Query         gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 361
No_of_seqs    128 out of 2077
Neff          9.8 
Searched_HMMs 13730
Date          Wed Jun  1 04:53:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764468.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1koha2 d.58.7.2 (A:105-200) m  11.0      15  0.0011   12.3  -1.2   54  120-173    18-71  (96)
  2 d1kbia2 d.120.1.1 (A:1-97) Fla   4.3      86  0.0063    7.9   0.9   25  189-213    14-38  (97)
  3 d1kqfb2 f.23.22.1 (B:246-290)    4.2      88  0.0064    7.9   2.9   26  269-294     4-29  (45)
  4 d1utca2 b.69.6.1 (A:4-330) Cla   4.0      92  0.0067    7.8   4.2   71  152-224    28-100 (327)
  5 d1xrsb2 d.230.4.1 (B:33-84) D-   3.7      91  0.0066    7.8  -0.3   45  113-161     4-48  (52)
  6 d1oedb_ f.36.1.1 (B:) Acetylch   3.5 1.1E+02   0.008    7.4   4.1   84    7-90      4-87  (250)
  7 d1euea_ d.120.1.1 (A:) Cytochr   3.5 1.1E+02  0.0081    7.3   1.4   34  180-213     1-34  (86)
  8 d2cchb1 a.74.1.1 (B:181-308) C   3.4 1.1E+02  0.0084    7.2   4.1   52    1-52     56-114 (128)
  9 d1v54g_ f.23.2.1 (G:) Mitochon   3.3 1.2E+02  0.0084    7.2   3.1   21  270-290    13-33  (84)
 10 d2uuia1 f.56.1.1 (A:2-147) Leu   3.0 1.3E+02  0.0097    6.9   2.5   99   34-132    43-145 (146)

No 1  
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.98  E-value=15  Score=12.26  Aligned_cols=54  Identities=11%  Similarity=-0.001  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             012788776544455654200011222012101220343453444210001101
Q gi|255764468|r  120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI  173 (361)
Q Consensus       120 ~i~P~~~~~~~~~~~~~~~~~~~~~~~~g~f~~~~~~~~i~i~~~~~~~~l~~v  173 (361)
                      +..|++.+.-+++.-+.-+.....-..|-.|....++..+|++...-...++++
T Consensus        18 VtIp~G~kYdK~wLl~~iq~~~pv~F~Pv~fh~~~~~a~FfV~D~~~A~aL~~~   71 (96)
T d1koha2          18 ITIPYGRKYDKAWLLSMIQSKSSVPFTPIEFHYENTRAQFFVEDASTASALKAV   71 (96)
T ss_dssp             CCBTTCTTSCHHHHHHHHHHTCSSCCCCBSCCEETTEECCEECCHHHHHTTGGG
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHC
T ss_conf             992176514889999999761897846578898188889984888999999877


No 2  
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.25  E-value=86  Score=7.95  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             EEEEEEECCCCEEEEECCEEEEECC
Q ss_conf             5002572289569987787888517
Q gi|255764468|r  189 AQSGSIDLDRQAIILNDGEVHRKSP  213 (361)
Q Consensus       189 A~~~~~~~~~~~~~l~~g~~~~~~~  213 (361)
                      ++-++-+..+.-|+..+|.+|+..+
T Consensus        14 ~EV~~H~~~~d~Wvvi~g~VYDvT~   38 (97)
T d1kbia2          14 AEVAKHNKPDDCWVVINGYVYDLTR   38 (97)
T ss_dssp             THHHHCEETTEEEEEETTEEEECTT
T ss_pred             HHHHHHCCCCCEEEEECCEEEECCH
T ss_conf             9999748987879999999985310


No 3  
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.17  E-value=88  Score=7.89  Aligned_cols=26  Identities=12%  Similarity=-0.236  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999862
Q gi|255764468|r  269 RSEFHKRLTQWLFPVIFGLISIVAAD  294 (361)
Q Consensus       269 ~~el~~rls~pl~~l~~~lla~~~~~  294 (361)
                      .+++|+-+..|+....|...++...+
T Consensus         4 ~V~lWKgv~Kpl~~~~~~~~~~~~~f   29 (45)
T d1kqfb2           4 SVSLWKGALKPLAAAGFIATFAGLIF   29 (45)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56776101789999999999999887


No 4  
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.04  E-value=92  Score=7.80  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE--EEEEEEEECCCCEEEEECCEEEEECCCCCCEEEEEEC
Q ss_conf             122034345344421000110135530357851578--7500257228956998778788851788621244301
Q gi|255764468|r  152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK  224 (361)
Q Consensus       152 ~~~~~~~i~i~~~~~~~~l~~v~i~~~~~~~~~~~i--~A~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~F~  224 (361)
                      ..+.+.++-+++..+++  ..|.|.|..+++...+.  .||+|-..+.+..+-|+.|..-+.-+-+.......+.
T Consensus        28 T~ESDkyicVRe~~~~~--~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~  100 (327)
T d1utca2          28 TMESDKFICIREKVGEQ--AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT  100 (327)
T ss_dssp             ECSSSSEEEEEEEETTE--EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE
T ss_pred             EEECCCEEEEEECCCCC--CEEEEEECCCCCCCEECCCCHHHHHCCCCCCEEEEECCCEEEEEEHHHHHHHCEEE
T ss_conf             78558779998325898--43999988998763314436166530888757999628868998446822111587


