HHsearch alignment for GI: 255764470 and conserved domain: cd04593

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.08  E-value=2.5e-09  Score=87.13  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=91.8

Q ss_pred             EEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCCCC---CHHHHHH-CCCEEECCCCCHHHHH
Q ss_conf             89960899989999999857997888876785527888888887620202466---0168873-2743523899989999
Q gi|255764470|r  316 IVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEEGS---MNFKRSI-RKPLVVHENISVLKLM  391 (523)
Q Consensus       316 i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~~~---~~~~~li-r~~~~Vpe~~~l~~lL  391 (523)
T Consensus         3 P~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~-g~lvGIvT~~Dl~r~~~~~~~~~~~~v~~vmt~~~~tv~pd~~l~~al   81 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHH
T ss_conf             8388991999999999987499899999499-988999889999999973888667794543038966899999499999


Q ss_pred             HHHHHCCCEEEEEECCC--CCEEEEEEHHHHHHH
Q ss_conf             98850386277752286--742565259999998
Q gi|255764470|r  392 ERLRKSSQTFVMVLDEY--GVLEGMITPANILEA  423 (523)
Q Consensus       392 ~~fr~~~~~lAiVvDE~--G~~~GIVTleDIlE~  423 (523)
T Consensus        82 ~~M~~~~i~~LPVVd~~~~~~lvGiit~~Dil~A  115 (115)
T cd04593          82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             HHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHCC
T ss_conf             9999869988999978999989999997996569