BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] (361 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/361 (100%), Positives = 361/361 (100%) Query: 1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV Sbjct: 1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60 Query: 61 LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120 LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI Sbjct: 61 LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120 Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD Sbjct: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180 Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL Sbjct: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240 Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR Sbjct: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300 Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK Sbjct: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360 Query: 361 I 361 I Sbjct: 361 I 361 >gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 16 FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75 FL+ + +VF+ + +I ++ + + + S +L + +P ++ + PF + Sbjct: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIV 77 Query: 76 VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113 V ++NR +EL+I G S L+ P + +ILL IF Sbjct: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115 >gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter asiaticus str. psy62] Length = 1398 Score = 26.9 bits (58), Expect = 0.52, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 73 TTNVLTSMNRNTELLIIDNTGTSRIT 98 +TN L SM RNT L I+D +G + + Sbjct: 965 STNDLISMGRNTTLQILDMSGQEQYS 990 >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Query: 181 TQTHKIYYAQSGSID-----LDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQ 229 T+T Y + S D L +++I I DGEV R S I K+I + K Y Q Sbjct: 398 TETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453 >gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFR 152 R T+ ++ + LA YLE+N+ F+ Sbjct: 307 RETLHKIDHRIHLARKKKYLEKNIIFQ 333 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.141 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 225,737 Number of Sequences: 1233 Number of extensions: 9061 Number of successful extensions: 44 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 8 length of query: 361 length of database: 328,796 effective HSP length: 75 effective length of query: 286 effective length of database: 236,321 effective search space: 67587806 effective search space used: 67587806 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 39 (19.6 bits)