HHsearch alignment for GI: 255764470 and conserved domain: TIGR03415
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.68 E-value=0.0034 Score=42.38 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=69.4
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCCCHH
Q ss_conf 99999751137866746534000289960899989999999857997888876785527888888887620202466016
Q gi|255764470|r 292 KDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGSMNF 371 (523)
Q Consensus 292 ~~mi~~vL~L~e~~V~~IMtPR~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~~~~ 371 (523)
T Consensus 262 ~~Fvg~~~~~~vl~a~~vm~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 328 (382)
T TIGR03415 262 ADFVAHTNPLNVLTARSLMRPLTDLEHVDGGW--CVSDR-----RDTWLFTIDKQV------RRRDAKLPVQAWAAEQEV 328 (382)
T ss_pred HHHCCCCCCCCEEEHHHHCCCCCCCCCCCCCH--HHHHH-----HCCCCCCCCHHH------HCCCCCCHHHHCCCCCCH
T ss_conf 86229787211256878436741001357403--34433-----200001320221------014431022221344302
Q ss_pred HHHHCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCC
Q ss_conf 88732743523899989999988503862777522867425652599999987066
Q gi|255764470|r 372 KRSIRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGD 427 (523)
Q Consensus 372 ~~lir~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGe 427 (523)
T Consensus 329 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~v~~~g~l~G~i~~~~~l~~l~g~ 382 (382)
T TIGR03415 329 ESLEAAPTVINPDTLMRDVLAARHRTGGAI--LLVENGRIVGVIGDDNIYHALLGH 382 (382)
T ss_pred HHHCCCCCEECCCCCHHHHHHHHHHCCCCE--EEECCCEEEEEEEHHHHHHHHHCC
T ss_conf 231257733389893999999998589980--990599599998689999986279