Query gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 361 No_of_seqs 128 out of 2077 Neff 9.8 Searched_HMMs 13730 Date Wed Jun 1 04:53:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764468.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1koha2 d.58.7.2 (A:105-200) m 11.0 15 0.0011 12.3 -1.2 54 120-173 18-71 (96) 2 d1kbia2 d.120.1.1 (A:1-97) Fla 4.3 86 0.0063 7.9 0.9 25 189-213 14-38 (97) 3 d1kqfb2 f.23.22.1 (B:246-290) 4.2 88 0.0064 7.9 2.9 26 269-294 4-29 (45) 4 d1utca2 b.69.6.1 (A:4-330) Cla 4.0 92 0.0067 7.8 4.2 71 152-224 28-100 (327) 5 d1xrsb2 d.230.4.1 (B:33-84) D- 3.7 91 0.0066 7.8 -0.3 45 113-161 4-48 (52) 6 d1oedb_ f.36.1.1 (B:) Acetylch 3.5 1.1E+02 0.008 7.4 4.1 84 7-90 4-87 (250) 7 d1euea_ d.120.1.1 (A:) Cytochr 3.5 1.1E+02 0.0081 7.3 1.4 34 180-213 1-34 (86) 8 d2cchb1 a.74.1.1 (B:181-308) C 3.4 1.1E+02 0.0084 7.2 4.1 52 1-52 56-114 (128) 9 d1v54g_ f.23.2.1 (G:) Mitochon 3.3 1.2E+02 0.0084 7.2 3.1 21 270-290 13-33 (84) 10 d2uuia1 f.56.1.1 (A:2-147) Leu 3.0 1.3E+02 0.0097 6.9 2.5 99 34-132 43-145 (146) No 1 >d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Probab=10.98 E-value=15 Score=12.26 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=27.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCE Q ss_conf 012788776544455654200011222012101220343453444210001101 Q gi|255764468|r 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173 (361) Q Consensus 120 ~i~P~~~~~~~~~~~~~~~~~~~~~~~~g~f~~~~~~~~i~i~~~~~~~~l~~v 173 (361) +..|++.+.-+++.-+.-+.....-..|-.|....++..+|++...-...++++ T Consensus 18 VtIp~G~kYdK~wLl~~iq~~~pv~F~Pv~fh~~~~~a~FfV~D~~~A~aL~~~ 71 (96) T d1koha2 18 ITIPYGRKYDKAWLLSMIQSKSSVPFTPIEFHYENTRAQFFVEDASTASALKAV 71 (96) T ss_dssp CCBTTCTTSCHHHHHHHHHHTCSSCCCCBSCCEETTEECCEECCHHHHHTTGGG T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHC T ss_conf 992176514889999999761897846578898188889984888999999877 No 2 >d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.25 E-value=86 Score=7.95 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=15.5 Q ss_pred EEEEEEECCCCEEEEECCEEEEECC Q ss_conf 5002572289569987787888517 Q gi|255764468|r 189 AQSGSIDLDRQAIILNDGEVHRKSP 213 (361) Q Consensus 189 A~~~~~~~~~~~~~l~~g~~~~~~~ 213 (361) ++-++-+..+.-|+..+|.+|+..+ T Consensus 14 ~EV~~H~~~~d~Wvvi~g~VYDvT~ 38 (97) T d1kbia2 14 AEVAKHNKPDDCWVVINGYVYDLTR 38 (97) T ss_dssp THHHHCEETTEEEEEETTEEEECTT T ss_pred HHHHHHCCCCCEEEEECCEEEECCH T ss_conf 9999748987879999999985310 No 3 >d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]} Probab=4.17 E-value=88 Score=7.89 Aligned_cols=26 Identities=12% Similarity=-0.236 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999862 Q gi|255764468|r 269 RSEFHKRLTQWLFPVIFGLISIVAAD 294 (361) Q Consensus 269 ~~el~~rls~pl~~l~~~lla~~~~~ 294 (361) .+++|+-+..|+....|...++...+ T Consensus 4 ~V~lWKgv~Kpl~~~~~~~~~~~~~f 29 (45) T d1kqfb2 4 SVSLWKGALKPLAAAGFIATFAGLIF 29 (45) T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56776101789999999999999887 No 4 >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=4.04 E-value=92 Score=7.80 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE--EEEEEEEECCCCEEEEECCEEEEECCCCCCEEEEEEC Q ss_conf 122034345344421000110135530357851578--7500257228956998778788851788621244301 Q gi|255764468|r 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224 (361) Q Consensus 152 ~~~~~~~i~i~~~~~~~~l~~v~i~~~~~~~~~~~i--~A~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~F~ 224 (361) ..+.+.++-+++..+++ ..|.|.|..+++...+. .||+|-..+.+..+-|+.|..-+.-+-+.......+. T Consensus 28 T~ESDkyicVRe~~~~~--~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~ 100 (327) T d1utca2 28 TMESDKFICIREKVGEQ--AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT 100 (327) T ss_dssp ECSSSSEEEEEEEETTE--EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE T ss_pred EEECCCEEEEEECCCCC--CEEEEEECCCCCCCEECCCCHHHHHCCCCCCEEEEECCCEEEEEEHHHHHHHCEEE T ss_conf 78558779998325898--43999988998763314436166530888757999628868998446822111587 No 5 >d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]} Probab=3.67 E-value=91 Score=7.83 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=0.0 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHH Q ss_conf 5310121012788776544455654200011222012101220343453 Q gi|255764468|r 113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI 161 (361) Q Consensus 113 ~~~~l~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~g~f~~~~~~~~i~i 161 (361) ++|.+--...+.+...++++..++..+.+... .....++|.