RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
         (361 letters)



>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
           aerophilum [TaxId: 13773]}
          Length = 276

 Score = 25.9 bits (55), Expect = 5.2
 Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 248 SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           + +++ +  +P+Y P+ L  +R +  ++L   L   +
Sbjct: 1   AIVVDDSVFSPSYVPKRLP-HREQQLQQLDILLGNWL 36


>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 465

 Score = 25.4 bits (54), Expect = 8.2
 Identities = 8/61 (13%), Positives = 15/61 (24%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
              +   E L      F  R    +   IF    ++ A+       R+          + 
Sbjct: 52  CGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMG 111

Query: 316 F 316
            
Sbjct: 112 K 112


>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
           yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
          Length = 152

 Score = 25.1 bits (54), Expect = 8.7
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 247 LSFLLNPNPNNPNYRPELLETY---RSEFHKRLTQW 279
            + L +PNPN+P    ++ E +         +  +W
Sbjct: 109 QALLASPNPNDP-LANDVAEDWIKNEQGAKAKAREW 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,280,704
Number of extensions: 58478
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 19
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.7 bits)