HHsearch alignment for GI: 255764470 and conserved domain: cd04583
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.54 E-value=0.00062 Score=47.76 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=49.3
Q ss_pred HCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCH
Q ss_conf 32743523899989999988503862777522867425652599999987066445788863128834985998700119
Q gi|255764470|r 375 IRKPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITVGDDGSLTVDGWIDV 454 (523)
Q Consensus 375 ir~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE~d~~~~i~~~~d~~~~v~G~~~l 454 (523)
T Consensus 1 ~r~pitv~~~~tv~eal~~m~~~~~~~l~Vvd~~~~lvGivt~~di~~~~~~~-----~~v~~i--m~~~~~tv~~~~~~ 73 (109)
T cd04583 1 IKNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA-----KSLEDI--MLEDVFTVQPDASL 73 (109)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHCCCCC-----CEEEEC--CEEEEEEECCCCCH
T ss_conf 99899979939799999999973997899995899899999810434300589-----678751--26202897489999
Q ss_pred HHHHHHH
Q ss_conf 9999982
Q gi|255764470|r 455 RYASKLF 461 (523)
Q Consensus 455 ~el~~~l 461 (523)
T Consensus 74 ~~a~~~m 80 (109)
T cd04583 74 RDVLGLV 80 (109)
T ss_pred HHHHHHH
T ss_conf 9999999