RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764467|ref|YP_003064798.2| Type I secretion system
ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62]
         (565 letters)



>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
           transporter, PrtD family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 544

 Score =  294 bits (754), Expect = 4e-80
 Identities = 146/542 (26%), Positives = 252/542 (46%), Gaps = 12/542 (2%)

Query: 18  FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRS 77
           F I  L SF INIL L  PLYM+ +YD V+ + S   L+ L+ + L LY      D +RS
Sbjct: 8   FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRS 67

Query: 78  RLLIESSHLIERFFKPYIITVTKKY---EMDGTSLFSIISSLDQLKQFITSPVLPALLDI 134
            +L+     ++      I   +            L   +  LDQL+QF+T P L A  D 
Sbjct: 68  FVLVRIGEKLDGALNQPIFAASFSATLRRGKIDGL-QALRDLDQLRQFLTGPGLFAFFDA 126

Query: 135 LFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFGKAI 194
            + PI++++ F +HP +G  A+   ++L+ + +L     ++  +   ++     N   + 
Sbjct: 127 PWMPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSA 186

Query: 195 LHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIG 254
           L N+E I A      L   W +  +     QS  + +     +++K  R+ LQS +LG+G
Sbjct: 187 LRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246

Query: 255 AWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNS 314
           A+L I  +++ G +IA SI+  RA+AP++  I   K  +   ++ K L        LL +
Sbjct: 247 AYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRL------NELLAN 300

Query: 315 SDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
             S+   + +      ++ +N+        +   + +SF +  G    I GPSG GKS  
Sbjct: 301 YPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTL 360

Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNS 434
              ++G+     G++      + +   E F   IGYL Q   LFP ++ ENI    +   
Sbjct: 361 ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENAD 420

Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDE 492
                + AK+ G HE IL L +GY T         +  Q+  I L+R +  +P ++++DE
Sbjct: 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480

Query: 493 PLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDI 552
           P  +LD E +      +K  K    T+V+I+H P+++   D  L+    + + FG   ++
Sbjct: 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540

Query: 553 FK 554
             
Sbjct: 541 LA 542


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score =  161 bits (411), Expect = 3e-40
 Identities = 125/556 (22%), Positives = 227/556 (40%), Gaps = 85/556 (15%)

Query: 22  ILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALF-FGFDLIRSRL- 79
           ++ S  IN+L L +PL++M++YD V+  Q+   L  L+ I + L  +F F    +RS   
Sbjct: 153 LIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLA-IGVALAIVFDFVLKTLRSYFL 211

Query: 80  --------LIESSHLIERFFKPYIITVTKKYEMDGT-SLFSIISSLDQLKQFITSPVLPA 130
                   LI S+ L ER     ++ +  +       S  + +   + ++ F TS  L A
Sbjct: 212 DVAGKKADLILSAKLFER-----VLGLRMEARPASVGSFANQLREFESVRDFFTSATLTA 266

Query: 131 LLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILF----QANNERL-ERRYKKSRQ 185
           L+D+ F  +F+++      I+G   +   ++ + + +L     Q    RL E   ++S Q
Sbjct: 267 LIDLPFALLFLLVIA----IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQ 322

Query: 186 DEINFGKAILHNS----EYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKT 241
                  A+L  S    E I A +        W +  A        +  ++   ++    
Sbjct: 323 RN-----AVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG--LKSRFLSNLATNFA 375

Query: 242 LRMTLQSSILGI--GAWLVIHQKLSAGAIIATSIITARAMAPLEQII-------NSKKSL 292
             +    S+  +  G +L+   +L+ G +IA  +++ RA+APL Q+         +K +L
Sbjct: 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTAL 435

Query: 293 NVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLS 352
                      +L++   L          +        I  +N+ F           N+S
Sbjct: 436 Q----------SLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVS 485

Query: 353 FTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDFIEKFSAQIG 409
            TI  G    I G  G GKS  L  +LGL    +G++       RQI    +      IG
Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL---RRNIG 542

Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469
           Y+ Q   LF  ++ +NI L           + A++ G  E +    +G            
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDM--------- 593

Query: 470 NIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
             +            Q + L+R +  +P ILL+DEP   +DN ++  F   LK++    K
Sbjct: 594 -QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GK 651

Query: 518 TIVIISHDPTIISMSD 533
           T+V+++H  +++ + D
Sbjct: 652 TLVLVTHRTSLLDLVD 667


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score =  132 bits (333), Expect = 3e-31
 Identities = 124/544 (22%), Positives = 232/544 (42%), Gaps = 48/544 (8%)

Query: 6   YSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQ--SKINLIALSTITL 63
           +    ++ Y   F   +L S  + +  L  PL    + D V+  +  S ++++AL+ + +
Sbjct: 130 FIPAIIR-YRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAV 188

Query: 64  FLYALFFGFDLIRSRLLIESSHLIE-----RFFKPYI---ITVTKKYEMDGTSLFSIISS 115
            ++    G   +R+ L    +  I+     R ++  +   +   +   +  T   + +  
Sbjct: 189 AIFEPALG--GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT--VARVRE 244

Query: 116 LDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQAN--N 173
           L+Q++ F+T   L  +LD+LF  +F+ + F   P L +  ++  ++   +  +F      
Sbjct: 245 LEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL-TGVVIGSLVCYALLSVFVGPILR 303

Query: 174 ERLERRYKKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRA----TSQEYQSL-- 227
           +R+E ++++S        +++    E I A +T       W+++ A     S    +L  
Sbjct: 304 KRVEDKFERSAAATSFLVESV-TGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362

Query: 228 IAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAP---LEQ 284
           IA +    I + + L   +   +L  GA LVI   LS G ++A +++  R   P   L Q
Sbjct: 363 IAGQ---AIELIQKLTFAI---LLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQ 416

Query: 285 IINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTS 344
           +    +   + L+ L  ++N    +     S       ++      IT +NI FR    S
Sbjct: 417 LWQDFQQTGIALERLGDILN----SPTEPRSAGL---AALPELRGAITFENIRFRYAPDS 469

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
             +  NL+  I  G    I GPSG GKS     +  L T + G +      ++       
Sbjct: 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529

Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
             Q+G + Q   LF  SI +NI L +           AK+ G H+ I  L  GY T    
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV-- 587

Query: 465 DEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520
            E   N+     Q+I ++R +  NP IL+ DE    LD E++      +++     +T++
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG-RTVI 646

Query: 521 IISH 524
           II+H
Sbjct: 647 IIAH 650


>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
           Unfortunately, the gene symbol nomenclature adopted
           based on this operon in B. subtilis assigns cydC to the
           third gene in the operon where this gene is actually
           homologous to the E. coli cydD gene. We have chosen to
           name all homologs in this family in accordance with the
           precedence of publication of the E. coli name, CydD.
          Length = 529

 Score =  108 bits (273), Expect = 3e-24
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 5/206 (2%)

Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
           +    +            + +SFT+P G    + GPSG GKS  L  +LG +   +G+I+
Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380

Query: 391 FGDRQISRDFIEKF-SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449
                +  D        QI ++ QH  LF  +I ENI L+    S    ++  +  G  E
Sbjct: 381 VNGVPL-ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDE 439

Query: 450 DILSLKNGYQTTYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
            + +L  G  T        +     Q++ L+R    +  +LL+DEP  HLD E +     
Sbjct: 440 FVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499

Query: 508 LLKQFKENKKTIVIISHDPTIISMSD 533
            L+   +  +T+++++H   +   +D
Sbjct: 500 ALRALAQG-RTVLLVTHRLALAERAD 524


>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
           transporter, peptidase/ATP-binding protein.  This
           protein describes an multidomain ABC transporter subunit
           that is one of three protein families associated with
           some regularity with a distinctive family of putative
           bacteriocins. It includes a bacteriocin-processing
           peptidase domain at the N-terminus. Model TIGR03793
           describes a conserved propeptide region for this
           bacteriocin family, unusual because it shows obvious
           homology a region of the enzyme nitrile hydratase up to
           the classic Gly-Gly cleavage motif. This family is
           therefore predicted to be a subunit of a bacteriocin
           processing and export system characteristic to this
           system that we designate NHPM, Nitrile Hydratase
           Propeptide Microcin.
          Length = 710

 Score = 97.3 bits (243), Expect = 9e-21
 Identities = 99/444 (22%), Positives = 170/444 (38%), Gaps = 62/444 (13%)

Query: 113 ISSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITIL-FQA 171
           +   DQ+ +F++  +    LD +    + +L     P+L     L GI    I +L  Q 
Sbjct: 257 VQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT----LIGIAFAAINVLALQL 312

Query: 172 NNERLERRYKKSRQDEINFGKAI------LHNSEYIYAPSTRDFLLTYWNKKRATS-QEY 224
            + R     ++ +QD    GK        L + E + A        + W   +A      
Sbjct: 313 VSRRRVDANRRLQQDA---GKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQ 369

Query: 225 QSLIAKKYYFGISVTKTLRMTLQS-SILGIGAWLVIHQKLSAGAIIATSIITARAMAPLE 283
           Q L       G  V  TL  +L S  IL +G   V+  +L+ G ++A   + +  + P+ 
Sbjct: 370 QELGVLTQILG--VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVN 427

Query: 284 QIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNT---------ITAK 334
            ++    +L   L+      +LN    +L +            +  +         +  +
Sbjct: 428 NLVGFGGTLQ-ELEG-----DLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481

Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF--LLCMLGLLTLEKGTISFG 392
           NI F        + +N S T+  G    + G SG GKS    L+   GL     G I F 
Sbjct: 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA--GLYQPWSGEILFD 539

Query: 393 DR---QISRDFIEKFSAQIGYLSQHCSLFPISITENIIL---SHDQNSLHIAQKTAKIVG 446
                +I R+ +   +  +  + Q   LF  ++ +N+ L   +     L  A K A I  
Sbjct: 540 GIPREEIPREVL---ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAI-- 594

Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNN 504
            H+ I S   GY           +  Q+ RL  +R +  NP+IL++DE    LD E +  
Sbjct: 595 -HDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE-- 651

Query: 505 FYTLLKQFKENKK----TIVIISH 524
                K   +N +    T +I++H
Sbjct: 652 -----KIIDDNLRRRGCTCIIVAH 670


>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
           transporter, ATP-binding protein.  Members of this
           protein family are ABC transporter ATP-binding subunits,
           part of a three-gene putative bacteriocin transport
           operon. The other subunits include another ATP-binding
           subunit (TIGR03796), which has an N-terminal propeptide
           cleavage domain, and an HlyD homolog (TIGR03794). In a
           number of genomes, a conserved propeptide sequence with
           a classic Gly-Gly motif.
          Length = 686

 Score = 93.1 bits (232), Expect = 2e-19
 Identities = 114/520 (21%), Positives = 203/520 (39%), Gaps = 72/520 (13%)

Query: 18  FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFG---FDL 74
               +       +L +  P+    +  + I    +  L+    I L L A   G   F L
Sbjct: 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ---IALALLAAAVGAAAFQL 194

Query: 75  IRS----RL--LIESS----------HLIERFFKPYIITVTKKYEMDGTS--LFSIISSL 116
            +S    RL   +++S           L   FF+ Y            ++  L S    +
Sbjct: 195 AQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY------------STGDLASRAMGI 242

Query: 117 DQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERL 176
            Q+++ ++   L  LL  +F  + + L F     L   A+   ++ + +T++      R 
Sbjct: 243 SQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK 302

Query: 177 ERRYKKSRQDEIN-------FGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIA 229
           ERR       +I+        G + L     +     R F    W K  +  ++ + L A
Sbjct: 303 ERR-LLELSGKISGLTVQLINGISKLR----VAGAENRAF--ARWAKLFSRQRKLE-LSA 354

Query: 230 KKYYFGISVTKTLRMTLQSSIL-GIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINS 288
           ++    ++V   +   L S+ L      L+    LS G+ +A +         + Q+ N+
Sbjct: 355 QRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNT 414

Query: 289 KKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLIC 348
             S+   +   +    +     L    ++K +P   +LS   I    + FR +    LI 
Sbjct: 415 LISILAVIPLWERAKPI--LEALPEVDEAKTDP--GKLSGA-IEVDRVTFRYRPDGPLIL 469

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
            ++S  I  G    I GPSG GKS  L  +LG  T E G++ +  + ++   ++    Q+
Sbjct: 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529

Query: 409 GYLSQHCSLFPISITENII----LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
           G + Q+  L   SI ENI     L+ D+     A + A++ G  EDI ++  G  T    
Sbjct: 530 GVVLQNGRLMSGSIFENIAGGAPLTLDE-----AWEAARMAGLAEDIRAMPMGMHTVI-- 582

Query: 465 DEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNE 500
            E    +     Q++ ++R +   P ILL DE    LDN 
Sbjct: 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 87.1 bits (216), Expect = 1e-17
 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 11/296 (3%)

Query: 242 LRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKY 301
            ++ L   IL  GA+LV+  KL+ G +I  + + +  + PLE IIN    L   L++ + 
Sbjct: 388 TKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN----LQPKLQAARV 443

Query: 302 LINLNDFTTLLNSSDSKKEPIS-MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360
             N  +   L++S    K+  + +   N  I   ++ +     S ++  ++S TI   S 
Sbjct: 444 ANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNIL-SDISLTIKMNSK 502

Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420
             I G SG GKS     ++G      G I      +           I YL Q   +F  
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG 562

Query: 421 SITENIILSHDQN-SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS- 478
           SI EN++L   +N S        +I    +DI ++  GYQT    +    +  QK R++ 
Sbjct: 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622

Query: 479 -RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533
            R +  +  +L++DE   +LD   +      L   ++  KTI+ ++H  ++   SD
Sbjct: 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLSVAKQSD 676


>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit.  The
           gene pair cydCD encodes an ABC-family transporter in
           which each gene contains an N-terminal membrane-spanning
           domain (pfam00664) and a C-terminal ATP-binding domain
           (pfam00005). In E. coli these genes were discovered as
           mutants which caused the terminal heme-copper oxidase
           complex cytochrome bd to fail to assemble. Recent work
           has shown that the transporter is involved in export of
           redox-active thiol compounds such as cysteine and
           glutathione. The linkage to assembly of the cytochrome
           bd complex is further supported by the conserved operon
           structure found outside the gammaproteobacteria
           (cydABCD) containing both the transporter and oxidase
           genes components. The genes used as the seed members for
           this model are all either found in the
           gammproteobacterial context or the CydABCD context. All
           members of this family scoring above trusted at the time
           of its creation were from genomes which encode a
           cytochrome bd complex.
          Length = 529

 Score = 79.7 bits (197), Expect = 2e-15
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
            +S  +P G    I GPSG GKS  L+ + GLL   +G ++     +S    ++   +I 
Sbjct: 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS-SLQDELRRRIS 411

Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469
             +Q   LF  ++ +N+ L     +        + VG  + + SL +G  T         
Sbjct: 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471

Query: 470 N--IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDP 526
           +    Q++ L+R +  +  ILL+DEP  HLD   ++     L     + KT+V+I+H  
Sbjct: 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA-ALSGKTVVVITHHL 529


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score = 79.6 bits (197), Expect = 2e-15
 Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 41/230 (17%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCM--LGLLTLE---KGTISFGDRQISRDFIEK 403
           +N++  IP+     + GPSGCGKS  L  +  +  L      +G + F  + I    I+ 
Sbjct: 18  KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77

Query: 404 FS--AQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVG-------- 446
                ++G + Q  + FP+SI +NI          D+  L  I +++ K           
Sbjct: 78  VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR 137

Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
            H+  L L  G Q             Q++ ++R +A  P +LL+DEP   LD  A     
Sbjct: 138 LHDSALGLSGGQQ-------------QRLCIARALAVEPEVLLLDEPTSALDPIATGKIE 184

Query: 507 TLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIF 553
            L+++ K+   TIVI++H+      +SD +  F+   G L  +G T+ IF
Sbjct: 185 ELIQELKKK-YTIVIVTHNMQQAARISDRTAFFY--DGELVEYGPTEQIF 231


>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 78.8 bits (194), Expect = 4e-15
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 36/199 (18%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNF---LLCMLGLLTLEK--GTISFGDRQISRDFIE- 402
           +N++ +IPE     I GPSGCGKS F   L  M+ ++   K  G +++    I +  ++ 
Sbjct: 29  KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88

Query: 403 -KFSAQIGYLSQHCSLFPISITENII-------LSHDQNSLHIAQKTAKIVG-------- 446
            +    IG + Q  + FP SI +N+          + +    I +K+ K V         
Sbjct: 89  VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR 148

Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
            H   LSL  G Q             Q++ ++R +A NP +LLMDEP   LD  +     
Sbjct: 149 LHTQALSLSGGQQ-------------QRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195

Query: 507 TLLKQFKENKKTIVIISHD 525
            L+ + KE K TIVI++H+
Sbjct: 196 ELILKLKE-KYTIVIVTHN 213


>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
           
          Length = 237

 Score = 78.3 bits (193), Expect = 5e-15
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
           +++  +P GS   + GPSG GKS  L  + GL   + G I    +  +R        +IG
Sbjct: 18  DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--RKIG 75

Query: 410 YLSQHCSLFP-ISITENI-----ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463
           ++ QH +LF  +++ +NI     I  H +     A+  A++    E++L L    Q    
Sbjct: 76  FVFQHYALFKHLTVRDNIAFGLEIRKHPK-----AKIKARV----EELLEL---VQLEGL 123

Query: 464 SDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-T 518
            D  P  +     Q++ L+R +A  P +LL+DEP   LD + +    + L++  +    T
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183

Query: 519 IVIISHD 525
            V ++HD
Sbjct: 184 TVFVTHD 190


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 77.8 bits (191), Expect = 7e-15
 Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 46/253 (18%)

Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE----- 385
           I   N+ F     ++ I + +S  I +     I GPSGCGKS FL C+  +  LE     
Sbjct: 8   IKVNNLSF--YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65

Query: 386 KGTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443
           +G + F ++ I   R  + +   Q+  +    +LFP+S+ +N+                K
Sbjct: 66  EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG------------VK 113

Query: 444 IVGCH-----EDILSLKNGYQTTYCSDEIPYNI-----------VQKIRLSRIIANNPAI 487
           IVG       +DI  +++  +     DEI + I            Q++ ++R +A  P +
Sbjct: 114 IVGWRPKLEIDDI--VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKV 171

Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFK-ENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL 545
           LLMDEP + LD  A     +L++  +  ++ T+VI+SH+   +  +SDF+  F   +  +
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI 231

Query: 546 -----FGLTQDIF 553
                FGLT+ IF
Sbjct: 232 GQLVEFGLTKKIF 244


>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
           family.  Members of this protein family are found mostly
           in the Cyanobacteria, but also in the Planctomycetes.
           Cyanobacterial examples are involved in heterocyst
           formation, by which some fraction of members of the
           colony undergo a developmental change and become capable
           of nitrogen fixation. The DevBCA proteins are thought
           export of either heterocyst-specific glycolipids or an
           enzyme essential for formation of the laminated layer
           found in heterocysts.
          Length = 220

 Score = 77.7 bits (192), Expect = 7e-15
 Identities = 43/196 (21%), Positives = 99/196 (50%), Gaps = 11/196 (5%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFI 401
           + +  +++  I  G   I+ GPSG GK+  L  + GL ++++G++    +++   S   +
Sbjct: 18  KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77

Query: 402 EKFSAQIGYLSQHCSLFPISIT--ENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN-GY 458
            +    IGY+ Q  +L    +T  +N+ ++ +    +++ + A+       +L     G 
Sbjct: 78  VQLRRNIGYIFQAHNLLG-FLTARQNVQMALELQP-NLSYQEARE--RARAMLEAVGLGD 133

Query: 459 QTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKK 517
              Y    +     Q++ ++R + + P ++L DEP   LD+++  +   L+++  +E   
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193

Query: 518 TIVIISHDPTIISMSD 533
           TI+I++HD  I+ ++D
Sbjct: 194 TILIVTHDNRILDVAD 209


>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
           ATP-binding component PhnT.  This ATP-binding component
           of an ABC transport system is found in Salmonella and
           Burkholderia lineages in the vicinity of enzymes for the
           breakdown of 2-aminoethylphosphonate.
          Length = 362

 Score = 76.6 bits (188), Expect = 2e-14
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 38/233 (16%)

Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQISRDFI 401
           +  +  +LS  I  G    + G SGCGK+  L  + G +      G I+  DR ++    
Sbjct: 17  ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH--A 74

Query: 402 EKFSAQIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQKTA---KIVG----CHED 450
                 +  L Q+ +LFP + + +N+   + +       IA++ A   K+VG        
Sbjct: 75  PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL 134

Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
              L  G Q             Q+I ++R IA  P +LL+DEPL  LD   + N    + 
Sbjct: 135 PAQLSGGMQ-------------QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181

Query: 511 QFKEN--KKTIVIISHDPT--------IISMSDFSLIFHPIQGSLFGLTQDIF 553
              E   + TI+ ++HD             M D  L  H    +L+    D F
Sbjct: 182 ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234


>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 269

 Score = 74.8 bits (184), Expect = 6e-14
 Identities = 60/247 (24%), Positives = 117/247 (47%), Gaps = 32/247 (12%)

Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
           M   N+ I  KN+ F+ +  +    +++SF IP+G    I G +G GKS     M+G+  
Sbjct: 1   MEDKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60

Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHC-SLFPISIT--------ENIILSHDQNS 434
           ++ G I + ++ I+ D  EK    IG + Q+  + F  SI         EN  + +D+  
Sbjct: 61  VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120

Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLM 490
             +++             +LK          E P  +     Q++ ++ ++A NP+++++
Sbjct: 121 RRVSE-------------ALKQVDMLERADYE-PNALSGGQKQRVAIAGVLALNPSVIIL 166

Query: 491 DEPLYHLDNEAKNNFYTLLKQFKENKK-TIVIISHDPTIISMSDFSLIFHPIQGSLF--G 547
           DE    LD +A+ N   L+++ K     TI+ I+HD +    +D  ++ +  +G+++  G
Sbjct: 167 DEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMN--KGTVYKEG 224

Query: 548 LTQDIFK 554
              +IF 
Sbjct: 225 TPTEIFD 231


>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
           transporter, lactococcin 972 group.  A gene pair with a
           fairly wide distribution consists of a polypeptide
           related to the lactococcin 972 (see TIGR01653) and
           multiple-membrane-spanning putative immunity protein
           (see TIGR01654). This model represents a small clade
           within the ABC transporters that regularly are found
           adjacent to these bacteriocin system gene pairs and are
           likely serve as export proteins.
          Length = 206

 Score = 74.2 bits (183), Expect = 9e-14
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 30/209 (14%)

Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL-TLEKGTISFGDR---QI 396
           K   ++I  +L+ TI +G    I G SG GKS  LL ++GLL   + G +    +    +
Sbjct: 7   KFGDKIILDDLNLTIEKGKMYAIIGESGSGKST-LLNIIGLLEKFDSGQVYLNGKETPPL 65

Query: 397 SRDFIEKF-SAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC------- 447
           +     KF   ++GYL Q+ +L    ++ EN+ L      L   +K  K           
Sbjct: 66  NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN 125

Query: 448 ---HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
               + I  L  G Q             Q++ L+R I  +P ++L DEP   LD + ++ 
Sbjct: 126 LKLKQKIYELSGGEQ-------------QRVALARAILKDPPLILADEPTGSLDPKNRDE 172

Query: 505 FYTLLKQFKENKKTIVIISHDPTIISMSD 533
              LL +  +  KTI+I++HDP +   +D
Sbjct: 173 VLDLLLELNDEGKTIIIVTHDPEVAKQAD 201


>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 569

 Score = 74.0 bits (182), Expect = 1e-13
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 3/189 (1%)

Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397
           F   +T     +N++FT+  G    I GP+G GKS  L  +     + +G I F D  ++
Sbjct: 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT 380

Query: 398 RDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG 457
           +  ++ + +++  +SQ   LF  ++  NI L     +    +  A++   H+DIL L  G
Sbjct: 381 KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQG 440

Query: 458 YQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
           Y T      +  +  QK R+S  R +  N  IL++D+ L  +D   ++     L+Q+ E 
Sbjct: 441 YDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE- 499

Query: 516 KKTIVIISH 524
            +T++I +H
Sbjct: 500 GRTVIISAH 508


>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
           Family protein. 
          Length = 216

 Score = 73.6 bits (181), Expect = 1e-13
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 15/208 (7%)

Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
           I  + +        +    NL+F I +G    + G SG GKS FL  +LG+    +G I 
Sbjct: 2   IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61

Query: 391 FGDRQISR---DFIEKFSAQIGYLSQ-HCSLFPISITENIILSHDQNSLHIAQKTAK--- 443
           F  + ++R     I      IG + Q H  L   ++ +N+        L I     +   
Sbjct: 62  FNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP-----LRIIGVPPRDAN 116

Query: 444 -IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
             V    + + L+   +      ++     Q++ ++R I + P +LL DEP  +LD E  
Sbjct: 117 ERVSAALEKVGLEG--KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174

Query: 503 NNFYTLLKQFKENKKTIVIISHDPTIIS 530
            +   L ++F     T+++ +HD  ++ 
Sbjct: 175 RDIMRLFEEFNRRGTTVLVATHDINLVE 202


