------QNSLHIAQKTAKIV 445 ++G + Q + FP SI +N+ + SL A ++ Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138 Query: 446 -GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 H+ L+L G Q C ++R++A P ++LMDEP LD + Sbjct: 139 DNLHKSGLALSGGQQQRLC-------------IARVLAIEPEVILMDEPCSALDPVSTMR 185 Query: 505 FYTLLKQFKENKKTIVIISHD 525 L+++ K+N TI I++H+ Sbjct: 186 IEELMQELKQN-YTIAIVTHN 205 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 56.2 bits (136), Expect = 2e-08 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFIEKFSA 406 N++ I G I GPSG GKS L C+ L+ G+I I + K Sbjct: 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 Query: 407 QIGYLSQHCSLFP-ISITENII---LSHDQN-----SLHIAQKTAKIVGCHEDILSLKNG 457 +IG + QH +L +++ EN++ L + + + + E + Sbjct: 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA 139 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENK 516 YQ +D++ Q++ ++R +A P ++L DEP+ LD + LK+ KE+ Sbjct: 140 YQR---ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196 Query: 517 KTIVIISHD 525 T++I H Sbjct: 197 ITVIINLHQ 205 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 56.3 bits (136), Expect = 2e-08 Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 28/191 (14%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF----IEKFS 405 +++ TI +GS G +G GKS + + GL +G++ D I+ I++ Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84 Query: 406 AQIGYLSQHCSLFPIS-ITENIILSH----DQN---SLHIAQKTAK----IVGCHEDILS 453 ++G + Q FP S + E +L QN S A+ A+ +VG E + Sbjct: 85 KKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140 Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 KN + E+ ++++ ++ I+A P IL++DEP LD + + TL K+ Sbjct: 141 -KNPF-------ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH 192 Query: 514 ENKKTIVIISH 524 ++ TIV+++H Sbjct: 193 QSGMTIVLVTH 203 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 56.1 bits (135), Expect = 3e-08 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406 + +N+SF + +G +AG +G GKS+ L+ ++G L +G I K S Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-------------KHSG 487 Query: 407 QIGYLSQHCSLFPISITENII--LSHDQNSLHIAQKTAKIVGCH--EDILSLKNGYQTTY 462 +I + Q + P +I +NII LS+D+ + T+ I C EDI +T Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDE-----YRYTSVIKACQLEEDIALFPEKDKTVL 542 Query: 463 CSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLD-NEAKNNFYTLLKQFKENKKTI 519 I + Q+ R L+R + + + L+D P HLD K F + L + NK I Sbjct: 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRI 602 Query: 520 VIIS 523 ++ S Sbjct: 603 LVTS 606 Score = 43.0 bits (101), Expect = 2e-04 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 30/187 (16%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 S + + + + + R + Q+LSF++ G + G +G GKS L +L LL+ E Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE- 1272 Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVG 446 G I + ++ + G + Q +F + +N+ ++Q S K A+ VG Sbjct: 1273 GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVG 1331 Query: 447 CHEDILS---------------LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMD 491 I L NG++ C L+R I + ILL+D Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC-------------LARSILSKAKILLLD 1378 Query: 492 EPLYHLD 498 EP HLD Sbjct: 1379 EPSAHLD 1385 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 56.0 bits (135), Expect = 3e-08 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 32/204 (15%) Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR---QIS 397 K + N+S +I EG + G SGCGKS +LGL +GT+SF + Q+ Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79 Query: 398 RDFIEKFSAQIGYLSQHC--SLFPISITENII---LSHDQNSLHIAQKTAKI------VG 446 R F + + Q ++ P II L H SL +++ A+I VG Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH-LTSLDESEQKARIAELLDMVG 138 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 + D++P + +Q+I ++R +A P ++++DE + +LD + Sbjct: 139 LRSEDA------------DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186 Query: 503 NNFYTLLKQFKENKKT-IVIISHD 525 LL++ ++ T + I+HD Sbjct: 187 AVILELLRKLQQAFGTAYLFITHD 210 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 55.9 bits (135), Expect = 3e-08 Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 22/223 (9%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 N + + + F + +R I N+S T+P G I GPSG GK+ L + G + + Sbjct: 4 VANLVDMRGVSFT--RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH 61 Query: 387 GTISFGDRQI---SRDFIEKFSAQIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQ 439 G I F I SR + ++ L Q +LF +++ +N+ + H Q + Sbjct: 62 GEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121 Query: 440 KTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499 T V + + L+ + E+ + ++ L+R IA P +++ DEP D Sbjct: 122 ST---VMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176 Query: 500 EAKNNFYTLLKQFKE-NKK---TIVIISHD-PTIISMSDFSLI 537 L+K E N T V++SHD P ++S++D + I Sbjct: 177 ITMG---VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI 216 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 55.6 bits (135), Expect = 3e-08 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 11/201 (5%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 TI A+++ L L+FT+P G + GPSG GK++ L +LG L + G+ Sbjct: 348 VTIEAEDLEILSPDGKTL-AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GS 405 Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSH---DQNSLHIAQKTAKIV 445 + ++ E + + ++ Q+ L ++ +N++L + L A + A + Sbjct: 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWV- 464 Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNI--VQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 E + L G T ++ Q++ L+R + +LL+DEP LD ++ Sbjct: 465 --SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522 Query: 504 NFYTLLKQFKENKKTIVIISH 524 L ++T ++++H Sbjct: 523 LVMQALNAAS-RRQTTLMVTH 542 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 55.4 bits (134), Expect = 4e-08 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 23/213 (10%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQI 408 N+S + G +AG G G++ + GL G I ++I+ ++ + + Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 Query: 409 GYLS---QHCSLF-PISITENII-LSHDQNSLHI-AQKTAKIVGCHEDILSLKNGYQTTY 462 YL Q L+ + N+ L+H++ I + ++ + L++K Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------- 393 Query: 463 CSD-EIPYNIV-----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 + E + QK+ +++ + +P +L++DEP +D A+N+ Y L++ Sbjct: 394 FNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN 453 Query: 517 KTIVIISHD-PTIISMSDFSLIFHPIQGSLFGL 548 ++ IS D I M+D L+ H QG + G Sbjct: 454 VAVLFISSDLEEIEQMADRVLVMH--QGEISGA 484 Score = 41.6 bits (98), Expect = 5e-04 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 17/180 (9%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG- 409 + FT+ G + G +G GKS + + G++ + GT+ G +R K + Q+G Sbjct: 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK-AHQLGI 88 Query: 410 YL-SQHCSLFP-ISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 YL Q LFP +S+ ENI+ + + Q A + GC L L + + + Sbjct: 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-GCQ---LDLDSSAGSLEVA 144 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 D Q + + R + + IL++DEP L ++ +++ IV ISH Sbjct: 145 DR------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 55.3 bits (133), Expect = 4e-08 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYL 411 + +G I GPSG GKS L + G + G+I D+ + + + + L Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSML 75 Query: 412 SQHCSLFP-ISITENIILS-HDQNSLHIAQK-----TAKIVGCHEDILSLKNGYQTTYCS 464 Q +LF +++ +NI L H L+ Q+ A+ VG + + L Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-------- 127 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIIS 523 ++ Q++ L+R + ILL+DEP LD + L+KQ E ++T+++++ Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186 Query: 524 HDPT 527 H + Sbjct: 187 HHLS 190 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 55.4 bits (133), Expect = 4e-08 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 32/224 (14%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEKGTISFGDRQISRDFIEKFSA 406 +++ I + + G SGCGKS FL C M + G + + + + Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 Query: 407 QIGYLSQHCSLFPISITENI--------ILSHDQNSLHIAQKTAKIVGCHEDI------- 451 +G + Q ++F SI ENI ++ + + + VG E++ Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139 Query: 452 -LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 L+L G Q C ++R +A P +LL+DEP LD + LLK Sbjct: 140 ALALSGGQQQRLC-------------IARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186 Query: 511 QFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIFK 554 + N I++ + ++D++ FH + FG +++ F+ Sbjct: 187 ELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 55.0 bits (133), Expect = 5e-08 Identities = 70/290 (24%), Positives = 125/290 (43%), Gaps = 33/290 (11%) Query: 259 IHQKLSAGAI--IATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSD 316 + L+AG I + +S+I M PL+ + N G+ + + L + D + Sbjct: 275 VMDTLTAGTITVVFSSMIAL--MRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376 E + I +N+ F +N++F IP G + G SG GKS Sbjct: 333 RVIER-----AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKST--- 384 Query: 377 CMLGLLT----LEKGTISFGDRQISRDF-IEKFSAQIGYLSQHCSLFPISITENIIL-SH 430 + LLT +++G I + RD+ + Q+ +SQ+ LF +I NI Sbjct: 385 -IANLLTRFYDIDEGEILLDGHDL-RDYTLASLRNQVALVSQNVHLFNDTIANNIAYART 442 Query: 431 DQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV-------QKIRLSRIIAN 483 +Q S ++ A++ + I + NG T I N V Q+I ++R + Sbjct: 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTV-----IGENGVLLSGGQRQRIAIARALLR 497 Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533 + IL++DE LD E++ L + ++N+ T ++I+H + I +D Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNR-TSLVIAHRLSTIEKAD 546 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 55.2 bits (133), Expect = 5e-08 Identities = 62/227 (27%), Positives = 90/227 (39%), Gaps = 67/227 (29%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLL-----------CMLGLLTLEKGTISFGDRQIS 397 +N+ IP G + GPSGCGKS L C L KG + F + Sbjct: 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL------KGRVLFDGTDLY 83 Query: 398 RDFIEKFSA--QIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI---- 451 ++ +IG + Q + FP SI ENI A+I G D+ Sbjct: 84 DPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG------------ARINGYTGDMDELV 131 Query: 452 -LSLKNGYQTTYCSD---EIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLD----- 498 SL+ C D E Y++ Q++ ++R IA P ++LMDEP LD Sbjct: 132 ERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 Query: 499 ------NEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIF 538 +E K NF TIVI++H+ + +SD + F Sbjct: 192 KIEETMHELKKNF------------TIVIVTHNMQQAVRVSDMTAFF 226 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 55.2 bits (133), Expect = 5e-08 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 43/215 (20%) Query: 365 GPSGCGKSNFLLCM--LGLLTLE---KGTISFGDRQI---SRDFIEKFSAQIGYLSQHCS 416 GPSG GKS L + + L E G+I + I D ++ +IG + Q + Sbjct: 38 GPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD-LRKEIGMVFQQPN 96 Query: 417 LFPISITENIILS------HDQNSLHIAQKTAKIVGC---------HEDILSLKNGYQTT 461 FP+SI EN++ D+ L A + + H+ L L G Q Sbjct: 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ-- 154 Query: 462 YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI 521 Q++ ++R++A +P I+L+DEP LD + L K + T+++ Sbjct: 155 -----------QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLL 202 Query: 522 ISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553 ++ S +SD + F + G L + T+ +F Sbjct: 203 VTRSMQQASRISDRTGFF--LDGDLIEYNDTKQMF 235 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 54.9 bits (132), Expect = 5e-08 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 31/176 (17%) Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSL---FPIS 421 GP+G GK+ L +LGL+ KGT+ + + IGY+ Q FPIS Sbjct: 13 GPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEFAWDFPIS 67 Query: 422 ITENIILSHDQNSLHIAQKTAKIVG-----CHEDILSLKNGYQT---TYCSD----EIPY 469 + + ++S +G C D ++++ + T +D E+ Sbjct: 68 V-AHTVMS----------GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116 Query: 470 NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 Q++ ++R +A P++LL+DEP LD + L + I++ +HD Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 55.0 bits (132), Expect = 5e-08 Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 55/249 (22%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTI 389 +I + +K+ ++S I + + + GPSGCGKS FL M L+ + G I Sbjct: 28 SIYYGEKRA----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83 Query: 390 SFGDRQISRDFIEKFS--AQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIV-- 445 + I I + +IG + Q + FP SI NI ++L A + K V Sbjct: 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNI-----THALKYAGERRKSVLD 138 Query: 446 ------------------GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAI 487 H LSL G Q Q++ ++R +A PA+ Sbjct: 139 EIVEESLTKAALWDEVKDRLHSSALSLSGGQQ-------------QRLCIARTLAMKPAV 185 Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL- 545 LL+DEP LD + L+ + KE +I+I++H+ + +SD + F + G L Sbjct: 186 LLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQALRVSDRTAFF--LNGDLV 242 Query: 546 -FGLTQDIF 553 + T+ IF Sbjct: 243 EYDQTEQIF 251 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 54.9 bits (133), Expect = 6e-08 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 29/191 (15%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 LS + G + GP+G GKS L M GLL G+I F + + + + Y Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 Query: 411 LSQHCS-LFPISITENIILS-HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468 LSQ + F + + + + L D+ V L L D++ Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEV-AE--ALGL---------DDKLG 121 Query: 469 YNIV-------QKIRLSRII-----ANNPA--ILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 ++ Q++RL+ ++ NPA +LL+DEP+ LD + LL + + Sbjct: 122 RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181 Query: 515 NKKTIVIISHD 525 +V+ SHD Sbjct: 182 QGIAVVMSSHD 192 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 54.5 bits (132), Expect = 6e-08 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 24/118 (20%) Query: 305 LNDFTTLLNSSDSKKE-------PISMRLSNNTITAKNIV--FRDKKTSRLICQNLSFTI 355 L + LL+ K+ P RL + I A+N+ F D +L+ +LSF + Sbjct: 290 LARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD----KLLIDDLSFKL 345 Query: 356 PEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ 413 P G + GP+G GKS + G + GTI G+ + ++ Y+ Q Sbjct: 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-----------TVKLAYVDQ 392 Score = 41.4 bits (98), Expect = 7e-04 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525 L R++ + P +LL+DEP HLD E+ L+Q +E T+V ++HD Sbjct: 172 LCRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVAVTHD 217 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 54.2 bits (131), Expect = 9e-08 Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 72/332 (21%) Query: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAII-----ATSIITARAMAPLEQIINSKKSLNVG 295 T+ M +IL +GA LV +L G ++ AT +I L+Q++ Sbjct: 251 TITML---AILVLGAALVQKGQLRVGEVVAFVGFATLLI-----GRLDQVVA-------- 294 Query: 296 LKSLKYLIN--------LNDFTTLLNSSDSKKEPISMRLSNN---TITAKNIVFR-DKKT 343 IN L +F + ++ ++P + ++ F D Sbjct: 295 ------FINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR 348 Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL----TLEKGTISFGDRQISRD 399 + +++SF G I GP+G GKS ++ LL + G I I Sbjct: 349 QGV--EDVSFEAKPGQTVAIVGPTGAGKST----LINLLQRVFDPQSGRILIDGTDIRTV 402 Query: 400 FIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459 I + Q LF SI +NI + + + A+ H+ I +GY Sbjct: 403 TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD 462 Query: 460 TTYCSDEIPYNIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 T +V Q++ ++R + +P IL++DE LD E + Sbjct: 463 T----------VVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKA 512 Query: 508 LLKQFKENKKTIVIISHDPTIISMSDFSLIFH 539 L + + + T II+H + + +D L+F Sbjct: 513 ALDELMKGRTTF-IIAHRLSTVRNADRILVFD 543 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 54.0 bits (130), Expect = 9e-08 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 34/185 (18%) Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 N + KNI R + + NL+ TI +G+ + GPSGCGK+ L + G LEK Sbjct: 4 KNFVVLKNITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG---LEKP 58 Query: 388 TISFGDRQISRDFIE-----KFSAQ---IGYLSQHCSLFP-ISITENI---ILSHDQNSL 435 T + QI FI+ S Q I + Q +LFP +S+ EN+ + Sbjct: 59 T----EGQI---FIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKE 111 Query: 436 HIAQKTAKIVGCHEDILSLKN--GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493 Q+ ++ L L + G++ Y D+I Q++ L+R + P +LL DEP Sbjct: 112 ERKQRV-------KEALELVDLAGFEDRYV-DQISGGQQQRVALARALILKPKVLLFDEP 163 Query: 494 LYHLD 498 L +LD Sbjct: 164 LSNLD 168 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 53.7 bits (129), Expect = 1e-07 Identities = 47/201 (23%), Positives = 98/201 (48%), Gaps = 12/201 (5%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 T+TAKN+ K R + +++S T+ G + GP+G GK+ ++G++ + G I Sbjct: 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60 Query: 390 SFGDRQIS-RDFIEKFSAQIGYLSQHCSLF-PISITENII-LSHDQNSLHIAQKTAKIVG 446 D IS + IGYL Q S+F +S+ +N++ + ++ L Q+ + Sbjct: 61 IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE 120 Query: 447 CHED--ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 E+ I L++ + E +++ ++R +A NP +L+DEP +D + + Sbjct: 121 LMEEFHIEHLRDSMGQSLSGGE-----RRRVEIARALAANPKFILLDEPFAGVDPISVID 175 Query: 505 FYTLLKQFKENKKTIVIISHD 525 +++ +++ ++I H+ Sbjct: 176 IKRIIEHLRDSGLGVLITDHN 196 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 53.7 bits (129), Expect = 1e-07 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 20/191 (10%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF--GDRQI---SRDFIEKF 404 N+S + EG I G SG GK+ + G+L G ++ GD + + Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361 Query: 405 SAQ--IGYLSQHCSLFPIS-----ITENIILS-HDQNSLHIAQKTAKIVGCHED-ILSLK 455 A+ IG L Q L+P +TE I L D+ + A T K+VG E+ + Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421 Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF-YTLLKQFKE 514 + Y DE+ ++ L++++ P I+++DEP +D K + +++LK +E Sbjct: 422 DKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 Query: 515 NKKTIVIISHD 525 ++T +I+SHD Sbjct: 477 MEQTFIIVSHD 487 Score = 49.0 bits (117), Expect = 3e-06 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 55/244 (22%) Query: 331 ITAKNIV--FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--K 386 I KN+ F K+ + +N+SFTI EG I G SG GKS + + G+ E Sbjct: 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS 56 Query: 387 GTI----------------SFGDRQISR----------DFIE-------KFSAQIGYLSQ 413 G I S DF + +I + Q Sbjct: 57 GRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ 116 Query: 414 HCSLFPI----SITENIILSHDQNSLH-IAQKTAKIVGCHEDILSLKN-GYQTTYCSDEI 467 F + ++ +N++ +L I + + VG D++ + ++ T+ + ++ Sbjct: 117 RT--FALYGDDTVLDNVL-----EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169 Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVIISHDP 526 Q++ L+R +A P + L DEP LD + + L++ K + ++V+ SH P Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229 Query: 527 TIIS 530 +I Sbjct: 230 EVIE 233 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 53.3 bits (128), Expect = 2e-07 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 28/204 (13%) Query: 340 DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR---QI 396 K L N+S +P G + G SG GKS + C+ L G++ + + Sbjct: 15 TKTIQAL--NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72 Query: 397 SRDFIEKFSAQIGYLSQHCSLFPI-SITENIILS---HDQNSLHIAQKTAKIVGCHEDIL 452 S + K QIG + QH +L ++ N+ L + I +K ++L Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT-------ELL 125 Query: 453 SLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 +L D P N+ Q++ ++R +A+NP +LL DE LD + L Sbjct: 126 ALVG---LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182 Query: 509 LKQFKENKK---TIVIISHDPTII 529 LK+ N++ TI++I+H+ ++ Sbjct: 183 LKEI--NRRLGLTILLITHEMDVV 204 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 53.0 bits (127), Expect = 2e-07 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 23/197 (11%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--RDF---- 400 + + +S G I G SG GKS FL C+ L +G+I + I+ RD Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 Query: 401 -------IEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDIL 452 + ++ + QH +L+ +++ EN++ + Q L ++++ A+ + Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLGLSKQEAR----ERAVK 134 Query: 453 SLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 L + P ++ Q++ ++R +A P +LL DEP LD E + Sbjct: 135 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194 Query: 509 LKQFKENKKTIVIISHD 525 ++Q E KT+V+++H+ Sbjct: 195 MQQLAEEGKTMVVVTHE 211 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 53.0 bits (127), Expect = 2e-07 Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 38/220 (17%) Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 M+ + + + +R+ T+ ++ SFT+P GS + G +G GKS ++G + Sbjct: 2 MQQAGIVVNDVTVTWRNGHTA---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSL---FPISITENIIL------------ 428 L G IS + + + + Y+ Q + FP+ + E++++ Sbjct: 59 LASGKISILGQPTRQALQKNL---VAYVPQSEEVDWSFPV-LVEDVVMMGRYGHMGWLRR 114 Query: 429 --SHDQNSLHIAQKTAKIVGC-HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNP 485 D+ + A +V H I L G + +++ L+R IA Sbjct: 115 AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK-------------KRVFLARAIAQQG 161 Query: 486 AILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 ++L+DEP +D + + +LL++ ++ KT+++ +H+ Sbjct: 162 QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 52.7 bits (127), Expect = 3e-07 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 49/229 (21%) Query: 331 ITAKNIVFR-DKKT--SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 IT + + R KT R +++ +IP GS I G +G GKS L + GLL G Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHC---------SLFPISITENIILS------HDQ 432 T++ G+R I+ K + ++ L + LF ++ ++I ++ Sbjct: 63 TVTIGERVITA---GKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119 Query: 433 NSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAIL 488 ++ A++ ++VG E++L P+ + ++++ ++ ++A P +L Sbjct: 120 DAKQKAREMIELVGLPEELL------------ARSPFELSGGQMRRVAIAGVLAMEPEVL 167 Query: 489 LMDEPLYHLD----NEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533 ++DEP LD E FY L KE T V+++H SM D Sbjct: 168 VLDEPTAGLDPKGRKEMMEMFYKL---HKEKGLTTVLVTH-----SMED 208 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 52.3 bits (125), Expect = 3e-07 Identities = 68/271 (25%), Positives = 103/271 (38%), Gaps = 66/271 (24%) Query: 313 NSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371 N+ D KK I KN+ F D + I ++L+FT+ EG G SGCGK Sbjct: 370 NNDDGKKLK-----DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGK 424 Query: 372 SNFLLCMLGLLTLEKGTISFGDRQISRDF-IEKFSAQIGYLSQHCSLFPISITEN----- 425 S L + L +G I D +D ++ + ++IG +SQ LF SI N Sbjct: 425 STILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSL 484 Query: 426 ----------------------------------------IILSHDQNSLHIAQK----- 440 + + D N L +K Sbjct: 485 YSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI 544 Query: 441 -------TAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMD 491 +K V H+ + +L + Y+T S+ + QK R+S R I NP IL++D Sbjct: 545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604 Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522 E LDN+++ + K N+ I II Sbjct: 605 EATSSLDNKSEYLVQKTINNLKGNENRITII 635 Score = 47.7 bits (113), Expect = 8e-06 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 11/136 (8%) Query: 411 LSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYN 470 +SQ LF +SI ENI + + ++ K E I SL N Y T PY Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVG----PYG 1356 Query: 471 IV------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523 Q+I ++R + P ILL+DE LD+ ++ + K+ KTI+ I+ Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416 Query: 524 HDPTIISMSDFSLIFH 539 H I SD ++F+ Sbjct: 1417 HRIASIKRSDKIVVFN 1432 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 52.0 bits (124), Expect = 4e-07 Identities = 41/185 (22%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS----RDFIEKFS 405 ++ + +GS + G +G GKS L + GLL +G ++ GD +S + I+ Sbjct: 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83 Query: 406 AQIGYLSQ--HCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463 ++G + Q LF ++ +++ QN +K KI +++ L + + Sbjct: 84 KKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKAEKIAAEKLEMVGLADEFW---- 138 