HHsearch alignment for GI: 255764470 and conserved domain: COG2524
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription].
Probab=99.02 E-value=3.2e-09 Score=86.37 Aligned_cols=245 Identities=17% Similarity=0.267 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q ss_conf 9899999998485289999999999999999977----45733702788998999999999--------89999987554
Q gi|255764470|r 175 VSQPMIRYISRHTTVVILCLGFLLMIGFLLIIEG----LHFDIPKGYLYASIGFSGIIEFF--------NQVARRNREQL 242 (523)
Q Consensus 175 ~s~~i~~~i~~~p~~~~l~l~fl~~iG~~L~~eg----~~~~ipk~y~y~~~~fs~~ve~~--------n~~~~~~~~~~ 242 (523)
T Consensus 27 KgeeIA~~l~rnpGTVRNqmq~LkaLgL---VegvpGPkGGY~PT~kAYe~L~iqt~~~~~~Vpi~~~G~~v~~~~a~~I 103 (294)
T COG2524 27 KGEEIAEVLNRNPGTVRNQMQSLKALGL---VEGVPGPKGGYKPTSKAYEALSIQTLETEFVVPIYKDGNVVEDVKALKI 103 (294)
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEEEE
T ss_conf 5599999874596169999999885275---2256689889653389998744577775148889876828501378888
Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCCCC---HHHH-HHHHHHHHHCCCCCHHHHHH---HHHHHCCCCEEEEEEEEECC
Q ss_conf 30103777667656744156-88876679---8889-99999677466789899999---99751137866746534000
Q gi|255764470|r 243 MSPSRLRARTADAVLRLLGG-KPIQPQGL---NVKA-DVLLPTQHEKHIISDQEKDM---VQSVLTLADRPAKSIMTPRT 314 (523)
Q Consensus 243 ~~~~~~~eRtA~aVLRLlG~-~~~~~~~~---~ee~-~~li~~~~~~g~l~~~E~~m---i~~vL~L~e~~V~~IMtPR~ 314 (523)
T Consensus 104 e~~~i~~p~~c~a~i~v~Gdi~~~~~gD~VrVGPtP~~klvv~G~V~g-~Dd~~~~ilidi~~m~siPk~~V~~~~s--~ 180 (294)
T COG2524 104 ELTSISNPDACRAVIRVVGDIRKINIGDSVRVGPTPVNKLVVEGKVIG-RDDTANEILIDISKMVSIPKEKVKNLMS--K 180 (294)
T ss_pred EEECCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEC-CCCCCCEEEEEEEEEEECCCCHHHHHCC--C
T ss_conf 972137976541689998013347889867877754424899869962-4566776999874326457302666266--7
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCC-CCHHHHHH-CCCEEECCCCCHHHHHH
Q ss_conf 28996089998999999985799788887678552788888888762020246-60168873-27435238999899999
Q gi|255764470|r 315 EIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEG-SMNFKRSI-RKPLVVHENISVLKLME 392 (523)
Q Consensus 315 ~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~-~~~~~~li-r~~~~Vpe~~~l~~lL~ 392 (523)
T Consensus 181 ~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~~~~kV~~~M~k~vitI~eDe~i~dAir 258 (294)
T COG2524 181 KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIR 258 (294)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCCCCEECCC--CEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCEECCCHHHHHHHH
T ss_conf 84676688639999999997286678510289--4589998899999997689654388875057704757304999999
Q ss_pred HHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCC
Q ss_conf 88503862777522867425652599999987066
Q gi|255764470|r 393 RLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGD 427 (523)
Q Consensus 393 ~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGe 427 (523)
T Consensus 259 ~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 259 LMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCC
T ss_conf 98763864699984699678788557888886436