>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 285

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 43/270 (15%)

Query: 309 TTLLNSSDSKKEPISMRLSNNTITAKNI-VFRDKKTSRLICQNLSFTIPEGSCCIIAGPS 367
           TT  +++D   +P +       I A+++ VF   + +     ++S  IPE     + GPS
Sbjct: 19  TTATDTTDPSGDPAASS-GETVIEARDLNVFYGDEQA---LDDVSMDIPENQVTAMIGPS 74

Query: 368 GCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDFIEKFS--AQIGYLSQHCSLFPI 420
           GCGKS FL C   M  L+   +  G ++F  + +    ++  +   +IG + Q  + FP 
Sbjct: 75  GCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK 134

Query: 421 SITENI-----ILSHDQNSLHIAQKTAKIVG--------CHEDILSLKNGYQTTYCSDEI 467
           SI +N+     I  +D +     +++ +                L L  G Q        
Sbjct: 135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ-------- 186

Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-P 526
                Q++ ++R IA +P ++LMDEP   LD  A +    L+++  E   T+VI++H+  
Sbjct: 187 -----QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ 240

Query: 527 TIISMSDFSLIFHPIQGSL--FGLTQDIFK 554
               +SD + +F    G L  F  T  IF+
Sbjct: 241 QAARISDKTAVFL-TGGELVEFDDTDKIFE 269


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 22/198 (11%)

Query: 341 KKT-SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR- 398
           KKT  +    +    I +G   +I G SG GKS  +  +  L+    G I      I + 
Sbjct: 1   KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60

Query: 399 ---DFIEKFSAQIGYLSQHCSLFP-ISITENIILS------HDQNSLHIAQKTAKIVGCH 448
              +  E    +IG + Q  +LFP ++I +N  L        +Q     A +  K+VG  
Sbjct: 61  SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120

Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
           E        Y+  Y  DE+   + Q++ L+R +A  P ILLMDE    LD   +++    
Sbjct: 121 E--------YEHRY-PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171

Query: 509 LKQFKEN-KKTIVIISHD 525
           LK+ +   +KTIV I+HD
Sbjct: 172 LKKLQATLQKTIVFITHD 189


>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 72.5 bits (178), Expect = 3e-13
 Identities = 47/204 (23%), Positives = 104/204 (50%), Gaps = 14/204 (6%)

Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
           +N I  +++ FR K  ++ + + LS +IPEGS   + GP+G GKS  LL + G+   ++G
Sbjct: 2   DNIIEVEDLHFRYKDGTKAL-KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60

Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHC--SLFPISITENIILSHDQNSLHIAQKTAKIV 445
            +    R+++ +  +   +++G + Q     +F  ++ +++        L   +   ++ 
Sbjct: 61  RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV- 119

Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIV--QKIR--LSRIIANNPAILLMDEPLYHLDNEA 501
              E+ L     +      D+ PY++   QK R  ++ ++A +P ++++DEP+ +LD   
Sbjct: 120 ---EEALKAVRMWDF---RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173

Query: 502 KNNFYTLLKQFKENKKTIVIISHD 525
           +     +L +     KT+++ +HD
Sbjct: 174 QETLMEILDRLHNQGKTVIVATHD 197


>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein.  This model
           describes glucan exporter ATP binding protein in
           bacteria. It belongs to the larger ABC transporter
           superfamily with the characteristic ATP binding motif.
           The In general, this protein is in some ways implicated
           in osmoregulation and suggested to participate in the
           export of glucan from the cytoplasm to periplasm. The
           cyclic beta-1,2-glucan in the bactrerial periplasmic
           space is suggested to confer the property of high
           osmolority. It has also been demonstrated that mutants
           in this loci have lost functions of virulence and
           motility. It is unclear as to how virulence and
           osmoadaptaion are related.
          Length = 585

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 76/292 (26%), Positives = 123/292 (42%), Gaps = 13/292 (4%)

Query: 250 ILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFT 309
           IL IG  LVI  +LS G +IA        +  L+Q+      +    ++      L DF 
Sbjct: 257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQM---SGFITQIFEARA---KLEDFF 310

Query: 310 TLLNSSDSKKEPISMR-LSN--NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366
            L +S   ++EP     L N    +  ++I F    +S+ +  ++SF    G    I GP
Sbjct: 311 DLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGP 369

Query: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426
           +G GK+  +  +  +     G I      I+    E     I  + Q   LF  SI ENI
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429

Query: 427 ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS--DEIPYNIVQKIRLSRIIANN 484
            L  +  +     + AK    H+ IL   NGY T      + +     Q++ ++R I  N
Sbjct: 430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489

Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSL 536
             IL++DE    LD E +      +   ++N+ T  II+H  + +  +D  L
Sbjct: 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTF-IIAHRLSTVRNADLVL 540


>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 70.9 bits (174), Expect = 8e-13
 Identities = 69/241 (28%), Positives = 105/241 (43%), Gaps = 62/241 (25%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC------------MLGLLTLEKGTISFGDRQI 396
            ++   IPE +     GPSGCGKS FL C            + G +TL+   I   D ++
Sbjct: 36  FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY--DPRL 93

Query: 397 SRDFIEKFSAQIGYLSQHCSLFPISITENII-------LSHDQNSLH-IAQKTAKIVG-- 446
             D +E   A++G + Q  + FP SI EN+        L+  +  L  I + + +  G  
Sbjct: 94  --DVVE-LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLW 150

Query: 447 ------CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE 500
                  HE    L  G Q             Q++ ++R IA +P ++LMDEP   LD  
Sbjct: 151 EEVKDRLHEPGTGLSGGQQ-------------QRLCIARAIAVSPEVILMDEPCSALDPI 197

Query: 501 AKNNFYTLLKQFKENKKTIVIISHDPTIISM------SDFSLIFHPIQGSL--FGLTQDI 552
           A      L+ + ++N  TIVI++H     SM      S  +  FH   G+L   G T+ +
Sbjct: 198 ATAKVEELIDELRQN-YTIVIVTH-----SMQQAARVSQRTAFFH--LGNLVEVGDTEKM 249

Query: 553 F 553
           F
Sbjct: 250 F 250


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 70.8 bits (174), Expect = 9e-13
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 40/200 (20%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406
           I  +LS ++P G    + GP+GCGKS  L C   LLT + GT+  GD+ IS       S+
Sbjct: 17  ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS-----MLSS 71

Query: 407 QIGYLSQHCSLFP--------ISITENII------LSH-------DQNSLHIAQKTAKIV 445
           +   L++  +L P        I++ E +       LS        D   ++ A +  +I 
Sbjct: 72  R--QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN 129

Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
              +  L+  +G Q             Q+  L+ ++A +  ++L+DEP  +LD   +   
Sbjct: 130 HLADRRLTDLSGGQR------------QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177

Query: 506 YTLLKQFKENKKTIVIISHD 525
             L+++     KT+V + HD
Sbjct: 178 MRLMRELNTQGKTVVTVLHD 197


>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 305

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 22/198 (11%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----GTISFGDRQISRDFIE- 402
           + +S  IPE S   + GPSGCGKS FL C+  +    K     G++    + I +D +  
Sbjct: 62  KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121

Query: 403 -KFSAQIGYLSQHCSLFPISITENIIL---SH-DQNSLHIAQKTAKIVGCHEDIL---SL 454
            +   ++G + Q  + FP SI ENI      H D N+  +A+   +     ED L   SL
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181

Query: 455 KNGYQTTYCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
           +        +D +  N +       Q++ ++R +A +P ++LMDEP   LD  A +    
Sbjct: 182 RQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241

Query: 508 LLKQFKENKKTIVIISHD 525
           L+++  E   T+V+++H+
Sbjct: 242 LIEELAEE-YTVVVVTHN 258


>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
           protein YecC; Provisional.
          Length = 250

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 37/218 (16%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
           + I  KN+V +    + L    +   +  G    I GPSG GK+  L C+  L   E GT
Sbjct: 2   SAIEVKNLVKKFHGQTVL--HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59

Query: 389 ISFGDRQI--------SRDFIEKFSAQIGYLSQHCSLFP-ISITENII--------LSHD 431
           I  GD  I         +  I +    +G++ Q+ +LFP  ++ ENII           +
Sbjct: 60  IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE 119

Query: 432 QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAI 487
           + +    +  AK VG          G +T+Y     P  +     Q++ ++R +A  P +
Sbjct: 120 EATARARELLAK-VGL--------AGKETSY-----PRRLSGGQQQRVAIARALAMRPEV 165

Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
           +L DEP   LD E        ++Q  + K+T+VI++H+
Sbjct: 166 ILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203


>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 69.3 bits (169), Expect = 2e-12
 Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 42/230 (18%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----GTISFGDRQISR---DF 400
           +N+S  IP+ S   + GPSGCGKS F+ C+  +  L K     G +S     I     D 
Sbjct: 29  KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88

Query: 401 IEKFSAQIGYLSQHCSLFPISITENIILS---HDQNSLHI------AQKTAKIVGCHED- 450
           +E     +G + Q  + FP+SI +N+      H  N   +      A ++A +     D 
Sbjct: 89  VE-LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147

Query: 451 ----ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
                LSL  G Q   C             ++R +A  P I+L DEP   LD  +     
Sbjct: 148 LKSPALSLSGGQQQRLC-------------IARTLAVKPKIILFDEPTSALDPISTARIE 194

Query: 507 TLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIF 553
            L+   K++  TIVI++H+      +SD++  F  + G L  FG T+ IF
Sbjct: 195 DLIMNLKKD-YTIVIVTHNMQQAARISDYTGFF--LMGELIEFGQTRQIF 241


>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 32/190 (16%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
           ++++ T+  G   ++ GPSGCGK+  L  + G +  + G+I+   + +         A+ 
Sbjct: 18  EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAER 72

Query: 409 GYLSQHCSLFP-ISITENIIL-------SHDQNSLHIAQKTAKIVGC----HEDILSLKN 456
           G + Q+  L P  ++ +N+            Q  L IA +  K VG        I  L  
Sbjct: 73  GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-LEIAHQMLKKVGLEGAEKRYIWQLSG 131

Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKEN 515
           G +             Q++ ++R +A NP +LL+DEP   LD   +    TLL + ++E 
Sbjct: 132 GQR-------------QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178

Query: 516 KKTIVIISHD 525
            K +++I+HD
Sbjct: 179 GKQVLLITHD 188


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included).
          Length = 325

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 363 IAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-IS 421
           + GPSGCGK+  L  + G    + G+I      ++          I  + Q  +LFP ++
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH--INMVFQSYALFPHMT 58

Query: 422 ITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQTTYCSDEIPYNIVQKIRLSR 479
           + EN+        +  A+   ++     + L L     +       ++     Q++ L+R
Sbjct: 59  VEENVAFGLKMRKVPRAEIKPRV----LEALRLVQLEEFADRKPH-QLSGGQQQRVALAR 113

Query: 480 IIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHDPT-IISMSD 533
            +   P ILL+DEPL  LD + ++     LK  +E    T V ++HD    ++MSD
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169


>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
           protein.  Members of this protein family are the
           ATP-binding subunit of a three-protein transporter. This
           family belongs, more broadly, to the family of proline
           and glycine-betaine transporters, but members have been
           identified by direct characterization and by
           bioinformatic means as choline transporters. Many
           species have several closely-related members of this
           family, probably with variable abilities to act
           additionally on related quaternary amines.
          Length = 382

 Score = 68.3 bits (167), Expect = 6e-12
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 23/193 (11%)

Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF--GDRQIS-------- 397
             N S  I EG  C++ G SG GKS+ L  + GL  + +G++    GD  I         
Sbjct: 40  VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT 99

Query: 398 -RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLK 455
            R        ++  + Q  +L P +++ EN+    +   +  A++  ++    ++ L L 
Sbjct: 100 LRRLRTH---RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRV----DEQLELV 152

Query: 456 N--GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
               +       E+   + Q++ L+R  A +  ILLMDEP   LD   +      L + +
Sbjct: 153 GLAQWADKK-PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211

Query: 514 EN-KKTIVIISHD 525
               KTI+ +SHD
Sbjct: 212 AKLNKTIIFVSHD 224


>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 26/208 (12%)

Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS---------AQIGYLSQHC 415
           GPSGCGKS FL C   +          G+  I  D I+ +S         A++G + Q  
Sbjct: 38  GPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI--DGIDVYSVDTNVVLLRAKVGMVFQKP 95

Query: 416 SLFPISITENII-------LSHDQNSL-HIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467
           + FP SI +N+        L+ ++  L  I +K+   VG  E+   L +  + +    E+
Sbjct: 96  NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE---LGDRLKDSAF--EL 150

Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-P 526
                Q++ ++R IA  P +LLMDEP   LD  A N    L+++ K+N  TI++++H   
Sbjct: 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHSMK 209

Query: 527 TIISMSDFSLIFHPIQGSLFGLTQDIFK 554
               +SD    F   +   +  TQ+IFK
Sbjct: 210 QAKKVSDRVAFFQSGRIVEYNTTQEIFK 237


>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding cassette
           (ABC) protein of the three subunit molybdate ABC
           transporter. The three proteins of this complex are
           homologous to proteins of the sulfate ABC transporter.
           Molybdenum may be used in nitrogenases of
           nitrogen-fixing bacteria and in molybdopterin cofactors.
           In some cases, molybdate may be transported by a sulfate
           transporter rather than by a specific molybdate
           transporter.
          Length = 354

 Score = 67.8 bits (166), Expect = 7e-12
 Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 66/248 (26%)

Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR--QISRDFI---- 401
             +  FT+P      I G SG GK+  +  + GL   ++G I    R    SR  I    
Sbjct: 13  SLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPP 72

Query: 402 EKFSAQIGYLSQHCSLFP-ISITENII--LSHDQNSLHIAQKTAKIVGCHEDIL------ 452
           EK   +IGY+ Q   LFP +S+  N+   +   + S        +++    ++L      
Sbjct: 73  EK--RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISF-ERVI----ELLGIGHLL 125

Query: 453 -----SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
                 L  G +             Q++ + R + ++P +LLMDEPL  LD+  K     
Sbjct: 126 GRLPGRLSGGEK-------------QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172

Query: 508 LLKQF-KENKKTIVIISHDPT-------------------------IISMSDFSLIFHPI 541
            L++   E    I+ +SH                            + +  D   +    
Sbjct: 173 YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232

Query: 542 QGSLFGLT 549
           QGSL    
Sbjct: 233 QGSLIEGV 240


>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
           protein.  This model represents LolD, a member of the
           ABC transporter family (pfam00005). LolD is involved in
           localization of lipoproteins in some bacteria. It works
           with a transmembrane protein LolC, which in some species
           is a paralogous pair LolC and LolE. Depending on whether
           the residue immediately following the new, modified
           N-terminal Cys residue, the nascent lipoprotein may be
           carried further by LolA and LolB to the outer membrane,
           or remain at the inner membrane. The top scoring
           proteins excluded by this model include homologs from
           the archaeal genus Methanosarcina.
          Length = 221

 Score = 67.8 bits (166), Expect = 7e-12
 Identities = 44/227 (19%), Positives = 99/227 (43%), Gaps = 19/227 (8%)

Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
           +  +N+   +++ K    + + +S +I +G    I G SG GKS  L  + GL     G 
Sbjct: 2   LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61

Query: 389 ISFGDRQISRDFIEKFSA----QIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQK 440
           + F  + +S+    + +     ++G++ Q   L P  +  EN+   +L   ++     ++
Sbjct: 62  VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121

Query: 441 TAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE 500
             ++      +  +   ++  +   E+     Q++ ++R + N P+++L DEP  +LDN 
Sbjct: 122 AYEM------LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175

Query: 501 AKNNFYTLLKQFKENKKT-IVIISHDPTIISMSDFSLIFHPIQGSLF 546
                + L+ +      T  ++++HD  +        +     G LF
Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELA--KKLDRVLEMKDGQLF 220


>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 67.4 bits (164), Expect = 9e-12
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 32/245 (13%)

Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE----- 385
           I  K++ F    +  +  + +S  I       I GPSGCGKS F+  +  +  LE     
Sbjct: 8   IKVKDLSFYYNTSKAI--EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65

Query: 386 KGTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443
           +G + F  + I   R  I +   QIG + Q  + FP+SI EN+        + I+ K  +
Sbjct: 66  EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAY-----GVRISAKLPQ 120

Query: 444 IVGCHEDIL--SLKNGYQTTYCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPL 494
                ++I+  +LK         D++  + +       Q++ ++R +A  P +LLMDEP 
Sbjct: 121 AD--LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178

Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL-----FGL 548
             LD  A      L+   + ++ TI I++H+      +SDF+  F   +  +     FG+
Sbjct: 179 SALDPIATMKVEELIHSLR-SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237

Query: 549 TQDIF 553
           T  IF
Sbjct: 238 TTQIF 242


>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 67.4 bits (165), Expect = 9e-12
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 365 GPSGCGKSNFLLCM------LGLLTLEKGTISFGDRQISRDFIEKFS--AQIGYLSQHCS 416
           GPSG GKS +L  +      + +  +  G I +    I+R  I  +     IG + Q  +
Sbjct: 53  GPSGSGKSTYLRSLNRMNDTIDIARVT-GQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111

Query: 417 LFPISITENIILSHDQNSLHIAQKTAKIV---------------GCHEDILSLKNGYQTT 461
            F  SI ENI  + ++  +   +   +IV                 H+  L+L  G Q  
Sbjct: 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ-- 169

Query: 462 YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI 521
                      Q++ ++R IA  P ILLMDEP   LD  +       + + K+N  TI+I
Sbjct: 170 -----------QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-YTIII 217

Query: 522 ISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553
           ++H+    +  SD++  F+   G L  +  T++IF
Sbjct: 218 VTHNMQQAARASDYTAFFY--LGDLIEYDKTRNIF 250


>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
           ATP-binding protein.  This ABC transporter ATP-binding
           protein is found in a number of genomes in operon-like
           contexts strongly suggesting a substrate specificity for
           2-aminoethylphosphonate (2-AEP). The characterized
           PhnSTUV system is absent in the genomes in which this
           system is found. These genomes encode systems for the
           catabolism of 2-AEP, making the need for a
           2-AEP-specific transporter likely.
          Length = 353

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 40/203 (19%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS------RDFIEK 403
           ++S ++ +G    + GPSGCGK+  L  + GL     GTI  G R I+      RD+   
Sbjct: 22  DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY--- 78

Query: 404 FSAQIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQKTAKI---VGCHEDILSLKN 456
                G + Q  +LFP +++ +NI   + +       +A++ A++   VG    +   + 
Sbjct: 79  -----GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG----LPGSER 129

Query: 457 GYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512
            Y         P  +     Q++ L+R +A +P +LL+DEPL  LD   + +  T ++Q 
Sbjct: 130 KY---------PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180

Query: 513 KENKK-TIVIISHD-PTIISMSD 533
           +     T ++++HD    +SM+D
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMAD 203


>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
           YbbL; Provisional.
          Length = 225

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 25/220 (11%)

Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
           M+ ++  +  +N+ +        I  N+SF++  G   +I GPSGCGKS  L  +  L++
Sbjct: 1   MQENSPLLQLQNVGYL--AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58

Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENII----LSHDQNSLHIAQ 439
              GT+ F    IS    E +  Q+ Y +Q  +LF  ++ +N+I    + + Q    I  
Sbjct: 59  PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL 118

Query: 440 KTAKIVGCHEDIL-----SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494
              +     + IL      L  G +             Q+I L R +   P +LL+DE  
Sbjct: 119 DDLERFALPDTILTKNIAELSGGEK-------------QRISLIRNLQFMPKVLLLDEIT 165

Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVI-ISHDPTIISMSD 533
             LD   K+N   ++ ++   +   V+ ++HD   I+ +D
Sbjct: 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHAD 205


>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 45/254 (17%)

Query: 326 LSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL- 384
            +   IT+ ++     K   L   +L F   +     + GPSGCGKS +L  +  +  L 
Sbjct: 1   EAKKIITSSDVHLFYGKFEALKGIDLDFN--QNEITALIGPSGCGKSTYLRTLNRMNDLI 58

Query: 385 ----EKGTISFGDRQI---SRDFIEKFSAQIGYLSQHCSLFPISITENIILS------HD 431
                 G +S   + I   + D ++    Q+G + Q  + FP SI EN+I         D
Sbjct: 59  PGVTITGNVSLRGQNIYAPNEDVVQ-LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKD 117

Query: 432 QNSLHIAQKTAKIVGC---------HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA 482
           +  L  A +T+              HE  LSL  G Q             Q++ ++R++A
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ-------------QRVCIARVLA 164

Query: 483 NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPI 541
             P ++L+DEP   LD  +      +L + ++ + TI++++H     S +SD +  F  +
Sbjct: 165 VKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFF--L 221

Query: 542 QGSL--FGLTQDIF 553
            G+L  F  T+ +F
Sbjct: 222 TGNLIEFADTKQMF 235


>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
            This protein is related to a Proteobacterial ATP
           transporter that exports lipid A and to eukaryotic
           P-glycoproteins.
          Length = 576

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 25/294 (8%)

Query: 250 ILGIGAWLVIHQKLSAG---AIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLN 306
           +L +GA  VI  K+SAG     +  +++ A ++  L ++    +      + L       
Sbjct: 259 VLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL------- 311

Query: 307 DFTTLLNSSDSKKEPISMRLSNNTITAK----NIVFR-DKKTSRLICQNLSFTIPEGSCC 361
               LL +    K P   +     +  +     + F    +  +     L+ T+  G   
Sbjct: 312 --IELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETV 369

Query: 362 IIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDFIEKFSAQIGYLSQHCSLF 418
            + GPSG GKS     +L     + G I       RQ+      +  A++  + Q   LF
Sbjct: 370 ALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA---ELRARMALVPQDPVLF 426

Query: 419 PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS 478
             S+ ENI       +    +  A+    HE I +L  GY T      +  +  Q+ R++
Sbjct: 427 AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486

Query: 479 --RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530
             R I  +  ILL+DE    LD E++      L+   + + T++I     T++ 
Sbjct: 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK 540


>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 53/235 (22%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLL--TLEKGTISFGDRQISR---DFI 401
           ++S  IP+       GPSGCGKS  L C   M  L+     +G I    + I     D  
Sbjct: 43  DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102

Query: 402 EKFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVGC------- 447
           E    ++G + Q  + FP SI EN++        +++  L    +++ +           
Sbjct: 103 E-LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR 161

Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
            HE+   L  G Q             Q++ ++R IA  P +LL+DEP   LD  +     
Sbjct: 162 LHENAFGLSGGQQ-------------QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE 208

Query: 507 TLLKQFKENKKTIVIISHDPTIISM------SDFSLIFHPIQGSL--FGLTQDIF 553
            L+ + K  K TIVI++H     +M      SD++   +   G L  +G T  +F
Sbjct: 209 ELITELKS-KYTIVIVTH-----NMQQAARVSDYTAFMY--MGKLVEYGDTDTLF 255


>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. 
          Length = 711

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 62/311 (19%), Positives = 119/311 (38%), Gaps = 22/311 (7%)

Query: 232 YYFGISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKS 291
           Y   +  T  L M +Q  +L  G  LV+  K+S+G +++  +   +    +  +      
Sbjct: 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSG 443

Query: 292 LNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRD------KKTSR 345
           +   + + + +    D    +  + +   P+++           I F+D       +   
Sbjct: 444 MMQAVGASEKVFEYLDRKPNIPLTGTLA-PLNLE--------GLIEFQDVSFSYPNRPDV 494

Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF- 404
            + + L+FT+  G    + GPSG GKS     +  L     G +   D      +   + 
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL-DGVPLVQYDHHYL 553

Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
             Q+  + Q   LF  S+ ENI               AK    H+ I+   NGY T    
Sbjct: 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613

Query: 465 DEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522
                +  QK R+  +R +   P +L++DE    LD E +       +      +T+++I
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRSRAS--RTVLLI 670

Query: 523 SHDPTIISMSD 533
           +H  + +  +D
Sbjct: 671 AHRLSTVERAD 681


>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 37/229 (16%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQI--SRDFI 401
            +++ +IP+     + GPSGCGKS  L C   M  L+   +  G I +    I  S   +
Sbjct: 23  YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82

Query: 402 EKFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVG-------- 446
                +IG + Q  + FP SI EN+          ++ +L  I +K+ K           
Sbjct: 83  VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR 142

Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
            H+  LSL  G Q             Q++ ++R +A NP ++LMDEP   LD  A     
Sbjct: 143 LHDSALSLSGGQQ-------------QRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189

Query: 507 TLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDIFK 554
            L++  K+ + T++I++H+    + +SD++   +  +   F  T  IF+
Sbjct: 190 DLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237


>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
           Provisional.
          Length = 353

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 25/192 (13%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406
           +  ++S  IP G    + GPSG GK+  L  + GL     G I F    +SR  +     
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--LHARDR 74

Query: 407 QIGYLSQHCSLFP-ISITENI-----ILSHDQ--NSLHIAQKTAKIVGCHEDILSLKNGY 458
           ++G++ QH +LF  +++ +NI     +L   +  N+  I  K  +       +L +    
Sbjct: 75  KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQ-------LLEM---V 124

