HHsearch alignment for GI: 255764470 and conserved domain: cd04593
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.08 E-value=2.5e-09 Score=87.13 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=91.8
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCC---CHHHHHH-CCCEEECCCCCHHHHH
Q ss_conf 89960899989999999857997888876785527888888887620202466---0168873-2743523899989999
Q gi|255764470|r 316 IVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGS---MNFKRSI-RKPLVVHENISVLKLM 391 (523)
Q Consensus 316 i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~---~~~~~li-r~~~~Vpe~~~l~~lL 391 (523)
T Consensus 3 P~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~-g~lvGIvT~~Dl~r~~~~~~~~~~~~v~~vmt~~~~tv~pd~~l~~al 81 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHH
T ss_conf 8388991999999999987499899999499-988999889999999973888667794543038966899999499999
Q ss_pred HHHHHCCCEEEEEECCC--CCEEEEEEHHHHHHH
Q ss_conf 98850386277752286--742565259999998
Q gi|255764470|r 392 ERLRKSSQTFVMVLDEY--GVLEGMITPANILEA 423 (523)
Q Consensus 392 ~~fr~~~~~lAiVvDE~--G~~~GIVTleDIlE~ 423 (523)
T Consensus 82 ~~M~~~~i~~LPVVd~~~~~~lvGiit~~Dil~A 115 (115)
T cd04593 82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHCC
T ss_conf 9999869988999978999989999997996569