Query: 464 SDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519 ++ P+ + ++++ ++ I+A P +L++DEP LD +A+ L + ++ +T+ Sbjct: 139 -EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197 Query: 520 VIISH 524 V+++H Sbjct: 198 VLVTH 202 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 51.7 bits (124), Expect = 5e-07 Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 19/199 (9%) Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397 +++ + N+SF+I EG I G SG GKS L + GL T G + F + +S Sbjct: 15 YQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS 74 Query: 398 RDFIEKFSA---------QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC 447 K S+ ++G++ Q L P + EN+ + A+ ++ Sbjct: 75 -----KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR---A 126 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 E + ++ ++ + E+ Q++ ++R + NNP ++L DEP +LD ++ + Sbjct: 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186 Query: 508 LLKQFKENKKT-IVIISHD 525 LL + + T ++++HD Sbjct: 187 LLGELNRLQGTAFLVVTHD 205 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 51.5 bits (123), Expect = 6e-07 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 + + Q +SF +P G + G +G GK+ L + GLL EKG I F + I +D + + Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-LCTY 72 Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 Q+ ++ + P L+ +N L+ + VG E + Y Sbjct: 73 QKQLCFVGHRSGINP-------YLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPC 125 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 + +++ L R+ + + L+DEPL LD + T +++ + +++ SH Sbjct: 126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185 Query: 525 DPTIISMSDF 534 ++ +D+ Sbjct: 186 QDLPLNKADY 195 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 51.6 bits (123), Expect = 6e-07 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 47/220 (21%) Query: 337 VFRDKKTSRLICQN-----LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK----- 386 + R +K ++ Q+ + I G + GPSG GKS L + GL+T +K Sbjct: 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63 Query: 387 ----GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILS------------ 429 G + +++RD I K A GY+ Q +L +S+ EN+++ Sbjct: 64 IELLGRTVQREGRLARD-IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCF 122 Query: 430 ------HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIAN 483 Q +L + + H+ + +L G Q Q++ ++R + Sbjct: 123 SWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ-------------QRVAIARALMQ 169 Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 ++L DEP+ LD E+ L+ +N V+++ Sbjct: 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 51.4 bits (123), Expect = 6e-07 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 30/211 (14%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 I ++ T+ + + ++ EGS + GP+G GK+ L + G LT GT+ Sbjct: 3 MIDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60 Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSL-FPISITENIIL----------SHDQNSLHIA 438 + S ++ + Q SL F + + + + + + Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120 Query: 439 QKTAKIVG----CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494 ++ + G + SL G + Q++ L+R +A +LL+DEP Sbjct: 121 ERAMERTGVAQFADRPVTSLSGGER-------------QRVLLARALAQATPVLLLDEPT 167 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 LD + L+++ ++ KT V HD Sbjct: 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 51.6 bits (123), Expect = 6e-07 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 20/190 (10%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL------LTLEKGTISFGDRQISRDF-IE 402 N++ I + S + GPSGCGKS FL + + + +E I G S +F I Sbjct: 25 NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 + +IG + Q + F +SI +NI + +K +IV SLK Sbjct: 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVE-----QSLKKSALWNE 139 Query: 463 CSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 D++ N + Q++ ++R +A P ++LMDEP LD + L+ KE+ Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES 199 Query: 516 KKTIVIISHD 525 TI+I++H+ Sbjct: 200 -YTIIIVTHN 208 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 51.4 bits (124), Expect = 7e-07 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 50/174 (28%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCML-GLLTLEKGTISFGDRQIS------RDFIEK 403 + + +G ++ GPSGCGKS LL M+ GL + G I G R ++ RD Sbjct: 23 IDLDVADGEFIVLVGPSGCGKST-LLRMVAGLERITSGEIWIGGRVVNELEPADRD---- 77 Query: 404 FSAQIGYLSQHCSLFP-ISITENII-------LSHDQNSLHIAQ---KTAKIVGCHEDIL 452 I + Q+ +L+P +S+ EN+ + + I + + A+I+ E +L Sbjct: 78 ----IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE----IEERVAEAARILEL-EPLL 128 Query: 453 SLK----NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 K +G Q Q++ + R I PA+ L DEPL +LD AK Sbjct: 129 DRKPRELSGGQR------------QRVAMGRAIVREPAVFLFDEPLSNLD--AK 168 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 50.9 bits (123), Expect = 8e-07 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 24/119 (20%) Query: 305 LNDFTTLLNSSDSKKE-------PISMRLSNNTITAKNIV--FRDKKTSRLICQNLSFTI 355 L + LL+ K+ P RL + I A+N+ F D RL+ +LSF++ Sbjct: 292 LARYEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD----RLLIDDLSFSL 347 Query: 356 PEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQH 414 P G I GP+G GKS + G + GTI G+ + ++ Y+ Q Sbjct: 348 PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-----------TVKLAYVDQS 395 Score = 36.6 bits (86), Expect = 0.015 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%) Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525 L R++ P +LL+DEP HLD E+ L+QF + T+V ++HD Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLDAESVA----WLEQFLHDYPGTVVAVTHD 219 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 50.8 bits (121), Expect = 9e-07 Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 25/206 (12%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTI 389 NI + DK+ +N++ + G+ + GPSGCGK+ FL + + L G I Sbjct: 11 NIYYGDKQA----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66 Query: 390 SFGDRQISRDFIEKFSAQ--IGYLSQHCSLFP-ISITENII-------LSHDQNSLHIAQ 439 + I ++ + + +G + Q + FP +S+ +N++ + + + +A+ Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126 Query: 440 KTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499 ++ + +++ T + Q++ ++R +A P ILLMDEP LD Sbjct: 127 RSLRGAALWDEVKDRLKTPATGLSGGQ-----QQRLCIARALAVEPEILLMDEPTSALDP 181 Query: 500 EAKNNFYTLLKQFKENKKTIVIISHD 525 + L+ K+ TI+I++H+ Sbjct: 182 ASTARIEDLMTDLKK-VTTIIIVTHN 206 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 50.9 bits (122), Expect = 9e-07 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 33/193 (17%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT-----ISFGDRQISRDFIEKF 404 N+ I +G +I GPSG GKS L C+ L + G + D ++ I + Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ- 77 Query: 405 SAQIGYLSQHCSLFP-ISITENIILSHDQ---NSLHIAQKTAKI----VGCHEDI----L 452 + G + Q LFP ++ EN++ + S A+K A+ VG E Sbjct: 78 --EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS 135 Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512 L G Q Q++ ++R +A P ++L DEP LD E ++ +++ Sbjct: 136 ELSGGQQ-------------QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182 Query: 513 KENKKTIVIISHD 525 E T+VI++H+ Sbjct: 183 AEEGMTMVIVTHE 195 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 50.2 bits (120), Expect = 1e-06 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 28/198 (14%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSA 406 + ++ I +G I G +G GKS + G+L G I F + I SR + K Sbjct: 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 Query: 407 QIGYLSQH--CSLFPISITE-------NIILSHDQ---NSLHIAQKTAKIVGCHEDILSL 454 +G + Q LF S+ + N+ L D+ + ++T I L Sbjct: 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTG--------IEHL 134 Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-K 513 K+ + T+C + + +++ ++ ++ P +L++DEP LD + LL + K Sbjct: 135 KD--KPTHC---LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 Query: 514 ENKKTIVIISHDPTIISM 531 E TI+I +HD I+ + Sbjct: 190 ELGLTIIIATHDIDIVPL 207 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 50.0 bits (119), Expect = 1e-06 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 11/186 (5%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 + I +G I G +GCGKS GL ++G I +S D + + Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA 420 Query: 411 LSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYN 470 + LF I + + SL AQ+ + + + + G+ TT + Sbjct: 421 IFADFHLFDDLIGPD---EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTG 474 Query: 471 IVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENKKTIVIISHDPT 527 Q+ RL+ I A + ILL DE D K FY LL K KTI+IISHD Sbjct: 475 --QQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 Query: 528 IISMSD 533 ++D Sbjct: 533 YFELAD 538 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 50.0 bits (120), Expect = 2e-06 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 24/207 (11%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQI 408 ++SFT+ +G ++G G G++ + + G L G ++ ++ R + + I Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 Query: 409 GYLSQHCS----LFPISITENIIL------SHDQNSL-HIAQKTAKIVGCHEDILSLKNG 457 Y+S+ + +S+ EN+ L S SL H ++ A V + ++K Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQA--VSDFIRLFNIK-- 385 Query: 458 YQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 T ++ + QK+ ++R + P +L++DEP +D AK Y L+ QFK Sbjct: 386 ---TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK 442 Query: 514 ENKKTIVIISHD-PTIISMSDFSLIFH 539 +I+++S + P ++ MSD L+ H Sbjct: 443 AEGLSIILVSSEMPEVLGMSDRILVMH 469 Score = 30.7 bits (70), Expect = 0.92 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS----RDFIEKFSAQIGYLSQHCSLFP- 419 G +G GKS + + G+ T + G+I + ++++ + E A IG + Q +L P Sbjct: 37 GENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE---AGIGIIHQELNLIPQ 93 Query: 420 ISITENIIL 428 ++I ENI L Sbjct: 94 LTIAENIFL 102 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 50.0 bits (119), Expect = 2e-06 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 27/242 (11%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL-TLEK- 386 N I+AK++ L +L F E + I GPSGCGKS FL C+ + +E Sbjct: 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALI--GPSGCGKSTFLRCLNRMNDDIENI 60 Query: 387 ---GTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKT 441 G I F + I S+ + + ++G + Q + FP S+ +N+ L IA Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAY-----GLKIAGVK 115 Query: 442 AKIVGCHEDILSLKNGYQTTYCSDEIPYNI-------VQKIRLSRIIANNPAILLMDEPL 494 K + SLK D + N Q+I ++R +A P ++L+DEP Sbjct: 116 DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQD 551 LD + + L + K ++ T ++++H+ +SD + + G L G T++ Sbjct: 176 SALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFL--MNGDLIEAGPTEE 232 Query: 552 IF 553 +F Sbjct: 233 MF 234 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 49.8 bits (119), Expect = 2e-06 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 40/229 (17%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-KGTISFGDRQIS-RDFIEKFSAQ 407 ++SF++ G +AG G G++ + + G + +G + + + R+ + A Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337 Query: 408 IGYLSQ----HCSLFPISITENIILS--------------HDQNSLHIAQKTAKIVGCHE 449 I + + H + + + +NI LS + + A + K+ Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397 Query: 450 D--ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 I L G Q QK L++++ NP +L++DEP +D AK Y Sbjct: 398 FLPIGRLSGGNQ-------------QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444 Query: 508 LLKQFKENKKTIVIISHD-PTIISMSDFSLIFHP--IQGSLF--GLTQD 551 L+ Q + I+++S + ++ +SD L+ ++G LTQ+ Sbjct: 445 LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQE 493 Score = 30.6 bits (69), Expect = 1.1 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 6/181 (3%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFL--LCMLGLLTLEKGTISFGDRQI-SRDFIEKFSA 406 + + G C + G +G GKS + L + G I + + + + + A Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 Query: 407 QIGYLSQHCSLFP-ISITENIILSHD-QNSLHIAQKTAKIVGCHEDILSLK-NGYQTTYC 463 I + Q +L P +S+ ENI L ++ A + + L+ + T Sbjct: 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP 138 Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 + Q + +++ + +L++DEP L + +++ K + V IS Sbjct: 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198 Query: 524 H 524 H Sbjct: 199 H 199 