BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
         (361 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 361

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
           MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP
Sbjct: 1   MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60

Query: 61  LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
           LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI
Sbjct: 61  LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120

Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
           NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT
Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180

Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
           SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF
Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240

Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
           SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR
Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300

Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
           SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED
Sbjct: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360

Query: 361 G 361
           G
Sbjct: 361 G 361


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score = 34.3 bits (77), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 20  FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIV 77
           FL+  + +VF+  + +I  ++  + + + S   +L  +   +P ++  + PF   +    
Sbjct: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75

Query: 78  VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
           V  ++NR +EL+I    G S   L+ P +  +ILL IF
Sbjct: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 33.1 bits (74), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 21/88 (23%)

Query: 136 QQWKDNGDKQKSDIIPWMQISNPQ---QDIFIGA-----KKILPENH-----IWEDFTSI 182
           ++W+D       +   WMQ ++P+   +D+FIG      KK   + H     +W +    
Sbjct: 473 EEWED-----AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527

Query: 183 ---TIDKKNKIIHRKDADLAIIYNDKVK 207
              TI+    II RK  D+ ++Y  K K
Sbjct: 528 FEQTIENGKAIIARKRRDVPLVYMKKDK 555


>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 25.8 bits (55), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291
           Q F E   S +F  II  +   ++  +F+ YR      A+  +       L   + T   
Sbjct: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178

Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
                EF +     + V Y +F G   YT    + S G++  ++ +A     ++   SL 
Sbjct: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234

Query: 352 I 352
           +
Sbjct: 235 L 235


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 25.8 bits (55), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291
           Q F E   S +F  II  +   ++  +F+ YR      A+  +       L   + T   
Sbjct: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178

Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
                EF +     + V Y +F G   YT    + S G++  ++ +A     ++   SL 
Sbjct: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234

Query: 352 I 352
           +
Sbjct: 235 L 235


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
           MSF N  N F+N +        I++P++ + M L+
Sbjct: 1   MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLV 35


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 24.3 bits (51), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 319 YTIITIMKSFGKSGILLPVA 338
           Y I+ ++ SFG++GI + V+
Sbjct: 277 YKIVRVLNSFGEAGIAIDVS 296


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.142    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,821
Number of Sequences: 1233
Number of extensions: 10059
Number of successful extensions: 47
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 16
length of query: 361
length of database: 328,796
effective HSP length: 75
effective length of query: 286
effective length of database: 236,321
effective search space: 67587806
effective search space used: 67587806
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)