Query gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 361 No_of_seqs 128 out of 2077 Neff 9.8 Searched_HMMs 23785 Date Mon May 30 10:29:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764468.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1cxy_A Cytochrome B5; helix, b 6.2 92 0.0039 9.1 0.7 25 189-213 13-37 (90) 2 3iyz_A Aquaporin-4; water tran 5.7 1E+02 0.0044 8.8 8.0 20 4-23 51-70 (340) 3 2czr_A TBP-interacting protein 5.5 1.1E+02 0.0045 8.7 0.9 17 121-137 2-18 (226) 4 3my2_A Lipopolysaccharide expo 5.5 1.1E+02 0.0046 8.7 7.0 38 169-207 61-99 (175) 5 1eue_A Cytochrome B5; heme, el 5.3 1.1E+02 0.0047 8.6 1.4 24 189-212 10-33 (86) 6 2jq5_A SEC-C motif; structural 5.3 1.1E+02 0.0048 8.6 3.3 35 174-208 92-126 (128) 7 2iub_A CORA, divalent cation t 4.3 1.5E+02 0.0062 8.0 3.3 15 318-332 312-326 (363) 8 2z3x_A SAsp, small, acid-solub 4.2 1.5E+02 0.0064 7.9 1.4 19 121-139 4-22 (63) 9 2keo_A Probable E3 ubiquitin-p 4.2 85 0.0036 9.3 -1.3 53 161-213 1-53 (112) 10 2d9s_A CBL E3 ubiquitin protei 4.1 1.5E+02 0.0065 7.9 -0.0 41 83-123 10-50 (53) No 1 >1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Probab=6.23 E-value=92 Score=9.12 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=15.9 Q ss_pred EEEEEEECCCCEEEEECCEEEEECC Q ss_conf 5002572289569987787888517 Q gi|255764468|r 189 AQSGSIDLDRQAIILNDGEVHRKSP 213 (361) Q Consensus 189 A~~~~~~~~~~~~~l~~g~~~~~~~ 213 (361) ++-++-+..++-|+..+|.+|+..+ T Consensus 13 ~Ev~~Hn~~~d~Wivi~g~VYDvT~ 37 (90) T 1cxy_A 13 EQVAEHHSPDDCWMAIHGKVYDLTP 37 (90) T ss_dssp HHHTTCEETTEEEEEETTEEEECTT T ss_pred HHHHHHCCCCCEEEEECCEEEECHH T ss_conf 9999658988879999999961499 No 2 >3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Probab=5.66 E-value=1e+02 Score=8.82 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 68999999999999999999 Q gi|255764468|r 4 FELYILRCIGRSFLMSCLFI 23 (361) Q Consensus 4 l~rYi~k~~l~~f~~~~~~l 23 (361) +.|=++-||+.+|++++++. T Consensus 51 f~R~~lAEFiGT~llvf~g~ 70 (340) T 3iyz_A 51 FWKAVTAEFLAMLIFVLLSV 70 (340) T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 No 3 >2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} SCOP: c.52.4.1 Probab=5.51 E-value=1.1e+02 Score=8.74 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 12788776544455654 Q gi|255764468|r 121 IEPKCRSTIKQLSAKAQ 137 (361) Q Consensus 121 i~P~~~~~~~~~~~~~~ 137 (361) ++|.+...+.++...++ T Consensus 2 ~~p~g~hmy~eL~~~~k 18 (226) T 2czr_A 2 LVPRGSHMYAELSPGTK 18 (226) T ss_dssp TTHHHHHHHHTSCHHHH T ss_pred CCCCCCHHHHHHCHHHH T ss_conf 87762056776486688 No 4 >3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} Probab=5.48 E-value=1.1e+02 Score=8.72 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=20.7 Q ss_pred CCCCEEEEEECCCCC-EEEEEEEEEEEECCCCEEEEECCE Q ss_conf 011013553035785-157875002572289569987787 Q gi|255764468|r 169 TLQGIFIVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGE 207 (361) Q Consensus 169 ~l~~v~i~~~~~~~~-~~~i~A~~~~~~~~~~~~~l~~g~ 207 (361) .+.+..+....+.+. .-.+.|++|.+..+ ..+.|.+.. T Consensus 61 ~l~~P~~~~~~~~~~~~w~itA~~g~~~~~-~~l~L~gnV 99 (175) T 3my2_A 61 WFTQPVLTTFDKDKIPTWSVKADKAKLTND-RMLYLYGHV 99 (175) T ss_dssp EEESCEEEEECTTCCEEEEEECSEEEECTT-SEEEEEEEE T ss_pred EEECCEEEEECCCCCCEEEEEECEEEECCC-CEEEEECEE T ss_conf 882559999748998229999385898799-689996409 No 5 >1eue_A Cytochrome B5; heme, electron transport; HET: HEM; 1.80A {Rattus norvegicus} SCOP: d.120.1.1 PDB: 1awp_A* 1icc_A* 1b5m_A* 1lj0_A* 2i89_A* Probab=5.34 E-value=1.1e+02 Score=8.65 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=15.1 Q ss_pred EEEEEEECCCCEEEEECCEEEEEC Q ss_conf 500257228956998778788851 Q gi|255764468|r 189 AQSGSIDLDRQAIILNDGEVHRKS 212 (361) Q Consensus 189 A~~~~~~~~~~~~~l~~g~~~~~~ 212 (361) .