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 49.6 bits (119), Expect = 2e-06 Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 44/230 (19%) Query: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC--- 377 + + + I +N+ F K L +N++ I + GPSGCGKS L Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKFHAL--KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61 Query: 378 MLGLLTLEK--GTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENII------ 427 M L ++ G I I + I A++G + Q + FP+SI +NI Sbjct: 62 MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLF 121 Query: 428 --LSH---DQNSLHIAQKTA-------KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKI 475 LS D+ K A K+ H+ SL G Q Q++ Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVKDKL---HQSGYSLSGGQQ-------------QRL 165 Query: 476 RLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 ++R IA P +LL+DEP LD + L+ + K++ T+VI++H+ Sbjct: 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTHN 214 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 49.7 bits (119), Expect = 2e-06 Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 40/205 (19%) Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393 KN+ R K + N+S T+P+ S + GP+G GKS L + G+L G I F Sbjct: 4 KNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61 Query: 394 RQISRDFIEKFSAQI------GYLSQHCSLFPISITENIILSHDQNSLHIA------QKT 441 +R + K + I L+ +L + + S L+I +K Sbjct: 62 HPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK 121 Query: 442 AKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA--NNPAILLMDEPLYHLDN 499 AK +++ K RL IA N+P +L++DEP LD Sbjct: 122 AK------------------------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 Query: 500 EAKNNFYTLLKQFKENKKTIVIISH 524 L++ F E T+++ SH Sbjct: 158 IGIQELRELIRSFPEQGITVILSSH 182 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 48.9 bits (117), Expect = 4e-06 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 39/203 (19%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG-----DRQISRDFIEKF 404 N++ I +G + G +G GKS + + GLL G I D+++ I K Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK- 83 Query: 405 SAQIGYLSQH--CSLFPISITENII-------LSHDQNSLHIAQKTAKIVGCHEDILSLK 455 ++G + Q+ LF +I ++I LS ++ + ++ IVG + Sbjct: 84 --KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-KRAMNIVGLDYEDYK-- 138 Query: 456 NGYQTTYCSDEIPYNIV--QKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 D+ P+ + QK R ++ ++A P IL++DEP LD + ++ +K+ Sbjct: 139 ---------DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189 Query: 512 F-KENKKTIVIISHDPTIISMSD 533 KE TI+++SH SM D Sbjct: 190 LHKEYNMTIILVSH-----SMED 207 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 48.9 bits (117), Expect = 4e-06 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 26/198 (13%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL----TLEKGTISFGDRQISRDFIEKF 404 Q+L+ ++ G + G SG GKS L +LGLL T G I R + I Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR-- 60 Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQ-----NSLHI--AQKTAKIVGCHEDILSLKNG 457 I + Q+ P + + + SL Q A I+ E + L + Sbjct: 61 GRHIATIMQN----PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV-GLPDP 115 Query: 458 YQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 + + P+ + +Q++ ++ + P L+ DEP LD + LL++ + Sbjct: 116 EEVL---KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172 Query: 514 ENKKT-IVIISHDPTIIS 530 + T I++I+HD +++ Sbjct: 173 QLFGTGILLITHDLGVVA 190 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 48.6 bits (116), Expect = 4e-06 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403 R + ++S + G + GP+G GKS + +LGL+ ++G I + Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--------- 66 Query: 404 FSAQIGYLSQHCSL---FPISITENIILSHDQNSLHI--AQKTAKIVGCHEDILSLKNGY 458 +IGY+ Q L P+++ + L I A K + + + +G Sbjct: 67 --LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGG 124 Query: 459 QTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK-ENKK 517 +T Q++ L+R + N P +L++DEP +D + Y L+ Q + E Sbjct: 125 ET------------QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC 172 Query: 518 TIVIISHD 525 ++++SHD Sbjct: 173 AVLMVSHD 180 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 48.9 bits (117), Expect = 4e-06 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 49/203 (24%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-GTISFGDRQISRDF-------- 400 +++ P+G ++ GPSG GKS+ LL +L LL + + GT++ DF Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSS-LLRVLNLLEMPRSGTLNIAGNHF--DFSKTPSDKA 76 Query: 401 IEKFSAQIGYLSQHCSLFP-ISITENII--------LSHDQ---------NSLHIAQKTA 442 I + +G + Q +L+P +++ +N+I LS DQ L + Sbjct: 77 IRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136 Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 + L L G Q Q++ ++R + P +LL DEP LD E Sbjct: 137 RFP------LHLSGGQQ-------------QRVAIARALMMEPQVLLFDEPTAALDPEIT 177 Query: 503 NNFYTLLKQFKENKKTIVIISHD 525 +++++ E T VI++H+ Sbjct: 178 AQIVSIIRELAETGITQVIVTHE 200 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 48.5 bits (116), Expect = 4e-06 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 12/186 (6%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR---QISRDFIEKFS 405 +N+SFT+ G + G SG GKS L +L L+ + G I F + ++R + Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVR 361 Query: 406 AQIGYLSQ--HCSLFPISITENII---LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 +I + Q + SL P II L Q +L AQ+ +++ E++ L + Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV-GLDPETRH 420 Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520 Y + E Q+I ++R + P+++++DEP LD + LLK ++ + Sbjct: 421 RYPA-EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAY 479 Query: 521 I-ISHD 525 + ISHD Sbjct: 480 LFISHD 485 Score = 33.9 bits (78), Expect = 0.11 Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382 I ++ FR ++T R + ++S I G + G SG GKS L +L LL Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 48.6 bits (116), Expect = 4e-06 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 27/226 (11%) Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFI 401 S+ N++F P S + GP+G GKS G+L G++ I+++ I Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI 73 Query: 402 EKFSAQIGYLSQHC--SLFPISITENII-----LSHDQNSL-HIAQKTAKIVGCHEDILS 453 + +G + Q+ +F ++ ++I L D+ ++ H ++G E++ Sbjct: 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL-EELR- 131 Query: 454 LKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509 D +P+++ +++ ++ +IA P +L++DEP LD + L Sbjct: 132 -----------DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180 Query: 510 KQFKENKKTIVIIS-HDPTII-SMSDFSLIFHPIQGSLFGLTQDIF 553 E VI S H ++ M+D+ + + +G ++IF Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 48.5 bits (115), Expect = 5e-06 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 38/235 (16%) Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376 +KK P + NNT ++ F+ K + C+I G +G GKS + Sbjct: 17 AKKTPFEFKALNNT----SLTFKKNKVT----------------CVI-GTTGSGKSTMIQ 55 Query: 377 CMLGLLTLEKGTISFGDRQISRDF-----IEKFSAQIGYLSQ--HCSLFPISITENII-- 427 GL+ E G GD I + +++ +IG + Q LF +I ++I Sbjct: 56 LTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 Query: 428 -LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPA 486 ++ +N +K +++ ++ L Y E+ +++ L+ IIA + Sbjct: 116 PVNLGENKQEAYKKVPELL----KLVQLPEDY-VKRSPFELSGGQKRRVALAGIIAMDGN 170 Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD-PTIISMSDFSLIFH 539 L++DEP LD + + +F L ++ KE KK I++++H+ ++ ++D ++ H Sbjct: 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 48.4 bits (116), Expect = 5e-06 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 27/166 (16%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++SFT+ G + GP+G GKS + L ++G IS + R A++ Sbjct: 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL-ARL 76 Query: 409 GYLSQHCSL-FPISITENII-------LSHDQNSLHIAQKTAKIVGC----HEDILSLKN 456 G + Q +L +S+ +N+ LS + IA A++ G + + L Sbjct: 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-GLAERADDKVRELNG 135 Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 G++ +++ ++R + + PA+LL+DEP LD ++ Sbjct: 136 GHR-------------RRVEIARALLHRPALLLLDEPTVGLDPASR 168 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 48.1 bits (115), Expect = 5e-06 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 22/162 (13%) Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405 +I ++++ I EG + GPSGCGKS L + GL + G + G+++++ + Sbjct: 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND--VPPAE 74 Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQ-KTAKI---VGCHEDILSLKNGYQT 460 +G + Q +L+P +S+ EN+ L +A K +I V ++L Q Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSF-----GLKLAGAKKEEINQRVNQVAEVL------QL 123 Query: 461 TYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLD 498 + D P + Q++ + R + P++ L+DEPL +LD Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 48.0 bits (114), Expect = 6e-06 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 29/243 (11%) Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--- 385 N I +++ + L NL IP+ + + GPSG GKS L L+ L Sbjct: 2 NKIEIRDLKVSFGQVEVLDGVNLE--IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEA 59 Query: 386 --KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTA 442 G + + I + + + ++ + Q + P +SI EN+ L N L ++K Sbjct: 60 RVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK-- 117 Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNI-----------VQKIRLSRIIANNPAILLMD 491 E ++ + DE+ + Q++ ++R +A P +LL D Sbjct: 118 ------ELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQ 550 EP +LD E +L + K++ TIV+++H P + +SD+ + Q +G T+ Sbjct: 172 EPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230 Query: 551 DIF 553 ++F Sbjct: 231 EVF 233 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 47.9 bits (114), Expect = 6e-06 Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 30/199 (15%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ 407 C+++SF + G I G SG GKS L C+ G L + GT ++ R S +E + Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR--SGAELELYQ-- 74 Query: 408 IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN---GYQTTYCS 464 LS+ + + + ++ L + +G E ++++ G Sbjct: 75 ---LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIG--ERLMAIGARHYGNIRAAAH 129 Query: 465 D-----EIPYNIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 D EI + Q+++++R + P ++ MDEP LD + Sbjct: 130 DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189 Query: 508 LLKQF-KENKKTIVIISHD 525 LL+ ++ ++I++HD Sbjct: 190 LLRGLVRDLGLAVIIVTHD 208 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 47.6 bits (114), Expect = 8e-06 Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 44/190 (23%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 +NL+ + G I G +G GK+ L ++G L + GT+ + + +A I Sbjct: 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 Query: 409 GYLSQ-HCSLFP--ISITENIILSHDQNSLHIAQ-KTAKIVGCHEDILSLKNGY--QTTY 462 GY +Q H F +++ + ++Q + +D +++ G + + Sbjct: 385 GYYAQDHAYDFENDLTLFD-----------WMSQWRQEG-----DDEQAVR-GTLGRLLF 427 Query: 463 CSDEIPYNIV-----QKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 D+I ++ +K R+ +++ P +L+MDEP H+D E+ + L+++ Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--- 484 Query: 516 KKTIVIISHD 525 + T++ +SHD Sbjct: 485 EGTLIFVSHD 494 Score = 37.6 bits (88), Expect = 0.008 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 NP ILL+DEP +LD N L E T++IISHD Sbjct: 173 NPDILLLDEPTNNLD---INTIRWLEDVLNERNSTMIIISHD 211 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 47.3 bits (113), Expect = 1e-05 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 37/190 (19%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ--IG 409 T+ G I GPSG GKS L + G LT G+++ +D ++ + Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG----QDHTTTPPSRRPVS 74 Query: 410 YLSQHCSLFP-ISITENI--------ILSHDQNSLHIAQKTAKIVGCHEDILS-----LK 455 L Q +LF +++ +NI L+ Q A+ +G ED+L+ L Sbjct: 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR--EKLHAIARQMGI-EDLLARLPGQLS 131 Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 G + Q++ L+R + ILL+DEP LD + TL+ Q + Sbjct: 132 GGQR-------------QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178 Query: 516 KK-TIVIISH 524 ++ T++++SH Sbjct: 179 RQLTLLMVSH 188 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 47.5 bits (113), Expect = 1e-05 