++|+ T Consensus 4 lSFTLPVp~g~~A~eAAk~la~kMGl~~p~Vv----~~~~l~~gfTFFv 48 (52) T d1xrsb2 4 LSFTLPLKNNERSAEAAKQIALKMGLEEPSVV----MQQSLDEEFTFFV 48 (52) T ss_dssp EEEEESSCSSHHHHHHHHHHHHTTSSCCCEEE----EEEEEETTEEEEE T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCHHEE----EHHHHCCCCEEEE T ss_conf 89984079984789999999998289960230----4365389927999 No 6 >d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Probab=3.50 E-value=1.1e+02 Score=7.37 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999850799989999999997479999999999999999999998655688 Q gi|255764468|r 7 YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86 (361) Q Consensus 7 Yi~k~~l~~f~~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~lP~~l~~~lP~a~li~~l~~~~~L~~~~El 86 (361) |+..-+++..+++.+..++..+=.|--+.+..-...=.++..++..+.-.+|..-..+--++.+++..+.+.-++---.. T Consensus 4 y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~~~~ 83 (250) T d1oedb_ 4 YIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSV 83 (250) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98729999999999999870506888775786277999999999999976898767432899999999899999999887 Q ss_pred HHHH Q ss_conf 9998 Q gi|255764468|r 87 LIID 90 (361) Q Consensus 87 ~al~ 90 (361) +++. T Consensus 84 ~v~~ 87 (250) T d1oedb_ 84 VVLN 87 (250) T ss_dssp HHHH T ss_pred HHEE T ss_conf 5201 No 7 >d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=3.46 E-value=1.1e+02 Score=7.33 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=0.0 Q ss_pred CCCCEEEEEEEEEEEECCCCEEEEECCEEEEECC Q ss_conf 5785157875002572289569987787888517 Q gi|255764468|r 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP 213 (361) Q Consensus 180 ~~~~~~~i~A~~~~~~~~~~~~~l~~g~~~~~~~ 213 (361) ++..+.....+-++-+..+..|+..+|.+|+..+ T Consensus 1 ep~~~~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~ 34 (86) T d1euea_ 1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITR 34 (86) T ss_dssp CCSCCEECHHHHTTCEETTEEEEEETTEEEECGG T ss_pred CCCCCEECHHHHHHHCCCCCEEEEECCEEEECCE T ss_conf 9987778899999648988779999999973521 No 8 >d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Probab=3.36 E-value=1.1e+02 Score=7.25 Aligned_cols=52 Identities=4% Similarity=0.029 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCCHHHHHHH Q ss_conf 93568999999999999999999999999999-------99999985079998999999 Q gi|255764468|r 1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQI-------LQRINLVSSSTESLNILLKI 52 (361) Q Consensus 1 M~il~rYi~k~~l~~f~~~~~~l~~i~~~~~~-------~~~l~~~~~~~~~~~~~l~~ 52 (361) +.++|||+.+.-...--.-+++.+++++-..+ ++.+-...++..+..++.+. T Consensus 56 v~llDr~l~~~~i~~~~~qLi~~~cl~iAsK~ee~~~~~l~~l~~~~~~~~t~~~i~~m 114 (128) T d2cchb1 56 VNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 114 (128) T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 99999986016776478899999999999988722478799999998499899999999 No 9 >d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]} Probab=3.35 E-value=1.2e+02 Score=7.24 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999 Q gi|255764468|r 270 SEFHKRLTQWLFPVIFGLISI 290 (361) Q Consensus 270 ~el~~rls~pl~~l~~~lla~ 290 (361) +++|++++.-....++++.++ T Consensus 13 ~~lWkkis~~va~P~i~l~~~ 33 (84) T d1v54g_ 13 ARTWRFLTFGLALPSVALCTL 33 (84) T ss_dssp HHHHHHHHHHTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 899998898999999999999 No 10 >d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]} Probab=2.98 E-value=1.3e+02 Score=6.89 Aligned_cols=99 Identities=4% Similarity=-0.104 Sum_probs=0.0 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCHH Q ss_conf 9999985079998999999999747999999999-99999999999986556889---9987354532212421000046 Q gi|255764468|r 34 QRINLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELL---IIDNTGTSRITLIKPVLFLAIL 109 (361) Q Consensus 34 ~~l~~~~~~~~~~~~~l~~~~l~lP~~l~~~lP~-a~li~~l~~~~~L~~~~El~---al~a~GiS~~~i~~p~l~~~~~ 109 (361) ++++.....+.+..+.+-..+..+--.-...-|. +.++|.++++||..--.-.. .=|..|.-...+....+..+.+ T Consensus 43 ~~fera~RaH~N~~E~~P~fL~ll~l~~l~~~~~~a~~lG~~~~vgRi~ha~gy~~~~~kr~~g~~~~~~~~~~ll~~a~ 122 (146) T d2uuia1 43 PEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVALAA 122 (146) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999974537049999999999996168899999999999999999986431756477674699999999999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 65553101210127887765444 Q gi|255764468|r 110 LSIFLFISENIIEPKCRSTIKQL 132 (361) Q Consensus 110 i~~~~~~l~~~i~P~~~~~~~~~ 132 (361) ++++..++-.++.-.-..+.+.. T Consensus 123 ~gi~~~~l~~~~~~~~~~~~~~~ 145 (146) T d2uuia1 123 LGLLAHFLPAALRAALLGRLRTL 145 (146) T ss_dssp HHHHHHHHHHHHHHHHHHTCCSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999987799888750 Done!