HHsearch alignment for GI: 255764470 and conserved domain: cd04593
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.93 E-value=0.00014 Score=52.58 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=48.3
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCEEE-ECCCEEEEEECCCHH
Q ss_conf 7435238999899999885038627775228674256525999999870664457888631288-349859987001199
Q gi|255764470|r 377 KPLVVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLDITV-GDDGSLTVDGWIDVR 455 (523)
Q Consensus 377 ~~~~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~IvGei~DE~d~~~~i~~-~~d~~~~v~G~~~l~ 455 (523)
T Consensus 2 pP~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~g~lvGIvT~~Dl~r~~~~~~~---~~~~~v~~vmt~~~~tv~pd~~l~ 78 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA---GEPSAVDEVATPPLLTVHPDEPLA 78 (115)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCC---CCCCEEEEEECCCCEEECCCCHHH
T ss_conf 78388991999999999987499899999499988999889999999973888---667794543038966899999499
Q ss_pred HHHHHH
Q ss_conf 999982
Q gi|255764470|r 456 YASKLF 461 (523)
Q Consensus 456 el~~~l 461 (523)
T Consensus 79 ~al~~M 84 (115)
T cd04593 79 HALDRM 84 (115)
T ss_pred HHHHHH
T ss_conf 999999