Identities = 41/196 (20%), Positives = 88/196 (44%), Gaps = 25/196 (12%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI------------ 396 L+F++ G + GPSG GKS L ++ L +++G I Q+ Sbjct: 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVP 76 Query: 397 -SRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL 454 + + +IG + Q +LFP ++ +N+ + L +A+ A+ + + L Sbjct: 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-PVLVLGMARAEAE-----KRAMEL 130 Query: 455 KNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 + +D +P + Q++ ++R +A P ++L DE LD E +++ Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190 Query: 511 QF-KENKKTIVIISHD 525 + E+ T+++++H+ Sbjct: 191 RLASEHDLTMLLVTHE 206 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 47.3 bits (112), Expect = 1e-05 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 44/186 (23%) Query: 365 GPSGCGKSNFLLCMLGLLTLEKG-----TISFGDRQISRDFIEKFSAQ--IGYLSQHCSL 417 GPSGCGKS L + + L KG + F + + ++ + IG + Q + Sbjct: 41 GPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 Query: 418 FPISITENIILSHDQNSL---------HIAQKTA---------KIVGCHEDILSLKNGYQ 459 F +SI +N+ N H Q A K+ G LSL G Q Sbjct: 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSG-----LSLSGGQQ 155 Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519 C ++R IA P +LL+DEP LD A L+ + K++ TI Sbjct: 156 QRLC-------------IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTI 201 Query: 520 VIISHD 525 +++H+ Sbjct: 202 ALVTHN 207 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 47.3 bits (113), Expect = 1e-05 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530 K L R + +NP +LL+DEP HLD E LK F + +I+ ISHD + I Sbjct: 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIR 217 Score = 37.2 bits (87), Expect = 0.011 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 336 IVFRDKKTS-----RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 IVF + + + + ++ S + G + GP+GCGK+ L MLG L + G I Sbjct: 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377 Query: 391 FG 392 G Sbjct: 378 CG 379 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 47.2 bits (112), Expect = 1e-05 Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 46/253 (18%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD- 393 NI F ++ +NLSF++ G I G SG GKS L ++ LL G + Sbjct: 19 NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78 Query: 394 --RQISRDFIE--KFS---------AQIGYLSQH--CSLFPI-----SITENIILSHD-- 431 R+ SR IE + S A + + Q SL P+ I E+I L Sbjct: 79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS 138 Query: 432 -QNSLHIAQKTAKIVGCHE--DILS-----LKNGYQTTYCSDEIPYNIVQKIRLSRIIAN 483 + ++ A++ V E ILS L G + Q++ ++ ++ Sbjct: 139 REEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMR-------------QRVMIAMALSC 185 Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI-ISHDPTIIS-MSDFSLIFHPI 541 PA+L+ DEP LD + L+K ++ VI I+HD +++ ++D L+ + Sbjct: 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245 Query: 542 QGSLFGLTQDIFK 554 + G + IF Sbjct: 246 EAVETGSVEQIFH 258 Score = 41.0 bits (96), Expect = 7e-04 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 8/188 (4%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFIEKFS 405 + +SF + G + G SG GKS +L L+ + G I F ++I S ++ Sbjct: 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALR 400 Query: 406 AQIGYLSQ--HCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 I ++ Q + SL P ++ ++I+ + L + A V + + L + Y Sbjct: 401 RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY 460 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVI 521 E Q+I ++R +A NP +++ DE + LD + LL ++ + Sbjct: 461 -PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519 Query: 522 ISHDPTII 529 ISHD ++ Sbjct: 520 ISHDMAVV 527 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 47.1 bits (113), Expect = 1e-05 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 37/164 (22%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRD-FIEKFS 405 I + +S +P+G + G +G GK+ L ++GLL ++ G+I I++ E+ Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILS----------- 453 A I Y+ Q +FP +++ EN++ + +++ KI ++I Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAA----LPRRSRKIP---DEIYELFPVLKEMLGR 127 Query: 454 ----LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493 L G Q Q++ ++R + P +LL+DEP Sbjct: 128 RGGDLSGGQQ-------------QQLAIARALVTRPKLLLLDEP 158 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 47.0 bits (112), Expect = 1e-05 Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 49/206 (23%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----------KGTISFGDRQIS 397 ++++ I S GPSGCGKS L TL +G + + Sbjct: 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLR------TLNRMHEVIPGARVEGEVLLDGEDLY 74 Query: 398 RDFIEKFSA--QIGYLSQHCSLFP-ISITENII----LSHDQNSL---HIAQKTAKIVGC 447 ++ + IG + Q + FP +SI +N++ L+ +N + +K+ + Sbjct: 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL 134 Query: 448 HEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499 ++ L G Q Q++ ++R IA P +LLMDEP LD Sbjct: 135 WNEVKDRLDKPGGGLSGGQQ-------------QRLCIARAIAVEPDVLLMDEPCSALDP 181 Query: 500 EAKNNFYTLLKQFKENKKTIVIISHD 525 + L+ + K++ TIVI++H+ Sbjct: 182 ISTLAIEDLINELKQD-YTIVIVTHN 206 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 46.7 bits (111), Expect = 1e-05 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 19/239 (7%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL---T 383 +N + K++ F + + ++SF+IP GS + G +G GKS + GLL Sbjct: 2 KDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHC-SLFPISITENIILSHDQNSLHIAQKTA 442 I+ ++ + ++G + Q+ + F + + + +N + Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI 121 Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLD 498 KIV D+L+ Y E P N+ Q++ ++ I+A P I+++DE LD Sbjct: 122 KIV---RDVLADVG--MLDYIDSE-PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 Query: 499 NEAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSDFSLIFHPIQGSLF--GLTQDIFK 554 K L+++ K+N T++ I+HD +M+D L+ G L G +IF Sbjct: 176 PAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD--DGKLLAQGSPVEIFS 232 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 46.7 bits (112), Expect = 2e-05 Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 48/220 (21%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 I KNI VF + N+S IP G + G SG GKS + C+ L G Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61 Query: 389 ISFGDR---QISRDFIEKFSAQIGYLSQHCSLFPISIT--ENIILSHDQNSLHIAQKT-A 442 + + +S + K QIG + QH +L S T +N+ L L +A A Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS-SRTVFDNVALP-----LELAGTPKA 115 Query: 443 KI----------VGCHEDILS-LKNGYQTTYCSDEIPYNIV--QKIRLS--RIIANNPAI 487 +I VG LS + Y P + QK R++ R +A+NP + Sbjct: 116 EIKARVTELLELVG-----LSDKADRY---------PAQLSGGQKQRVAIARALASNPKV 161 Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKK---TIVIISH 524 LL DE LD + LLK N++ TIV+I+H Sbjct: 162 LLCDEATSALDPATTRSILELLKDI--NRELGLTIVLITH 199 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 45.7 bits (109), Expect = 4e-05 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIISM 531 QK L++ + NP IL++DEP +D AK Y L+ Q ++ IVI S P ++ + Sbjct: 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGL 471 Query: 532 SDFSLIFHP--IQGSLF--GLTQD 551 SD L+ H ++G L LTQ+ Sbjct: 472 SDRVLVMHEGKLKGDLINHNLTQE 495 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 45.1 bits (107), Expect = 5e-05 Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMS 532 Q++ ++R + N ++L DEP LD+ + +L Q ++ T++I++HDP + + + Sbjct: 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQA 210 Query: 533 D 533 + Sbjct: 211 E 211 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 45.1 bits (107), Expect = 5e-05 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 13/180 (7%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 ++F + EG GP+G GK+ + + LL GT + R+ K IG Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGI 70 Query: 411 LSQHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI-- 467 + Q+ S+ + EN+ + L + + E++L L ++ +D Sbjct: 71 VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA----EELLEL---FELGEAADRPVG 123 Query: 468 PYN--IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 Y+ + +++ ++ + + P +L +DEP LD + + ++ KE TI++ +H Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 44.7 bits (105), Expect = 7e-05 Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 7/215 (3%) Query: 328 NNTITAKNIVFRDKKTSRLICQN-LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 N + +N+VF+ +K S + N +SF+I +G I G +G GKS + GL + Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61 Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQH--CSLFPISITENIILSHDQNSLHIAQKTAKI 444 G + ++ + + +IG + Q+ ++ +++ + + + ++ Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121 Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 E +L++ T + Q++ ++ IIA P I+++DE LD + Sbjct: 122 ---DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 Query: 505 FYTLLKQFKENKK-TIVIISHDPTIISMSDFSLIF 538 ++ + KE + T++ I+HD + SD L+ Sbjct: 179 IMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVM 213 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 44.5 bits (105), Expect = 7e-05 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 44/231 (19%) Query: 322 ISMRLSNNTITAKNIVFRDKKTSRL-ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380 I +R+ N VF +K+ + L N+S+T + I G SG GKS + G Sbjct: 20 IILRVKNLYC-----VFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 Query: 381 LLTLEKGTISFGD------------------RQISRDFIEKFSAQIGYLSQ--HCSLFPI 420 L+ + GTI GD ++I ++ ++ + Q LF Sbjct: 75 LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKN--FKELRRRVSMVFQFPEYQLFKD 132 Query: 421 SITENII---LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--QKI 475 +I ++I+ ++ + + + + L + Y + P+ + QK Sbjct: 133 TIEKDIMFGPVALGVKKSEAKKLAKF----YLNKMGLDDSYL-----ERSPFGLSGGQKR 183 Query: 476 R--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 R ++ I+A P IL+ DEP LD + ++ L+ K N KT+ +I+H Sbjct: 184 RVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITH 234 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 44.3 bits (105), Expect = 8e-05 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 32/211 (15%) Query: 331 ITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 + +++ + T L + ++F +G + GP+G GKS L G+L G + Sbjct: 2 LETRDLKYSYPDGTEAL--KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59 Query: 390 SFGDRQISRD--FIEKFSAQIGYLSQHC--SLFPISITE-------NIILSHDQNSLHIA 438 I D + + +G + Q+ LF ++ E N+ LS ++ + Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV- 118 Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--QKIR--LSRIIANNPAILLMDEPL 494 ++ K VG G++ ++ P+++ QK R ++ I+A P I+++DEP Sbjct: 119 KEALKAVGM--------EGFE-----NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 LD + LL + TI+I +HD Sbjct: 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 44.5 bits (105), Expect = 8e-05 Identities = 55/180 (30%), Positives = 71/180 (39%), Gaps = 25/180 (13%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 N+SF +PEG I G +G GKS + G+ KGT+ D + S I S G Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV---DIKGSAALIAISSGLNG 98 Query: 410 YLSQHCSLFPISITENIILSHDQNSL---HIAQKTAKIVGCHEDILSLKNGYQTTYCSDE 466 L+ ENI L L I + +I+ DI TY S Sbjct: 99 QLTG---------IENIELKGLMMGLTKEKIKEIIPEIIE-FADIGKFIYQPVKTYSSG- 147 Query: 467 IPYNIVQKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 K RL I+ NP IL++DE L D + +FKE KTI ISH Sbjct: 148 ------MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 44.3 bits (105), Expect = 8e-05 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 38/270 (14%) Query: 279 MAP--LEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNI 336 M P + Q +N+ NV LK L+ L+ + L N P I+ KN Sbjct: 573 MLPNLITQAVNA----NVSLKRLEELLLAEERVLLPNPPLEPGLP--------AISIKNG 620 Query: 337 VFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG-LLTLEKGTISFGDR 394 F D K R N++ +P GS I G +G GK++ + MLG L ++ Sbjct: 621 YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV----- 675 Query: 395 QISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL 454 + R + Y+ Q +F ++ +NI+ + ++ + D+ L Sbjct: 676 -VIR-------GTVAYVPQVSWIFNATVRDNILFGSPFDPERY-ERAIDVTALQHDLDLL 726 Query: 455 KNGYQTTYCSDEIPYNIV--QKIRLS--RIIANNPAILLMDEPLYHLDNE-AKNNFYTLL 509 G T E NI QK R+S R + +N + + D+PL LD + F + Sbjct: 727 