Query: 459 QTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
           Q  + +D  P  +     Q++ L+R +A  P ILL+DEP   LD + +      L+Q  E
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184

Query: 515 NKK-TIVIISHD 525
             K T V ++HD
Sbjct: 185 ELKFTSVFVTHD 196


>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 264

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 40/235 (17%)

Query: 330 TITAKNIVFRDKKTS-----RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL 384
           T+     V R +  +      L  +N+   IP+       GPSGCGKS  L C   L  L
Sbjct: 3   TLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL 62

Query: 385 -----EKGTISFGDRQISRDFIE--KFSAQIGYLSQHCSLFPISITENI-----ILSHDQ 432
                 +G ++F  + +    ++  +   +IG + Q  + FP SI +NI     I  +  
Sbjct: 63  IPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKG 122

Query: 433 NSLHIAQKTAKIVGCHEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANN 484
           +   + +++ +     +++        LSL  G Q             Q++ ++R IA  
Sbjct: 123 DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ-------------QRLCIARAIAVQ 169

Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIF 538
           P ++LMDEP   LD  +      L+ + KE + TI+I++H+    + +SD +  F
Sbjct: 170 PEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFF 223


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
           model describes FtsE, a member of the ABC transporter
           ATP-binding protein family. This protein, and its
           permease partner FtsX, localize to the division site. In
           a number of species, the ftsEX gene pair is located next
           to FtsY, the signal recognition particle-docking
           protein.
          Length = 214

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 37/206 (17%)

Query: 343 TSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR---D 399
                  ++S  I +G    + GPSG GK+  L  + G LT  +G +      ++R    
Sbjct: 13  GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72

Query: 400 FIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIA-----------QKTAKIVGC 447
            +     +IG + Q   L P  ++ EN+ L      L +                + VG 
Sbjct: 73  QLPLLRRRIGVVFQDFRLLPDRTVYENVALP-----LEVRGKKEREIQRRVGAALRQVGL 127

Query: 448 HEDI----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
                     L  G Q             Q++ ++R I N+P +LL DEP  +LD +   
Sbjct: 128 EHKADAFPEQLSGGEQ-------------QRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174

Query: 504 NFYTLLKQFKENKKTIVIISHDPTII 529
               LLK+  +   T+++ +HD +++
Sbjct: 175 RILDLLKRLNKRGTTVIVATHDLSLV 200


>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
           Provisional.
          Length = 510

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 57/268 (21%), Positives = 118/268 (44%), Gaps = 49/268 (18%)

Query: 303 INLNDFTTLLNSSDSKKEPISMRLSNNTIT------AKNIVFRDKKTSRLICQNLSFTIP 356
           ++ +D   L+   + +    +M+ + + +        +N+  RD+K  R    ++SF++ 
Sbjct: 232 VSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVR----DISFSVC 287

Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQIGYLSQH- 414
            G     AG  G G++  + C+ G+     G I    + IS R  ++     + Y+++  
Sbjct: 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347

Query: 415 --CSLFP-ISITENIILS---------------HDQNSLHIAQKTAKIVG--CH---EDI 451
                FP  SI +N+ +S               H+ +    A+   +++   CH   ++I
Sbjct: 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407

Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
             L  G Q             QK+ +S+ +   P +++ DEP   +D  AK   Y +++Q
Sbjct: 408 TELSGGNQ-------------QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454

Query: 512 FKENKKTIVIISHD-PTIISMSDFSLIF 538
             ++ K I+++S + P II++ D   +F
Sbjct: 455 LADDGKVILMVSSELPEIITVCDRIAVF 482



 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 26/192 (13%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407
           ++++ T+  G    + G +G GKS  +  + G+    KGTI+  +   ++    K +AQ 
Sbjct: 22  KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK-LDHKLAAQL 80

Query: 408 -IGYLSQHCSLF-PISITENIILSH------------DQNSLHI-AQKTAKIVGCHEDIL 452
            IG + Q  S+   +++ EN+ +              D   + + A      VG   D L
Sbjct: 81  GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-L 139

Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512
             K           +  +  Q + +++ +  +  +++MDEP   L N+  +  + ++ Q 
Sbjct: 140 DEKVA--------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191

Query: 513 KENKKTIVIISH 524
           ++    IV ISH
Sbjct: 192 RKEGTAIVYISH 203


>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 41/230 (17%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQI-SRDF-I 401
           + ++  I E     + GPSGCGKS FL     M  L+   K  G +    + I   D  +
Sbjct: 20  KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79

Query: 402 EKFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVGCHEDI--- 451
            +   ++G + Q  + FP+SI +N+          D+  L  I +K+ K     +++   
Sbjct: 80  NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR 139

Query: 452 -----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
                L L  G Q             Q++ ++R +A  P +LLMDEP   LD  +     
Sbjct: 140 LKKSALGLSGGQQ-------------QRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186

Query: 507 TLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553
            L+++ K    TIVI++H+    S +SD +  F  + G +  FG T D+F
Sbjct: 187 ELIQELK-KDYTIVIVTHNMQQASRISDKTAFF--LNGEIVEFGDTVDLF 233


>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
           This model describes the ATP binding subunit of the
           multisubunit cobalt transporter in bacteria and its
           equivalents in archaea. The model is restricted to ATP
           subunit that is a part of the cobalt transporter, which
           belongs to the ABC transporter superfamily (ATP Binding
           Cassette). The model excludes ATP binding subunit that
           are associated with other transporters belonging to ABC
           transporter superfamily. This superfamily includes two
           groups, one which catalyze the uptake of small
           molecules, including ions from the external milieu and
           the other group which is engaged in the efflux of small
           molecular weight compounds and ions from within the
           cell. Energy derived from the hydrolysis of ATP drive
           the both the process of uptake and efflux.
          Length = 190

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 11/181 (6%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSAQI 408
           L+F    G    + G +G GKS  LL + GLL  + G +      +  SR  + +   ++
Sbjct: 11  LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRV 70

Query: 409 GYLSQHC--SLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL--KNGYQTTYCS 464
           G + Q     LF   + +++        L  A+   ++     + L+    +G +     
Sbjct: 71  GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRV----REALTAVGASGLRERPTH 126

Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
             +     +++ ++  +A  P +LL+DEP   LD   +     +L++ +    T+VI +H
Sbjct: 127 -CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185

Query: 525 D 525
           D
Sbjct: 186 D 186


>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
           ATP-binding protein.  This small clade of ABC-type
           transporter ATP-binding protein components is found as a
           three gene cassette along with a periplasmic
           substrate-binding protein (TIGR03868) and a permease
           (TIGR03869). The organisms containing this cassette are
           all Actinobacteria and all contain numerous genes
           requiring the coenzyme F420. This model was defined
           based on five such organisms, four of which are lacking
           all F420 biosynthetic capability save the final
           side-chain polyglutamate attachment step (via the gene
           cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
           marine actinobacterium PHSC20C1 this cassette is in an
           apparent operon with the cofE gene and, in PHSC20C1,
           also with a F420-dependent glucose-6-phosphate
           dehydrogenase (TIGR03554). Based on these observations
           we propose that this ATP-binding protein is a component
           of an F420-0 (that is, F420 lacking only the
           polyglutamate tail) transporter.
          Length = 256

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 20/199 (10%)

Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISRDF 400
            RLI   +  T P GS   + GP+G GKS  L  + G L  + GT+         +SR  
Sbjct: 13  GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-- 70

Query: 401 IEKFSAQIGYLSQHCSL-FPISITENIILSH-------DQNSLHIAQKTAKIVGCHEDIL 452
               + ++  + Q      P+++ + + L           +S H A    + +   E + 
Sbjct: 71  -RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE-LS 128

Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512
            L +   +T    E      Q++ ++R +A  P +LL+DEP  HLD  A+     L+++ 
Sbjct: 129 HLADRDMSTLSGGE-----RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183

Query: 513 KENKKTIVIISHDPTIISM 531
                T+V   HD  + + 
Sbjct: 184 AATGVTVVAALHDLNLAAS 202


>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
           This model describes the ATP binding subunits of nitrate
           transport in bacteria and archaea. This protein belongs
           to the ATP-binding cassette (ABC) superfamily. It is
           thought that the two subunits encoded by ntrC and ntrD
           form the binding surface for interaction with ATP. This
           model is restricted in identifying ATP binding subunit
           associated with the nitrate transport. Nitrate
           assimilation is aided by other proteins derived from the
           operon which among others include products of ntrA - a
           regulatory protein; ntrB - a hydropbobic transmembrane
           permease and narB - a reductase.
          Length = 230

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 47/181 (25%), Positives = 92/181 (50%), Gaps = 12/181 (6%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
           + ++ TI +G    + G SGCGKS  L  + GL     G +    +QI+    ++     
Sbjct: 2   KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57

Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK--IVGCHEDILSLKNGYQTTYCSD 465
             + Q+ SL P +++ ENI L+ D+  L    K+ +  IV  H  ++ L           
Sbjct: 58  -VVFQNYSLLPWLTVRENIALAVDR-VLPDLSKSERRAIVEEHIALVGLTEAADKR--PG 113

Query: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TLLKQFKENKKTIVIISH 524
           ++   + Q++ ++R ++  P +LL+DEP   LD   + N    L++ ++E++ T+++++H
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173

Query: 525 D 525
           D
Sbjct: 174 D 174


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 64.2 bits (156), Expect = 8e-11
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 25/221 (11%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDFIE-- 402
           +++  I E     + GPSGCGKS FL C   M  L++  K  G +    + I    ++  
Sbjct: 22  DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81

Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
           +   ++G + Q  + FP+SI +N+      + +   ++  KIV       +LK       
Sbjct: 82  ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVE-----WALKKAALWDE 136

Query: 463 CSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
             D++  + +       Q++ ++R IA  P ++LMDEP   LD  +      L+ + K  
Sbjct: 137 VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-K 195

Query: 516 KKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553
           + TIVI++H+    S +SD++  F  + G L  F  T+ IF
Sbjct: 196 EYTIVIVTHNMQQASRVSDYTAFF--LMGDLIEFNKTEKIF 234


>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
          Length = 306

 Score = 64.1 bits (156), Expect = 9e-11
 Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 8/193 (4%)

Query: 336 IVFRDKKTS---RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG 392
           I FR+ +     +L+   LSF +  G C  + GP+G GK+  L  +LGL   + G+IS  
Sbjct: 8   IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67

Query: 393 DRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451
              +          ++G + Q  +L P  ++ EN+++      L  A   A +    E  
Sbjct: 68  GEPVPSR-ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE-F 125

Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
             L+N         E+   + +++ L+R + N+P +L++DEP   LD +A++  +  L+ 
Sbjct: 126 AKLENKADAKV--GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183

Query: 512 FKENKKTIVIISH 524
                KTI++ +H
Sbjct: 184 LLARGKTILLTTH 196


>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 45/244 (18%)

Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL-----EKGTI 389
           N  F D      I +N++  IP+ S   + GPSGCGKS F+  +  +  L      +G I
Sbjct: 10  NTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI 65

Query: 390 SFGDRQISRDFIE--KFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQK 440
                 I    ++  +   ++G + Q  + FP SI +N+          D++ +    ++
Sbjct: 66  YLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEE 125

Query: 441 TAKIVGCHEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDE 492
           + K     +++        L L  G Q             Q++ ++R IA +P ++LMDE
Sbjct: 126 SLKAAALWDEVKDKLDKSALGLSGGQQ-------------QRLCIARTIAVSPEVILMDE 172

Query: 493 PLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLF--GLT 549
           P   LD  +      L+ + K    TIVI++H+      +S ++  F  + G +   GLT
Sbjct: 173 PCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFF--LNGEIIESGLT 229

Query: 550 QDIF 553
             IF
Sbjct: 230 DQIF 233


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 35/206 (16%)

Query: 355 IPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDFIE--KFSAQ 407
           IP        GPSGCGKS  L C   M  L+   K  G + + DR I    I   K   Q
Sbjct: 43  IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102

Query: 408 IGYLSQHCSLFPISITENIILSHDQNS--------LHIAQKTAKIVGCHEDIL-----SL 454
           +G + Q  + FP SI ENI  +   N         +  + + A I    +D L     +L
Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTAL 162

Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
             G Q   C             ++R IA  P +LLMDEP   LD  +      L  + KE
Sbjct: 163 SGGQQQRLC-------------IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209

Query: 515 NKKTIVIISHDPTIIS-MSDFSLIFH 539
            + TI++++H+    S ++D++  F+
Sbjct: 210 -QYTIIMVTHNMQQASRVADWTAFFN 234


>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
           protein NodI.  This model does not recognize the highly
           divergent NodI from Azorhizobium caulinodans.
          Length = 303

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 43/182 (23%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI-SRDFIEK 403
           +++  +LSFTI  G C  + GP+G GKS     +LG+++ ++G I+     + SR  + +
Sbjct: 17  KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76

Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
               IG + Q  +L P  ++ EN+++      +   ++   ++    +   L++      
Sbjct: 77  --VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS-TREIEAVIPSLLEFARLESKADVRV 133

Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522
               +   + +++ L+R + N+P +L++DEP   LD  A++  +  L+      KTI++ 
Sbjct: 134 A--LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191

Query: 523 SH 524
           +H
Sbjct: 192 TH 193


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 12/216 (5%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTISFGDRQISRDFIEK 403
           +++S   PE S   I GPSGCGKS  L  +  +  L       G I   D  I    ++ 
Sbjct: 21  KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80

Query: 404 FSAQ--IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
            S +  +G + Q  + FP +SI +N+I  +  N      +  +IV      ++L +  + 
Sbjct: 81  VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140

Query: 461 TYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
              S+ +  +  Q+ RL  +R IA  P ++LMDEP   LD  +      L+++ KE K T
Sbjct: 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYT 199

Query: 519 IVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIF 553
           I+I++H+      +SD++  F+       G T+ IF
Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235


>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 38/199 (19%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLL--TLEKGTISFGDRQISR---DFI 401
           ++S    +     + GPSGCGKS FL C   M  L+     +G I      I     D +
Sbjct: 24  DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83

Query: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSL----HIAQKTAKIVG----------- 446
           E    ++G + Q  + FP SI EN+      N +    ++A++  + +            
Sbjct: 84  E-LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR 142

Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
            HE  L L  G Q             Q++ ++R +A  P +LLMDEP   LD  A     
Sbjct: 143 LHESALGLSGGQQ-------------QRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189

Query: 507 TLLKQFKENKKTIVIISHD 525
            L+ + K    TI+I++H+
Sbjct: 190 ELIHELKAR-YTIIIVTHN 207


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes.
          Length = 571

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 28/306 (9%)

Query: 248 SSILGIGAWLVIHQKLSAGAIIATSIITARA--MAPLEQIINSKKSLNVGLKSLKYLINL 305
           + +L I  +      L+AG    T+ ITA    + PL+ + N    +  GL + + L  L
Sbjct: 253 AVVLFIALFQAQAGSLTAGDF--TAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTL 310

Query: 306 NDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAG 365
            D     ++     E     +       +N+ FR     R    ++S  I  G    + G
Sbjct: 311 LDSPPEKDTGTRAIERARGDVE-----FRNVTFRYPGRDRPALDSISLVIEPGETVALVG 365

Query: 366 PSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITEN 425
            SG GKS  +  +      + G I      ++   +     Q+  +SQ   LF  +I  N
Sbjct: 366 RSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425

Query: 426 IILSH-DQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV-------QKIRL 477
           I     +Q      ++        + +  L  G  T      I  N V       Q++ +
Sbjct: 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT-----PIGENGVLLSGGQRQRLAI 480

Query: 478 SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI------ISHDPTIISM 531
           +R +  +  IL++DE    LDNE++      L++  + + T+VI      I     I+ M
Sbjct: 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540

Query: 532 SDFSLI 537
            D  ++
Sbjct: 541 DDGRIV 546


>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 249

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 35/197 (17%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQISRDF-IE 402
           ++++  IP      + GPSGCGKS  L C   M  L+   K  G ++     I  +  + 
Sbjct: 20  KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79

Query: 403 KFSAQIGYLSQHCSLFPISITENIILS------HDQNSL-HIAQKTAKIVGCHEDI---- 451
               ++G + Q  + FP+SI EN+          D+  L  + +++ +     +++    
Sbjct: 80  DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL 139

Query: 452 ----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
                 L  G Q             Q++ ++R IA  P ++LMDEP   LD  A +    
Sbjct: 140 KSHAFGLSGGQQ-------------QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186

Query: 508 LLKQFKENKKTIVIISH 524
           L+++ K+N  TIVI++H
Sbjct: 187 LMEELKKN-YTIVIVTH 202


>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
            Members of this family are the PhnL protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated C-P lysase complex. This protein
           (PhnL) and the adjacent-encoded PhnK (TIGR02323)
           resemble transporter ATP-binding proteins but are
           suggested, based on mutatgenesis studies, to be part of
           this C-P lyase complex rather than part of a transporter
           per se.
          Length = 224

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 26/211 (12%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR-------QIS-R 398
           + +N+S T+  G C  ++GPSG GKS  L  +      + G I            Q S R
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82

Query: 399 DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN- 456
           + +E     IGY+SQ   + P +S  E +     +  +      A+      ++L+  N 
Sbjct: 83  EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARA----RELLARLNI 138

Query: 457 ------GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
                     T+   E      Q++ ++R    +  ILL+DEP   LD   +     L+ 
Sbjct: 139 PERLWHLPPATFSGGE-----QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193

Query: 511 QFKENKKTIVIISHDPTII-SMSDFSLIFHP 540
           + K     ++ I HD  +   ++D  +   P
Sbjct: 194 EAKARGAALIGIFHDEEVRELVADRVMDVTP 224


>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 38/219 (17%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
             I A+++ F       L  + +S  I E S     GPSGCGKS FL     +  L   T
Sbjct: 2   VKIDARDVNFWYGDFHAL--KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59

Query: 389 ISFGDRQIS-RDF------IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSL------ 435
              G+ +I  R+       +++    +G + Q  + FP SI EN+      N +      
Sbjct: 60  RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119

Query: 436 -HIAQKTAKIVGCHEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPA 486
               ++T K     +++         +L  G Q   C             ++R +A +P+
Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC-------------IARAMAVSPS 166

Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
           +LLMDEP   LD  +      L+ + K    TIVI++H+
Sbjct: 167 VLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHN 204


>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 207

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 21/189 (11%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
           R++   LSFT+  G   ++ GP+G GK+  L  + GLL    GTI      I        
Sbjct: 15  RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---DPDV 71

Query: 405 SAQIGYLSQHCSLFP-ISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
           +    YL    ++ P +++ EN+           L IA    + VG    +  L  GY +
Sbjct: 72  AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAA-ALEAVGLA-PLAHLPFGYLS 129

Query: 461 TYCSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
                       QK R  L+R++ +N  I ++DEP   LD  A   F  L++        
Sbjct: 130 AG----------QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179

Query: 519 IVIISHDPT 527
           ++  +H P 
Sbjct: 180 VIAATHIPL 188


>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
           Provisional.
          Length = 340

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 11/211 (5%)

Query: 317 SKKEPISMRLSNNTITAKNIV--FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
             K  I   +S   I    +   + DK     +   LSFT+  G C  + GP+G GKS  
Sbjct: 28  EAKASIPGSMSTVAIDLAGVSKSYGDK----AVVNGLSFTVASGECFGLLGPNGAGKSTI 83

Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQN 433
              +LG+ + + G I+     +         A+IG + Q  +L    ++ EN+++     
Sbjct: 84  ARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142

Query: 434 SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493
            +   ++   ++    +   L++         ++   + +++ L+R + N+P +L++DEP
Sbjct: 143 GMS-TREIEAVIPSLLEFARLESKADARVS--DLSGGMKRRLTLARALINDPQLLILDEP 199

Query: 494 LYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
              LD  A++  +  L+      KTI++ +H
Sbjct: 200 TTGLDPHARHLIWERLRSLLARGKTILLTTH 230


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 24/197 (12%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--------R 398
           + + +   IP+     + GPSGCGKS  L     LL L +     G+ ++          
Sbjct: 19  VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78

Query: 399 DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQK--------TAKIVGCHE 449
           D IE    ++G + Q+ + FP ++I +N+ +    N L  ++K          K     +
Sbjct: 79  DPIE-VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD 137

Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509
           ++    N Y +     +      Q++ ++R +A  P ILLMDEP  ++D         LL
Sbjct: 138 EVKDRLNDYPSNLSGGQ-----RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192

Query: 510 KQFKENKKTIVIISHDP 526
            + K  + TIV+++H P
Sbjct: 193 FELK-KEYTIVLVTHSP 208


>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 28/229 (12%)

Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
           ++  +  I  +N+ F    +     +N+SF I EG    I G +G GKS     + GLL 
Sbjct: 1   IKNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK 60

Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT---------ENIILSHDQNS 434
            + G I      IS++ +++   +IG + Q+     I  T         EN  +   +  
Sbjct: 61  PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK 120

Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLM 490
             I    AK VG  ED L            D+ P N+     Q++ ++ ++A NP I++ 
Sbjct: 121 -DIIDDLAKKVGM-EDYL------------DKEPQNLSGGQKQRVAIASVLALNPEIIIF 166

Query: 491 DEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSDFSLIF 538
           DE    LD + K     ++    K  KKT++ I+HD     ++D  ++F
Sbjct: 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF 215


>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 257

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS-------FGDRQIS 397
           + I ++++  IP  S   I GPSG GKS  L  +  L+ +    I        FG     
Sbjct: 23  KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82

Query: 398 RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN 456
            D I K   ++G + Q  + FP +SI +NI      + +   ++  KIV   E+ L    
Sbjct: 83  IDAI-KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIV---EECLRKVG 138

Query: 457 GYQTTYCSDEIPYNIV-----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
            ++  Y     P + +     Q++ ++R +A  P +LLMDEP   +D         L+ +
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198

Query: 512 FKENKKTIVIISHDP 526
            K N+  IVI+SH+P
Sbjct: 199 LK-NEIAIVIVSHNP 212


>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 20/188 (10%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI----SRDFIEKFS 405
           N+SF + EGS   + G +G GKS  +     LL    GTI+     I        ++K  
Sbjct: 25  NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84

Query: 406 AQIGYLSQ--HCSLFPISITENIILS------HDQNSLHIAQKTAKIVGCHEDILSLKNG 457
            ++  + Q     LF  ++ +++          +  +   A K  K VG  ED++S K+ 
Sbjct: 85  KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSP 143

Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
           +       E+    ++++ ++ ++A  P IL +DEP   LD E +     L K +++   
Sbjct: 144 F-------ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH 196

Query: 518 TIVIISHD 525
           T+++++H+
Sbjct: 197 TVILVTHN 204


>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 31/230 (13%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL------LTLEKGTISFGDRQISR 398
           +   +N++  I +     I GPSGCGK+  L  +  +        +E G I F  + I  
Sbjct: 16  KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE-GKIYFKGQDIYD 74

Query: 399 DFIE--KFSAQIGYLSQHCSLFPISITENIILS---HDQNSLH----IAQKTAKIVGCHE 449
             ++  ++  ++G + Q  + FP+SI +N+      H   S H    I +++ K     +
Sbjct: 75  PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134

Query: 450 DILSL--KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
           ++ S   K G         +     Q++ ++R +A  P ++L+DEP   LD  A      
Sbjct: 135 EVKSELNKPGT-------RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187

Query: 508 LLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIFK 554
           LL++  EN  TIVI++H+    I ++D+  I    +G L  +G T++I +
Sbjct: 188 LLEELSEN-YTIVIVTHNIGQAIRIADY--IAFMYRGELIEYGPTREIVE 234


>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 271

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 36/199 (18%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTISFGDRQI--SRDFI 401
           +N++  I E     I GPSGCGKS ++     M+ L+   K  G I + D+ I      +
Sbjct: 41  KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100

Query: 402 EKFSAQIGYLSQHCSLFPISITENII-------LSHDQNSLHIAQKTAKIVGC------- 447
           E+    +G + Q  + FP SI +N+        +   +    I +K+ +           
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDR 160

Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
            H++   L  G Q             Q++ ++R +A  P ++LMDEP   LD  +     
Sbjct: 161 LHDNAYGLSGGQQ-------------QRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207

Query: 507 TLLKQFKENKKTIVIISHD 525
            L+++ K+   +I+I++H+
Sbjct: 208 ELVQELKK-DYSIIIVTHN 225


>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
           Provisional.
          Length = 377

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
           ++S TI +G    + G SGCGKS  L  + G      G I      +S   +  +   I 
Sbjct: 37  DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPIN 94

Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468
            + Q  +LFP +++ +NI     Q+ L  A+  +++     ++L L +  +    +   P
Sbjct: 95  MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRV----NEMLGLVHMQEF---AKRKP 147

Query: 469 YNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523
           + +     Q++ L+R +A  P +LL+DEP+  LD + ++     +    E    T V+++
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207

Query: 524 HD 525
           HD
Sbjct: 208 HD 209


>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
           subunit; Provisional.
          Length = 400

 Score = 59.3 bits (143), Expect = 3e-09
 Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 9/192 (4%)

Query: 340 DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR- 398
           +K    L  ++ S  I EG   +I G SG GKS  +  +  L+   +G +      I++ 
Sbjct: 36  EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI 95

Query: 399 ---DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL 454
              +  E    +I  + Q  +L P +++ +N     +   ++  ++  K +     +  L
Sbjct: 96  SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-GL 154

Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TLLKQFK 513
           +N Y  +Y  DE+   + Q++ L+R +A NP ILLMDE    LD   +      L+K   
Sbjct: 155 EN-YAHSY-PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212

Query: 514 ENKKTIVIISHD 525
           ++++TIV ISHD
Sbjct: 213 KHQRTIVFISHD 224


>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 286

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 21/192 (10%)

Query: 363 IAGPSGCGKSNFLLCMLGLLTL-----EKGTISFGDRQISRDFIEK--FSAQIGYLSQHC 415
           I GPSGCGKS FL  +  +  L       G + F    I   F ++     +IG + Q  
Sbjct: 70  IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129

Query: 416 SLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--- 472
           + FP SI +NI      + ++  ++  +IV       SL+        SD +  N +   
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALGLS 184

Query: 473 ----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTI 528
               Q++ ++R +A  P ILL+DEP   LD +A      L+++ +    TI+I++H+   
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQQ 243

Query: 529 IS-MSDFSLIFH 539
            S +SD+++ F+
Sbjct: 244 ASRVSDYTMFFY 255


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
           (MRP).  This model describes multi drug
           resistance-associated protein (MRP) in eukaryotes. The
           multidrug resistance-associated protein is an integral
           membrane protein that causes multidrug resistance when
           overexpressed in mammalian cells. It belongs to ABC
           transporter superfamily. The protein topology and
           function was experimentally demonstrated by epitope
           tagging and immunofluorescence. Insertion of tags in the
           critical regions associated with drug efflux, abrogated
           its function. The C-terminal domain seem to highly
           conserved.
          Length = 1522

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 61/284 (21%), Positives = 116/284 (40%), Gaps = 33/284 (11%)

Query: 282 LEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDK 341
           L  +I+S    +V LK L+  ++  +    L     ++  I      N+IT  N  F   
Sbjct: 593 LPMVISSIVQASVSLKRLRIFLSHEE----LEPDSIERRTIKPG-EGNSITVHNATFTWA 647

Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFI 401
           +        ++F+IPEG+   + G  GCGKS+ L  +L  +   +G +            
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH----------- 696

Query: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461
                 + Y+ Q   +   S+ ENI+     N  +  Q+  +      D+  L +G +T 
Sbjct: 697 --MKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY-QQVLEACALLPDLEILPSGDRTE 753

Query: 462 YCSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYT-------LLKQF 512
                +  +  QK R  L+R + +N  I L D+PL  +D     + +        +LK  
Sbjct: 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN- 812

Query: 513 KENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIFKFN 556
               KT ++++H  + +   D  ++    + S  G  Q++ + +
Sbjct: 813 ----KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD 852



 Score = 34.5 bits (79), Expect = 0.071
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 10/196 (5%)

Query: 334  KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393
            +N   R ++   L+ ++++ TI  G    I G +G GKS+  L +  +    +G I    
Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347

Query: 394  RQISRDFIEKFSAQIGYLSQHCSLFPISITENI--ILSHDQNSLHIAQKTAKIVGCHEDI 451
              I++  +     +I  + Q   LF  S+  N+     +    +  A + A +      +
Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHL---KTFV 1404

Query: 452  LSLKNG--YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TL 508
             +L +   ++     + +     Q + L+R +     IL++DE    +D E  N    T+
Sbjct: 1405 SALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464

Query: 509  LKQFKENKKTIVIISH 524
              QF++   T++ I+H
Sbjct: 1465 RTQFEDC--TVLTIAH 1478


>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 241

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
           N I  K + +      + I +++S     G+   I GPSG GKS  +  +  L+   +G+
Sbjct: 2   NEIEFKEVSYSS--FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59

Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI----ILSHDQNSLHIAQKTAKI 444
           I      I    +     +IG + Q   LF  ++ +NI    +L  ++N     +    I
Sbjct: 60  ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV--DVEYYLSI 117

Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
           VG       L   Y T      +     Q++ ++R +ANNP +LL+DEP   LD  +   
Sbjct: 118 VG-------LNKEYATRDV-KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169

Query: 505 FYTLLKQFKENKK-TIVIISHD 525
              L+ + K     T++ I+H+
Sbjct: 170 IEELIVKLKNKMNLTVIWITHN 191


>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 305

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 51/234 (21%)

Query: 331 ITAKNIVFR-DKKTSRLI--CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
           I  KNIV   +KK    +    N+S  I +G    I G +G GK+ F+  +  LL  + G
Sbjct: 3   IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62

Query: 388 TISFGDRQISRD------------------------FIEKFSAQIGYLSQHC--SLFPIS 421
           TI +  +                              I++   ++G + Q     LF  +
Sbjct: 63  TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122

Query: 422 ITENIILS------HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--Q 473
           I ++II          + +   A K  ++VG  E  L               P+ +   Q
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL------------QRSPFELSGGQ 170

Query: 474 KIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
           K R  L+ I+A  P  L+ DEP   LD +       +     +  KTI++++HD
Sbjct: 171 KRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224


>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
           protein; Reviewed.
          Length = 375

 Score = 58.0 bits (141), Expect = 7e-09
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 40/235 (17%)

Query: 317 SKKEPISMRLSNNTITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
           SKK        +  +  + I   F  K+    +  NL  TI  G    + GPSGCGK+  
Sbjct: 1   SKKLNKQPSSLSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTV 56

Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQN 433
           L  + G  T + G I    + I+    E     +  + Q  +LFP +++ EN+       
Sbjct: 57  LRLIAGFETPDSGRIMLDGQDITHVPAEN--RHVNTVFQSYALFPHMTVFENVAF----- 109

Query: 434 SLHIAQKT--AKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAI 487
            L + QKT  A+I     + L +    Q    +   P+ +     Q++ ++R + N P +
Sbjct: 110 GLRM-QKTPAAEITPRVMEALRM---VQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165

Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKK--------TIVIISHD-PTIISMSD 533
           LL+DE L  LD       Y L KQ +   K        T V ++HD    ++MSD
Sbjct: 166 LLLDESLSALD-------YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD 213


>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 265

 Score = 57.7 bits (139), Expect = 7e-09
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407
           +N++  + E     + GPSGCGKS FL C   +  L  G    G+  +  D +   S + 
Sbjct: 33  KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92

Query: 408 --------IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459
                   I  + Q  + FP SI EN+        L I     + +       +L+N   
Sbjct: 93  DPIEVRMRISMVFQKPNPFPKSIFENVAYG-----LRIRGVKRRSILEERVENALRNAAL 147

Query: 460 TTYCSD---EIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512
                D   ++ +N+     Q++ ++R +A +P ILL DEP   LD  A  +   L+   
Sbjct: 148 WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL 207

Query: 513 KENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIF 553
           K NK TI+I++H+      +SD++   +  +   FG T  IF
Sbjct: 208 K-NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248


>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 276

 Score = 57.8 bits (139), Expect = 8e-09
 Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 54/240 (22%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----------GTISFGD 393
           + +   +S   P  +   + GP+G GK+ FL       TL +           G +  G 
Sbjct: 34  KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLR------TLNRMNDKVSGYRYSGDVLLGG 87

Query: 394 RQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSL-------HIAQKTAKI 444
           R I   RD +E F  ++G L Q  + FP+SI +N++     + L        +AQ     
Sbjct: 88  RSIFNYRDVLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE 146

Query: 445 VGCHE---DILS-----LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496
           VG  +   D LS     L  G Q   C             L+R +A NP +LL+DEP   
Sbjct: 147 VGLWDAVKDRLSDSPFRLSGGQQQLLC-------------LARTLAVNPEVLLLDEPTSA 193

Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLF--GLTQDIF 553
           LD          ++   + + T++I++H+      +SD + +F    G L   G T+ +F
Sbjct: 194 LDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALF--FDGRLVEEGPTEQLF 250


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score = 57.5 bits (140), Expect = 8e-09
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 48/219 (21%)

Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE---- 385
           ++T  N+ F      + + + LS  I  G    + G +GCGKS     +L LLT      
Sbjct: 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST----LLQLLTRAWDPQ 393

Query: 386 KGTISFGDRQISRDFIEK-FSAQIGYLSQHCSLFPISITENIIL----SHDQNSLHIAQK 440
           +G I    + I+ D+ E      I  +SQ   LF  ++ +N++L    + D+  + + Q+
Sbjct: 394 QGEILLNGQPIA-DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQ 452

Query: 441 TAKIVGCHEDILS---------------LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNP 485
               VG  E +L                L  G Q             +++ ++R + ++ 
Sbjct: 453 ----VGL-EKLLEDDKGLNAWLGEGGRQLSGGEQ-------------RRLGIARALLHDA 494

Query: 486 AILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
            +LL+DEP   LD E +     LL +  +N KT+++I+H
Sbjct: 495 PLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITH 532


>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 258

 Score = 57.5 bits (140), Expect = 8e-09
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 43/219 (19%)

Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
            + A+N+  R     R +  ++S T+  G    I GP+G GKS  L  + G L+ + G +
Sbjct: 2   MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59

Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSL-FPISITENIIL------SHDQNSLHIAQKTA 442
               R ++     + + +   L QH SL FP ++ E + +              +     
Sbjct: 60  RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119

Query: 443 KIVGC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA------NNPAILLMDE 492
             V        D   L  G Q             Q+++L+R++A        P  LL+DE
Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQ-------------QRVQLARVLAQLWEPDGPPRWLLLDE 166

Query: 493 P-----LYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525
           P     L H     +++   L +Q   E    ++++ HD
Sbjct: 167 PTSALDLAH-----QHHVLRLARQLAHERGLAVIVVLHD 200


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 37/223 (16%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRD-FIEKFS 405
           +++    +G    I G +G GKS  +  +  LL    GT++  D  I   ++D +I    
Sbjct: 25  DVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR 84

Query: 406 AQIGYLSQ--HCSLFPISITENIILSHDQNSLHIAQKTAKI------VGCHEDILSLKNG 457
            +IG + Q     LF  ++   II       +++ +           +G   D++S    
Sbjct: 85  KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS-- 142

Query: 458 YQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
                     P+ +    ++KI +  I+A NP I+++DEP   LD ++K     LLK  +
Sbjct: 143 ----------PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192

Query: 514 -ENKKTIVIISHD--------PTIISMSDFSLIFHPIQGSLFG 547
            +  KTI+++SHD          +I M + S++       LF 
Sbjct: 193 TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235


>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 28/212 (13%)

Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
              I  ++I FR    +    +++SF++ EG    I G +G GKS     + GLL  E G
Sbjct: 3   EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT---------ENIILSHDQNSLHIA 438
           TI+ G   +S + +     Q+G + Q+     +  T         ENI +  ++    + 
Sbjct: 63  TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV- 121

Query: 439 QKTAKIVG----CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494
            +  + VG     + +   L  G +             Q++ ++ ++A  P I+++DE  
Sbjct: 122 DQALRQVGMEDFLNREPHRLSGGQK-------------QRVAIAGVLALQPDIIILDEAT 168

Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVI-ISHD 525
             LD   +      ++Q KE K   V+ I+HD
Sbjct: 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHD 200


>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 329

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 27/243 (11%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
           N    +N  F     ++ +  +L+  I         GPSGCGKS FL  +  L  L +GT
Sbjct: 79  NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT 138

Query: 389 ISFGD----------RQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIA 438
              G+          ++IS     +   +IG + Q  + F +SI +N+      N ++  
Sbjct: 139 SHEGEIYFLGTNTRSKKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR 195

Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPY--NIV-----QKIRLSRIIANNPAILLMD 491
           +   KIV       SLK+        D++    N +     Q++ ++R IA  P +LLMD
Sbjct: 196 KILEKIVE-----KSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250

Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQ 550
           EP   LD  A      L+ + K+ K +I+I++H       +SD ++ F+       G T+
Sbjct: 251 EPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309

Query: 551 DIF 553
            IF
Sbjct: 310 TIF 312


>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
           protein; Provisional.
          Length = 265

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 29/198 (14%)

Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403
              + +NL+  IP+G    I GP+GCGKS  L  +  L+T   G +      I     ++
Sbjct: 19  KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78

Query: 404 FSAQIGYLSQHCSLFPISITENIILS---------------HDQNSLHIAQKTAKIVGCH 448
            + +IG L+Q+ +  P  IT   +++                D+ ++  A +   I    
Sbjct: 79  VARRIGLLAQNATT-PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA 137

Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
           +  +   +G Q             Q+  ++ ++A   AI+L+DEP   LD   + +   L
Sbjct: 138 DQSVDTLSGGQR------------QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185

Query: 509 LKQF-KENKKTIVIISHD 525
           L +  +E   T+  + HD
Sbjct: 186 LSELNREKGYTLAAVLHD 203


>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.  This
           model describes the cyt c biogenesis protein encoded by
           ccmA in bacteria. An exception is, an arabidopsis
           protein. Quite likely this is encoded by an organelle.
           Bacterial c-type cytocromes are located on the
           periplasmic side of the cytoplasmic membrane. Several
           gene products encoded in a locus designated as 'ccm' are
           implicated in the transport and assembly of the
           functional cytochrome C. This cluster includes genes:
           ccmA;B;C;D;E;F;G and H. The posttranslational pathway
           includes the transport of heme moiety, the secretion of
           the apoprotein and the covalent attachment of the heme
           with the apoprotein. The proteins ccmA and B represent
           an ABC transporter; ccmC and D participate in heme
           transfer to ccmE, which function as a periplasmic heme
           chaperone. The presence of ccmF, G and H is suggested to
           be obligatory for the final functional assembly of
           cytochrome c.
          Length = 198

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
           R++ + LSFT+  G    + GP+G GK+  L  + GLL  + G + +    ++    E  
Sbjct: 13  RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE-P 71

Query: 405 SAQIGYLSQHCSLFP-ISITENI-----ILSHDQNSLHIAQKTAKIVGCHEDIL--SLKN 456
              I YL     L P +S  EN+     I    Q ++  A     + G  ED+    L  
Sbjct: 72  HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSA 130

Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
           G Q             +++ L+R+  +   + ++DEP   LD         LL+      
Sbjct: 131 GQQ-------------RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177

Query: 517 KTIVIISHDP 526
             +++ +H  
Sbjct: 178 GIVLLTTHQD 187


>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
          Length = 222

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 35/211 (16%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR------ 398
           R   Q ++F +  G    + G SG GKS  L  + G+     G I F    I+R      
Sbjct: 15  RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREV 74

Query: 399 DFIEKFSAQIGYLSQ-HCSLFPISITENIIL-------SHDQNSLHIAQKTAKIVGCHED 450
            F+ +   QIG + Q H  L   ++ +N+ +       S D     ++    K VG  + 
Sbjct: 75  PFLRR---QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK-VGLLDK 130

Query: 451 I----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
                + L  G Q             Q++ ++R + N PA+LL DEP  +LD+       
Sbjct: 131 AKNFPIQLSGGEQ-------------QRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177

Query: 507 TLLKQFKENKKTIVIISHDPTIISMSDFSLI 537
            L ++F     T+++ +HD  +IS   + ++
Sbjct: 178 RLFEEFNRVGVTVLMATHDIGLISRRSYRML 208


>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 36/201 (17%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIE---- 402
           + +N++   PE     I GPSGCGKS  L  +  +  +  G    G   +  + I     
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78

Query: 403 ---KFSAQIGYLSQHCSLFPISITENIILSHD--------------QNSLHIAQKTAKIV 445
                  ++G + Q  + FP SI +N+                   + SL  A    ++ 
Sbjct: 79  DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138

Query: 446 -GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
              H+  L+L  G Q   C             ++R++A  P ++LMDEP   LD  +   
Sbjct: 139 DNLHKSGLALSGGQQQRLC-------------IARVLAIEPEVILMDEPCSALDPVSTMR 185

Query: 505 FYTLLKQFKENKKTIVIISHD 525
              L+++ K+N  TI I++H+
Sbjct: 186 IEELMQELKQN-YTIAIVTHN 205


>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
           protein.  Phosphonates are a class of
           phosphorus-containing organic compound with a stable
           direct C-P bond rather than a C-O-P linkage. A number of
           bacterial species have operons, typically about 14 genes
           in size, with genes for ATP-dependent transport of
           phosphonates, degradation, and regulation of the
           expression of the system. Members of this protein family
           are the ATP-binding cassette component of tripartite ABC
           transporters of phosphonates.
          Length = 243

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFIEKFSA 406
           N++  I  G    I GPSG GKS  L C+  L+    G+I      I       + K   
Sbjct: 20  NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79

Query: 407 QIGYLSQHCSLFP-ISITENII---LSHDQN-----SLHIAQKTAKIVGCHEDILSLKNG 457
           +IG + QH +L   +++ EN++   L +             +   + +   E +      
Sbjct: 80  RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA 139

Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENK 516
           YQ    +D++     Q++ ++R +A  P ++L DEP+  LD +        LK+  KE+ 
Sbjct: 140 YQR---ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196

Query: 517 KTIVIISHD 525
            T++I  H 
Sbjct: 197 ITVIINLHQ 205


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 28/191 (14%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF----IEKFS 405
           +++ TI +GS     G +G GKS  +  + GL    +G++   D  I+       I++  
Sbjct: 25  DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84

Query: 406 AQIGYLSQHCSLFPIS-ITENIILSH----DQN---SLHIAQKTAK----IVGCHEDILS 453
            ++G + Q    FP S + E  +L       QN   S   A+  A+    +VG  E +  
Sbjct: 85  KKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140

Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
            KN +       E+    ++++ ++ I+A  P IL++DEP   LD + +    TL K+  
Sbjct: 141 -KNPF-------ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH 192

Query: 514 ENKKTIVIISH 524
           ++  TIV+++H
Sbjct: 193 QSGMTIVLVTH 203


>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
           regulator (CFTR).  The model describes the cystis
           fibrosis transmembrane conductor regulator (CFTR) in
           eukaryotes. The principal role of this protein is
           chloride ion conductance. The protein is predicted to
           consist of 12 transmembrane domains. Mutations or
           lesions in the genetic loci have been linked to the
           aetiology of asthma, bronchiectasis, chronic obstructive
           pulmonary disease etc. Disease-causing mutations have
           been studied by 36Cl efflux assays in vitro cell
           cultures and electrophysiology, all of which point to
           the impairment of chloride channel stability and not the
           biosynthetic processing per se.
          Length = 1490

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406
           + +N+SF + +G    +AG +G GKS+ L+ ++G L   +G I             K S 
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-------------KHSG 487

Query: 407 QIGYLSQHCSLFPISITENII--LSHDQNSLHIAQKTAKIVGCH--EDILSLKNGYQTTY 462
           +I +  Q   + P +I +NII  LS+D+      + T+ I  C   EDI       +T  
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDE-----YRYTSVIKACQLEEDIALFPEKDKTVL 542

Query: 463 CSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLD-NEAKNNFYTLLKQFKENKKTI 519
               I  +  Q+ R  L+R +  +  + L+D P  HLD    K  F + L +   NK  I
Sbjct: 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRI 602

Query: 520 VIIS 523
           ++ S
Sbjct: 603 LVTS 606



 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 30/187 (16%)

Query: 327  SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
            S   +  + +  +  +  R + Q+LSF++  G    + G +G GKS  L  +L LL+ E 
Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE- 1272

Query: 387  GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVG 446
            G I       +   ++ +    G + Q   +F  +  +N+   ++Q S     K A+ VG
Sbjct: 1273 GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVG 1331

Query: 447  CHEDILS---------------LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMD 491
                I                 L NG++   C             L+R I +   ILL+D
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC-------------LARSILSKAKILLLD 1378

Query: 492  EPLYHLD 498
            EP  HLD
Sbjct: 1379 EPSAHLD 1385


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 32/204 (15%)

Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR---QIS 397
            K    +  N+S +I EG    + G SGCGKS     +LGL    +GT+SF  +   Q+ 
Sbjct: 20  AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79

Query: 398 RDFIEKFSAQIGYLSQHC--SLFPISITENII---LSHDQNSLHIAQKTAKI------VG 446
           R     F   +  + Q    ++ P      II   L H   SL  +++ A+I      VG
Sbjct: 80  RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH-LTSLDESEQKARIAELLDMVG 138

Query: 447 CHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
              +              D++P  +    +Q+I ++R +A  P ++++DE + +LD   +
Sbjct: 139 LRSEDA------------DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186

Query: 503 NNFYTLLKQFKENKKT-IVIISHD 525
                LL++ ++   T  + I+HD
Sbjct: 187 AVILELLRKLQQAFGTAYLFITHD 210


>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
           YrbF; Provisional.
          Length = 269

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 22/223 (9%)

Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
             N +  + + F   + +R I  N+S T+P G    I GPSG GK+  L  + G +  + 
Sbjct: 4   VANLVDMRGVSFT--RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH 61

Query: 387 GTISFGDRQI---SRDFIEKFSAQIGYLSQHCSLFP-ISITENI---ILSHDQNSLHIAQ 439
           G I F    I   SR  +     ++  L Q  +LF  +++ +N+   +  H Q    +  
Sbjct: 62  GEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121

Query: 440 KTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499
            T   V    + + L+   +      E+   + ++  L+R IA  P +++ DEP    D 
Sbjct: 122 ST---VMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176

Query: 500 EAKNNFYTLLKQFKE-NKK---TIVIISHD-PTIISMSDFSLI 537
                   L+K   E N     T V++SHD P ++S++D + I
Sbjct: 177 ITMG---VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI 216


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 11/201 (5%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
            TI A+++         L    L+FT+P G    + GPSG GK++ L  +LG L  + G+
Sbjct: 348 VTIEAEDLEILSPDGKTL-AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GS 405

Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSH---DQNSLHIAQKTAKIV 445
           +     ++     E +   + ++ Q+  L   ++ +N++L +       L  A + A + 
Sbjct: 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWV- 464

Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNI--VQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
              E +  L  G  T         ++   Q++ L+R +     +LL+DEP   LD  ++ 
Sbjct: 465 --SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522

Query: 504 NFYTLLKQFKENKKTIVIISH 524
                L      ++T ++++H
Sbjct: 523 LVMQALNAAS-RRQTTLMVTH 542


>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
           protein LsrA; Provisional.
          Length = 510

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 23/213 (10%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQI 408
           N+S  +  G    +AG  G G++     + GL     G I    ++I+     ++ +  +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340

Query: 409 GYLS---QHCSLF-PISITENII-LSHDQNSLHI-AQKTAKIVGCHEDILSLKNGYQTTY 462
            YL    Q   L+    +  N+  L+H++    I   +   ++  +   L++K       
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------- 393

Query: 463 CSD-EIPYNIV-----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
            +  E     +     QK+ +++ +  +P +L++DEP   +D  A+N+ Y L++      
Sbjct: 394 FNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN 453

Query: 517 KTIVIISHD-PTIISMSDFSLIFHPIQGSLFGL 548
             ++ IS D   I  M+D  L+ H  QG + G 
Sbjct: 454 VAVLFISSDLEEIEQMADRVLVMH--QGEISGA 484



 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 17/180 (9%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG- 409
           + FT+  G    + G +G GKS  +  + G++  + GT+  G    +R    K + Q+G 
Sbjct: 30  IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK-AHQLGI 88

Query: 410 YL-SQHCSLFP-ISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
           YL  Q   LFP +S+ ENI+        +   + Q  A + GC    L L +   +   +
Sbjct: 89  YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-GCQ---LDLDSSAGSLEVA 144

Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
           D       Q + + R +  +  IL++DEP   L        ++ +++       IV ISH
Sbjct: 145 DR------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198


>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
           This model describes the energy-transducing ATPase
           subunit ThiQ of the ThiBPQ thiamine (and thiamine
           pyrophosphate) ABC transporter in several
           Proteobacteria. This protein is found so far only in
           Proteobacteria, and is found in complete genomes only if
           the ThiB and ThiP subunits are also found.
          Length = 213

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYL 411
              + +G    I GPSG GKS  L  + G +    G+I   D+  +   +  +   +  L
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSML 75

Query: 412 SQHCSLFP-ISITENIILS-HDQNSLHIAQK-----TAKIVGCHEDILSLKNGYQTTYCS 464
            Q  +LF  +++ +NI L  H    L+  Q+      A+ VG  + +  L          
Sbjct: 76  FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-------- 127

Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIIS 523
            ++     Q++ L+R +     ILL+DEP   LD   +     L+KQ   E ++T+++++
Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186

Query: 524 HDPT 527
           H  +
Sbjct: 187 HHLS 190


>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 246

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 32/224 (14%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEKGTISFGDRQISRDFIEKFSA 406
           +++  I +     + G SGCGKS FL C   M   +    G +    + +    +     
Sbjct: 20  DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79

Query: 407 QIGYLSQHCSLFPISITENI--------ILSHDQNSLHIAQKTAKIVGCHEDI------- 451
            +G + Q  ++F  SI ENI        ++ +      +     + VG  E++       
Sbjct: 80  NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139

Query: 452 -LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
            L+L  G Q   C             ++R +A  P +LL+DEP   LD  +      LLK
Sbjct: 140 ALALSGGQQQRLC-------------IARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186

Query: 511 QFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIFK 554
           +   N   I++  +      ++D++  FH  +   FG +++ F+
Sbjct: 187 ELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230


