BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] (361 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/361 (100%), Positives = 361/361 (100%) Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP Sbjct: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60 Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI Sbjct: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120 Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180 Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240 Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300 Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED Sbjct: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360 Query: 361 G 361 G Sbjct: 361 G 361 >gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIV 77 FL+ + +VF+ + +I ++ + + + S +L + +P ++ + PF + Sbjct: 16 FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75 Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115 V ++NR +EL+I G S L+ P + +ILL IF Sbjct: 76 VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 33.1 bits (74), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 21/88 (23%) Query: 136 QQWKDNGDKQKSDIIPWMQISNPQ---QDIFIGA-----KKILPENH-----IWEDFTSI 182 ++W+D + WMQ ++P+ +D+FIG KK + H +W + Sbjct: 473 EEWED-----AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 Query: 183 ---TIDKKNKIIHRKDADLAIIYNDKVK 207 TI+ II RK D+ ++Y K K Sbjct: 528 FEQTIENGKAIIARKRRDVPLVYMKKDK 555 >gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291 Q F E S +F II + ++ +F+ YR A+ + L + T Sbjct: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351 EF + + V Y +F G YT + S G++ ++ +A ++ SL Sbjct: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 Query: 352 I 352 + Sbjct: 235 L 235 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291 Q F E S +F II + ++ +F+ YR A+ + L + T Sbjct: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351 EF + + V Y +F G YT + S G++ ++ +A ++ SL Sbjct: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 Query: 352 I 352 + Sbjct: 235 L 235 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290 MSF N N F+N + I++P++ + M L+ Sbjct: 1 MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLV 35 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 15/20 (75%) Query: 319 YTIITIMKSFGKSGILLPVA 338 Y I+ ++ SFG++GI + V+ Sbjct: 277 YKIVRVLNSFGEAGIAIDVS 296 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.142 0.411 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 232,821 Number of Sequences: 1233 Number of extensions: 10059 Number of successful extensions: 47 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 16 length of query: 361 length of database: 328,796 effective HSP length: 75 effective length of query: 286 effective length of database: 236,321 effective search space: 67587806 effective search space used: 67587806 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)