PGGDLTEI--GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784 Query: 510 KQFKENKKTIVIISHDPTIISMSDFSLIFH 539 K + KT V++++ +S D ++ H Sbjct: 785 KD-ELRGKTRVLVTNQLHFLSQVDRIILVH 813 Score = 32.0 bits (73), Expect = 0.41 Identities = 26/100 (26%), Positives = 46/100 (46%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 S+ +I +++V R + + LSF I I G +G GKS+ L + ++ LE+ Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426 G I IS+ + +G + Q LF ++ N+ Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 44.1 bits (104), Expect = 1e-04 Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 29/232 (12%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQISRDFIE 402 R I ++ G + GPSG GKS L + G + GTI +R+ ++ ++ Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK 140 Query: 403 KFSAQIGYLSQHCSLFP-ISITENII---LSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458 + G+++Q L+P +++ E ++ L SL K KI+ I L Sbjct: 141 R----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSL---TKQEKILVAESVISELG--- 190 Query: 459 QTTYCSDEIPYNIV---------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509 T C + I N +++ ++ + NP++L++DEP LD A L Sbjct: 191 -LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249 Query: 510 KQFKENKKTIVIISHDPT--IISMSDFSLIFHPIQGSLFG-LTQDIFKFNTV 558 + KTIV H P+ + M D L+ + FG + + F +V Sbjct: 250 GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 44.1 bits (104), Expect = 1e-04 Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 34/163 (20%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 L F + G ++ G +G GK+ L + GLL +E G I + +R +F + Y Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRF---MAY 86 Query: 411 LSQHCSLFP-ISITENIILSHDQNSLH--IAQKTA----KIVGC--HEDIL--SLKNGYQ 459 L L +S EN+ H LH A++ IVG +ED L L G Sbjct: 87 LGHLPGLKADLSTLENL---HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAG-- 141 Query: 460 TTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNE 500 QK RL+ R+ + + L+DEP +LD E Sbjct: 142 -------------QKKRLALARLWLSPAPLWLLDEPYANLDLE 171 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 43.4 bits (103), Expect = 2e-04 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 14/99 (14%) Query: 436 HIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLY 495 I K + I++L G Q QK L R ++ + ++L+DEP Sbjct: 379 FIRSLNIKTPSREQLIMNLSGGNQ-------------QKAILGRWLSEDMKVILLDEPTR 425 Query: 496 HLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSD 533 +D AK+ Y ++ + ++ +S D P ++ ++D Sbjct: 426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD 464 Score = 29.1 bits (66), Expect = 3.3 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407 ++SF G + G +G GKS L + G + G+I +++ +A Sbjct: 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 Query: 408 IGYLSQHCSLFP-ISITENIILSH 430 + + Q L P +++ EN+ L Sbjct: 81 VAIIYQELHLVPEMTVAENLYLGQ 104 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 43.2 bits (102), Expect = 2e-04 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 29/224 (12%) Query: 329 NTITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 N I KN+ F+ + + ++SF + +G I G +G GKS + + GLL E G Sbjct: 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT---------ENIILSHDQNSLHIA 438 I ++ + + +IG + Q+ + T EN + H++ + Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERV- 121 Query: 439 QKTAKIVGCHE----DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494 + ++VG + + L G + Q++ ++ +A P I+++DE Sbjct: 122 NEALELVGMQDFKEREPARLSGGQK-------------QRVAIAGAVAMRPKIIILDEAT 168 Query: 495 YHLDNEAKNNFYTLLKQFKE-NKKTIVIISHDPTIISMSDFSLI 537 LD E + +K ++ + T++ I+HD +++SD L+ Sbjct: 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLV 212 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 42.4 bits (100), Expect = 3e-04 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 30/206 (14%) Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR--- 394 K + + N+S ++ G + G SGCGKS ++GL + +G +S+ Sbjct: 18 LSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77 Query: 395 QISRDFIEKFSAQIGYLSQHC--SLFPISITENII---LSH-----DQNSLHIAQKTAKI 444 +++R + F I + Q ++ P II L H L A + + Sbjct: 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRA 137 Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNE 500 V + +L D+ P + +Q++ L+R +A P +L++DE + +LD Sbjct: 138 VDLDDSVL------------DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 Query: 501 AKNNFYTLLKQFKENKKT-IVIISHD 525 + LLK+ ++ T + I+HD Sbjct: 186 LQAGVIRLLKKLQQQFGTACLFITHD 211 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 42.3 bits (99), Expect = 4e-04 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 28/206 (13%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + KN+V + + R L+ T E G +G GK+ L + GLL GT+ Sbjct: 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLF-PISITENIIL-------SHDQNSLHIAQKTA 442 G + I + ++ +G QH LF +++ E+I+ S ++ L + + Sbjct: 989 VGGKDIETN-LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEM-EAML 1046 Query: 443 KIVGCH----EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498 + G H E+ L G Q +K+ ++ + ++++DEP +D Sbjct: 1047 EDTGLHHKRNEEAQDLSGGMQ-------------RKLSVAIAFVGDAKVVVLDEPTSGVD 1093 Query: 499 NEAKNNFYTLLKQFKENKKTIVIISH 524 ++ + + LL +++ +TI++ +H Sbjct: 1094 PYSRRSIWDLLLKYRSG-RTIIMSTH 1118 Score = 28.8 bits (64), Expect = 3.5 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 469 YNIVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 Y+ K +LS IA P ++L+DEP +D +A+ + + + +V+ SH Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 42.2 bits (100), Expect = 4e-04 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 40/200 (20%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407 +LS + G +I GP+G GK+ + + G ++G++ FG ++ E A+ Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG-LPEHQIARA 77 Query: 408 -IGYLSQHCSLFP-ISITENIILSHDQN-----SLH---------IAQKTAKIVGCHE-- 449 IG Q ++F +++ EN+ L+ ++ SL ++ + +G + Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA 137 Query: 450 DIL--SLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNF 505 D L L +G QK L ++ +P +LL+DEP+ + +E Sbjct: 138 DRLAGLLSHG---------------QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKT 182 Query: 506 YTLLKQFKENKKTIVIISHD 525 LLK K ++V++ HD Sbjct: 183 AELLKSLAG-KHSVVVVEHD 201 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 42.1 bits (99), Expect = 4e-04 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 35/190 (18%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 +SF +G GP+G GKS + + G L + G++ + ++ E IGY Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGY 79 Query: 411 LSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGC----------HEDILSLKNGYQ 459 L +H L+ + + E + + ++ H+ I L GY+ Sbjct: 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYR 139 Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519 Q++ L++ + ++P +L++DEP LD Q E + I Sbjct: 140 -------------QRVGLAQALIHDPKVLILDEPTTGLDP----------NQLVEIRNVI 176 Query: 520 VIISHDPTII 529 I D TII Sbjct: 177 KNIGKDKTII 186 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 40.9 bits (97), Expect = 8e-04 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 26/190 (13%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCML-GLLTLEKGTISFGDRQISRDFIEK 403 R++ LSFT+ G I GP+G GK++ LL +L GL + G + + I R ++ Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTS-LLRILAGLARPDAGEVLWQGEPIRRQR-DE 71 Query: 404 FSAQIGYLSQHCSLFP-ISITENII----LSHDQNSLHIAQKTAKIVGCH--EDIL--SL 454 + + YL + ++ EN+ L + + + A+ VG ED+ L Sbjct: 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ-VGLAGFEDVPVRQL 130 Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 G Q +++ L+R+ + ++DEP +D + LL Q E Sbjct: 131 SAGQQ-------------RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 Query: 515 NKKTIVIISH 524 +++ +H Sbjct: 178 QGGMVILTTH 187 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 40.7 bits (95), Expect = 0.001 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 21/197 (10%) Query: 331 ITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT-LEKGT 388 I+ KN F D KTS+ +++ IP GS I G +G GK++ + MLG L+ E + Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCH 448 + + Y+ Q +F ++ ENI+ D S + H Sbjct: 675 VV-------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQH 721 Query: 449 EDILSLKNGYQTTYCSDE---IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE-AKNN 504 + L L G T + I Q++ ++R + +N I + D+PL LD A Sbjct: 722 D--LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779 Query: 505 FYTLLKQFKENKKTIVI 521 F + +K + K +++ Sbjct: 780 FDSCMKDELKGKTRVLV 796 Score = 39.6 bits (92), Expect = 0.002 Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 16/260 (6%) Query: 271 TSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNT 330 T IT L Q ++ SLN S++ + N D + + P+S S + Sbjct: 1179 TLNITTLLSGVLRQASKAENSLN----SVERVGNYIDLPSEATAIIENNRPVSGWPSRGS 1234 Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +++ R + + LSF + + G +G GKS+ L + ++ LEKG I Sbjct: 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM 1294 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI--ILSHDQNSLHIAQKTAKIVGCH 448 D +++ + + + Q LF ++ NI H+ L A + A I Sbjct: 1295 IDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI---- 1350 Query: 449 EDILSLKN-GYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 +D++ G +++ Q+ + L+R + IL++DE +D + Sbjct: 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 Query: 506 Y-TLLKQFKENKKTIVIISH 524 T+ ++FK T+++I+H Sbjct: 1411 QRTIREEFKSC--TMLVIAH 1428 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 40.5 bits (95), Expect = 0.001 Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 17/205 (8%) Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RD 399 KK R+I N+ + G+ + G SG GK+ L + +T G I+ GDR ++ R Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--GVITGGDRLVNGRP 829 Query: 400 FIEKFSAQIGYLSQH-CSLFPISITENIILS---HDQNSLHIAQK---TAKIVGCHEDIL 452 F IGY+ Q L ++ E++ S S+ ++K +++ +L Sbjct: 830 LDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVI----KLL 885 Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLS---RIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509 +++ N+ Q+ RL+ ++A +L +DEP LD++ + L+ Sbjct: 886 EMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945 Query: 510 KQFKENKKTIVIISHDPTIISMSDF 534 ++ ++ + I+ H P+ I +F Sbjct: 946 RKLADHGQAILCTIHQPSAILFEEF 970 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 40.1 bits (94), Expect = 0.001 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 19/223 (8%) Query: 326 LSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE 385 L + I N+ F + L+ QN++ ++P + G +G GKS ++G L Sbjct: 336 LQSGRIDIDNVSFA-YRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT 394 Query: 386 KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLF---PI----SITENIILSHDQNSLHIA 438 +G I R +S S + L Q ++ P+ + N+ L D + + Sbjct: 395 EGEIRLDGRPLSS-----LSHSV--LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447 Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYH 496 Q V E SL +G T ++ QK + L+R++ P IL++DE + Sbjct: 448 QALET-VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506 Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFH 539 +D+ + L +E T+V+I+H + I +D L+ H Sbjct: 507 IDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLH 548 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 39.8 bits (93), Expect = 0.002 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 37/196 (18%) Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR-------QISR 398 L+ +NL+F I S + GP+G GKS L + G L GT+ + Q Sbjct: 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV 582 Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458 D ++ S + Y+ C FP + E + +H S + A + + +L G Sbjct: 583 DGLDLSSNPLLYMM-RC--FP-GVPEQKLRAH-LGSFGVTGNLAL-----QPMYTLSGG- 631 Query: 459 QTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 QK R++ +I P ILL+DEP HLD +A L F+ Sbjct: 632 --------------QKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGG- 676 Query: 517 KTIVIISHDPTIISMS 532 ++++SHD +IS S Sbjct: 677 --VLMVSHDEHLISGS 690 Score = 34.1 bits (78), Expect = 0.092 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 +I L+R + P +LL+DEP HLD A T L ++ KT +++SH Sbjct: 352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSH 399 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 39.3 bits (92), Expect = 0.002 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISM 531 