>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
           Provisional.
          Length = 582

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 70/290 (24%), Positives = 125/290 (43%), Gaps = 33/290 (11%)

Query: 259 IHQKLSAGAI--IATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSD 316
           +   L+AG I  + +S+I    M PL+ + N       G+ + + L  + D     +   
Sbjct: 275 VMDTLTAGTITVVFSSMIAL--MRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332

Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376
              E      +   I  +N+ F          +N++F IP G    + G SG GKS    
Sbjct: 333 RVIER-----AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKST--- 384

Query: 377 CMLGLLT----LEKGTISFGDRQISRDF-IEKFSAQIGYLSQHCSLFPISITENIIL-SH 430
            +  LLT    +++G I      + RD+ +     Q+  +SQ+  LF  +I  NI     
Sbjct: 385 -IANLLTRFYDIDEGEILLDGHDL-RDYTLASLRNQVALVSQNVHLFNDTIANNIAYART 442

Query: 431 DQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV-------QKIRLSRIIAN 483
           +Q S    ++ A++    + I  + NG  T      I  N V       Q+I ++R +  
Sbjct: 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTV-----IGENGVLLSGGQRQRIAIARALLR 497

Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533
           +  IL++DE    LD E++      L + ++N+ T ++I+H  + I  +D
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNR-TSLVIAHRLSTIEKAD 546


>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 269

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 62/227 (27%), Positives = 90/227 (39%), Gaps = 67/227 (29%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLL-----------CMLGLLTLEKGTISFGDRQIS 397
           +N+   IP G    + GPSGCGKS  L            C L      KG + F    + 
Sbjct: 30  KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL------KGRVLFDGTDLY 83

Query: 398 RDFIEKFSA--QIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI---- 451
              ++      +IG + Q  + FP SI ENI               A+I G   D+    
Sbjct: 84  DPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG------------ARINGYTGDMDELV 131

Query: 452 -LSLKNGYQTTYCSD---EIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLD----- 498
             SL+       C D   E  Y++     Q++ ++R IA  P ++LMDEP   LD     
Sbjct: 132 ERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191

Query: 499 ------NEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIF 538
                 +E K NF            TIVI++H+    + +SD +  F
Sbjct: 192 KIEETMHELKKNF------------TIVIVTHNMQQAVRVSDMTAFF 226


>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 43/215 (20%)

Query: 365 GPSGCGKSNFLLCM--LGLLTLE---KGTISFGDRQI---SRDFIEKFSAQIGYLSQHCS 416
           GPSG GKS  L  +  +  L  E    G+I +    I     D ++    +IG + Q  +
Sbjct: 38  GPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD-LRKEIGMVFQQPN 96

Query: 417 LFPISITENIILS------HDQNSLHIAQKTAKIVGC---------HEDILSLKNGYQTT 461
            FP+SI EN++         D+  L  A + +              H+  L L  G Q  
Sbjct: 97  PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ-- 154

Query: 462 YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI 521
                      Q++ ++R++A +P I+L+DEP   LD  +       L   K +  T+++
Sbjct: 155 -----------QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLL 202

Query: 522 ISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553
           ++      S +SD +  F  + G L  +  T+ +F
Sbjct: 203 VTRSMQQASRISDRTGFF--LDGDLIEYNDTKQMF 235


>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 31/176 (17%)

Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSL---FPIS 421
           GP+G GK+  L  +LGL+   KGT+        + +       IGY+ Q       FPIS
Sbjct: 13  GPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEFAWDFPIS 67

Query: 422 ITENIILSHDQNSLHIAQKTAKIVG-----CHEDILSLKNGYQT---TYCSD----EIPY 469
           +  + ++S               +G     C  D  ++++  +    T  +D    E+  
Sbjct: 68  V-AHTVMS----------GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116

Query: 470 NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
              Q++ ++R +A  P++LL+DEP   LD   +     L  +       I++ +HD
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172


>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 268

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 55/249 (22%)

Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC---MLGLLTLEK--GTI 389
           +I + +K+       ++S  I + +   + GPSGCGKS FL     M  L+   +  G I
Sbjct: 28  SIYYGEKRA----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83

Query: 390 SFGDRQISRDFIEKFS--AQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIV-- 445
            +    I    I   +   +IG + Q  + FP SI  NI      ++L  A +  K V  
Sbjct: 84  LYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNI-----THALKYAGERRKSVLD 138

Query: 446 ------------------GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAI 487
                               H   LSL  G Q             Q++ ++R +A  PA+
Sbjct: 139 EIVEESLTKAALWDEVKDRLHSSALSLSGGQQ-------------QRLCIARTLAMKPAV 185

Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL- 545
           LL+DEP   LD  +      L+ + KE   +I+I++H+    + +SD +  F  + G L 
Sbjct: 186 LLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQALRVSDRTAFF--LNGDLV 242

Query: 546 -FGLTQDIF 553
            +  T+ IF
Sbjct: 243 EYDQTEQIF 251


>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
          Length = 248

 Score = 54.9 bits (133), Expect = 6e-08
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 29/191 (15%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
           LS  +  G    + GP+G GKS  L  M GLL    G+I F  + +      + +    Y
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 411 LSQHCS-LFPISITENIILS-HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468
           LSQ  +  F + + + + L   D+            V      L L          D++ 
Sbjct: 74  LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEV-AE--ALGL---------DDKLG 121

Query: 469 YNIV-------QKIRLSRII-----ANNPA--ILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
            ++        Q++RL+ ++       NPA  +LL+DEP+  LD   +     LL +  +
Sbjct: 122 RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181

Query: 515 NKKTIVIISHD 525
               +V+ SHD
Sbjct: 182 QGIAVVMSSHD 192


>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
            Members of this protein family have two copies of the
           ABC transporter ATP-binding cassette, but are found
           outside the common ABC transporter operon structure that
           features integral membrane permease proteins and
           substrate-binding proteins encoded next to the
           ATP-binding cassette (ABC domain) protein. The member
           protein ChvD from Agrobacterium tumefaciens was
           identified as both a candidate to interact with VirB8,
           based on yeast two-hybrid analysis, and as an apparent
           regulator of VirG. The general function of this protein
           family is unknown.
          Length = 552

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 24/118 (20%)

Query: 305 LNDFTTLLNSSDSKKE-------PISMRLSNNTITAKNIV--FRDKKTSRLICQNLSFTI 355
           L  +  LL+    K+        P   RL +  I A+N+   F D    +L+  +LSF +
Sbjct: 290 LARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD----KLLIDDLSFKL 345

Query: 356 PEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ 413
           P G    + GP+G GKS     + G    + GTI  G+           + ++ Y+ Q
Sbjct: 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-----------TVKLAYVDQ 392



 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525
           L R++ + P +LL+DEP  HLD E+       L+Q  +E   T+V ++HD
Sbjct: 172 LCRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVAVTHD 217


>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
           Provisional.
          Length = 588

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 72/332 (21%)

Query: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAII-----ATSIITARAMAPLEQIINSKKSLNVG 295
           T+ M    +IL +GA LV   +L  G ++     AT +I       L+Q++         
Sbjct: 251 TITML---AILVLGAALVQKGQLRVGEVVAFVGFATLLI-----GRLDQVVA-------- 294

Query: 296 LKSLKYLIN--------LNDFTTLLNSSDSKKEPISMRLSNN---TITAKNIVFR-DKKT 343
                  IN        L +F  + ++    ++P            +   ++ F  D   
Sbjct: 295 ------FINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR 348

Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL----TLEKGTISFGDRQISRD 399
             +  +++SF    G    I GP+G GKS     ++ LL      + G I      I   
Sbjct: 349 QGV--EDVSFEAKPGQTVAIVGPTGAGKST----LINLLQRVFDPQSGRILIDGTDIRTV 402

Query: 400 FIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459
                   I  + Q   LF  SI +NI +     +    +  A+    H+ I    +GY 
Sbjct: 403 TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD 462

Query: 460 TTYCSDEIPYNIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
           T          +V            Q++ ++R +  +P IL++DE    LD E +     
Sbjct: 463 T----------VVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKA 512

Query: 508 LLKQFKENKKTIVIISHDPTIISMSDFSLIFH 539
            L +  + + T  II+H  + +  +D  L+F 
Sbjct: 513 ALDELMKGRTTF-IIAHRLSTVRNADRILVFD 543


>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
           Provisional.
          Length = 351

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 34/185 (18%)

Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
            N +  KNI  R    +  +  NL+ TI +G+   + GPSGCGK+  L  + G   LEK 
Sbjct: 4   KNFVVLKNITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG---LEKP 58

Query: 388 TISFGDRQISRDFIE-----KFSAQ---IGYLSQHCSLFP-ISITENI---ILSHDQNSL 435
           T    + QI   FI+       S Q   I  + Q  +LFP +S+ EN+   +        
Sbjct: 59  T----EGQI---FIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKE 111

Query: 436 HIAQKTAKIVGCHEDILSLKN--GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493
              Q+        ++ L L +  G++  Y  D+I     Q++ L+R +   P +LL DEP
Sbjct: 112 ERKQRV-------KEALELVDLAGFEDRYV-DQISGGQQQRVALARALILKPKVLLFDEP 163

Query: 494 LYHLD 498
           L +LD
Sbjct: 164 LSNLD 168


>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
           protein; Provisional.
          Length = 241

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/201 (23%), Positives = 98/201 (48%), Gaps = 12/201 (5%)

Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
           T+TAKN+    K   R + +++S T+  G    + GP+G GK+     ++G++  + G I
Sbjct: 3   TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60

Query: 390 SFGDRQIS-RDFIEKFSAQIGYLSQHCSLF-PISITENII-LSHDQNSLHIAQKTAKIVG 446
              D  IS      +    IGYL Q  S+F  +S+ +N++ +   ++ L   Q+  +   
Sbjct: 61  IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE 120

Query: 447 CHED--ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
             E+  I  L++    +    E      +++ ++R +A NP  +L+DEP   +D  +  +
Sbjct: 121 LMEEFHIEHLRDSMGQSLSGGE-----RRRVEIARALAANPKFILLDEPFAGVDPISVID 175

Query: 505 FYTLLKQFKENKKTIVIISHD 525
              +++  +++   ++I  H+
Sbjct: 176 IKRIIEHLRDSGLGVLITDHN 196


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
           component A2.  The enzyme that catalyzes the final step
           in methanogenesis, methyl coenzyme M reductase, contains
           alpha, beta, and gamma chains. In older literature, the
           complex of alpha, beta, and gamma chains was termed
           component C, while this single chain protein was termed
           methyl coenzyme M reductase system component A2.
          Length = 520

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 20/191 (10%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF--GDRQI---SRDFIEKF 404
           N+S  + EG    I G SG GK+     + G+L    G ++   GD  +         + 
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361

Query: 405 SAQ--IGYLSQHCSLFPIS-----ITENIILS-HDQNSLHIAQKTAKIVGCHED-ILSLK 455
            A+  IG L Q   L+P       +TE I L   D+ +   A  T K+VG  E+    + 
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421

Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF-YTLLKQFKE 514
           + Y      DE+      ++ L++++   P I+++DEP   +D   K +  +++LK  +E
Sbjct: 422 DKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476

Query: 515 NKKTIVIISHD 525
            ++T +I+SHD
Sbjct: 477 MEQTFIIVSHD 487



 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 55/244 (22%)

Query: 331 ITAKNIV--FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--K 386
           I  KN+   F  K+    + +N+SFTI EG    I G SG GKS  +  + G+   E   
Sbjct: 1   IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS 56

Query: 387 GTI----------------SFGDRQISR----------DFIE-------KFSAQIGYLSQ 413
           G I                S                  DF         +   +I  + Q
Sbjct: 57  GRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ 116

Query: 414 HCSLFPI----SITENIILSHDQNSLH-IAQKTAKIVGCHEDILSLKN-GYQTTYCSDEI 467
               F +    ++ +N++      +L  I  +  + VG   D++ +    ++ T+ + ++
Sbjct: 117 RT--FALYGDDTVLDNVL-----EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169

Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVIISHDP 526
                Q++ L+R +A  P + L DEP   LD +     +  L++  K +  ++V+ SH P
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229

Query: 527 TIIS 530
            +I 
Sbjct: 230 EVIE 233


>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 28/204 (13%)

Query: 340 DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR---QI 396
            K    L   N+S  +P G    + G SG GKS  + C+  L     G++    +    +
Sbjct: 15  TKTIQAL--NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72

Query: 397 SRDFIEKFSAQIGYLSQHCSLFPI-SITENIILS---HDQNSLHIAQKTAKIVGCHEDIL 452
           S   + K   QIG + QH +L    ++  N+ L     +     I +K         ++L
Sbjct: 73  SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT-------ELL 125

Query: 453 SLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
           +L          D  P N+     Q++ ++R +A+NP +LL DE    LD     +   L
Sbjct: 126 ALVG---LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182

Query: 509 LKQFKENKK---TIVIISHDPTII 529
           LK+   N++   TI++I+H+  ++
Sbjct: 183 LKEI--NRRLGLTILLITHEMDVV 204


>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
           subunit; Provisional.
          Length = 257

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 23/197 (11%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--RDF---- 400
           + + +S     G    I G SG GKS FL C+  L    +G+I    + I+  RD     
Sbjct: 20  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79

Query: 401 -------IEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDIL 452
                  +     ++  + QH +L+  +++ EN++ +  Q  L ++++ A+       + 
Sbjct: 80  KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLGLSKQEAR----ERAVK 134

Query: 453 SLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
            L           + P ++     Q++ ++R +A  P +LL DEP   LD E       +
Sbjct: 135 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194

Query: 509 LKQFKENKKTIVIISHD 525
           ++Q  E  KT+V+++H+
Sbjct: 195 MQQLAEEGKTMVVVTHE 211


>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 38/220 (17%)

Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
           M+ +   +    + +R+  T+    ++ SFT+P GS   + G +G GKS     ++G + 
Sbjct: 2   MQQAGIVVNDVTVTWRNGHTA---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58

Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSL---FPISITENIIL------------ 428
           L  G IS   +   +   +     + Y+ Q   +   FP+ + E++++            
Sbjct: 59  LASGKISILGQPTRQALQKNL---VAYVPQSEEVDWSFPV-LVEDVVMMGRYGHMGWLRR 114

Query: 429 --SHDQNSLHIAQKTAKIVGC-HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNP 485
               D+  +  A     +V   H  I  L  G +             +++ L+R IA   
Sbjct: 115 AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK-------------KRVFLARAIAQQG 161

Query: 486 AILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
            ++L+DEP   +D + +    +LL++ ++  KT+++ +H+
Sbjct: 162 QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201


>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 290

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 49/229 (21%)

Query: 331 ITAKNIVFR-DKKT--SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
           IT + +  R   KT   R    +++ +IP GS   I G +G GKS  L  + GLL    G
Sbjct: 3   ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62

Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHC---------SLFPISITENIILS------HDQ 432
           T++ G+R I+     K + ++  L +            LF  ++ ++I          ++
Sbjct: 63  TVTIGERVITA---GKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119

Query: 433 NSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAIL 488
           ++   A++  ++VG  E++L               P+ +    ++++ ++ ++A  P +L
Sbjct: 120 DAKQKAREMIELVGLPEELL------------ARSPFELSGGQMRRVAIAGVLAMEPEVL 167

Query: 489 LMDEPLYHLD----NEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533
           ++DEP   LD     E    FY L    KE   T V+++H     SM D
Sbjct: 168 VLDEPTAGLDPKGRKEMMEMFYKL---HKEKGLTTVLVTH-----SMED 208


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
           Provisional.
          Length = 1466

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 68/271 (25%), Positives = 103/271 (38%), Gaps = 66/271 (24%)

Query: 313 NSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371
           N+ D KK           I  KN+ F  D +    I ++L+FT+ EG      G SGCGK
Sbjct: 370 NNDDGKKLK-----DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGK 424

Query: 372 SNFLLCMLGLLTLEKGTISFGDRQISRDF-IEKFSAQIGYLSQHCSLFPISITEN----- 425
           S  L  +  L    +G I   D    +D  ++ + ++IG +SQ   LF  SI  N     
Sbjct: 425 STILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSL 484

Query: 426 ----------------------------------------IILSHDQNSLHIAQK----- 440
                                                   +  + D N L   +K     
Sbjct: 485 YSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI 544

Query: 441 -------TAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMD 491
                   +K V  H+ + +L + Y+T   S+    +  QK R+S  R I  NP IL++D
Sbjct: 545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604

Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522
           E    LDN+++      +   K N+  I II
Sbjct: 605 EATSSLDNKSEYLVQKTINNLKGNENRITII 635



 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 411  LSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYN 470
            +SQ   LF +SI ENI    +  +    ++  K     E I SL N Y T       PY 
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVG----PYG 1356

Query: 471  IV------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523
                    Q+I ++R +   P ILL+DE    LD+ ++      +   K+   KTI+ I+
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416

Query: 524  HDPTIISMSDFSLIFH 539
            H    I  SD  ++F+
Sbjct: 1417 HRIASIKRSDKIVVFN 1432


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 41/185 (22%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS----RDFIEKFS 405
           ++   + +GS   + G +G GKS  L  + GLL   +G ++ GD  +S    +  I+   
Sbjct: 24  DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83

Query: 406 AQIGYLSQ--HCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463
            ++G + Q     LF  ++ +++     QN     +K  KI     +++ L + +     
Sbjct: 84  KKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKAEKIAAEKLEMVGLADEFW---- 138

Query: 464 SDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519
            ++ P+ +    ++++ ++ I+A  P +L++DEP   LD +A+     L +   ++ +T+
Sbjct: 139 -EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197

Query: 520 VIISH 524
           V+++H
Sbjct: 198 VLVTH 202


>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
           Provisional.
          Length = 233

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 19/199 (9%)

Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397
           +++      +  N+SF+I EG    I G SG GKS  L  + GL T   G + F  + +S
Sbjct: 15  YQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS 74

Query: 398 RDFIEKFSA---------QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC 447
                K S+         ++G++ Q   L P  +  EN+ +         A+  ++    
Sbjct: 75  -----KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR---A 126

Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
            E + ++   ++  +   E+     Q++ ++R + NNP ++L DEP  +LD    ++ + 
Sbjct: 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186

Query: 508 LLKQFKENKKT-IVIISHD 525
           LL +    + T  ++++HD
Sbjct: 187 LLGELNRLQGTAFLVVTHD 205


>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 200

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 8/190 (4%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
           + + Q +SF +P G    + G +G GK+  L  + GLL  EKG I F  + I +D +  +
Sbjct: 14  QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-LCTY 72

Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
             Q+ ++     + P        L+  +N L+    +   VG  E        +   Y  
Sbjct: 73  QKQLCFVGHRSGINP-------YLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPC 125

Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
             +     +++ L R+  +   + L+DEPL  LD  +     T +++ +     +++ SH
Sbjct: 126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185

Query: 525 DPTIISMSDF 534
               ++ +D+
Sbjct: 186 QDLPLNKADY 195


>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
           subunit; Provisional.
          Length = 262

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 47/220 (21%)

Query: 337 VFRDKKTSRLICQN-----LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK----- 386
           + R +K ++   Q+     +   I  G    + GPSG GKS  L  + GL+T +K     
Sbjct: 4   IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63

Query: 387 ----GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILS------------ 429
               G     + +++RD I K  A  GY+ Q  +L   +S+ EN+++             
Sbjct: 64  IELLGRTVQREGRLARD-IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCF 122

Query: 430 ------HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIAN 483
                   Q +L    +   +   H+ + +L  G Q             Q++ ++R +  
Sbjct: 123 SWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ-------------QRVAIARALMQ 169

Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
              ++L DEP+  LD E+       L+   +N    V+++
Sbjct: 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209


>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
          Length = 402

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 30/211 (14%)

Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
            I   ++      T+  +   +  ++ EGS   + GP+G GK+  L  + G LT   GT+
Sbjct: 3   MIDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60

Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSL-FPISITENIIL----------SHDQNSLHIA 438
                 +        S ++  + Q  SL F   + + + +          +  +      
Sbjct: 61  LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120

Query: 439 QKTAKIVG----CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494
           ++  +  G        + SL  G +             Q++ L+R +A    +LL+DEP 
Sbjct: 121 ERAMERTGVAQFADRPVTSLSGGER-------------QRVLLARALAQATPVLLLDEPT 167

Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
             LD   +     L+++  ++ KT V   HD
Sbjct: 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198


>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 254

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 20/190 (10%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL------LTLEKGTISFGDRQISRDF-IE 402
           N++  I + S   + GPSGCGKS FL  +  +      + +E   I  G    S +F I 
Sbjct: 25  NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84

Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
           +   +IG + Q  + F +SI +NI      +     +K  +IV       SLK       
Sbjct: 85  ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVE-----QSLKKSALWNE 139

Query: 463 CSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
             D++  N +       Q++ ++R +A  P ++LMDEP   LD  +      L+   KE+
Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES 199

Query: 516 KKTIVIISHD 525
             TI+I++H+
Sbjct: 200 -YTIIIVTHN 208


>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
           subunit; Provisional.
          Length = 356

 Score = 51.4 bits (124), Expect = 7e-07
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 50/174 (28%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCML-GLLTLEKGTISFGDRQIS------RDFIEK 403
           +   + +G   ++ GPSGCGKS  LL M+ GL  +  G I  G R ++      RD    
Sbjct: 23  IDLDVADGEFIVLVGPSGCGKST-LLRMVAGLERITSGEIWIGGRVVNELEPADRD---- 77

Query: 404 FSAQIGYLSQHCSLFP-ISITENII-------LSHDQNSLHIAQ---KTAKIVGCHEDIL 452
               I  + Q+ +L+P +S+ EN+        +   +    I +   + A+I+   E +L
Sbjct: 78  ----IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE----IEERVAEAARILEL-EPLL 128

Query: 453 SLK----NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
             K    +G Q             Q++ + R I   PA+ L DEPL +LD  AK
Sbjct: 129 DRKPRELSGGQR------------QRVAMGRAIVREPAVFLFDEPLSNLD--AK 168


>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
           Reviewed.
          Length = 556

 Score = 50.9 bits (123), Expect = 8e-07
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 24/119 (20%)

Query: 305 LNDFTTLLNSSDSKKE-------PISMRLSNNTITAKNIV--FRDKKTSRLICQNLSFTI 355
           L  +  LL+    K+        P   RL +  I A+N+   F D    RL+  +LSF++
Sbjct: 292 LARYEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD----RLLIDDLSFSL 347

Query: 356 PEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQH 414
           P G    I GP+G GKS     + G    + GTI  G+           + ++ Y+ Q 
Sbjct: 348 PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-----------TVKLAYVDQS 395



 Score = 36.6 bits (86), Expect = 0.015
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525
           L R++   P +LL+DEP  HLD E+       L+QF  +   T+V ++HD
Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLDAESVA----WLEQFLHDYPGTVVAVTHD 219


>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 50.8 bits (121), Expect = 9e-07
 Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTI 389
           NI + DK+      +N++  +  G+   + GPSGCGK+ FL  +  +  L       G I
Sbjct: 11  NIYYGDKQA----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66

Query: 390 SFGDRQISRDFIEKFSAQ--IGYLSQHCSLFP-ISITENII-------LSHDQNSLHIAQ 439
               + I    ++  + +  +G + Q  + FP +S+ +N++       +    + + +A+
Sbjct: 67  LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126

Query: 440 KTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499
           ++ +     +++        T     +      Q++ ++R +A  P ILLMDEP   LD 
Sbjct: 127 RSLRGAALWDEVKDRLKTPATGLSGGQ-----QQRLCIARALAVEPEILLMDEPTSALDP 181

Query: 500 EAKNNFYTLLKQFKENKKTIVIISHD 525
            +      L+   K+   TI+I++H+
Sbjct: 182 ASTARIEDLMTDLKK-VTTIIIVTHN 206


>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
           Reviewed.
          Length = 240

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 33/193 (17%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT-----ISFGDRQISRDFIEKF 404
           N+   I +G   +I GPSG GKS  L C+  L  +  G      +   D ++    I + 
Sbjct: 19  NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ- 77

Query: 405 SAQIGYLSQHCSLFP-ISITENIILSHDQ---NSLHIAQKTAKI----VGCHEDI----L 452
             + G + Q   LFP ++  EN++    +    S   A+K A+     VG  E       
Sbjct: 78  --EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS 135

Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF 512
            L  G Q             Q++ ++R +A  P ++L DEP   LD E ++    +++  
Sbjct: 136 ELSGGQQ-------------QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182

Query: 513 KENKKTIVIISHD 525
            E   T+VI++H+
Sbjct: 183 AEEGMTMVIVTHE 195


>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 283

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 28/198 (14%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSA 406
           + ++  I +G    I G +G GKS     + G+L    G I F  + I  SR  + K   
Sbjct: 23  KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82

Query: 407 QIGYLSQH--CSLFPISITE-------NIILSHDQ---NSLHIAQKTAKIVGCHEDILSL 454
            +G + Q     LF  S+ +       N+ L  D+      +  ++T         I  L
Sbjct: 83  SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTG--------IEHL 134

Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-K 513
           K+  + T+C   + +   +++ ++ ++   P +L++DEP   LD    +    LL +  K
Sbjct: 135 KD--KPTHC---LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189

