RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] (361 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.0 bits (101), Expect = 9e-05 Identities = 61/333 (18%), Positives = 91/333 (27%), Gaps = 140/333 (42%) Query: 40 SSSTESLNIL----LKISGYLIPTVLPMVTPFCFAMETTNV-LTSMNRNTELLIIDNTGT 94 + ST L L L+ L+PT F A + + TE D+ T Sbjct: 3 AYSTRPL-TLSHGSLEHV-LLVPTAS-----FFIASQLQEQFNKILPEPTEGFAADDEPT 55 Query: 95 SRITLIKPVLFLAILLSIFL-FISENIIEPKCRSTIKQLSAKAQLALT-F--SYLEEN-- 148 + P L+ FL ++S + K + L L LT F YLE N Sbjct: 56 T------PAE----LVGKFLGYVSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGNDI 101 Query: 149 --LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG 206 L +L + + K + + K Y A I+ Sbjct: 102 HALAAKLLQENDTTLVK------TKELI----------KNYIT----------ARIM--- 132 Query: 207 EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266 K P K + S + ++ +V Q N +Y EL + Sbjct: 133 ---AKRPFDKKSN-----SALFRAVGEGNAQLVAIFGGQG---------NTDDYFEELRD 175 Query: 267 ---TYRS---------------------EFHKRLTQ------WL---------------- 280 TY + K TQ WL Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235 Query: 281 --FPVIFGLISI----VAADKRALVRQRKKIHP 307 P+I G+I + V A + L P Sbjct: 236 ISCPLI-GVIQLAHYVVTA--KLL-----GFTP 260 Score = 32.6 bits (74), Expect = 0.13 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 41/101 (40%) Query: 31 QILQRINL--VSSSTESLNI----------LLKISGYLIPTVLPMVT--PFCFAMETTN- 75 I + + VS + + + I L +SG + ++ + P TT Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQF 496 Query: 76 -----------------VLTSMNRNTELLIIDNTGTSRITL 99 VLT N+ D TG R+ + Sbjct: 497 KATHILDFGPGGASGLGVLTHRNK-------DGTGV-RVIV 529 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.6 bits (65), Expect = 1.2 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 16/40 (40%) Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKIS 162 + +K+L A +L Y DD L IK + Sbjct: 19 KQALKKLQASLKL-----Y--------ADDSAPALAIKAT 45 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Score = 28.5 bits (63), Expect = 2.1 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 8 ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67 +L IG L+ +F + I WV + +V + L L I+ +P LP V Sbjct: 289 VLNGIGTILLILVIFTLLIVWVSSFYRSNPIV----QILEFTLAITIIGVPVGLPAVVTT 344 Query: 68 CFAM 71 A+ Sbjct: 345 TMAV 348 >1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1 c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A* 1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A* 2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A* 3fgo_A* 3fpb_A* 3fps_A* ... Length = 994 Score = 28.0 bits (61), Expect = 4.0 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60 + F + + I S + ++++ I + + + + I + ++ IP Sbjct: 253 LDEFGEQLSKVI--SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEG 310 Query: 61 LPMVTPFCFAM 71 LP V C A+ Sbjct: 311 LPAVITTCLAL 321 >3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201 Score = 27.2 bits (60), Expect = 6.8 Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 4/36 (11%) Query: 247 LSFLLNPNPNNPNYRPELLETY---RSEFHKRLTQW 279 + L P++P + Y F + W Sbjct: 115 QALLAAAEPDDP-QDAVVANQYKQNPEMFKQTARLW 149 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.327 0.141 0.408 Gapped Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,939,024 Number of extensions: 131825 Number of successful extensions: 442 Number of sequences better than 10.0: 1 Number of HSP's gapped: 439 Number of HSP's successfully gapped: 24 Length of query: 361 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 267 Effective length of database: 3,414,294 Effective search space: 911616498 Effective search space used: 911616498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 57 (26.3 bits)