RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
         (361 letters)



>1z57_A Dual specificity protein kinase CLK1; protein tyrosine
           kinase, splicing, human, 10Z-hymendialdisine, structural
           genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
           (A:99-339)
          Length = 241

 Score = 29.5 bits (64), Expect = 0.76
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
           IK +GF  F      +  Y+I K ++F + + + H
Sbjct: 9   IKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTH 43


>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor
           complex, ATP-binding, cytoplasm, nucleotide-binding,
           nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A
           {Homo sapiens} PDB: 2oza_A 3fyk_X* 3fyj_X* 2p3g_X*
           3ka0_A* 3fpm_A* 2pzy_A* 3kc3_A* 2jbo_A* 2jbp_A*
           (A:108-336)
          Length = 229

 Score = 28.6 bits (62), Expect = 1.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
           I+  G Q F+E+ A+    +I   + F +  NI H  
Sbjct: 10  IQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRD 46


>2onk_C Molybdate/tungstate ABC transporter, permease protein;
           membrane protein; 3.10A {Archaeoglobus fulgidus}
           (C:1-68,C:250-284)
          Length = 103

 Score = 28.0 bits (62), Expect = 1.7
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
           H++ +    YF   + L+  A+  + +S+ L F       +++         L+     +
Sbjct: 10  HHHSSGENLYFQGHMRLLFSALLALLSSIILLF-------VLLPVAATVTLQLFNFDEFL 62

Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
           K+       +PVAA LI + L + +++ I++ +ED
Sbjct: 63  KAASDPSAAMPVAAILILLSLAVFVALRIIVGRED 97


>1ua2_A CAK, cell division protein kinase 7, TFIIH basal; cell
           cycle, phosphorylation, protein-protein interaction,
           cell cycle, transferase; HET: TPO ATP; 3.02A {Homo
           sapiens} (A:94-346)
          Length = 253

 Score = 27.6 bits (59), Expect = 2.3
 Identities = 2/29 (6%), Positives = 9/29 (31%)

Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
              +           ++ + + ++  I H
Sbjct: 14  LVLTPSHIKAYMLMTLQGLEYLHQHWILH 42


>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
           staurosporine, transferase; HET: STU; 2.70A {Homo
           sapiens} (A:142-400)
          Length = 259

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
           I+  G Q F+E+ AS     I + + + +  NI H
Sbjct: 9   IQDRGDQAFTEREASEIXKSIGEAIQYLHSINIAH 43


>3bqc_A Casein kinase II subunit alpha; protein kinase CK2,
           eukaryotic protein kinases, emodin, ATP-competitive
           inhibitor, ATP-binding, nucleotide-binding; HET: EMO;
           1.50A {Homo sapiens} (A:123-335)
          Length = 213

 Score = 27.6 bits (59), Expect = 2.6
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
           +Q  ++       YEI+K + + +   I H
Sbjct: 3   YQTLTDYDIRFYMYEILKALDYCHSMGIMH 32


>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell
           cycle, phosphorylation, ATP- binding, cell division,
           disease mutation, kinase, nucleotide-binding; 3.00A
           {Homo sapiens} (A:102-308)
          Length = 207

 Score = 27.0 bits (58), Expect = 4.2
 Identities = 3/35 (8%), Positives = 11/35 (31%)

Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
           +          +       + ++ + F + + I H
Sbjct: 8   LDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVH 42


>2r3i_A Cell division protein kinase 2; serine/threonine-protein
           kinase, cell cycle, inhibition, cyclin-dependent kinase,
           cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB:
           2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A*
           2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A
           1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
           (A:83-298)
          Length = 216

 Score = 26.8 bits (57), Expect = 4.7
 Identities = 2/36 (5%), Positives = 12/36 (33%)

Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
           +                 +++++ ++F +   + H 
Sbjct: 9   MDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHR 44


>3gl3_A Putative thiol:disulfide interchange protein DSBE;
           oxidoreductase, PSI-II, structural genomics, protein
           structure initiative; 2.09A {Chlorobium tepidum tls}
           (A:)
          Length = 152

 Score = 26.0 bits (56), Expect = 8.6
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTSITIDKKNKIIHR 193
            Q    N D +  D   ++     +  +    K   P    +    TS  ID+  K++ +
Sbjct: 62  FQVVAVNLDAKTGDAXKFLAQVPAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQ 121

Query: 194 KDADLAIIYNDKVK-LKKVVE 213
                        + +   + 
Sbjct: 122 HVGFRPADKEALEQQILAALG 142


>2eu9_A Dual specificity protein kinase CLK3; kinase domain,
           transferase; 1.53A {Homo sapiens} PDB: 2exe_A
           (A:104-238,A:299-355)
          Length = 192

 Score = 25.9 bits (56), Expect = 9.6
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
           +K + FQ +         Y++   + F +++ + H
Sbjct: 9   LKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTH 43


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,673,280
Number of extensions: 119898
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 26
Length of query: 361
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 271
Effective length of database: 1,913,599
Effective search space: 518585329
Effective search space used: 518585329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)