+-++-+..+..|+..+|.+++.. T Consensus 10 ~ev~~H~~~~d~Wvii~g~VYDvT 33 (86) T 1eue_A 10 EEVAKRNTAEETWMVIHGRVYDIT 33 (86) T ss_dssp HHHTTCEETTEEEEEETTEEEECG T ss_pred HHHHHHCCCCCEEEEECCEEECCE T ss_conf 999975898887999999995366 No 6 >2jq5_A SEC-C motif; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} Probab=5.26 E-value=1.1e+02 Score=8.59 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=17.5 Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCCEEEEECCEE Q ss_conf 35530357851578750025722895699877878 Q gi|255764468|r 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208 (361) Q Consensus 174 ~i~~~~~~~~~~~i~A~~~~~~~~~~~~~l~~g~~ 208 (361) |+...++++.......++.++...+..|...||++ T Consensus 92 F~A~y~~~~~~~~~~~ErS~F~r~~g~W~Y~dG~~ 126 (128) T 2jq5_A 92 FIARFRRGGGPEQSHHERSQFRKARGRWYFSEGEA 126 (128) T ss_dssp EEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEES T ss_pred EEEEEEECCCCEEEEEEEEEEEEECCEEEEECCEE T ss_conf 99999969982888998311699899999979898 No 7 >2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Probab=4.30 E-value=1.5e+02 Score=7.99 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999972134 Q gi|255764468|r 318 VFWGFSYIIHKIEQN 332 (361) Q Consensus 318 ~~~~~~~~~~~~~~~ 332 (361) ++.-.+++.+..|.| T Consensus 312 IFlPlTfIaGiyGMN 326 (363) T 2iub_A 312 IFMPLTFIAGIYGMN 326 (363) T ss_dssp HHHHHHHHTTSCC-- T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998165564 No 8 >2z3x_A SAsp, small, acid-soluble spore protein C; alpha/beta-type SAsp, bacillus subtils spore; 2.10A {Bacillus subtilis} Probab=4.20 E-value=1.5e+02 Score=7.91 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 1278877654445565420 Q gi|255764468|r 121 IEPKCRSTIKQLSAKAQLA 139 (361) Q Consensus 121 i~P~~~~~~~~~~~~~~~~ 139 (361) ++|.+....+++..++.++ T Consensus 4 lVP~A~~aLdq~K~EiA~E 22 (63) T 2z3x_A 4 LIPQAASAIEQMKLEIASE 22 (63) T ss_dssp SSGGGHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 6577999999999999999 No 9 >2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, coiled coil, metal-binding, phosphoprotein; NMR {Homo sapiens} Probab=4.15 E-value=85 Score=9.32 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=0.0 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEECCEEEEECC Q ss_conf 34442100011013553035785157875002572289569987787888517 Q gi|255764468|r 161 ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP 213 (361) Q Consensus 161 i~~~~~~~~l~~v~i~~~~~~~~~~~i~A~~~~~~~~~~~~~l~~g~~~~~~~ 213 (361) .........-++..-+.-++++.+.+..++-++-+.++.-|+..+|.+|+... T Consensus 1 ~~~~~~~~~~~~n~~~~~n~~~l~~it~~ev~~Hn~~~d~Wvvi~g~VYDVT~ 53 (112) T 2keo_A 1 MHHHHHHSSGRENLYFQGNNEKVTLVRIADLENHNNDGGFWTVIDGKVYDIKD 53 (112) T ss_dssp --------------------CCCCEECHHHHHHHHHHTCCEEEETTEEEEHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCEEECHHH T ss_conf 97544466765565467788657650799999748989879999999954078 No 10 >2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Probab=4.13 E-value=1.5e+02 Score=7.88 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHH Q ss_conf 56889998735453221242100004665553101210127 Q gi|255764468|r 83 NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123 (361) Q Consensus 83 ~~El~al~a~GiS~~~i~~p~l~~~~~i~~~~~~l~~~i~P 123 (361) |.|+.-+.+-|.|.-.+.+.+.+.-==+-...-++-+++.| T Consensus 10 ~~eI~~Lm~~GYs~~~v~~AL~Ia~NniemA~~ILrEF~~~ 50 (53) T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSGP 50 (53) T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTSC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC T ss_conf 18999999855449999999999861199999999997354 Done!