RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
         (361 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 61/333 (18%), Positives = 91/333 (27%), Gaps = 140/333 (42%)

Query: 40  SSSTESLNIL----LKISGYLIPTVLPMVTPFCFAMETTNV-LTSMNRNTELLIIDNTGT 94
           + ST  L  L    L+    L+PT       F  A +        +   TE    D+  T
Sbjct: 3   AYSTRPL-TLSHGSLEHV-LLVPTAS-----FFIASQLQEQFNKILPEPTEGFAADDEPT 55

Query: 95  SRITLIKPVLFLAILLSIFL-FISENIIEPKCRSTIKQLSAKAQLALT-F--SYLEEN-- 148
           +      P      L+  FL ++S  +   K     + L     L LT F   YLE N  
Sbjct: 56  T------PAE----LVGKFLGYVSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGNDI 101

Query: 149 --LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG 206
             L  +L  +    + K       + +           K Y            A I+   
Sbjct: 102 HALAAKLLQENDTTLVK------TKELI----------KNYIT----------ARIM--- 132

Query: 207 EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
               K P  K  +     S   +     ++ +V     Q          N  +Y  EL +
Sbjct: 133 ---AKRPFDKKSN-----SALFRAVGEGNAQLVAIFGGQG---------NTDDYFEELRD 175

Query: 267 ---TYRS---------------------EFHKRLTQ------WL---------------- 280
              TY                       +  K  TQ      WL                
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235

Query: 281 --FPVIFGLISI----VAADKRALVRQRKKIHP 307
              P+I G+I +    V A  + L        P
Sbjct: 236 ISCPLI-GVIQLAHYVVTA--KLL-----GFTP 260



 Score = 32.6 bits (74), Expect = 0.13
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 41/101 (40%)

Query: 31  QILQRINL--VSSSTESLNI----------LLKISGYLIPTVLPMVT--PFCFAMETTN- 75
            I + +    VS + + + I          L  +SG +   ++  +   P      TT  
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQF 496

Query: 76  -----------------VLTSMNRNTELLIIDNTGTSRITL 99
                            VLT  N+       D TG  R+ +
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNK-------DGTGV-RVIV 529


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 16/40 (40%)

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKIS 162
           +  +K+L A  +L     Y         DD    L IK +
Sbjct: 19  KQALKKLQASLKL-----Y--------ADDSAPALAIKAT 45


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 28.5 bits (63), Expect = 2.1
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  IG   L+  +F + I WV    +   +V    + L   L I+   +P  LP V   
Sbjct: 289 VLNGIGTILLILVIFTLLIVWVSSFYRSNPIV----QILEFTLAITIIGVPVGLPAVVTT 344

Query: 68  CFAM 71
             A+
Sbjct: 345 TMAV 348


>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane
           protein, P-type ATPase, HAD fold, hydrolase; HET: ADP
           TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1
           c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A*
           1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A*
           2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A*
           3fgo_A* 3fpb_A* 3fps_A* ...
          Length = 994

 Score = 28.0 bits (61), Expect = 4.0
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  F   + + I  S +   ++++ I      +   + +  +     I + ++   IP  
Sbjct: 253 LDEFGEQLSKVI--SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEG 310

Query: 61  LPMVTPFCFAM 71
           LP V   C A+
Sbjct: 311 LPAVITTCLAL 321


>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
           ATP-binding, isopeptide BO ligase, nucleotide-binding,
           UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
           3k9p_A 1yla_A 2o25_A
          Length = 201

 Score = 27.2 bits (60), Expect = 6.8
 Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 4/36 (11%)

Query: 247 LSFLLNPNPNNPNYRPELLETY---RSEFHKRLTQW 279
            + L    P++P     +   Y      F +    W
Sbjct: 115 QALLAAAEPDDP-QDAVVANQYKQNPEMFKQTARLW 149


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.327    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,939,024
Number of extensions: 131825
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 24
Length of query: 361
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 267
Effective length of database: 3,414,294
Effective search space: 911616498
Effective search space used: 911616498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.3 bits)