QK+ + R + P IL++DEP +D AK Y L+ + + K I+IIS + P ++ + Sbjct: 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI 457 Query: 532 SD 533 +D Sbjct: 458 TD 459 Score = 35.1 bits (81), Expect = 0.051 Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 Q I +++ + N I++MDEP L + N+ +T++++ KE IV ISH Sbjct: 141 QMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192 Score = 27.4 bits (61), Expect = 9.4 Identities = 14/47 (29%), Positives = 25/47 (53%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI 396 N++ + S + G +G GKS L C+ G+ + G+I F ++I Sbjct: 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 39.1 bits (92), Expect = 0.003 Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR 394 R C+++SF + G I G SG GK+ L + L + G + + R Sbjct: 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 39.4 bits (92), Expect = 0.003 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 468 PYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TIVII 522 PY + QK+ ++ +AN P +L+ DEP ++ + + LL + +N TI++I Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215 Query: 523 SHDPTIIS 530 SHD ++S Sbjct: 216 SHDLQMLS 223 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 38.6 bits (90), Expect = 0.004 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL-LTLE 385 S+ T +N+ FR R + LS T P G + G +G GKS LL MLG Sbjct: 8 SDTTFALRNVSFR--VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKST-LLKMLGRHQPPS 64 Query: 386 KGTISFGDRQISRDFIEKFSAQIGYLSQ 413 +G I + + + F+ ++ YL Q Sbjct: 65 EGEILLDAQPLESWSSKAFARKVAYLPQ 92 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 38.2 bits (89), Expect = 0.005 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 33/182 (18%) Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIE---KFSAQ-IGYLSQHCSLFP- 419 G SG GKS L + GL G +S + + + E K A+ +G++ Q L P Sbjct: 43 GESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 Query: 420 ISITENIIL------SHDQNSLHIAQKTAKIVGCHEDIL----SLKNGYQTTYCSDEIPY 469 ++ EN+ L + S + A+ + +G + + L G Q Sbjct: 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ---------- 152 Query: 470 NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK---TIVIISHDP 526 Q++ L+R P +L DEP +LD + + LL F N++ T+++++HD Sbjct: 153 ---QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FSLNREHGTTLILVTHDL 207 Query: 527 TI 528 + Sbjct: 208 QL 209 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 38.2 bits (89), Expect = 0.006 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 22/155 (14%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 +++S ++P G ++ G +G GKS L +L + +G + + +R I+ Sbjct: 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA----------- 724 Query: 409 GYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE---DILSLKNGYQTTYCSD 465 Y+ Q + ++ NI+ +++ A + A V + D+ L G +T Sbjct: 725 -YVPQQAWIMNATVRGNILFFDEED----AARLADAVRVSQLEADLAQLGGGLETEIGEK 779 Query: 466 EIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLD 498 + + QK R+S R + N + L+D+PL LD Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 Score = 29.0 bits (65), Expect = 3.4 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Query: 330 TITAKNIVFRD-----KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL 384 + A ++VF ++ L+ + +SF I I G +G GKS LL + ++ + Sbjct: 1303 PVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV 1362 Query: 385 EKGTI--------SFGDRQISRDF 400 G I ++G R++ R F Sbjct: 1363 CGGEIRVNGREIGAYGLRELRRQF 1386 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 37.3 bits (87), Expect = 0.011 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 27/162 (16%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--RDFI 401 R + L IP G + G SGCGKS L + GL T G + G ++ R+ Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEARE-- 81 Query: 402 EKFSAQIGYLSQHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVG----CHEDILSLKN 456 + Q L P + +N+ L A + VG +E +L Sbjct: 82 -----DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSG 136 Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498 G + Q++ L+R + + P +LL+DEPL LD Sbjct: 137 GQK-------------QRVALARALIHRPGLLLLDEPLGALD 165 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 37.3 bits (86), Expect = 0.011 Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 15/175 (8%) Query: 363 IAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSAQIGYLSQ--HCSLF 418 + G +GCGKS + + GLL +KG + + + + S+ + Q+ + Q +F Sbjct: 32 LVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 Query: 419 PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG----YQTTYCSDEIPYNIVQK 474 I +I S +L + + A+I ++ L+L + +Q C + + ++ Sbjct: 92 YTDIDSDIAFS--LRNLGVPE--AEITRRVDEALTLVDAQHFRHQPIQC---LSHGQKKR 144 Query: 475 IRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 + ++ + LL+DEP LD + ++++ ++I SHD +I Sbjct: 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI 199 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 37.0 bits (86), Expect = 0.013 Identities = 15/42 (35%), Positives = 26/42 (61%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 ++LSF +P G+ +I GP+GCGKS+ + L + G ++ Sbjct: 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT 510 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 36.2 bits (84), Expect = 0.025 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Query: 327 SNNTITAKNIVFR----DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382 N I KN+ ++ ++ T +L +++ + +G +I G +G GKS M LL Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60 Query: 383 TLEKGTI 389 +G + Sbjct: 61 IPSEGKV 67 Score = 29.7 bits (67), Expect = 1.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE-NKK---TIVIISH 524 Q++ ++ I+A P ++ DEP LD + ++ KE NKK TI++I+H Sbjct: 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRRE---VVNTIKELNKKYGITIILITH 203 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 35.1 bits (81), Expect = 0.042 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 37/190 (19%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 R+I ++ + GS + G +G GKS + + G L G I Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK----------- 373 Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSL-HIAQKTAKIVGCHEDILSLKN-----GY 458 ++GY +QH F L D++ L H+A+ + E L++ G+ Sbjct: 374 GIKLGYFAQHQLEF---------LRADESPLQHLARLAPQ-----ELEQKLRDYLGGFGF 419 Query: 459 QTTYCSDEIP-YNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 Q ++E ++ +K RL + I+ P +LL+DEP HLD + + L F Sbjct: 420 QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--- 476 Query: 516 KKTIVIISHD 525 + +V++SHD Sbjct: 477 EGALVVVSHD 486 Score = 33.2 bits (76), Expect = 0.17 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 14/68 (20%) Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF-----SLIFHPI 541 +LL+DEP HLD +A L K K + T+++ISHD DF I H Sbjct: 170 LLLLDEPTNHLDLDA---VIWLEKWLKSYQGTLILISHD------RDFLDPIVDKIIHIE 220 Query: 542 QGSLFGLT 549 Q SLF T Sbjct: 221 QQSLFEYT 228 Score = 32.4 bits (74), Expect = 0.29 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 336 IVFRD---KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 IVF ++ R++ N + TI G + G +GCGKS L + ++ + G+ +F Sbjct: 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 34.6 bits (80), Expect = 0.070 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 20/180 (11%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG-- 409 S T+ G G +G GKS + G L L G I+R E+ + Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 Query: 410 -------YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 LS + E I + ++ A+ G +L + Y +T Sbjct: 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPAR--CEQLAQQFGI-TALLDRRFKYLSTG 139 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522 + +K L + + + P +L++DEP LD ++ LL ++ T+V++ Sbjct: 140 ET--------RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191 Score = 33.8 bits (78), Expect = 0.11 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 31/173 (17%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG--------LLTLEKGTISFGDRQI 396 R I NLS+ + G I GP+G GKS L + G LTL FG R+ Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL------FGRRRG 326 Query: 397 SRDFIEKFSAQIGYLSQHCSL-FPISIT-ENIILSHDQNSLHIAQKTA----KIVGCHED 450 S + I IGY+S L + +S + N+ILS +S+ I Q + K+ D Sbjct: 327 SGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLD 386 Query: 451 ILSLKNGYQTTYCSDEIPYNIV----QKIRL-SRIIANNPAILLMDEPLYHLD 498 IL + P++ + Q++ L R + +P +L++DEPL LD Sbjct: 387 ILGIDKRTADA------PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 34.5 bits (79), Expect = 0.078 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 23/186 (12%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 +LS T + I G +GCGKS+ L + G++ G I + + I+ I K Sbjct: 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN--IAK--PYCT 73 Query: 410 YLSQHCSL-FPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468 Y+ + L +++ EN+ ++I E + + + ++ DE Sbjct: 74 YIGHNLGLKLEMTVFENLKF------------WSEIYNSAETLYAAIHYFKLHDLLDEKC 121 Query: 469 YN----IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII-S 523 Y+ + + + ++R+IA + L+DE +L E ++ L+ K N IV++ S Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV-MKANSGGIVLLSS 180 Query: 524 HDPTII 529 H + I Sbjct: 181 HLESSI 186 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 34.0 bits (78), Expect = 0.092 Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 37/219 (16%) Query: 337 VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT---LEKGTISFGD 393 V R R I ++LS I G + G +G GKS L + G LT +G GD Sbjct: 9 VARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD 65 Query: 394 --------RQISRDFIEKFSAQIGYLSQHCSLFPISITENIILS---HDQNSLHIAQKTA 442 I + + A + +Q F S E ++L H + + + + Sbjct: 66 VTLNGEPLAAIDAPRLARLRAVLPQAAQPA--FAFSAREIVLLGRYPHARRAGALTHRDG 123 Query: 443 KIVGC---HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIAN---------NPAILLM 490 +I +L TT E+ +++ +R++A P LL+ Sbjct: 124 EIAWQALALAGATALVGRDVTTLSGGEL-----ARVQFARVLAQLWPPHDAAQPPRYLLL 178 Query: 491 DEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTI 528 DEP LD ++ +++ ++ ++ I HDP + Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 33.9 bits (77), Expect = 0.11 Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 56/178 (31%) Query: 358 GSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSL 417 G +I GP G GK+ + L G + + D Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID------------------------ 37 Query: 418 FPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL 477 E+I+ L I K G E ++ L Sbjct: 38 -----GEDILEEVLDQLLLIIVGGKKASGSGELR---------------------LRLAL 71 Query: 478 SRIIANNPAILLMDEPLYHLDNE------AKNNFYTLLKQFKENKKTIVIISHDPTII 529 + P +L++DE LD E LL E T+++ ++D + Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 33.7 bits (78), Expect = 0.13 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Query: 354 TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA-----QI 408 T+P I G SG GK++ + + GL +KG I R + D + +I Sbjct: 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF-DAEKGICLPPEKRRI 78 Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467 GY+ Q LFP + N+ ++ + KIV I L + Y + E Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSM---VAQFDKIVALL-GIEPLLDRYPGSLSGGE- 133 Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498 Q++ + R + P +LLMDEPL LD Sbjct: 134 ----KQRVAIGRALLTAPELLLMDEPLASLD 160 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 33.7 bits (77), Expect = 0.14 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 G E I SL G +T ++ +++ + N+ ++L+MDEP LD + + N Sbjct: 794 GMVEGIDSLSGGEKTAVA-------FALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNL 846 Query: 506 YTLLKQFKENKKTI---VIISHDPTIISMSDFSLIFHPIQGS 544 +++ ++ I ++ISH ++S++D + GS Sbjct: 847 KDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKSSGS 888 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 33.0 bits (76), Expect = 0.19 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 21/208 (10%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 ++ TI G + G +G GKS + + GL + G I + ++ + E + Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 Query: 411 LSQHCSLFPISITENIILSHD---QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467 + LF + ++ + L + K L L++G + + Sbjct: 402 VFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHK--------LELEDGRISN-----L 448 Query: 468 PYNIVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENKKTIVIISH 524 + QK RL+ ++A ILL+DE D + FY LL +E KTI ISH Sbjct: 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508 Query: 525 DPTIISMSDFSLIFHPIQGSLFGLTQDI 552 D +D L G L LT + Sbjct: 509 DDHYFIHADRLLEMR--NGQLSELTGEE 534 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 32.9 bits (75), Expect = 0.20 Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF 534 P + L+DE LDN+ K+ L+ +++ I HDP ++ +D+ Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADY 1770 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 32.7 bits (75), Expect = 0.23 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382 I +NI + ++ + +S T+ G + G SG GKS LG+L Sbjct: 1 MPQQIELRNIAL---QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 32.8 bits (75), Expect = 0.25 Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 + + EG + G SGCGKS F ++GL+ G +++ Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80 Score = 29.3 bits (66), Expect = 2.5 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIIS- 530 Q+I ++R + P +++ DEP+ LD + LL+Q +E +++ I+HD ++ Sbjct: 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKH 227 Query: 531 MSDFSLI 537 +SD L+ Sbjct: 228 ISDRVLV 234 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 32.1 bits (74), Expect = 0.38 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIISM-SDFSLIF 538 + L+DEP HLD E + +++ +E + T +++ HD +I SD ++F Sbjct: 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 32.1 bits (73), Expect = 0.41 Identities = 19/52 (36%), Positives = 26/52 (50%) Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 K+ S I NP IL++DE L D + +FKE KTI +SH+ Sbjct: 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 31.9 bits (72), Expect = 0.42 Identities = 20/81 (24%), Positives = 38/81 (46%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMS 532 Q + L+ I+ P L+ DE LD ++ +K+ E KTIV I+H+ + + Sbjct: 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDA 202 Query: 533 DFSLIFHPIQGSLFGLTQDIF 553 D ++ + L G +++ Sbjct: 203 DRIIVMDRGKIVLEGEPENVL 223 Score = 28.8 bits (64), Expect = 3.6 Identities = 15/41 (36%), Positives = 23/41 (56%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 +N++ I +G I G +G GKS L + GLL +KG + Sbjct: 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59 >gnl|CDD|177488 PHA02774, PHA02774, E1; Provisional. Length = 613 Score = 31.4 bits (72), Expect = 0.65 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT-ISF 391 IP+ +C +I GP GKS F CM L+ KG ISF Sbjct: 431 IPKKNCLVIYGPPDTGKSMF--CM-SLIKFLKGKVISF 465 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 31.2 bits (71), Expect = 0.74 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFK-ENKKTIVIISHDPTIIS-MSDFSLIFHPIQ 542 P +L+ DEP LD + TLL + K E I++I+HD +++ + D L+ + + Sbjct: 180 PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 Query: 543 GSLFGLTQDIF 553 +G +D+F Sbjct: 240 TMEYGNARDVF 250 Score = 29.7 bits (67), Expect = 2.3 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT---LEKGTISFGDRQI 396 +L+F++ G I G SG GKS ++GLL G+ +F R+I Sbjct: 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREI 83 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 31.1 bits (71), Expect = 0.88 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 36/210 (17%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 N++ + E + GP+G GK+ C+ G GTI + I + A++G Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI-ARMG 81 Query: 410 YLS--QHCSLF-PISITENIILS-HDQ---NSLHIAQKTA-----------------KIV 445 + QH LF +++ EN++++ H Q KT + V Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141 Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 G +L N + Y +++ ++R + P IL++DEP L+ + Sbjct: 142 G----LLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192 Query: 506 YTLLKQFK-ENKKTIVIISHD-PTIISMSD 533 L+ + + E+ T+++I HD ++ +SD Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLVMGISD 222 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 31.0 bits (70), Expect = 0.88 Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTI 528 NP+I+ MDEP LD A ++ + +T+V H P+I Sbjct: 1037 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 30.3 bits (69), Expect = 1.3 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQIS 397 I + ++ T+ +G I GP+G GKS + G + E GTI F + + Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 30.1 bits (68), Expect = 1.4 Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382 F D+ +S+++ +G I G SG GKS L ++GL+ Sbjct: 13 FGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 >gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. Length = 224 Score = 30.1 bits (68), Expect = 1.5 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 40/174 (22%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCML--GLLTLEKGT-ISFGDR--QISRDFIEKFSAQIG 409 PEG ++ G G GK+ F L L GL EK IS +R +I K Sbjct: 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLED 72 Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469 Y+ + SL+I + + +KN E+P Sbjct: 73 YIDK--------------------SLYIVRLDPSDFKTSLN--RIKN---------ELP- 100 Query: 470 NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 +++++ SR++ + ++L E L+ D E + + +E T ++ S Sbjct: 101 ILIKELGASRVVIDPISLL---ETLFDDDAERRTELFRFYSSLRETGVTTILTS 151 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 30.1 bits (68), Expect = 1.7 Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 22/204 (10%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 + LSFT+ EG I G +G GKS + G++ G + D + S +I Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89 Query: 409 GYLSQHCS-----------LFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG 457 + Q S + + N L +Q I + T + VG D Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIE-TLRQVGLLPD------- 141 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517 +Y + Q++ L+R + P +++ DE L LD ++ L+ + +E + Sbjct: 142 -HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200 Query: 518 T--IVIISHDPTIISMSDFSLIFH 539 I + H + +SD L+ H Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMH 224 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 29.6 bits (67), Expect = 2.0 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%) Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPT---------IISM 531 + +P +L DEP LD+ + +LK + KTI+ H P+ II M Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 Query: 532 SDFSLIFH 539 ++ + + Sbjct: 241 AEGRVAYL 248 >gnl|CDD|179788 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional. Length = 601 Score = 29.8 bits (68), Expect = 2.1 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%) Query: 351 LSFTIPEGSCCIIAG--PSGCGKSNFLLCMLG 380 L T PEG A PS CGK+N ML Sbjct: 247 LGVTSPEGRKTYFAAAFPSACGKTNL--AMLI 276 >gnl|CDD|183088 PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional. Length = 459 Score = 29.3 bits (65), Expect = 2.5 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 305 LNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIA 364 +ND+ + NS S P+S S A N +F + T I + L+ I+ Sbjct: 145 INDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKRLTIK----KNIILQ 200 Query: 365 GPSGCGKSNFLLCMLGLLTLEKG-----TISFGDRQISRDFIEKF 404 GP G GK+ + LLT EK + F DFI+ + Sbjct: 201 GPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 29.2 bits (66), Expect = 2.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKS 372 +N++ +IP G I G SG GKS Sbjct: 624 KNITVSIPLGLFTCITGVSGSGKS 647 Score = 27.7 bits (62), Expect = 9.4 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 Q+I+L++ + + + ++DEP L + +L++ + T+V+I H+ +I Sbjct: 835 QRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVI 894 Query: 530 SMSDF 534 +D+ Sbjct: 895 KTADY 899 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 29.3 bits (66), Expect = 2.6 Identities = 9/11 (81%), Positives = 10/11 (90%) Query: 363 IAGPSGCGKSN 373 I GP+GCGKSN Sbjct: 28 IVGPNGCGKSN 38 >gnl|CDD|162097 TIGR00898, 2A0119, cation transport protein. Length = 505 Score = 29.2 bits (66), Expect = 2.9 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 55 LIALSTITLFLYALFFGFDLIRS-RLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSII 113 L ++ FL+ L F + S R LI IE K + + K ++G L + + Sbjct: 245 LQLAVSLPTFLFFLLSWF-VPESPRWLISQGR-IEEALK-ILQRIAK---INGKKLPAEV 298 Query: 114 SSLDQLKQFITSPVLPALLDILFTPIFIILSFC 146 SL K +S + LD+ TP + C Sbjct: 299 LSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLC 331 >gnl|CDD|182970 PRK11111, PRK11111, hypothetical protein; Provisional. Length = 214 Score = 29.1 bits (66), Expect = 2.9 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 16 SFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQS-----KINLIA-LSTITLFLYALF 69 + F +I FFI + L NP+ ++ ++ S+ Q+ K NL A LS + L +LF Sbjct: 3 TLFDFSIYIKFFIGLFALVNPVGILPVFISMTSHQTAAERNKTNLTANLSVAIILLISLF 62 Query: 70 FG 71 G Sbjct: 63 LG 64 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 28.8 bits (65), Expect = 3.5 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLG-LLTL 384 SFT+ G + G SGCGKS L LLT+ Sbjct: 35 SFTLERGKTLAVVGESGCGKST-----LARLLTM 63 Score = 28.4 bits (64), Expect = 4.6 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAK----NNFYTLLKQFKENKKTIVIISHD 525 Q+I ++R + +P +++ DEP+ LD + N L ++ + V ISHD Sbjct: 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL---GLSYVFISHD 214 >gnl|CDD|130320 TIGR01253, thiP, thiamine ABC transporter, permease protein. The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Length = 519 Score = 28.3 bits (63), Expect = 6.1 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 30/162 (18%) Query: 59 STITLFLY-ALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEM---DGTSLFSIIS 114 +TI L +Y A+ F FDL ++ L L++ + +++++ +G SL + Sbjct: 217 TTIELAIYQAILFDFDLAKAALFA----LLQFVCCLGLFLLSQRFSKAIANGLSLLNGWF 272 Query: 115 SLD---QLKQFITSPVLPALLDILFTPIFIIL----------SFCIHPILG-------SW 154 D K +L AL LF P+ I+ +P L Sbjct: 273 DPDDKLASKICDILLILLALF-FLFPPLLAIIIDALNSRNLLEVLANPQLWQALGTSLRI 331 Query: 155 AILSGILLLTITILFQANNERLE-RRYKKSRQDEINFGKAIL 195 A+ + +L LT+ I + LE K+ Q G IL Sbjct: 332 ALAAALLALTLAIALLLLSRELEALHKMKAGQFIEMAGMLIL 373 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 28.1 bits (63), Expect = 6.3 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%) Query: 362 IIAGPSGCGKSNF---LLCMLGLLT 383 +I+GP+G GKSN +L LGL + Sbjct: 27 VISGPNGSGKSNIGDAILFALGLSS 51 >gnl|CDD|183944 PRK13280, PRK13280, N-glycosylase/DNA lyase; Provisional. Length = 269 Score = 28.1 bits (63), Expect = 7.0 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 468 PYN---IVQKI-RLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF--KENKKTIV 520 N + QKI R+ ++ ++ L+D PLY+ D E L K K+ KT+V Sbjct: 97 KGNRRLLEQKIKRIEKVEPFLESLTLLDLPLYYEDLEELLEQ--LAKILGAKKESKTVV 153 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 27.7 bits (62), Expect = 8.5 Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 LS +A N +L++DEP LD E + +++++ ++I+SHD Sbjct: 805 LSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHD 853 >gnl|CDD|162811 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 Score = 27.4 bits (61), Expect = 9.3 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 11/64 (17%) Query: 476 RLSRIIANNPAILLMDEPLYHLDNEAKNN--------FYTLLKQFKENKKTIV--IISHD 525 ++ R I NP I+L+D PL + E++ N + +L+ +E + + II+ Sbjct: 224 KMRRYI-ENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVK 282 Query: 526 PTII 529 P ++ Sbjct: 283 PDLV 286 >gnl|CDD|180381 PRK06067, PRK06067, flagellar accessory protein FlaH; Validated. Length = 234 Score = 27.2 bits (61), Expect = 10.0 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 18/80 (22%) Query: 355 IPEGSCCIIAGPSGCGKSNFL-LCMLGLL---------TLEKGTISF--GDRQISRDFIE 402 IP S +I G G GKS + G L T E + S+ + D + Sbjct: 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81 Query: 403 KFSAQIGYLSQHCSLFPISI 422 F GYL +FP++ Sbjct: 82 FFL--WGYL----RIFPLNT 95 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.139 0.403 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,926,003 Number of extensions: 583509 Number of successful extensions: 2368 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2181 Number of HSP's successfully gapped: 373 Length of query: 565 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 467 Effective length of database: 3,876,889 Effective search space: 1810507163 Effective search space used: 1810507163 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 60 (27.0 bits)