No 5  
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=3.67  E-value=91  Score=7.83  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHH
Q ss_conf             5310121012788776544455654200011222012101220343453
Q gi|255764468|r  113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI  161 (361)
Q Consensus       113 ~~~~l~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~g~f~~~~~~~~i~i  161 (361)
                      ++|.+--...+.+...++++..++..+.+...    .....++|.++|+
T Consensus         4 lSFTLPVp~g~~A~eAAk~la~kMGl~~p~Vv----~~~~l~~gfTFFv   48 (52)
T d1xrsb2           4 LSFTLPLKNNERSAEAAKQIALKMGLEEPSVV----MQQSLDEEFTFFV   48 (52)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHHTTSSCCCEEE----EEEEEETTEEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCCHHEE----EHHHHCCCCEEEE
T ss_conf             89984079984789999999998289960230----4365389927999


No 6  
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.50  E-value=1.1e+02  Score=7.37  Aligned_cols=84  Identities=15%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999850799989999999997479999999999999999999998655688
Q gi|255764468|r    7 YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL   86 (361)
Q Consensus         7 Yi~k~~l~~f~~~~~~l~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~lP~~l~~~lP~a~li~~l~~~~~L~~~~El   86 (361)
                      |+..-+++..+++.+..++..+=.|--+.+..-...=.++..++..+.-.+|..-..+--++.+++..+.+.-++---..
T Consensus         4 y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~~~~   83 (250)
T d1oedb_           4 YIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSV   83 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98729999999999999870506888775786277999999999999976898767432899999999899999999887


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|255764468|r   87 LIID   90 (361)
Q Consensus        87 ~al~   90 (361)
                      +++.
T Consensus        84 ~v~~   87 (250)
T d1oedb_          84 VVLN   87 (250)
T ss_dssp             HHHH
T ss_pred             HHEE
T ss_conf             5201


No 7  
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.46  E-value=1.1e+02  Score=7.33  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             CCCCEEEEEEEEEEEECCCCEEEEECCEEEEECC
Q ss_conf             5785157875002572289569987787888517
Q gi|255764468|r  180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP  213 (361)
Q Consensus       180 ~~~~~~~i~A~~~~~~~~~~~~~l~~g~~~~~~~  213 (361)
                      ++..+.....+-++-+..+..|+..+|.+|+..+
T Consensus         1 ep~~~~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~   34 (86)
T d1euea_           1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITR   34 (86)
T ss_dssp             CCSCCEECHHHHTTCEETTEEEEEETTEEEECGG
T ss_pred             CCCCCEECHHHHHHHCCCCCEEEEECCEEEECCE
T ss_conf             9987778899999648988779999999973521


No 8  
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.36  E-value=1.1e+02  Score=7.25  Aligned_cols=52  Identities=4%  Similarity=0.029  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCCHHHHHHH
Q ss_conf             93568999999999999999999999999999-------99999985079998999999
Q gi|255764468|r    1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQI-------LQRINLVSSSTESLNILLKI   52 (361)
Q Consensus         1 M~il~rYi~k~~l~~f~~~~~~l~~i~~~~~~-------~~~l~~~~~~~~~~~~~l~~   52 (361)
                      +.++|||+.+.-...--.-+++.+++++-..+       ++.+-...++..+..++.+.
T Consensus        56 v~llDr~l~~~~i~~~~~qLi~~~cl~iAsK~ee~~~~~l~~l~~~~~~~~t~~~i~~m  114 (128)
T d2cchb1          56 VNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM  114 (128)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             99999986016776478899999999999988722478799999998499899999999


No 9  
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.35  E-value=1.2e+02  Score=7.24  Aligned_cols=21  Identities=19%  Similarity=0.026  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|255764468|r  270 SEFHKRLTQWLFPVIFGLISI  290 (361)
Q Consensus       270 ~el~~rls~pl~~l~~~lla~  290 (361)
                      +++|++++.-....++++.++
T Consensus        13 ~~lWkkis~~va~P~i~l~~~   33 (84)
T d1v54g_          13 ARTWRFLTFGLALPSVALCTL   33 (84)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             899998898999999999999


No 10 
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.98  E-value=1.3e+02  Score=6.89  Aligned_cols=99  Identities=4%  Similarity=-0.104  Sum_probs=0.0

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             9999985079998999999999747999999999-99999999999986556889---9987354532212421000046
Q gi|255764468|r   34 QRINLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELL---IIDNTGTSRITLIKPVLFLAIL  109 (361)
Q Consensus        34 ~~l~~~~~~~~~~~~~l~~~~l~lP~~l~~~lP~-a~li~~l~~~~~L~~~~El~---al~a~GiS~~~i~~p~l~~~~~  109 (361)
                      ++++.....+.+..+.+-..+..+--.-...-|. +.++|.++++||..--.-..   .=|..|.-...+....+..+.+
T Consensus        43 ~~fera~RaH~N~~E~~P~fL~ll~l~~l~~~~~~a~~lG~~~~vgRi~ha~gy~~~~~kr~~g~~~~~~~~~~ll~~a~  122 (146)
T d2uuia1          43 PEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVALAA  122 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999974537049999999999996168899999999999999999986431756477674699999999999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             65553101210127887765444
Q gi|255764468|r  110 LSIFLFISENIIEPKCRSTIKQL  132 (361)
Q Consensus       110 i~~~~~~l~~~i~P~~~~~~~~~  132 (361)
                      ++++..++-.++.-.-..+.+..
T Consensus       123 ~gi~~~~l~~~~~~~~~~~~~~~  145 (146)
T d2uuia1         123 LGLLAHFLPAALRAALLGRLRTL  145 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999987799888750


Done!