HHsearch alignment for GI: 255764470 and conserved domain: cd04600
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=5.1e-11 Score=99.56 Aligned_cols=109 Identities=22% Similarity=0.324 Sum_probs=93.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHCC-------------CCCHHHHHH-CCCE
Q ss_conf 02899608999899999998579978888767855278888888876202024-------------660168873-2743
Q gi|255764470|r 314 TEIVWLDVNCVDEDLQWKILELGHSRFPVAQGSLDSFIGIVSARDLLRDLLEE-------------GSMNFKRSI-RKPL 379 (523)
Q Consensus 314 ~~i~~ld~~~s~~e~~~~i~~~~~SR~PV~~~~~D~iiGiv~~kDLl~~~~~~-------------~~~~~~~li-r~~~ 379 (523)
T Consensus 2 rdvvtv~~~~tl~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECC-CCEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCE
T ss_conf 896998993979999999997299789999569-8088885699999877504653101222105578898995779986
Q ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
Q ss_conf 52389998999998850386277752286742565259999998
Q gi|255764470|r 380 VVHENISVLKLMERLRKSSQTFVMVLDEYGVLEGMITPANILEA 423 (523)
Q Consensus 380 ~Vpe~~~l~~lL~~fr~~~~~lAiVvDE~G~~~GIVTleDIlE~ 423 (523)
T Consensus 81 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiIt~~Dil~A 124 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 99898979999999997793499999579989999978997469