HHsearch alignment for GI: 255764470 and conserved domain: cd04594
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.69 E-value=0.00015 Score=52.32 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCEEEEEEEEECCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHH
Q ss_conf 7866746534000289960899989999999857997888876785527888888887620
Q gi|255764470|r 302 ADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRD 362 (523)
Q Consensus 302 ~e~~V~~IMtPR~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~ 362 (523)
T Consensus 48 ~~~~v~d~Mt--~~v~tv~p~~~l~ea~~lM~~~~i~~lPVvd~--gklvGIIT~~Dil~A 104 (104)
T cd04594 48 TYGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILDA 104 (104)
T ss_pred CCCCHHHEEE--CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHCC
T ss_conf 6998445476--39888999897999999999869787899989--999999996895378