Query: 514 ENKKTIVIISHDPTIISM 531
           E   TI+I +HD  I+ +
Sbjct: 190 ELGLTIIIATHDIDIVPL 207


>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter.  This model
           describes cyclic peptide transporter in bacteria.
           Bacteria have elaborate pathways for the production of
           toxins and secondary metabolites. Many such compounds,
           including syringomycin and pyoverdine are synthesized on
           non-ribosomal templates consisting of a multienzyme
           complex. On several occasions the proteins of the
           complex and transporter protein are present on the same
           operon. Often times these compounds cross the biological
           membrane by specific transporters. Syringomycin is an
           amphipathic, cylclic lipodepsipeptide when inserted into
           host causes formation of channels, permeable to variety
           of cations. On the other hand, pyoverdine is a cyclic
           octa-peptidyl dihydroxyquinoline, which is efficient in
           sequestering iron for uptake.
          Length = 555

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 11/186 (5%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
           +   I +G    I G +GCGKS       GL   ++G I      +S D  + +      
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA 420

Query: 411 LSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYN 470
           +     LF   I  +     +  SL  AQ+  + +   + +     G+ TT     +   
Sbjct: 421 IFADFHLFDDLIGPD---EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTG 474

Query: 471 IVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENKKTIVIISHDPT 527
             Q+ RL+ I A   +  ILL DE     D   K  FY  LL   K   KTI+IISHD  
Sbjct: 475 --QQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532

Query: 528 IISMSD 533
              ++D
Sbjct: 533 YFELAD 538


>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
           Provisional.
          Length = 501

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 24/207 (11%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQI 408
           ++SFT+ +G    ++G  G G++  +  + G L    G ++    ++  R   +  +  I
Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329

Query: 409 GYLSQHCS----LFPISITENIIL------SHDQNSL-HIAQKTAKIVGCHEDILSLKNG 457
            Y+S+       +  +S+ EN+ L      S    SL H  ++ A  V     + ++K  
Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQA--VSDFIRLFNIK-- 385

Query: 458 YQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
              T   ++    +     QK+ ++R +   P +L++DEP   +D  AK   Y L+ QFK
Sbjct: 386 ---TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK 442

Query: 514 ENKKTIVIISHD-PTIISMSDFSLIFH 539
               +I+++S + P ++ MSD  L+ H
Sbjct: 443 AEGLSIILVSSEMPEVLGMSDRILVMH 469



 Score = 30.7 bits (70), Expect = 0.92
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS----RDFIEKFSAQIGYLSQHCSLFP- 419
           G +G GKS  +  + G+ T + G+I +  ++++    +   E   A IG + Q  +L P 
Sbjct: 37  GENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE---AGIGIIHQELNLIPQ 93

Query: 420 ISITENIIL 428
           ++I ENI L
Sbjct: 94  LTIAENIFL 102


>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 27/242 (11%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL-TLEK- 386
           N I+AK++         L   +L F   E +  I  GPSGCGKS FL C+  +   +E  
Sbjct: 3   NIISAKDVHLSYGNYEALHGISLDFEEKELTALI--GPSGCGKSTFLRCLNRMNDDIENI 60

Query: 387 ---GTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKT 441
              G I F  + I  S+  + +   ++G + Q  + FP S+ +N+        L IA   
Sbjct: 61  KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAY-----GLKIAGVK 115

Query: 442 AKIVGCHEDILSLKNGYQTTYCSDEIPYNI-------VQKIRLSRIIANNPAILLMDEPL 494
            K +       SLK         D +  N         Q+I ++R +A  P ++L+DEP 
Sbjct: 116 DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175

Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQD 551
             LD  + +     L + K ++ T ++++H+      +SD +     + G L   G T++
Sbjct: 176 SALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFL--MNGDLIEAGPTEE 232

Query: 552 IF 553
           +F
Sbjct: 233 MF 234


>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
           Several bacterial species have enzymes xylose isomerase
           and xylulokinase enzymes for xylose utilization. Members
           of this protein family are the ATP-binding cassette
           (ABC) subunit of the known or predicted high-affinity
           xylose ABC transporter for xylose import. These genes,
           which closely resemble other sugar transport ABC
           transporter genes, typically are encoded near xylose
           utilization enzymes and regulatory proteins. Note that
           this form of the transporter contains two copies of the
           ABC transporter domain (pfam00005).
          Length = 500

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 40/229 (17%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-KGTISFGDRQIS-RDFIEKFSAQ 407
           ++SF++  G    +AG  G G++  +  + G    + +G +    + +  R+  +   A 
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337

Query: 408 IGYLSQ----HCSLFPISITENIILS--------------HDQNSLHIAQKTAKIVGCHE 449
           I  + +    H  +  + + +NI LS               +   +  A +  K+     
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397

Query: 450 D--ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
              I  L  G Q             QK  L++++  NP +L++DEP   +D  AK   Y 
Sbjct: 398 FLPIGRLSGGNQ-------------QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444

Query: 508 LLKQFKENKKTIVIISHD-PTIISMSDFSLIFHP--IQGSLF--GLTQD 551
           L+ Q  +    I+++S +   ++ +SD  L+     ++G      LTQ+
Sbjct: 445 LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQE 493



 Score = 30.6 bits (69), Expect = 1.1
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 6/181 (3%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFL--LCMLGLLTLEKGTISFGDRQI-SRDFIEKFSA 406
            +   +  G C  + G +G GKS  +  L  +       G I +    + + +  +   A
Sbjct: 19  GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78

Query: 407 QIGYLSQHCSLFP-ISITENIILSHD-QNSLHIAQKTAKIVGCHEDILSLK-NGYQTTYC 463
            I  + Q  +L P +S+ ENI L ++           A  +     +  L+ +    T  
Sbjct: 79  GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP 138

Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
             +      Q + +++ +     +L++DEP   L  +       +++  K +    V IS
Sbjct: 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198

Query: 524 H 524
           H
Sbjct: 199 H 199


>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 260

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 44/230 (19%)

Query: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC--- 377
              +  + + I  +N+ F   K   L  +N++  I +       GPSGCGKS  L     
Sbjct: 4   MSMVATAPSKIQVRNLNFYYGKFHAL--KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61

Query: 378 MLGLLTLEK--GTISFGDRQI--SRDFIEKFSAQIGYLSQHCSLFPISITENII------ 427
           M  L   ++  G I      I   +  I    A++G + Q  + FP+SI +NI       
Sbjct: 62  MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLF 121

Query: 428 --LSH---DQNSLHIAQKTA-------KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKI 475
             LS    D+       K A       K+   H+   SL  G Q             Q++
Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVKDKL---HQSGYSLSGGQQ-------------QRL 165

Query: 476 RLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
            ++R IA  P +LL+DEP   LD  +      L+ + K++  T+VI++H+
Sbjct: 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTHN 214


>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
           ABC transporter, ATP-binding subunit.  Model TIGR03731
           represents the family of all lantibiotics related to
           gallidermin, including epidermin, mutatin, and nisin.
           This protein family describes the ATP-binding subunit of
           a gallidermin/epidermin class lantibiotic protection
           transporter. It is largely restricted to
           gallidermin-family lantibiotic biosynthesis and export
           cassettes, but also occurs in orphan transporter
           cassettes in species that lack candidate lantibiotic
           precursor and synthetase genes.
          Length = 223

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 40/205 (19%)

Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393
           KN+  R  K  +    N+S T+P+ S   + GP+G GKS  L  + G+L    G I F  
Sbjct: 4   KNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61

Query: 394 RQISRDFIEKFSAQI------GYLSQHCSLFPISITENIILSHDQNSLHIA------QKT 441
              +R  + K  + I        L+   +L   +    +  S     L+I       +K 
Sbjct: 62  HPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK 121

Query: 442 AKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA--NNPAILLMDEPLYHLDN 499
           AK                         +++  K RL   IA  N+P +L++DEP   LD 
Sbjct: 122 AK------------------------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157

Query: 500 EAKNNFYTLLKQFKENKKTIVIISH 524
                   L++ F E   T+++ SH
Sbjct: 158 IGIQELRELIRSFPEQGITVILSSH 182


>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 39/203 (19%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG-----DRQISRDFIEKF 404
           N++  I +G    + G +G GKS  +  + GLL    G I        D+++    I K 
Sbjct: 25  NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK- 83

Query: 405 SAQIGYLSQH--CSLFPISITENII-------LSHDQNSLHIAQKTAKIVGCHEDILSLK 455
             ++G + Q+    LF  +I ++I        LS ++    + ++   IVG   +     
Sbjct: 84  --KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-KRAMNIVGLDYEDYK-- 138

Query: 456 NGYQTTYCSDEIPYNIV--QKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
                    D+ P+ +   QK R  ++ ++A  P IL++DEP   LD + ++     +K+
Sbjct: 139 ---------DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189

Query: 512 F-KENKKTIVIISHDPTIISMSD 533
             KE   TI+++SH     SM D
Sbjct: 190 LHKEYNMTIILVSH-----SMED 207


>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
           This family represents the NikD subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
           NikD and NikE are homologous.
          Length = 230

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 26/198 (13%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL----TLEKGTISFGDRQISRDFIEKF 404
           Q+L+ ++  G    + G SG GKS   L +LGLL    T   G I    R +    I   
Sbjct: 3   QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR-- 60

Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQ-----NSLHI--AQKTAKIVGCHEDILSLKNG 457
              I  + Q+    P +    +    +       SL     Q  A I+   E +  L + 
Sbjct: 61  GRHIATIMQN----PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV-GLPDP 115

Query: 458 YQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
            +      + P+ +    +Q++ ++  +   P  L+ DEP   LD   +     LL++ +
Sbjct: 116 EEVL---KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172

Query: 514 ENKKT-IVIISHDPTIIS 530
           +   T I++I+HD  +++
Sbjct: 173 QLFGTGILLITHDLGVVA 190


>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
          Length = 251

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%)

Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403
            R +  ++S  +  G    + GP+G GKS  +  +LGL+  ++G I    +         
Sbjct: 16  QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--------- 66

Query: 404 FSAQIGYLSQHCSL---FPISITENIILSHDQNSLHI--AQKTAKIVGCHEDILSLKNGY 458
              +IGY+ Q   L    P+++   + L        I  A K  +     +  +   +G 
Sbjct: 67  --LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGG 124

Query: 459 QTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK-ENKK 517
           +T            Q++ L+R + N P +L++DEP   +D   +   Y L+ Q + E   
Sbjct: 125 ET------------QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC 172

Query: 518 TIVIISHD 525
            ++++SHD
Sbjct: 173 AVLMVSHD 180


>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
           Provisional.
          Length = 242

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 49/203 (24%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-GTISFGDRQISRDF-------- 400
           +++   P+G   ++ GPSG GKS+ LL +L LL + + GT++        DF        
Sbjct: 20  DITLDCPQGETLVLLGPSGAGKSS-LLRVLNLLEMPRSGTLNIAGNHF--DFSKTPSDKA 76

Query: 401 IEKFSAQIGYLSQHCSLFP-ISITENII--------LSHDQ---------NSLHIAQKTA 442
           I +    +G + Q  +L+P +++ +N+I        LS DQ           L +     
Sbjct: 77  IRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136

Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
           +        L L  G Q             Q++ ++R +   P +LL DEP   LD E  
Sbjct: 137 RFP------LHLSGGQQ-------------QRVAIARALMMEPQVLLFDEPTAALDPEIT 177

Query: 503 NNFYTLLKQFKENKKTIVIISHD 525
               +++++  E   T VI++H+
Sbjct: 178 AQIVSIIRELAETGITQVIVTHE 200


>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
           YejF; Provisional.
          Length = 529

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR---QISRDFIEKFS 405
           +N+SFT+  G    + G SG GKS   L +L L+  + G I F  +    ++R  +    
Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVR 361

Query: 406 AQIGYLSQ--HCSLFPISITENII---LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
            +I  + Q  + SL P      II   L   Q +L  AQ+  +++   E++  L    + 
Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV-GLDPETRH 420

Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520
            Y + E      Q+I ++R +   P+++++DEP   LD   +     LLK  ++  +   
Sbjct: 421 RYPA-EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAY 479

Query: 521 I-ISHD 525
           + ISHD
Sbjct: 480 LFISHD 485



 Score = 33.9 bits (78), Expect = 0.11
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382
            I   ++ FR ++T R +  ++S  I  G    + G SG GKS   L +L LL
Sbjct: 7   AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59


>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 27/226 (11%)

Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFI 401
             S+    N++F  P  S   + GP+G GKS       G+L    G++      I+++ I
Sbjct: 14  SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI 73

Query: 402 EKFSAQIGYLSQHC--SLFPISITENII-----LSHDQNSL-HIAQKTAKIVGCHEDILS 453
            +    +G + Q+    +F  ++ ++I      L  D+ ++ H       ++G  E++  
Sbjct: 74  REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL-EELR- 131

Query: 454 LKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509
                      D +P+++     +++ ++ +IA  P +L++DEP   LD +        L
Sbjct: 132 -----------DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180

Query: 510 KQFKENKKTIVIIS-HDPTII-SMSDFSLIFHPIQGSLFGLTQDIF 553
               E     VI S H   ++  M+D+  +    +   +G  ++IF
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226


>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 289

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 38/235 (16%)

Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376
           +KK P   +  NNT    ++ F+  K +                C+I G +G GKS  + 
Sbjct: 17  AKKTPFEFKALNNT----SLTFKKNKVT----------------CVI-GTTGSGKSTMIQ 55

Query: 377 CMLGLLTLEKGTISFGDRQISRDF-----IEKFSAQIGYLSQ--HCSLFPISITENII-- 427
              GL+  E G    GD  I  +      +++   +IG + Q     LF  +I ++I   
Sbjct: 56  LTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115

Query: 428 -LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPA 486
            ++  +N     +K  +++     ++ L   Y       E+     +++ L+ IIA +  
Sbjct: 116 PVNLGENKQEAYKKVPELL----KLVQLPEDY-VKRSPFELSGGQKRRVALAGIIAMDGN 170

Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD-PTIISMSDFSLIFH 539
            L++DEP   LD + + +F  L ++  KE KK I++++H+   ++ ++D  ++ H
Sbjct: 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225


>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
           PQQ-dependent alcohol dehydrogenase system.  Members of
           this protein family are the ATP-binding subunit of an
           ABC transporter system that is associated with PQQ
           biosynthesis and PQQ-dependent alcohol dehydrogenases.
           While this family shows homology to several efflux ABC
           transporter subunits, the presence of a periplasmic
           substrate-binding protein and association with systems
           for catabolism of alcohols suggests a role in import
           rather than detoxification.
          Length = 236

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 27/166 (16%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
            ++SFT+  G    + GP+G GKS     +  L   ++G IS     + R       A++
Sbjct: 18  DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL-ARL 76

Query: 409 GYLSQHCSL-FPISITENII-------LSHDQNSLHIAQKTAKIVGC----HEDILSLKN 456
           G + Q  +L   +S+ +N+        LS  +    IA   A++ G      + +  L  
Sbjct: 77  GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-GLAERADDKVRELNG 135

Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
           G++             +++ ++R + + PA+LL+DEP   LD  ++
Sbjct: 136 GHR-------------RRVEIARALLHRPALLLLDEPTVGLDPASR 168


>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
           protein; Provisional.
          Length = 369

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 22/162 (13%)

Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405
           +I ++++  I EG   +  GPSGCGKS  L  + GL  +  G +  G+++++   +    
Sbjct: 17  VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND--VPPAE 74

Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQ-KTAKI---VGCHEDILSLKNGYQT 460
             +G + Q  +L+P +S+ EN+        L +A  K  +I   V    ++L      Q 
Sbjct: 75  RGVGMVFQSYALYPHLSVAENMSF-----GLKLAGAKKEEINQRVNQVAEVL------QL 123

Query: 461 TYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLD 498
            +  D  P  +     Q++ + R +   P++ L+DEPL +LD
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165


>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 29/243 (11%)

Query: 329 NTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--- 385
           N I  +++     +   L   NL   IP+ +   + GPSG GKS  L     L+ L    
Sbjct: 2   NKIEIRDLKVSFGQVEVLDGVNLE--IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEA 59

Query: 386 --KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTA 442
              G +    + I +  + +   ++  + Q  +  P +SI EN+ L    N L  ++K  
Sbjct: 60  RVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK-- 117

Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNI-----------VQKIRLSRIIANNPAILLMD 491
                 E    ++   +     DE+   +            Q++ ++R +A  P +LL D
Sbjct: 118 ------ELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171

Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQ 550
           EP  +LD E      +L  + K++  TIV+++H P   + +SD+    +  Q   +G T+
Sbjct: 172 EPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230

Query: 551 DIF 553
           ++F
Sbjct: 231 EVF 233


>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
            Members of this family are the PhnK protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated complex. This protein (PhnK) and the
           adjacent-encoded PhnL resemble transporter ATP-binding
           proteins but are suggested, based on mutatgenesis
           studies, to be part of this complex rather than part of
           a transporter per se.
          Length = 253

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 30/199 (15%)

Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ 407
           C+++SF +  G    I G SG GKS  L C+ G L  + GT ++  R  S   +E +   
Sbjct: 19  CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR--SGAELELYQ-- 74

Query: 408 IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN---GYQTTYCS 464
              LS+      +      +  + ++ L +       +G  E ++++     G       
Sbjct: 75  ---LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIG--ERLMAIGARHYGNIRAAAH 129

Query: 465 D-----EIPYNIV------------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
           D     EI    +            Q+++++R +   P ++ MDEP   LD   +     
Sbjct: 130 DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189

Query: 508 LLKQF-KENKKTIVIISHD 525
           LL+   ++    ++I++HD
Sbjct: 190 LLRGLVRDLGLAVIIVTHD 208


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 44/190 (23%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
           +NL+  +  G    I G +G GK+  L  ++G L  + GT+ + +           +A I
Sbjct: 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384

Query: 409 GYLSQ-HCSLFP--ISITENIILSHDQNSLHIAQ-KTAKIVGCHEDILSLKNGY--QTTY 462
           GY +Q H   F   +++ +            ++Q +        +D  +++ G   +  +
Sbjct: 385 GYYAQDHAYDFENDLTLFD-----------WMSQWRQEG-----DDEQAVR-GTLGRLLF 427

Query: 463 CSDEIPYNIV-----QKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
             D+I  ++      +K R+   +++   P +L+MDEP  H+D E+  +    L+++   
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--- 484

Query: 516 KKTIVIISHD 525
           + T++ +SHD
Sbjct: 485 EGTLIFVSHD 494



 Score = 37.6 bits (88), Expect = 0.008
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
           NP ILL+DEP  +LD    N    L     E   T++IISHD
Sbjct: 173 NPDILLLDEPTNNLD---INTIRWLEDVLNERNSTMIIISHD 211


>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
           Provisional.
          Length = 232

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 37/190 (19%)

Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ--IG 409
             T+  G    I GPSG GKS  L  + G LT   G+++       +D      ++  + 
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG----QDHTTTPPSRRPVS 74

Query: 410 YLSQHCSLFP-ISITENI--------ILSHDQNSLHIAQKTAKIVGCHEDILS-----LK 455
            L Q  +LF  +++ +NI         L+  Q         A+ +G  ED+L+     L 
Sbjct: 75  MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR--EKLHAIARQMGI-EDLLARLPGQLS 131

Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
            G +             Q++ L+R +     ILL+DEP   LD   +    TL+ Q  + 
Sbjct: 132 GGQR-------------QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178

Query: 516 KK-TIVIISH 524
           ++ T++++SH
Sbjct: 179 RQLTLLMVSH 188


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 41/196 (20%), Positives = 88/196 (44%), Gaps = 25/196 (12%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI------------ 396
             L+F++  G    + GPSG GKS  L  ++ L  +++G I     Q+            
Sbjct: 17  DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVP 76

Query: 397 -SRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL 454
                + +   +IG + Q  +LFP  ++ +N+  +     L +A+  A+     +  + L
Sbjct: 77  ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-PVLVLGMARAEAE-----KRAMEL 130

Query: 455 KNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
            +       +D +P  +     Q++ ++R +A  P ++L DE    LD E       +++
Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190

Query: 511 QF-KENKKTIVIISHD 525
           +   E+  T+++++H+
Sbjct: 191 RLASEHDLTMLLVTHE 206


>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 44/186 (23%)

Query: 365 GPSGCGKSNFLLCMLGLLTLEKG-----TISFGDRQISRDFIEKFSAQ--IGYLSQHCSL 417
           GPSGCGKS  L  +  +  L KG      + F  + +    ++    +  IG + Q  + 
Sbjct: 41  GPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100

Query: 418 FPISITENIILSHDQNSL---------HIAQKTA---------KIVGCHEDILSLKNGYQ 459
           F +SI +N+      N           H  Q  A         K+ G     LSL  G Q
Sbjct: 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSG-----LSLSGGQQ 155

Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519
              C             ++R IA  P +LL+DEP   LD  A      L+ + K++  TI
Sbjct: 156 QRLC-------------IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTI 201

Query: 520 VIISHD 525
            +++H+
Sbjct: 202 ALVTHN 207


>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
          Length = 635

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530
           K  L R + +NP +LL+DEP  HLD E        LK F   + +I+ ISHD + I 
Sbjct: 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIR 217



 Score = 37.2 bits (87), Expect = 0.011
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 336 IVFRDKKTS-----RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
           IVF  +  +     + + ++ S  +  G    + GP+GCGK+  L  MLG L  + G I 
Sbjct: 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377

Query: 391 FG 392
            G
Sbjct: 378 CG 379


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 46/253 (18%)

Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD- 393
           NI F  ++      +NLSF++  G    I G SG GKS   L ++ LL    G +     
Sbjct: 19  NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78

Query: 394 --RQISRDFIE--KFS---------AQIGYLSQH--CSLFPI-----SITENIILSHD-- 431
             R+ SR  IE  + S         A +  + Q    SL P+      I E+I L     
Sbjct: 79  LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS 138

Query: 432 -QNSLHIAQKTAKIVGCHE--DILS-----LKNGYQTTYCSDEIPYNIVQKIRLSRIIAN 483
            + ++  A++    V   E   ILS     L  G +             Q++ ++  ++ 
Sbjct: 139 REEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMR-------------QRVMIAMALSC 185

Query: 484 NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI-ISHDPTIIS-MSDFSLIFHPI 541
            PA+L+ DEP   LD   +     L+K  ++     VI I+HD  +++ ++D  L+ +  
Sbjct: 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245

Query: 542 QGSLFGLTQDIFK 554
           +    G  + IF 
Sbjct: 246 EAVETGSVEQIFH 258



 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 8/188 (4%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFIEKFS 405
           + +SF +  G    + G SG GKS     +L L+  + G I F  ++I   S   ++   
Sbjct: 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALR 400

Query: 406 AQIGYLSQ--HCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
             I ++ Q  + SL P  ++ ++I+     + L   +  A  V    + + L   +   Y
Sbjct: 401 RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY 460

Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVI 521
              E      Q+I ++R +A NP +++ DE +  LD   +     LL    ++     + 
Sbjct: 461 -PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519

Query: 522 ISHDPTII 529
           ISHD  ++
Sbjct: 520 ISHDMAVV 527


>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
           protein UrtE.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 230

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 37/164 (22%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRD-FIEKFS 405
           I + +S  +P+G    + G +G GK+  L  ++GLL ++ G+I      I++    E+  
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILS----------- 453
           A I Y+ Q   +FP +++ EN++         + +++ KI    ++I             
Sbjct: 75  AGIAYVPQGREIFPRLTVEENLLTGLAA----LPRRSRKIP---DEIYELFPVLKEMLGR 127

Query: 454 ----LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493
               L  G Q             Q++ ++R +   P +LL+DEP
Sbjct: 128 RGGDLSGGQQ-------------QQLAIARALVTRPKLLLLDEP 158


>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 49/206 (23%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----------KGTISFGDRQIS 397
           ++++  I   S     GPSGCGKS  L       TL            +G +      + 
Sbjct: 21  EDVNLNIEPRSVTAFIGPSGCGKSTVLR------TLNRMHEVIPGARVEGEVLLDGEDLY 74

Query: 398 RDFIEKFSA--QIGYLSQHCSLFP-ISITENII----LSHDQNSL---HIAQKTAKIVGC 447
              ++  +    IG + Q  + FP +SI +N++    L+  +N      + +K+ +    
Sbjct: 75  GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL 134

Query: 448 HEDI--------LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499
             ++          L  G Q             Q++ ++R IA  P +LLMDEP   LD 
Sbjct: 135 WNEVKDRLDKPGGGLSGGQQ-------------QRLCIARAIAVEPDVLLMDEPCSALDP 181

Query: 500 EAKNNFYTLLKQFKENKKTIVIISHD 525
            +      L+ + K++  TIVI++H+
Sbjct: 182 ISTLAIEDLINELKQD-YTIVIVTHN 206


>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 282

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 19/239 (7%)

Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL---T 383
            +N +  K++ F    + +    ++SF+IP GS   + G +G GKS     + GLL    
Sbjct: 2   KDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61

Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHC-SLFPISITENIILSHDQNSLHIAQKTA 442
                I+     ++   +     ++G + Q+  + F  +   + +    +N      +  
Sbjct: 62  NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI 121

Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLD 498
           KIV    D+L+        Y   E P N+     Q++ ++ I+A  P I+++DE    LD
Sbjct: 122 KIV---RDVLADVG--MLDYIDSE-PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175

Query: 499 NEAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSDFSLIFHPIQGSLF--GLTQDIFK 554
              K     L+++  K+N  T++ I+HD    +M+D  L+     G L   G   +IF 
Sbjct: 176 PAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD--DGKLLAQGSPVEIFS 232


>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
           Provisional.
          Length = 343

 Score = 46.7 bits (112), Expect = 2e-05
 Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 48/220 (21%)

Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
           I  KNI  VF     +     N+S  IP G    + G SG GKS  + C+  L     G 
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 389 ISFGDR---QISRDFIEKFSAQIGYLSQHCSLFPISIT--ENIILSHDQNSLHIAQKT-A 442
           +    +    +S   + K   QIG + QH +L   S T  +N+ L      L +A    A
Sbjct: 62  VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS-SRTVFDNVALP-----LELAGTPKA 115

Query: 443 KI----------VGCHEDILS-LKNGYQTTYCSDEIPYNIV--QKIRLS--RIIANNPAI 487
           +I          VG     LS   + Y         P  +   QK R++  R +A+NP +
Sbjct: 116 EIKARVTELLELVG-----LSDKADRY---------PAQLSGGQKQRVAIARALASNPKV 161

Query: 488 LLMDEPLYHLDNEAKNNFYTLLKQFKENKK---TIVIISH 524
           LL DE    LD     +   LLK    N++   TIV+I+H
Sbjct: 162 LLCDEATSALDPATTRSILELLKDI--NRELGLTIVLITH 199


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIISM 531
           QK  L++ +  NP IL++DEP   +D  AK   Y L+ Q  ++    IVI S  P ++ +
Sbjct: 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGL 471

Query: 532 SDFSLIFHP--IQGSLF--GLTQD 551
           SD  L+ H   ++G L    LTQ+
Sbjct: 472 SDRVLVMHEGKLKGDLINHNLTQE 495


>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
           protein; Provisional.
          Length = 648

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMS 532
           Q++ ++R + N   ++L DEP   LD+ +      +L Q ++   T++I++HDP + + +
Sbjct: 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQA 210

Query: 533 D 533
           +
Sbjct: 211 E 211


>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
           ATP-binding subunit.  This model describes daunorubicin
           resistance ABC transporter, ATP binding subunit in
           bacteria and archaea. This model is restricted in its
           scope to preferentially recognize the ATP binding
           subunit associated with effux of the drug, daunorubicin.
           This transport system belong to the larger ATP-Binding
           Cassette (ABC) transporter superfamily. The
           characteristic feature of these transporter is the
           obligatory coupling of ATP hydrolysis to substrate
           translocation. The minimal configuration of bacterial
           ABC transport system: an ATPase or ATP binding subunit;
           An integral membrane protein; a hydrophilic polypetpide,
           which likely functions as substrate binding protein. In
           eukaryotes proteins of similar function include p-gyco
           proteins, multidrug resistance protein etc.
          Length = 302

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
           ++F + EG      GP+G GK+  +  +  LL    GT       + R+   K    IG 
Sbjct: 12  VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGI 70

Query: 411 LSQHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI-- 467
           + Q+ S+    +  EN+ +      L   +   +     E++L L   ++    +D    
Sbjct: 71  VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA----EELLEL---FELGEAADRPVG 123

Query: 468 PYN--IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
            Y+  + +++ ++  + + P +L +DEP   LD   +   +  ++  KE   TI++ +H 
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183


>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 7/215 (3%)

Query: 328 NNTITAKNIVFRDKKTSRLICQN-LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
           N  +  +N+VF+ +K S +   N +SF+I +G    I G +G GKS     + GL    +
Sbjct: 2   NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61

Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQH--CSLFPISITENIILSHDQNSLHIAQKTAKI 444
           G +      ++ + +     +IG + Q+        ++ +++    +   +   +   ++
Sbjct: 62  GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121

Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
               E +L++      T     +     Q++ ++ IIA  P I+++DE    LD   +  
Sbjct: 122 ---DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178

Query: 505 FYTLLKQFKENKK-TIVIISHDPTIISMSDFSLIF 538
              ++ + KE  + T++ I+HD    + SD  L+ 
Sbjct: 179 IMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVM 213


>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 320

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 44/231 (19%)

Query: 322 ISMRLSNNTITAKNIVFRDKKTSRL-ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380
           I +R+ N        VF +K+ + L    N+S+T  +     I G SG GKS  +    G
Sbjct: 20  IILRVKNLYC-----VFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74

Query: 381 LLTLEKGTISFGD------------------RQISRDFIEKFSAQIGYLSQ--HCSLFPI 420
           L+  + GTI  GD                  ++I     ++   ++  + Q     LF  
Sbjct: 75  LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKN--FKELRRRVSMVFQFPEYQLFKD 132

Query: 421 SITENII---LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--QKI 475
           +I ++I+   ++         +        + + + L + Y      +  P+ +   QK 
Sbjct: 133 TIEKDIMFGPVALGVKKSEAKKLAKF----YLNKMGLDDSYL-----ERSPFGLSGGQKR 183

Query: 476 R--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
           R  ++ I+A  P IL+ DEP   LD + ++    L+   K N KT+ +I+H
Sbjct: 184 RVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITH 234


>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 275

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 32/211 (15%)

Query: 331 ITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
           +  +++ +     T  L  + ++F   +G    + GP+G GKS   L   G+L    G +
Sbjct: 2   LETRDLKYSYPDGTEAL--KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59

Query: 390 SFGDRQISRD--FIEKFSAQIGYLSQHC--SLFPISITE-------NIILSHDQNSLHIA 438
                 I  D   + +    +G + Q+    LF  ++ E       N+ LS ++    + 
Sbjct: 60  LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV- 118

Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV--QKIR--LSRIIANNPAILLMDEPL 494
           ++  K VG          G++     ++ P+++   QK R  ++ I+A  P I+++DEP 
Sbjct: 119 KEALKAVGM--------EGFE-----NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165

Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
             LD    +    LL    +   TI+I +HD
Sbjct: 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHD 196


>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
           Provisional.
          Length = 549

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 55/180 (30%), Positives = 71/180 (39%), Gaps = 25/180 (13%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
           N+SF +PEG    I G +G GKS     + G+    KGT+   D + S   I   S   G
Sbjct: 42  NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV---DIKGSAALIAISSGLNG 98

Query: 410 YLSQHCSLFPISITENIILSHDQNSL---HIAQKTAKIVGCHEDILSLKNGYQTTYCSDE 466
            L+           ENI L      L    I +   +I+    DI         TY S  
Sbjct: 99  QLTG---------IENIELKGLMMGLTKEKIKEIIPEIIE-FADIGKFIYQPVKTYSSG- 147

Query: 467 IPYNIVQKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
                  K RL   I+   NP IL++DE L   D          + +FKE  KTI  ISH
Sbjct: 148 ------MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Query: 279 MAP--LEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNI 336
           M P  + Q +N+    NV LK L+ L+   +   L N       P         I+ KN 
Sbjct: 573 MLPNLITQAVNA----NVSLKRLEELLLAEERVLLPNPPLEPGLP--------AISIKNG 620

Query: 337 VFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG-LLTLEKGTISFGDR 394
            F  D K  R    N++  +P GS   I G +G GK++ +  MLG L      ++     
Sbjct: 621 YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV----- 675

Query: 395 QISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL 454
            + R         + Y+ Q   +F  ++ +NI+     +     ++   +     D+  L
Sbjct: 676 -VIR-------GTVAYVPQVSWIFNATVRDNILFGSPFDPERY-ERAIDVTALQHDLDLL 726

Query: 455 KNGYQTTYCSDEIPYNIV--QKIRLS--RIIANNPAILLMDEPLYHLDNE-AKNNFYTLL 509
             G  T     E   NI   QK R+S  R + +N  + + D+PL  LD    +  F   +
Sbjct: 727 PGGDLTEI--GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784

Query: 510 KQFKENKKTIVIISHDPTIISMSDFSLIFH 539
           K  +   KT V++++    +S  D  ++ H
Sbjct: 785 KD-ELRGKTRVLVTNQLHFLSQVDRIILVH 813



 Score = 32.0 bits (73), Expect = 0.41
 Identities = 26/100 (26%), Positives = 46/100 (46%)

Query: 327  SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
            S+ +I  +++V R +     +   LSF I       I G +G GKS+ L  +  ++ LE+
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293

Query: 387  GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426
            G I      IS+  +      +G + Q   LF  ++  N+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333


>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 29/232 (12%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQISRDFIE 402
           R I   ++     G    + GPSG GKS  L  + G +      GTI   +R+ ++  ++
Sbjct: 81  RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK 140

Query: 403 KFSAQIGYLSQHCSLFP-ISITENII---LSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458
           +     G+++Q   L+P +++ E ++   L     SL    K  KI+     I  L    
Sbjct: 141 R----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSL---TKQEKILVAESVISELG--- 190

Query: 459 QTTYCSDEIPYNIV---------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509
             T C + I  N           +++ ++  +  NP++L++DEP   LD  A       L
Sbjct: 191 -LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249

Query: 510 KQFKENKKTIVIISHDPT--IISMSDFSLIFHPIQGSLFG-LTQDIFKFNTV 558
               +  KTIV   H P+  +  M D  L+    +   FG  +  +  F +V
Sbjct: 250 GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301


>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 214

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 34/163 (20%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
           L F +  G   ++ G +G GK+  L  + GLL +E G I    +  +R    +F   + Y
Sbjct: 30  LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRF---MAY 86

Query: 411 LSQHCSLFP-ISITENIILSHDQNSLH--IAQKTA----KIVGC--HEDIL--SLKNGYQ 459
           L     L   +S  EN+   H    LH   A++       IVG   +ED L   L  G  
Sbjct: 87  LGHLPGLKADLSTLENL---HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAG-- 141

Query: 460 TTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNE 500
                        QK RL+  R+  +   + L+DEP  +LD E
Sbjct: 142 -------------QKKRLALARLWLSPAPLWLLDEPYANLDLE 171


>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
           Provisional.
          Length = 501

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 436 HIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLY 495
            I     K     + I++L  G Q             QK  L R ++ +  ++L+DEP  
Sbjct: 379 FIRSLNIKTPSREQLIMNLSGGNQ-------------QKAILGRWLSEDMKVILLDEPTR 425

Query: 496 HLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISMSD 533
            +D  AK+  Y ++ +       ++ +S D P ++ ++D
Sbjct: 426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD 464



 Score = 29.1 bits (66), Expect = 3.3
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407
            ++SF    G    + G +G GKS  L  + G    + G+I    +++         +A 
Sbjct: 21  DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80

Query: 408 IGYLSQHCSLFP-ISITENIILSH 430
           +  + Q   L P +++ EN+ L  
Sbjct: 81  VAIIYQELHLVPEMTVAENLYLGQ 104


>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 29/224 (12%)

Query: 329 NTITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
           N I  KN+ F+  +   +    ++SF + +G    I G +G GKS  +  + GLL  E G
Sbjct: 3   NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62

Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT---------ENIILSHDQNSLHIA 438
            I      ++ + +     +IG + Q+     +  T         EN  + H++    + 
Sbjct: 63  QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERV- 121

Query: 439 QKTAKIVGCHE----DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494
            +  ++VG  +    +   L  G +             Q++ ++  +A  P I+++DE  
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQK-------------QRVAIAGAVAMRPKIIILDEAT 168

Query: 495 YHLDNEAKNNFYTLLKQFKE-NKKTIVIISHDPTIISMSDFSLI 537
             LD E +      +K  ++  + T++ I+HD   +++SD  L+
Sbjct: 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLV 212


>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 30/206 (14%)

Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR--- 394
              K   + +  N+S ++  G    + G SGCGKS     ++GL +  +G +S+      
Sbjct: 18  LSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77

Query: 395 QISRDFIEKFSAQIGYLSQHC--SLFPISITENII---LSH-----DQNSLHIAQKTAKI 444
           +++R   + F   I  + Q    ++ P      II   L H         L  A +  + 
Sbjct: 78  KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRA 137

Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNE 500
           V   + +L            D+ P  +    +Q++ L+R +A  P +L++DE + +LD  
Sbjct: 138 VDLDDSVL------------DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185

Query: 501 AKNNFYTLLKQFKENKKT-IVIISHD 525
            +     LLK+ ++   T  + I+HD
Sbjct: 186 LQAGVIRLLKKLQQQFGTACLFITHD 211


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
            model describes the photoreceptor protein (rim protein)
            in eukaryotes. It is the member of ABC transporter
            superfamily. Rim protein is a membrane glycoprotein which
            is localized in the photoreceptor outer segment discs.
            Mutation/s in its genetic loci is implicated in the
            recessive Stargardt's disease.
          Length = 2272

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 28/206 (13%)

Query: 331  ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
            +  KN+V   + + R     L+ T  E       G +G GK+  L  + GLL    GT+ 
Sbjct: 929  VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988

Query: 391  FGDRQISRDFIEKFSAQIGYLSQHCSLF-PISITENIIL-------SHDQNSLHIAQKTA 442
             G + I  + ++     +G   QH  LF  +++ E+I+        S ++  L + +   
Sbjct: 989  VGGKDIETN-LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEM-EAML 1046

Query: 443  KIVGCH----EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498
            +  G H    E+   L  G Q             +K+ ++     +  ++++DEP   +D
Sbjct: 1047 EDTGLHHKRNEEAQDLSGGMQ-------------RKLSVAIAFVGDAKVVVLDEPTSGVD 1093

Query: 499  NEAKNNFYTLLKQFKENKKTIVIISH 524
              ++ + + LL +++   +TI++ +H
Sbjct: 1094 PYSRRSIWDLLLKYRSG-RTIIMSTH 1118



 Score = 28.8 bits (64), Expect = 3.5
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 469  YNIVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
            Y+   K +LS  IA    P ++L+DEP   +D +A+   +  +       + +V+ SH
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128


>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
           protein UrtD.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 242

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 40/200 (20%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407
            +LS  +  G   +I GP+G GK+  +  + G    ++G++ FG   ++    E   A+ 
Sbjct: 19  NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG-LPEHQIARA 77

Query: 408 -IGYLSQHCSLFP-ISITENIILSHDQN-----SLH---------IAQKTAKIVGCHE-- 449
            IG   Q  ++F  +++ EN+ L+  ++     SL            ++  + +G  +  
Sbjct: 78  GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA 137

Query: 450 DIL--SLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNF 505
           D L   L +G               QK  L    ++  +P +LL+DEP+  + +E     
Sbjct: 138 DRLAGLLSHG---------------QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKT 182

Query: 506 YTLLKQFKENKKTIVIISHD 525
             LLK     K ++V++ HD
Sbjct: 183 AELLKSLAG-KHSVVVVEHD 201


>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
           transporter ATP-binding subunit GldA.  Members of this
           protein family are exclusive to the Bacteroidetes phylum
           (previously Cytophaga-Flavobacteria-Bacteroides). GldA
           is an ABC transporter ATP-binding protein (pfam00005)
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
           abolish the gliding phenotype. Gliding motility appears
           closely linked to chitin utilization in the model
           species Flavobacterium johnsoniae. Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility.
          Length = 301

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 35/190 (18%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
           +SF   +G      GP+G GKS  +  + G L  + G++      + ++  E     IGY
Sbjct: 21  VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGY 79

Query: 411 LSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGC----------HEDILSLKNGYQ 459
           L +H  L+  + + E +        +       ++             H+ I  L  GY+
Sbjct: 80  LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYR 139

Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519
                        Q++ L++ + ++P +L++DEP   LD            Q  E +  I
Sbjct: 140 -------------QRVGLAQALIHDPKVLILDEPTTGLDP----------NQLVEIRNVI 176

Query: 520 VIISHDPTII 529
             I  D TII
Sbjct: 177 KNIGKDKTII 186


>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 204

 Score = 40.9 bits (97), Expect = 8e-04
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 26/190 (13%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCML-GLLTLEKGTISFGDRQISRDFIEK 403
           R++   LSFT+  G    I GP+G GK++ LL +L GL   + G + +    I R   ++
Sbjct: 14  RILFSGLSFTLNAGELVQIEGPNGAGKTS-LLRILAGLARPDAGEVLWQGEPIRRQR-DE 71

Query: 404 FSAQIGYLSQHCSLFP-ISITENII----LSHDQNSLHIAQKTAKIVGCH--EDIL--SL 454
           +   + YL     +   ++  EN+     L    +   + +  A+ VG    ED+    L
Sbjct: 72  YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ-VGLAGFEDVPVRQL 130

Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
             G Q             +++ L+R+      + ++DEP   +D +       LL Q  E
Sbjct: 131 SAGQQ-------------RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177

Query: 515 NKKTIVIISH 524
               +++ +H
Sbjct: 178 QGGMVILTTH 187


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 21/197 (10%)

Query: 331 ITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT-LEKGT 388
           I+ KN  F  D KTS+    +++  IP GS   I G +G GK++ +  MLG L+  E  +
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674

Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCH 448
           +                  + Y+ Q   +F  ++ ENI+   D  S    +        H
Sbjct: 675 VV-------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQH 721

Query: 449 EDILSLKNGYQTTYCSDE---IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE-AKNN 504
           +  L L  G   T   +    I     Q++ ++R + +N  I + D+PL  LD   A   
Sbjct: 722 D--LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779

Query: 505 FYTLLKQFKENKKTIVI 521
           F + +K   + K  +++
Sbjct: 780 FDSCMKDELKGKTRVLV 796



 Score = 39.6 bits (92), Expect = 0.002
 Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 271  TSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNT 330
            T  IT      L Q   ++ SLN    S++ + N  D  +   +      P+S   S  +
Sbjct: 1179 TLNITTLLSGVLRQASKAENSLN----SVERVGNYIDLPSEATAIIENNRPVSGWPSRGS 1234

Query: 331  ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
            I  +++  R +     +   LSF +       + G +G GKS+ L  +  ++ LEKG I 
Sbjct: 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM 1294

Query: 391  FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI--ILSHDQNSLHIAQKTAKIVGCH 448
              D  +++  +      +  + Q   LF  ++  NI     H+   L  A + A I    
Sbjct: 1295 IDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI---- 1350

Query: 449  EDILSLKN-GYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
            +D++     G           +++ Q+  + L+R +     IL++DE    +D    +  
Sbjct: 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410

Query: 506  Y-TLLKQFKENKKTIVIISH 524
              T+ ++FK    T+++I+H
Sbjct: 1411 QRTIREEFKSC--TMLVIAH 1428


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 17/205 (8%)

Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RD 399
           KK  R+I  N+   +  G+   + G SG GK+  L  +   +T   G I+ GDR ++ R 
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--GVITGGDRLVNGRP 829

Query: 400 FIEKFSAQIGYLSQH-CSLFPISITENIILS---HDQNSLHIAQK---TAKIVGCHEDIL 452
               F   IGY+ Q    L   ++ E++  S       S+  ++K     +++     +L
Sbjct: 830 LDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVI----KLL 885

Query: 453 SLKNGYQTTYCSDEIPYNIVQKIRLS---RIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509
            +++             N+ Q+ RL+    ++A    +L +DEP   LD++   +   L+
Sbjct: 886 EMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945

Query: 510 KQFKENKKTIVIISHDPTIISMSDF 534
           ++  ++ + I+   H P+ I   +F
Sbjct: 946 RKLADHGQAILCTIHQPSAILFEEF 970


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 19/223 (8%)

Query: 326 LSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE 385
           L +  I   N+ F   +   L+ QN++ ++P      + G +G GKS     ++G   L 
Sbjct: 336 LQSGRIDIDNVSFA-YRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT 394

Query: 386 KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLF---PI----SITENIILSHDQNSLHIA 438
           +G I    R +S       S  +  L Q  ++    P+    +   N+ L  D +   + 
Sbjct: 395 EGEIRLDGRPLSS-----LSHSV--LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447

Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYH 496
           Q     V   E   SL +G  T         ++ QK  + L+R++   P IL++DE   +
Sbjct: 448 QALET-VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506

Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFH 539
           +D+  +      L   +E   T+V+I+H  + I  +D  L+ H
Sbjct: 507 IDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLH 548


>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
          Length = 718

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 37/196 (18%)

Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR-------QISR 398
           L+ +NL+F I   S   + GP+G GKS  L  + G L    GT+    +       Q   
Sbjct: 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV 582

Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458
           D ++  S  + Y+   C  FP  + E  + +H   S  +    A      + + +L  G 
Sbjct: 583 DGLDLSSNPLLYMM-RC--FP-GVPEQKLRAH-LGSFGVTGNLAL-----QPMYTLSGG- 631

Query: 459 QTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
                         QK R++  +I    P ILL+DEP  HLD +A       L  F+   
Sbjct: 632 --------------QKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGG- 676

Query: 517 KTIVIISHDPTIISMS 532
             ++++SHD  +IS S
Sbjct: 677 --VLMVSHDEHLISGS 690



 Score = 34.1 bits (78), Expect = 0.092
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
           +I L+R +   P +LL+DEP  HLD  A     T L ++    KT +++SH
Sbjct: 352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSH 399


>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
           ATP-binding protein; Provisional.
          Length = 491

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD-PTIISM 531
           QK+ + R +   P IL++DEP   +D  AK   Y L+ +  +  K I+IIS + P ++ +
Sbjct: 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI 457

Query: 532 SD 533
           +D
Sbjct: 458 TD 459



 Score = 35.1 bits (81), Expect = 0.051
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
           Q I +++  + N  I++MDEP   L  +  N+ +T++++ KE    IV ISH
Sbjct: 141 QMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192



 Score = 27.4 bits (61), Expect = 9.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI 396
           N++  +   S   + G +G GKS  L C+ G+   + G+I F  ++I
Sbjct: 16  NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62


>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
           Provisional.
          Length = 258

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR 394
           R  C+++SF +  G    I G SG GK+  L  +   L  + G + +  R
Sbjct: 19  RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68


>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
           ATP-binding protein; Provisional.
          Length = 330

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 468 PYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TIVII 522
           PY +     QK+ ++  +AN P +L+ DEP   ++   +   + LL +  +N   TI++I
Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215

Query: 523 SHDPTIIS 530
           SHD  ++S
Sbjct: 216 SHDLQMLS 223


>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
           subunit; Provisional.
          Length = 265

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL-LTLE 385
           S+ T   +N+ FR     R +   LS T P G    + G +G GKS  LL MLG      
Sbjct: 8   SDTTFALRNVSFR--VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKST-LLKMLGRHQPPS 64

Query: 386 KGTISFGDRQISRDFIEKFSAQIGYLSQ 413
           +G I    + +     + F+ ++ YL Q
Sbjct: 65  EGEILLDAQPLESWSSKAFARKVAYLPQ 92


>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
           YbbA; Provisional.
          Length = 228

 Score = 38.2 bits (89), Expect = 0.005
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 33/182 (18%)

Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIE---KFSAQ-IGYLSQHCSLFP- 419
           G SG GKS  L  + GL     G +S   + + +   E   K  A+ +G++ Q   L P 
Sbjct: 43  GESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102

Query: 420 ISITENIIL------SHDQNSLHIAQKTAKIVGCHEDIL----SLKNGYQTTYCSDEIPY 469
           ++  EN+ L         + S + A+   + +G  + +      L  G Q          
Sbjct: 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ---------- 152

Query: 470 NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK---TIVIISHDP 526
              Q++ L+R     P +L  DEP  +LD +  +    LL  F  N++   T+++++HD 
Sbjct: 153 ---QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FSLNREHGTTLILVTHDL 207

Query: 527 TI 528
            +
Sbjct: 208 QL 209


>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
          Length = 1560

 Score = 38.2 bits (89), Expect = 0.006
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 22/155 (14%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
           +++S ++P G   ++ G +G GKS  L  +L    + +G + + +R I+           
Sbjct: 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA----------- 724

Query: 409 GYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE---DILSLKNGYQTTYCSD 465
            Y+ Q   +   ++  NI+   +++    A + A  V   +   D+  L  G +T     
Sbjct: 725 -YVPQQAWIMNATVRGNILFFDEED----AARLADAVRVSQLEADLAQLGGGLETEIGEK 779

Query: 466 EIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLD 498
            +  +  QK R+S  R +  N  + L+D+PL  LD
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814



 Score = 29.0 bits (65), Expect = 3.4
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 330  TITAKNIVFRD-----KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL 384
             + A ++VF       ++   L+ + +SF I       I G +G GKS  LL  + ++ +
Sbjct: 1303 PVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV 1362

Query: 385  EKGTI--------SFGDRQISRDF 400
              G I        ++G R++ R F
Sbjct: 1363 CGGEIRVNGREIGAYGLRELRRQF 1386


>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
           Provisional.
          Length = 257

 Score = 37.3 bits (87), Expect = 0.011
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 27/162 (16%)

Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--RDFI 401
            R +   L   IP G    + G SGCGKS  L  + GL T   G +  G   ++  R+  
Sbjct: 24  ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEARE-- 81

Query: 402 EKFSAQIGYLSQHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVG----CHEDILSLKN 456
                    + Q   L P   + +N+ L         A +    VG     +E   +L  
Sbjct: 82  -----DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSG 136

Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498
           G +             Q++ L+R + + P +LL+DEPL  LD
Sbjct: 137 GQK-------------QRVALARALIHRPGLLLLDEPLGALD 165


>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 37.3 bits (86), Expect = 0.011
 Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 15/175 (8%)

Query: 363 IAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSAQIGYLSQ--HCSLF 418
           + G +GCGKS   + + GLL  +KG + +  + +  S+  +     Q+  + Q     +F
Sbjct: 32  LVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91

Query: 419 PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG----YQTTYCSDEIPYNIVQK 474
              I  +I  S    +L + +  A+I    ++ L+L +     +Q   C   + +   ++
Sbjct: 92  YTDIDSDIAFS--LRNLGVPE--AEITRRVDEALTLVDAQHFRHQPIQC---LSHGQKKR 144

Query: 475 IRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
           + ++  +      LL+DEP   LD   +     ++++       ++I SHD  +I
Sbjct: 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI 199


>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
           Family protei. 
          Length = 659

 Score = 37.0 bits (86), Expect = 0.013
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
           ++LSF +P G+  +I GP+GCGKS+    +  L  +  G ++
Sbjct: 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT 510


>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 36.2 bits (84), Expect = 0.025
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 327 SNNTITAKNIVFR----DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382
            N  I  KN+ ++    ++ T +L   +++  + +G   +I G +G GKS     M  LL
Sbjct: 1   MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60

Query: 383 TLEKGTI 389
              +G +
Sbjct: 61  IPSEGKV 67



 Score = 29.7 bits (67), Expect = 1.9
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE-NKK---TIVIISH 524
           Q++ ++ I+A  P  ++ DEP   LD   +     ++   KE NKK   TI++I+H
Sbjct: 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRRE---VVNTIKELNKKYGITIILITH 203


>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 35.1 bits (81), Expect = 0.042
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 37/190 (19%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
           R+I  ++   +  GS   + G +G GKS  +  + G L    G I               
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK----------- 373

Query: 405 SAQIGYLSQHCSLFPISITENIILSHDQNSL-HIAQKTAKIVGCHEDILSLKN-----GY 458
             ++GY +QH   F         L  D++ L H+A+   +     E    L++     G+
Sbjct: 374 GIKLGYFAQHQLEF---------LRADESPLQHLARLAPQ-----ELEQKLRDYLGGFGF 419

Query: 459 QTTYCSDEIP-YNIVQKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
           Q    ++E   ++  +K RL  + I+   P +LL+DEP  HLD + +      L  F   
Sbjct: 420 QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--- 476

Query: 516 KKTIVIISHD 525
           +  +V++SHD
Sbjct: 477 EGALVVVSHD 486



 Score = 33.2 bits (76), Expect = 0.17
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 14/68 (20%)

Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF-----SLIFHPI 541
           +LL+DEP  HLD +A      L K  K  + T+++ISHD       DF       I H  
Sbjct: 170 LLLLDEPTNHLDLDA---VIWLEKWLKSYQGTLILISHD------RDFLDPIVDKIIHIE 220

Query: 542 QGSLFGLT 549
           Q SLF  T
Sbjct: 221 QQSLFEYT 228



 Score = 32.4 bits (74), Expect = 0.29
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 336 IVFRD---KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
           IVF     ++  R++  N + TI  G    + G +GCGKS  L  +   ++ + G+ +F
Sbjct: 2   IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 34.6 bits (80), Expect = 0.070
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG-- 409
           S T+  G      G +G GKS     + G L L  G        I+R   E+    +   
Sbjct: 23  SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82

Query: 410 -------YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
                   LS        +  E I       +    ++ A+  G    +L  +  Y +T 
Sbjct: 83  WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPAR--CEQLAQQFGI-TALLDRRFKYLSTG 139

Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522
            +        +K  L + + + P +L++DEP   LD  ++     LL    ++  T+V++
Sbjct: 140 ET--------RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191



 Score = 33.8 bits (78), Expect = 0.11
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 31/173 (17%)

Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG--------LLTLEKGTISFGDRQI 396
           R I  NLS+ +  G    I GP+G GKS  L  + G         LTL      FG R+ 
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL------FGRRRG 326

Query: 397 SRDFIEKFSAQIGYLSQHCSL-FPISIT-ENIILSHDQNSLHIAQKTA----KIVGCHED 450
           S + I      IGY+S    L + +S +  N+ILS   +S+ I Q  +    K+     D
Sbjct: 327 SGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLD 386

Query: 451 ILSLKNGYQTTYCSDEIPYNIV----QKIRL-SRIIANNPAILLMDEPLYHLD 498
           IL +             P++ +    Q++ L  R +  +P +L++DEPL  LD
Sbjct: 387 ILGIDKRTADA------PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433


>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 195

 Score = 34.5 bits (79), Expect = 0.078
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 23/186 (12%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
           +LS T    +   I G +GCGKS+ L  + G++    G I + +  I+   I K      
Sbjct: 18  DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN--IAK--PYCT 73

Query: 410 YLSQHCSL-FPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468
           Y+  +  L   +++ EN+               ++I    E + +  + ++     DE  
Sbjct: 74  YIGHNLGLKLEMTVFENLKF------------WSEIYNSAETLYAAIHYFKLHDLLDEKC 121

Query: 469 YN----IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII-S 523
           Y+    + + + ++R+IA    + L+DE   +L  E ++    L+   K N   IV++ S
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV-MKANSGGIVLLSS 180

Query: 524 HDPTII 529
           H  + I
Sbjct: 181 HLESSI 186


>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 272

 Score = 34.0 bits (78), Expect = 0.092
 Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 37/219 (16%)

Query: 337 VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT---LEKGTISFGD 393
           V R     R I ++LS  I  G    + G +G GKS  L  + G LT     +G    GD
Sbjct: 9   VARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD 65

Query: 394 --------RQISRDFIEKFSAQIGYLSQHCSLFPISITENIILS---HDQNSLHIAQKTA 442
                     I    + +  A +   +Q    F  S  E ++L    H + +  +  +  
Sbjct: 66  VTLNGEPLAAIDAPRLARLRAVLPQAAQPA--FAFSAREIVLLGRYPHARRAGALTHRDG 123

Query: 443 KIVGC---HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIAN---------NPAILLM 490
           +I           +L     TT    E+      +++ +R++A           P  LL+
Sbjct: 124 EIAWQALALAGATALVGRDVTTLSGGEL-----ARVQFARVLAQLWPPHDAAQPPRYLLL 178

Query: 491 DEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTI 528
           DEP   LD   ++     +++  ++    ++ I HDP +
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
           activities.  AAA - ATPases associated with a variety of
           cellular activities. This profile/alignment only detects
           a fraction of this vast family. The poorly conserved
           N-terminal helix is missing from the alignment.
          Length = 148

 Score = 33.9 bits (77), Expect = 0.11
 Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 56/178 (31%)

Query: 358 GSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSL 417
           G   +I GP G GK+     +   L    G + + D                        
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID------------------------ 37

Query: 418 FPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL 477
                 E+I+       L I     K  G  E                        ++ L
Sbjct: 38  -----GEDILEEVLDQLLLIIVGGKKASGSGELR---------------------LRLAL 71

Query: 478 SRIIANNPAILLMDEPLYHLDNE------AKNNFYTLLKQFKENKKTIVIISHDPTII 529
           +      P +L++DE    LD E             LL    E   T+++ ++D   +
Sbjct: 72  ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129


>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
           Provisional.
          Length = 352

 Score = 33.7 bits (78), Expect = 0.13
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 16/151 (10%)

Query: 354 TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA-----QI 408
           T+P      I G SG GK++ +  + GL   +KG I    R +  D  +         +I
Sbjct: 20  TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF-DAEKGICLPPEKRRI 78

Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467
           GY+ Q   LFP   +  N+     ++      +  KIV     I  L + Y  +    E 
Sbjct: 79  GYVFQDARLFPHYKVRGNLRYGMAKSM---VAQFDKIVALL-GIEPLLDRYPGSLSGGE- 133

Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498
                Q++ + R +   P +LLMDEPL  LD
Sbjct: 134 ----KQRVAIGRALLTAPELLLMDEPLASLD 160


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 33.7 bits (77), Expect = 0.14
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
           G  E I SL  G +T             ++ +++ + N+ ++L+MDEP   LD + + N 
Sbjct: 794 GMVEGIDSLSGGEKTAVA-------FALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNL 846

Query: 506 YTLLKQFKENKKTI---VIISHDPTIISMSDFSLIFHPIQGS 544
             +++   ++   I   ++ISH   ++S++D +       GS
Sbjct: 847 KDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKSSGS 888


>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 33.0 bits (76), Expect = 0.19
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
           ++ TI  G    + G +G GKS   + + GL   + G I    + ++ +  E +      
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401

Query: 411 LSQHCSLFPISITENIILSHD---QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467
           +     LF   +      ++    +  L   +   K        L L++G  +      +
Sbjct: 402 VFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHK--------LELEDGRISN-----L 448

Query: 468 PYNIVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENKKTIVIISH 524
             +  QK RL+ ++A      ILL+DE     D   +  FY  LL   +E  KTI  ISH
Sbjct: 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508

Query: 525 DPTIISMSDFSLIFHPIQGSLFGLTQDI 552
           D      +D  L      G L  LT + 
Sbjct: 509 DDHYFIHADRLLEMR--NGQLSELTGEE 534


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 32.9 bits (75), Expect = 0.20
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 485  PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF 534
            P + L+DE    LDN+ K+     L+       +++ I HDP ++  +D+
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADY 1770


>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
           Provisional.
          Length = 254

 Score = 32.7 bits (75), Expect = 0.23
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382
               I  +NI     + ++ +   +S T+  G    + G SG GKS      LG+L
Sbjct: 1   MPQQIELRNIAL---QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53


>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
           protein OppF; Provisional.
          Length = 331

 Score = 32.8 bits (75), Expect = 0.25
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
           +  + EG    + G SGCGKS F   ++GL+    G +++
Sbjct: 41  TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80



 Score = 29.3 bits (66), Expect = 2.5
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIIS- 530
           Q+I ++R +   P +++ DEP+  LD   +     LL+Q  +E   +++ I+HD  ++  
Sbjct: 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKH 227

Query: 531 MSDFSLI 537
           +SD  L+
Sbjct: 228 ISDRVLV 234


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 32.1 bits (74), Expect = 0.38
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIISM-SDFSLIF 538
           + L+DEP  HLD E +      +++  +E + T +++ HD  +I   SD  ++F
Sbjct: 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527


>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
           subunit; Provisional.
          Length = 264

 Score = 32.1 bits (73), Expect = 0.41
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
           K+  S  I  NP IL++DE L   D          + +FKE  KTI  +SH+
Sbjct: 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202


>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 31.9 bits (72), Expect = 0.42
 Identities = 20/81 (24%), Positives = 38/81 (46%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMS 532
           Q + L+ I+   P  L+ DE    LD ++       +K+  E  KTIV I+H+   +  +
Sbjct: 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDA 202

Query: 533 DFSLIFHPIQGSLFGLTQDIF 553
           D  ++    +  L G  +++ 
Sbjct: 203 DRIIVMDRGKIVLEGEPENVL 223



 Score = 28.8 bits (64), Expect = 3.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
           +N++  I +G    I G +G GKS   L + GLL  +KG +
Sbjct: 19  ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59


>gnl|CDD|177488 PHA02774, PHA02774, E1; Provisional.
          Length = 613

 Score = 31.4 bits (72), Expect = 0.65
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT-ISF 391
           IP+ +C +I GP   GKS F  CM  L+   KG  ISF
Sbjct: 431 IPKKNCLVIYGPPDTGKSMF--CM-SLIKFLKGKVISF 465


>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
           Provisional.
          Length = 330

 Score = 31.2 bits (71), Expect = 0.74
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFK-ENKKTIVIISHDPTIIS-MSDFSLIFHPIQ 542
           P +L+ DEP   LD   +    TLL + K E    I++I+HD  +++ + D  L+ +  +
Sbjct: 180 PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239

Query: 543 GSLFGLTQDIF 553
              +G  +D+F
Sbjct: 240 TMEYGNARDVF 250



 Score = 29.7 bits (67), Expect = 2.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT---LEKGTISFGDRQI 396
           +L+F++  G    I G SG GKS     ++GLL       G+ +F  R+I
Sbjct: 34  DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREI 83


>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 255

 Score = 31.1 bits (71), Expect = 0.88
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 36/210 (17%)

Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
           N++  + E     + GP+G GK+    C+ G      GTI    + I      +  A++G
Sbjct: 23  NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI-ARMG 81

Query: 410 YLS--QHCSLF-PISITENIILS-HDQ---NSLHIAQKTA-----------------KIV 445
            +   QH  LF  +++ EN++++ H Q          KT                  + V
Sbjct: 82  VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141

Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
           G    +L   N          + Y   +++ ++R +   P IL++DEP   L+ +     
Sbjct: 142 G----LLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192

Query: 506 YTLLKQFK-ENKKTIVIISHD-PTIISMSD 533
             L+ + + E+  T+++I HD   ++ +SD
Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLVMGISD 222


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 31.0 bits (70), Expect = 0.88
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 484  NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTI 528
            NP+I+ MDEP   LD  A       ++   +  +T+V   H P+I
Sbjct: 1037 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081


>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC.  SufC is part of the SUF
           system, shown in E. coli to consist of six proteins and
           believed to act in Fe-S cluster formation during
           oxidative stress. SufC forms a complex with SufB and
           SufD. SufC belongs to the ATP-binding cassette
           transporter family (pfam00005) but is no longer thought
           to be part of a transporter. The complex is reported as
           cytosolic (PubMed:12554644) or associated with the
           membrane (PubMed:11943156). The SUF system also includes
           a cysteine desulfurase (SufS, enhanced by SufE) and a
           probable iron-sulfur cluster assembly scaffold protein,
           SufA.
          Length = 243

 Score = 30.3 bits (69), Expect = 1.3
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQIS 397
           I + ++ T+ +G    I GP+G GKS     + G  + E   GTI F  + + 
Sbjct: 15  ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67


>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 326

 Score = 30.1 bits (68), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL 382
           F D+         +S+++ +G    I G SG GKS   L ++GL+
Sbjct: 13  FGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57


>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family.  This
           model represents a rather narrowly distributed archaeal
           protein family in which members have a single copy of
           the KaiC domain. This stands in contrast to the
           circadian clock protein KaiC itself, with two copies of
           the domain. Members are expected to have weak ATPase
           activity, by homology to the
           autokinase/autophosphorylase KaiC itself.
          Length = 224

 Score = 30.1 bits (68), Expect = 1.5
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 40/174 (22%)

Query: 355 IPEGSCCIIAGPSGCGKSNFLLCML--GLLTLEKGT-ISFGDR--QISRDFIEKFSAQIG 409
            PEG   ++ G  G GK+ F L  L  GL   EK   IS  +R  +I      K      
Sbjct: 13  FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLED 72

Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469
           Y+ +                    SL+I +          +   +KN         E+P 
Sbjct: 73  YIDK--------------------SLYIVRLDPSDFKTSLN--RIKN---------ELP- 100

Query: 470 NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
            +++++  SR++ +  ++L   E L+  D E +   +      +E   T ++ S
Sbjct: 101 ILIKELGASRVVIDPISLL---ETLFDDDAERRTELFRFYSSLRETGVTTILTS 151


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 30.1 bits (68), Expect = 1.7
 Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
           + LSFT+ EG    I G +G GKS     + G++    G +   D  +        S +I
Sbjct: 30  KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89

Query: 409 GYLSQHCS-----------LFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG 457
             + Q  S           +    +  N  L  +Q    I + T + VG   D       
Sbjct: 90  RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIE-TLRQVGLLPD------- 141

Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
              +Y    +     Q++ L+R +   P +++ DE L  LD   ++    L+ + +E + 
Sbjct: 142 -HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200

Query: 518 T--IVIISHDPTIISMSDFSLIFH 539
              I +  H   +  +SD  L+ H
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMH 224


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 29.6 bits (67), Expect = 2.0
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPT---------IISM 531
           +  +P +L  DEP   LD+    +   +LK   +  KTI+   H P+         II M
Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240

Query: 532 SDFSLIFH 539
           ++  + + 
Sbjct: 241 AEGRVAYL 248


>gnl|CDD|179788 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional.
          Length = 601

 Score = 29.8 bits (68), Expect = 2.1
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 351 LSFTIPEGSCCIIAG--PSGCGKSNFLLCMLG 380
           L  T PEG     A   PS CGK+N    ML 
Sbjct: 247 LGVTSPEGRKTYFAAAFPSACGKTNL--AMLI 276


>gnl|CDD|183088 PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme
           subunit McrB; Provisional.
          Length = 459

 Score = 29.3 bits (65), Expect = 2.5
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 305 LNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIA 364
           +ND+  + NS  S   P+S   S     A N +F  + T   I + L+         I+ 
Sbjct: 145 INDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKRLTIK----KNIILQ 200

Query: 365 GPSGCGKSNFLLCMLGLLTLEKG-----TISFGDRQISRDFIEKF 404
           GP G GK+     +  LLT EK       + F       DFI+ +
Sbjct: 201 GPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245


>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit.  This family is based
           on the phylogenomic analysis of JA Eisen (1999, Ph.D.
           Thesis, Stanford University).
          Length = 924

 Score = 29.2 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 349 QNLSFTIPEGSCCIIAGPSGCGKS 372
           +N++ +IP G    I G SG GKS
Sbjct: 624 KNITVSIPLGLFTCITGVSGSGKS 647



 Score = 27.7 bits (62), Expect = 9.4
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
           Q+I+L++ +   +    + ++DEP   L  +       +L++  +   T+V+I H+  +I
Sbjct: 835 QRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVI 894

Query: 530 SMSDF 534
             +D+
Sbjct: 895 KTADY 899


>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
           bacterial type.  SMC (structural maintenance of
           chromosomes) proteins bind DNA and act in organizing and
           segregating chromosomes for partition. SMC proteins are
           found in bacteria, archaea, and eukaryotes. This family
           represents the SMC protein of most bacteria. The smc
           gene is often associated with scpB (TIGR00281) and scpA
           genes, where scp stands for segregation and condensation
           protein. SMC was shown (in Caulobacter crescentus) to be
           induced early in S phase but present and bound to DNA
           throughout the cell cycle.
          Length = 1179

 Score = 29.3 bits (66), Expect = 2.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 363 IAGPSGCGKSN 373
           I GP+GCGKSN
Sbjct: 28  IVGPNGCGKSN 38


>gnl|CDD|162097 TIGR00898, 2A0119, cation transport protein. 
          Length = 505

 Score = 29.2 bits (66), Expect = 2.9
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 55  LIALSTITLFLYALFFGFDLIRS-RLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSII 113
           L    ++  FL+ L   F +  S R LI     IE   K  +  + K   ++G  L + +
Sbjct: 245 LQLAVSLPTFLFFLLSWF-VPESPRWLISQGR-IEEALK-ILQRIAK---INGKKLPAEV 298

Query: 114 SSLDQLKQFITSPVLPALLDILFTPIFIILSFC 146
            SL   K   +S    + LD+  TP     + C
Sbjct: 299 LSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLC 331


>gnl|CDD|182970 PRK11111, PRK11111, hypothetical protein; Provisional.
          Length = 214

 Score = 29.1 bits (66), Expect = 2.9
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 16 SFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQS-----KINLIA-LSTITLFLYALF 69
          + F  +I   FFI +  L NP+ ++ ++ S+   Q+     K NL A LS   + L +LF
Sbjct: 3  TLFDFSIYIKFFIGLFALVNPVGILPVFISMTSHQTAAERNKTNLTANLSVAIILLISLF 62

Query: 70 FG 71
           G
Sbjct: 63 LG 64


>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 327

 Score = 28.8 bits (65), Expect = 3.5
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)

Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLG-LLTL 384
           SFT+  G    + G SGCGKS      L  LLT+
Sbjct: 35  SFTLERGKTLAVVGESGCGKST-----LARLLTM 63



 Score = 28.4 bits (64), Expect = 4.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAK----NNFYTLLKQFKENKKTIVIISHD 525
           Q+I ++R +  +P +++ DEP+  LD   +    N    L ++      + V ISHD
Sbjct: 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL---GLSYVFISHD 214


>gnl|CDD|130320 TIGR01253, thiP, thiamine ABC transporter, permease protein.  The
           model describes thiamine ABC transporter, permease
           protein in bacteria. The protein belongs to the larger
           ABC transport system. It consists of atleast three
           components: the inner mebrane permease; thiamine binding
           protein; an ATP-binding subunit. It has been
           experimentally demonstrated that the mutants in the
           various steps in the de novo synthesis of the thiamine
           and the biologically active form, namely thiamine
           pyrophosphate can be exogenously supplemented with
           thiamine, thiamine monophosphate (TMP) or thiamine
           pyrophosphate (TPP).
          Length = 519

 Score = 28.3 bits (63), Expect = 6.1
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 30/162 (18%)

Query: 59  STITLFLY-ALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEM---DGTSLFSIIS 114
           +TI L +Y A+ F FDL ++ L      L++      +  +++++     +G SL +   
Sbjct: 217 TTIELAIYQAILFDFDLAKAALFA----LLQFVCCLGLFLLSQRFSKAIANGLSLLNGWF 272

Query: 115 SLD---QLKQFITSPVLPALLDILFTPIFIIL----------SFCIHPILG-------SW 154
             D     K      +L AL   LF P+  I+              +P L          
Sbjct: 273 DPDDKLASKICDILLILLALF-FLFPPLLAIIIDALNSRNLLEVLANPQLWQALGTSLRI 331

Query: 155 AILSGILLLTITILFQANNERLE-RRYKKSRQDEINFGKAIL 195
           A+ + +L LT+ I     +  LE     K+ Q     G  IL
Sbjct: 332 ALAAALLALTLAIALLLLSRELEALHKMKAGQFIEMAGMLIL 373


>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
           primarily archaeal type.  SMC (structural maintenance of
           chromosomes) proteins bind DNA and act in organizing and
           segregating chromosomes for partition. SMC proteins are
           found in bacteria, archaea, and eukaryotes. It is found
           in a single copy and is homodimeric in prokaryotes, but
           six paralogs (excluded from this family) are found in
           eukarotes, where SMC proteins are heterodimeric. This
           family represents the SMC protein of archaea and a few
           bacteria (Aquifex, Synechocystis, etc); the SMC of other
           bacteria is described by TIGR02168. The N- and
           C-terminal domains of this protein are well conserved,
           but the central hinge region is skewed in composition
           and highly divergent.
          Length = 1164

 Score = 28.1 bits (63), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)

Query: 362 IIAGPSGCGKSNF---LLCMLGLLT 383
           +I+GP+G GKSN    +L  LGL +
Sbjct: 27  VISGPNGSGKSNIGDAILFALGLSS 51


>gnl|CDD|183944 PRK13280, PRK13280, N-glycosylase/DNA lyase; Provisional.
          Length = 269

 Score = 28.1 bits (63), Expect = 7.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 468 PYN---IVQKI-RLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF--KENKKTIV 520
             N   + QKI R+ ++     ++ L+D PLY+ D E       L K    K+  KT+V
Sbjct: 97  KGNRRLLEQKIKRIEKVEPFLESLTLLDLPLYYEDLEELLEQ--LAKILGAKKESKTVV 153


>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
          Length = 880

 Score = 27.7 bits (62), Expect = 8.5
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
           LS  +A N  +L++DEP   LD E +     +++++      ++I+SHD
Sbjct: 805 LSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHD 853


>gnl|CDD|162811 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
           Members of this family, all eukaryotic, are part of the
           group II chaperonin complex called CCT (chaperonin
           containing TCP-1) or TRiC. The archaeal equivalent group
           II chaperonin is often called the thermosome. Both are
           somewhat related to the group I chaperonin of bacterial,
           GroEL/GroES. This family consists exclusively of the CCT
           gamma chain (part of a paralogous family) from animals,
           plants, fungi, and other eukaryotes.
          Length = 525

 Score = 27.4 bits (61), Expect = 9.3
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

Query: 476 RLSRIIANNPAILLMDEPLYHLDNEAKNN--------FYTLLKQFKENKKTIV--IISHD 525
           ++ R I  NP I+L+D PL +   E++ N        +  +L+  +E  + +   II+  
Sbjct: 224 KMRRYI-ENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVK 282

Query: 526 PTII 529
           P ++
Sbjct: 283 PDLV 286


>gnl|CDD|180381 PRK06067, PRK06067, flagellar accessory protein FlaH; Validated.
          Length = 234

 Score = 27.2 bits (61), Expect = 10.0
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 18/80 (22%)

Query: 355 IPEGSCCIIAGPSGCGKSNFL-LCMLGLL---------TLEKGTISF--GDRQISRDFIE 402
           IP  S  +I G  G GKS      + G L         T E  + S+      +  D  +
Sbjct: 22  IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81

Query: 403 KFSAQIGYLSQHCSLFPISI 422
            F    GYL     +FP++ 
Sbjct: 82  FFL--WGYL----RIFPLNT 95


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,926,003
Number of extensions: 583509
Number of successful extensions: 2368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2181
Number of HSP's successfully gapped: 373
Length of query: 565
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 467
Effective length of database: 3,876,889
Effective search space: 1810507163
Effective search space used: 1810507163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.0 bits)